Citrus Sinensis ID: 024245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSEH
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEcccccEEEEEcccccEEccccEEEEEEEEEEcEEEEEccccEEccccccccEEEEEcccEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccEEEEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEcccccccEEEEcccccEEEEEEccccccccccEEEEEccccccEEEEEEEccccccEEEcccccccEEEEEEcccccEEEEcccccccccccEEEEEcccccEEEEEEcccccEEEEEccccccccccccccccccEHEEEEEccccccccEEEEEEccccEEEEEEcccccccEEEEEcccccEEEEEEccccccHccc
Coil and Loop (DISEMBL)
mskrppppdpvavlrghrasvtdvcfhqtkpilfagttggelriWDTVQHRTVSSSWVHSAAHGIVsvatgpsiglnkvisqgrdgtvkcwdiengglssnpsltiktnsyhFCKLSLvkepyanakqanepkdcyerevgetvdtdslcdskddvpaegpkYMAVAGEQLSEVEIWDLNTAErctrlhqnscggspnfsskgrGMCMAVQaylpsksqGFVNVLagyedgsilvwdirnpgipltamkvhlepglecsmwrnpitmseh
Flexible Loop (DISEMBL)
mskrppppdpvAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGglssnpsltiKTNSYHFCKLSLVKEPYanakqanepkdcyerEVGEtvdtdslcdskddVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHlepglecsmwrnpitmseh
Low Complexity Region (SEG)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSEH
Disordered region (IsUnstruct)
************VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA**************************************YMAVAGEQLSEVEIWDLNTAERCTRLHQNSC**********RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR********
Disordered Region (DISOPRED)
****PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM***
Disordered Region (DISEMBL)
**********VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSEH
Disordered Region (DISPRO)
*****PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q54HW5	359	Guanine nucleotide-bindin	yes	no	0.8	0.601	0.259	2e-16
Q9EQ15	326	Guanine nucleotide-bindin	yes	no	0.833	0.690	0.25	9e-11
A7UWE6	485	ASTRA-associated protein	N/A	no	0.811	0.451	0.238	9e-07
Q9BYB4	327	Guanine nucleotide-bindin	yes	no	0.692	0.571	0.229	3e-06
P41318	303	Target of rapamycin compl	yes	no	0.314	0.280	0.322	4e-06
A4RJA0	469	ASTRA-associated protein	N/A	no	0.718	0.413	0.252	6e-06
B8NG55	429	ASTRA-associated protein	N/A	no	0.792	0.498	0.227	8e-06
A2RA56	440	ASTRA-associated protein	no	no	0.474	0.290	0.288	1e-05
Q75BY3	425	Pre-mRNA-splicing factor	no	no	0.288	0.183	0.317	1e-05
Q8MYE8	425	Probable proteasomal ATPa	no	no	0.755	0.48	0.239	0.0001

>sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 61/277 (22%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHS--AAHG 64
           PDP  +LRGH+ +V  V F +  P +L++G+  GEL++W+  + + +S+   HS     G
Sbjct: 13  PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72

Query: 65  IVSV-----------ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
           ++S+                     ++SQGRDG +K W I +     N +  ++TNS   
Sbjct: 73  VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128

Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173
             LSL K                             C S                   S+
Sbjct: 129 --LSLGK-----------------------------CSSLSSNLLSISGSAIDPTSSTSQ 157

Query: 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-------PSKSQGFVNVLA 226
           VEIWDL   +   +L  N+            G+ M+++ Y         ++S   + +  
Sbjct: 158 VEIWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQSNDQIRLCT 212

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN 263
           GYE+G +L+WD+RN  IPL + K+H EP L  ++  N
Sbjct: 213 GYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNN 249

Dictyostelium discoideum (taxid: 44689)

>sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 39/264 (14%)

Query: 5   PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
           PPPP P  VLRG +++V  + F         P+LF+G+  G + IW ++Q R + ++   
Sbjct: 6   PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64

Query: 60  SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               G++ + T P    ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct: 65  HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE--------------GPKYMA 165
                    A   K   E ++ E     S+C  K +  A                 + + 
Sbjct: 121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLL 180

Query: 166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223
           +AG +   V +WD++  + C+++  H+    G    S K +G+         S S G V 
Sbjct: 181 LAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGI---------SGSAGKVL 231

Query: 224 VLAGYEDGSIL----VWDIRNPGI 243
            +   +D   L      ++ NPGI
Sbjct: 232 AVWSLDDQQSLQVKKTHELTNPGI 255

Mus musculus (taxid: 10090)

>sp|A7UWE6|ASA1_NEUCR ASTRA-associated protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=asa-1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 58/277 (20%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           PP P ++LRGH+A V    F +    L  G   G +  WD    R  +    H  A  I+
Sbjct: 7   PPTPKSILRGHKAQVHAATFIRNNERLVTGDADGFVIAWDLTIMRPRAVWQAHDNA--IL 64

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDI---ENGGLSSNPSL--------------TIKTN 109
            +A     G +++I+ GRD  +  W +   +   +S+   L               ++ N
Sbjct: 65  GIA---GWGNDRIITHGRDNKLIVWKLIGDDEARMSTTLPLDPCAEPRPKPWILHLLEVN 121

Query: 110 SYHFCKLSL--VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
           + +FC  S   V  P    +Q  + +D  +    E+                    +AV 
Sbjct: 122 TMNFCSFSYCPVSAPVLPGQQEGQSQDTAQESRFES-----------------ELLIAVP 164

Query: 168 GEQLSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
               SE ++I+ L +    TR H    G          GM MAV  +  + S   + ++A
Sbjct: 165 NTLASEAIDIFHLPSQ---TRRHTVKLGDK-------NGMVMAVALFNQADS---LTLVA 211

Query: 227 GYEDGSILVWD---IRNPGIPLTAMKVHLEPGLECSM 260
           GYE+G  +V     ++N  +PL     H +P L  S+
Sbjct: 212 GYENGLAIVAHRDPVKNDWVPLYQATCHSQPILSLSV 248

Component of the ASTRA complex involved in chromatin remodeling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Homo sapiens GN=GNB1L PE=1 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 74/261 (28%)

Query: 11  VAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------S 56
             VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++         +
Sbjct: 13  QFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVT 72

Query: 57  WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
           W+ +   G             +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ 
Sbjct: 73  WLQTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRS 118

Query: 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
           S++         A   +   E ++ E     S+C  K       PK  A  G  +     
Sbjct: 119 SILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK-------PKADAKLGMPM----- 166

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
                   C RL Q  C   P                          +LAGYEDGS+++W
Sbjct: 167 --------CLRLWQADCSSRP-------------------------LLLAGYEDGSVVLW 193

Query: 237 DIRNPGIPLTAMKVHLEPGLE 257
           D+    +  + +  H EP ++
Sbjct: 194 DVSEQKV-CSRIACHEEPVMD 213

Homo sapiens (taxid: 9606)

>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 4   RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct: 61  RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93
            +  V   P+ G  ++IS  RDG ++ WD+
Sbjct: 119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL 145

Essential component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. LST8 is involved in the negative regulation of transcription factors GLN3 and RTG1-RTG3, limiting the synthesis of alpha-ketoglutarate, glutamate and glutamine. LST8 is required for targeting of amino acid permeases (AAPs) to the plasma membrane. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway. LST8 is involved in maintenance of cell wall integrity. LST8 modulates TOR2 kinase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A4RJA0|ASA1_MAGO7 ASTRA-associated protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=asa1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 40/234 (17%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           P  P ++LRGH+A V    F +    L  G   G + +WD    R   + W    AH  V
Sbjct: 12  PAHPRSILRGHKAQVHAAAFVRNNERLVTGDADGFVVVWDLTIMRP-RAVW---RAHDDV 67

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
            +  G   G +++I+ GRD  +  W +      S                +L  +P A  
Sbjct: 68  LLGIG-GWGTDRLITHGRDNKLIVWQLREADEDS-------------LAKTLPVDPAAED 113

Query: 127 KQANEPKDCYEREVGE-TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAE 183
           +   +P   Y  E+      T SLC+   D  +E  + +      LS   ++I+ L + +
Sbjct: 114 RP--KPWLLYMLEISTMNFCTFSLCEMSSDPLSEDREALIAVPNTLSSEAIDIFHLPSQK 171

Query: 184 R--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
           R    RL Q+             GM MA++ +   +  G+  V  GYE+G  LV
Sbjct: 172 REHTIRLGQSE------------GMVMALELF---RVDGYFTVAVGYENGVALV 210

Component of the ASTRA complex involved in chromatin remodeling.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=asa1 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 41/255 (16%)

Query: 6   PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
           PP  P  +LRGH + +  +  FHQ    L +G   G + +WD V  R V+    H  A  
Sbjct: 9   PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67

Query: 65  IVSVATGPSIGLNKVISQGRDGTVKCW----------------DI--ENGGLSSNPSL-- 104
            V   T  +  + +V + GRD  +  W                DI  +N   ++ P L  
Sbjct: 68  EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127

Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164
           ++  N+ +FC  S++      +    EP         E  D  S      + P     + 
Sbjct: 128 SLPVNALNFCAFSMLFLDEEESPDTGEP---------EASDKTSTQSPGKNPPQHHSLFA 178

Query: 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224
                    ++I+ L    R   +        P   +   GM MAV  +  S  + ++  
Sbjct: 179 VPNALNSGAIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYSSTRELYIA- 229

Query: 225 LAGYEDGSILVWDIR 239
            + YEDG ++V+ +R
Sbjct: 230 -SAYEDGHVMVFALR 243

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952)

>sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=asa1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 4   RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
           R PP  P  +LRGH A++  +  FHQ    L +G   G + +WD V  R   ++W   A 
Sbjct: 9   RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64

Query: 63  HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
            G V    G S G   + +V + GRD  ++ W                DIE  +   +S 
Sbjct: 65  DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124

Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135
           P L  ++  N+ +FC  S+V  P   A  A++  + 
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTASDASEA 160

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q75BY3|PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PRP46 PE=3 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
           L+GH  +V D+C     P +F+ +    ++ WD  ++  V     H    G+ SV   PS
Sbjct: 152 LQGHIMTVRDICISARHPYMFSASQDKLVKCWDLERNTVVRD--FHGTLSGVHSVDLHPS 209

Query: 74  IGLNKVISQGRDGTVKCWDIEN 95
           + L  ++S GRD  V+ WDI +
Sbjct: 210 LDL--IVSAGRDSVVRVWDIRS 229

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated factor 1 OS=Dictyostelium discoideum GN=paaf1 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 42/246 (17%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
           L GH   V    F  +  ++ +G++   L+IWD ++    S+   H    G ++ A+   
Sbjct: 141 LDGHVGDVDLAMFFPSGRVILSGSSDSRLKIWDAIEGTCASTLVGHI---GGITSASLVD 197

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEP 132
            G N ++S  RDGT K WDI    + SN +   +  +  F   SL+   P      +N+ 
Sbjct: 198 RGRN-LVSCSRDGTSKLWDIPTSSIISNLTKLSRPINDSFIASSLLDSIPTTTTTNSNDN 256

Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV---AGEQLSEVEIWDLNTAERCTR-L 188
               EREVG   D  +L      + AE     A+   +   +S++ +  + + E+ TR +
Sbjct: 257 NKVDEREVG--TDGKTLI-----IAAEEGFLQAIDLRSKNMISQMNV--VQSGEKSTRSV 307

Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
             N+C    N+                        ++ G  +GSI  WD RN   P   +
Sbjct: 308 AFNACHVHKNY------------------------IIGGDHNGSIYFWDKRNLNSPFCRL 343

Query: 249 KVHLEP 254
           +    P
Sbjct: 344 QFTNSP 349

Inhibits proteasome 26S assembly and activity by impairing the association of the 19S regulatory complex with the 20S core.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
359492190	382	PREDICTED: guanine nucleotide-binding pr	0.944	0.667	0.677	2e-99
224104761	387	predicted protein [Populus trichocarpa]	0.944	0.658	0.655	5e-95
255562629	441	conserved hypothetical protein [Ricinus	0.948	0.580	0.623	5e-91
449449559	383	PREDICTED: guanine nucleotide-binding pr	0.940	0.663	0.606	8e-85
297799000	386	EMB2757 [Arabidopsis lyrata subsp. lyrat	0.959	0.670	0.575	2e-83
323511860	375	decreased size exclusion limit 1 [Nicoti	0.933	0.672	0.628	2e-83
42567255	386	transducin/WD40 domain-containing protei	0.959	0.670	0.575	4e-82
356517988	387	PREDICTED: ASTRA-associated protein 1-li	0.944	0.658	0.562	7e-82
357466905	285	Guanine nucleotide-binding protein subun	0.911	0.863	0.578	5e-77
357466903	364	Guanine nucleotide-binding protein subun	0.911	0.675	0.578	1e-76

>gi|359492190|ref|XP_002278969.2| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Vitis vinifera] gi|302142603|emb|CBI19806.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 214/267 (80%), Gaps = 12/267 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASVTDVCFH +  ILF G++ GELRIWDTVQHRTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHG+V VA  P IG NK++SQGRDGTVK WDIE GGLS +PSLTIKTN+YHFCKLSL+K
Sbjct: 60  AAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDS-----------KDDVPAEGPKYMAVAGE 169
           +P A A+QA  PK  ++ +V +TVD + L DS            D   AEGPKY+A+AGE
Sbjct: 120 KPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLNTAER  +L Q   GGS N+ +K RGMCMAVQA+LPS+SQGF+N+L+GYE
Sbjct: 180 QSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPGL 256
           DG+++ WDIRNPGIP+T++K HLEP L
Sbjct: 240 DGTMVWWDIRNPGIPITSVKFHLEPIL 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104761|ref|XP_002313556.1| predicted protein [Populus trichocarpa] gi|222849964|gb|EEE87511.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 177/270 (65%), Positives = 208/270 (77%), Gaps = 15/270 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPVAVLRGHRASV D  FH +KP+LF G+T GELRIWDTVQHRTVSSS VHS
Sbjct: 1   MSKRPAP-DPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA  P IG NKVISQGRDGTVKCWDI+NGGLS  PSLTIKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSREPSLTIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------------DDVPAEGPKYMAV 166
           +P ++ +Q   P   +E++  ETVDT+SL +                +D+ A+G KY+AV
Sbjct: 120 KPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAV 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           AGEQ SEVEIWDLNTAER  RL Q+  GGS N S+  RGMCMAVQA+LPS+SQGF+ +L 
Sbjct: 180 AGEQSSEVEIWDLNTAERLARLPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILV 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGL 256
           GYEDGS+L+WD+RNPG  + ++K H EP L
Sbjct: 240 GYEDGSMLLWDMRNPGAFVNSVKFHTEPVL 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562629|ref|XP_002522320.1| conserved hypothetical protein [Ricinus communis] gi|223538398|gb|EEF40004.1| conserved hypothetical protein [Ricinus communis]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 169/271 (62%), Positives = 205/271 (75%), Gaps = 15/271 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           M KRPPPPDP+ VLRGHRASVTD CFH +KPILF G+  GELRIWDTVQHRT+SS+WVHS
Sbjct: 1   MIKRPPPPDPITVLRGHRASVTDACFHPSKPILFTGSADGELRIWDTVQHRTISSAWVHS 60

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+S+A+    G +KVISQG+DGTVK WDI+ GGLS  P +TI+TNSYHFCKLSLVK
Sbjct: 61  AAHGIISIASCNLNGNDKVISQGKDGTVKLWDIQEGGLSRVPVVTIRTNSYHFCKLSLVK 120

Query: 121 EPYANAKQANEPKDCYEREVGETVDTD-------------SLC--DSKDDVPAEGPKYMA 165
           +P         P   +E E  ETVDT+             S C  DS++D   +  K +A
Sbjct: 121 KPGDKVVHDKGPNHQHEIEALETVDTNVSYDRENRHNENSSKCSSDSEEDKHIDVLKCVA 180

Query: 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225
           +AGEQ SEVEIWDLNTAER +RL QN  GGS + +++ RGMCMAVQA+LPS+SQGF+N+L
Sbjct: 181 IAGEQSSEVEIWDLNTAERISRLAQNCSGGSSSITTQKRGMCMAVQAFLPSESQGFLNLL 240

Query: 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGL 256
           AGYEDGS+L WD+R+PG+PLT++K H EP L
Sbjct: 241 AGYEDGSMLWWDMRSPGVPLTSVKFHTEPVL 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449559|ref|XP_004142532.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] gi|449511779|ref|XP_004164051.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 162/267 (60%), Positives = 199/267 (74%), Gaps = 13/267 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASV DV FH ++P+LF+G+  GELRIWDT Q+RTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA   SIG N+V+SQGRDGTVKCWDI++  LS  P+++IKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-----------PAEGPKYMAVAGE 169
           +P ++    N+  +C      + V+   L  S D               +G KY+AV+GE
Sbjct: 120 QP-SDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTEHSYRSEVDGLKYVAVSGE 178

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLN  ER  RL  NS G  PN S+K RG+CMAVQA+LPSKSQGF+NVL+GYE
Sbjct: 179 QSSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYE 238

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPGL 256
           DGS+L WD+RNP +PL ++K H+EP L
Sbjct: 239 DGSMLWWDLRNPRVPLASVKCHVEPVL 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799000|ref|XP_002867384.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] gi|297313220|gb|EFH43643.1| EMB2757 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 156/271 (57%), Positives = 202/271 (74%), Gaps = 12/271 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +KP+LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKPLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G NK+ISQGRDGTVKCWDIE+GGLS +P L ++T++YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGENKIISQGRDGTVKCWDIEDGGLSRDPLLILETSAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVP----------AEGPKYMAVAGE 169
           +P  + ++A +  ++C E++ G+T       DS+  V           AEG  ++AV GE
Sbjct: 120 KPKTSLQEAVSHLQNCDEQDDGDTRSVQLGDDSERSVEDSGLLQDGDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWD+NT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDINTGDKIIQLPQSSLDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPGLECSM 260
           DGS+L+WDIRN  IPLT++K H EP L  S+
Sbjct: 240 DGSMLLWDIRNAKIPLTSVKFHSEPVLSLSI 270

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323511860|gb|ADX87418.1| decreased size exclusion limit 1 [Nicotiana benthamiana]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 194/261 (74%), Gaps = 9/261 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPV+VLRGHRASV D+CFH +  ILF+G+T GELRIW+TVQ+RTVSS+WVHS
Sbjct: 1   MSKRPAP-DPVSVLRGHRASVADICFHPSNSILFSGSTDGELRIWNTVQYRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+ VA  P +G NKVISQGRDGTVKCWD   GGLS  P LTIKTNSYHFCKLS+ K
Sbjct: 60  AAHGIICVAASPVLGDNKVISQGRDGTVKCWDFGGGGLSRTPLLTIKTNSYHFCKLSIAK 119

Query: 121 EPYANAK----QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
            P    K    + NE  D  +RE      TDS+   K     EGPKY+A+AGEQ S VEI
Sbjct: 120 SPSEAMKIDDLEVNEIVDGMQREEQGDQPTDSI-KFKGKELIEGPKYVAIAGEQASVVEI 178

Query: 177 WDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
           WD+NTAER  +L  +S  GSP N +   RGMCMAVQA+LPS+SQG ++++AGYEDGSI  
Sbjct: 179 WDVNTAERIAQLPHSS--GSPSNQTPNQRGMCMAVQAFLPSESQGLLSIMAGYEDGSIAW 236

Query: 236 WDIRNPGIPLTAMKVHLEPGL 256
           WD+RN G+PLT++K H EP L
Sbjct: 237 WDLRNLGVPLTSVKFHSEPVL 257

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567255|ref|NP_194715.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|75674124|dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gi|332660286|gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/271 (57%), Positives = 200/271 (73%), Gaps = 12/271 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDS----------KDDVPAEGPKYMAVAGE 169
           +P  + ++A +  + C E++ G+T +     DS          +D   AEG  ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPGLECSM 260
           DGSIL+WDIRN  IPLT++K H EP L  S+
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSV 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517988|ref|XP_003527666.1| PREDICTED: ASTRA-associated protein 1-like [Glycine max]

 Score =  309 bits (792), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 152/270 (56%), Positives = 200/270 (74%), Gaps = 15/270 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MS+RPPP DPVAVLRGHRASVTD+ FH +KPILF+G+  GE+RIWDT+QHRTVSS+W+HS
Sbjct: 1   MSRRPPP-DPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGIV+VA   S+G NK +SQGRDGTVK W++ + GLS  P LTIKTN+YHFCK S+VK
Sbjct: 60  AAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--------------EGPKYMAV 166
           +    +K+    +D Y  E+G   D + L D +++                 EG +Y+A+
Sbjct: 120 KHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVAL 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           +GE+ SEVEIWDL +AE+  +L  ++   S +  +KGRGMCMA+Q +LPS+SQGF+NVLA
Sbjct: 180 SGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGRGMCMALQLFLPSESQGFLNVLA 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGL 256
           GYEDGS+L WD+RNPG+P+T++K H EP L
Sbjct: 240 GYEDGSMLWWDVRNPGVPVTSVKFHSEPVL 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466905|ref|XP_003603737.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492785|gb|AES73988.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 188/256 (73%), Gaps = 10/256 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPGL 256
           PG+P++++K H EP L
Sbjct: 231 PGVPVSSVKFHSEPVL 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466903|ref|XP_003603736.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492784|gb|AES73987.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 188/256 (73%), Gaps = 10/256 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPGL 256
           PG+P++++K H EP L
Sbjct: 231 PGVPVSSVKFHSEPVL 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2123869	386	EMB2757 "AT4G29860" [Arabidops	0.959	0.670	0.575	1.1e-78
DICTYBASE|DDB_G0289181	359	gnb1l "guanine nucleotide-bind	0.403	0.303	0.306	4.3e-18
ZFIN|ZDB-GENE-050320-77	323	gnb1l "guanine nucleotide bind	0.540	0.452	0.300	1e-14
UNIPROTKB|F1NF00	328	GNB1L "Uncharacterized protein	0.722	0.594	0.286	1.4e-11
MGI|MGI:1338057	326	Gnb1l "guanine nucleotide bind	0.729	0.604	0.273	4.5e-10
RGD|1594165	326	Gnb1l "guanine nucleotide bind	0.729	0.604	0.264	8e-10
UNIPROTKB|Q9BYB4	327	GNB1L "Guanine nucleotide-bind	0.729	0.602	0.269	7.6e-09
SGD|S000004951	303	LST8 "Protein required for the	0.507	0.452	0.287	8.9e-08
UNIPROTKB|F1RK57	293	GNB1L "Uncharacterized protein	0.422	0.389	0.312	6e-07
DICTYBASE|DDB_G0277471	425	DDB_G0277471 "putative proteas	0.459	0.291	0.302	1.4e-06

TAIR|locus:2123869 EMB2757 "AT4G29860" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 156/271 (57%), Positives = 200/271 (73%)

Query:     1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct:     1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query:    61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
              A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct:    60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query:   121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----------DDVPAEGPKYMAVAGE 169
             +P  + ++A +  + C E++ G+T +     DS+          D   AEG  ++AV GE
Sbjct:   120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query:   170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
             Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct:   180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query:   230 DGSILVWDIRNPGIPLTAMKVHLEPGLECSM 260
             DGSIL+WDIRN  IPLT++K H EP L  S+
Sbjct:   240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSV 270

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009790 "embryo development" evidence=IMP

GO:0048700 "acquisition of desiccation tolerance in seed" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0289181 gnb1l "guanine nucleotide-binding protein subunit beta-like protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 38/124 (30%), Positives = 65/124 (52%)

Query:     8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HG 64
             PDP  +LRGH+ +V  V F +  P +L++G+  GEL++W+  + + +S+   HS     G
Sbjct:    13 PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72

Query:    65 IVSVATGPSIGLNK-----------VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
             ++S+    +   N+           ++SQGRDG +K W I +     N +  ++TNS   
Sbjct:    73 VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNSLSL 131

Query:   114 CKLS 117
              K S
Sbjct:   132 GKCS 135

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-77 gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 46/153 (30%), Positives = 71/153 (46%)

Query:     6 PPPDPVAVLRGHRASVTDV---CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
             PPPDP+ +LRG  ASV  +   C     P+L++G+  G + +W+    R       H A 
Sbjct:     4 PPPDPLYILRGSGASVNALHFCCDGDGPPLLYSGSGKGAVHVWNLSTRRAERVLESH-AG 62

Query:    63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP 122
             + ++ + T  +   + +ISQGRD  V  WD+  G  +   SL   T S  FC+ SL+   
Sbjct:    63 NSVIWLNTFNN-SRSCLISQGRDMRVCVWDLSEGRSAVTDSL--HTGSVGFCQCSLLGSR 119

Query:   123 YANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155
               +   A+  +   E  V E      +C  K D
Sbjct:   120 LGSTLLAHPTQHMEEVSVVEMSSWTQVCSLKPD 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NF00 GNB1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 64/223 (28%), Positives = 100/223 (44%)

Query:     6 PPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             PPPDP  VLRG  A+V  + F         P+LF+G+  G + +W+   HR  ++     
Sbjct:     4 PPPDPHFVLRGTGAAVHALHFSCGGGEPDIPVLFSGSENGFIHVWNLKTHRVDAAL---- 59

Query:    61 AAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               HG  SV    ++ G  +++SQGRD  +  WD+  G  S   S  + T +  FC+ SL+
Sbjct:    60 DGHGRKSVCGLKTMDGKERLLSQGRDQRICLWDLAEGRTSVTDS--VFTENVGFCRCSLL 117

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE--------------GPKYMA 165
             K        A   K   E +V E     S+C  K +V A+              G +   
Sbjct:   118 KVAEGRWLMATAAKALEEVQVLELPSKTSVCTLKPEVGAKLGMPMCLKLWQGSCGSQPSL 177

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +W+L+T +  ++L  HQ         S K +G+
Sbjct:   178 LAGYEDGSVLLWNLSTGKVLSQLICHQEPVMSLDFDSEKAKGI 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

MGI|MGI:1338057 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 61/223 (27%), Positives = 105/223 (47%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF---HQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F    Q    P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G++ + T P  G ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct:    66 GG-QGVIWLKTLPQ-G-HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-G-P------------KYMA 165
                      A   K   E ++ E     S+C  K +  A  G P            + + 
Sbjct:   121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGI 223

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0035176 "social behavior" evidence=IMP

RGD|1594165 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 59/223 (26%), Positives = 101/223 (45%)

Query:     5 PPPPDPVAVLRGHRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F         P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPSPRFVLRGTQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G+  + T P  G  +++SQGRD  +  WD+  G  +   S  ++ +S  FCK S++
Sbjct:    66 GG-QGVTWLKTLPQ-G-QQLLSQGRDPRLCLWDLAEGRNTVMDS--VQLDSVGFCKSSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVPA--------EGPKYMA 165
                      A   K   E ++ E     S+C      D+K  +P            + + 
Sbjct:   121 VRGQLCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAKPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGV 223

GO:0005737 "cytoplasm" evidence=ISO

GO:0035176 "social behavior" evidence=ISO

UNIPROTKB|Q9BYB4 GNB1L "Guanine nucleotide-binding protein subunit beta-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 60/223 (26%), Positives = 103/223 (46%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPPDP  VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++   H
Sbjct:     7 PPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGH 66

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                  +  + T P  G  +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ S++
Sbjct:    67 GG-QCVTWLQTLPQ-G-RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRSSIL 121

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVP-------AE-GPKYMA 165
                      A   +   E ++ E     S+C      D+K  +P       A+   + + 
Sbjct:   122 AGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPLL 181

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+R+  H+         S K RG+
Sbjct:   182 LAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGI 224

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0009898 "internal side of plasma membrane" evidence=NAS

SGD|S000004951 LST8 "Protein required for the transport of Gap1p to the cell surface" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
 Identities = 42/146 (28%), Positives = 69/146 (47%)

Query:     4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
             R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct:    61 RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query:    64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              +  V   P+ G  ++IS  RDG ++ WD+  G       LT + ++     LS+  +  
Sbjct:   119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL--GENQCTHQLTPEDDT-SLQSLSMASDGS 172

Query:   124 ANAKQANEPKDCYEREVGETVDTDSL 149
               A  AN   +CY  E+    D   L
Sbjct:   173 MLAA-ANTKGNCYVWEMPNHTDASHL 197

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IMP

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=IC;IMP

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IPI

GO:0031931 "TORC1 complex" evidence=IPI

GO:0006810 "transport" evidence=IMP

UNIPROTKB|F1RK57 GNB1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
 Identities = 39/125 (31%), Positives = 64/125 (51%)

Query:     1 MSKRP-PPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVS 54
             M+  P PPPDP  VLRG +++V  + F      Q  P+L +G+  G + IW     R V+
Sbjct:     1 MADLPLPPPDPQFVLRGTQSAVHALHFCGGAQGQGCPLLLSGSLRGLVHIWSLQTRRVVA 60

Query:    55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114
             +   H     +  + T P  G  +++SQGRD  +  WD+  G  +   S+ ++  S  FC
Sbjct:    61 TLDGHGG-QCVTWLQTLPQ-G-PQLLSQGRDLKLCLWDLAEGRNTVVDSVHLE--SVGFC 115

Query:   115 KLSLV 119
             + S++
Sbjct:   116 RGSIL 120

GO:0035176 "social behavior" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0277471 DDB_G0277471 "putative proteasomal ATPase-associated factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 126 (49.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 39/129 (30%), Positives = 59/129 (45%)

Query:    14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
             L GH   V    F  +  ++ +G++   L+IWD ++    S+   H    GI S A+   
Sbjct:   141 LDGHVGDVDLAMFFPSGRVILSGSSDSRLKIWDAIEGTCASTLVGHIG--GITS-ASLVD 197

Query:    74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEP 132
              G N ++S  RDGT K WDI    + SN +   +  +  F   SL+   P      +N+ 
Sbjct:   198 RGRN-LVSCSRDGTSKLWDIPTSSIISNLTKLSRPINDSFIASSLLDSIPTTTTTNSNDN 256

Query:   133 KDCYEREVG 141
                 EREVG
Sbjct:   257 NKVDEREVG 265

GO:0000502 "proteasome complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032589001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa)			•						0.499
	GSVIVG00003077001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (350 aa)			•						0.499
	GSVIVG00025117001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa)			•						0.495
	GSVIVG00014906001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (390 aa)			•						0.495
	GSVIVG00036459001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (441 aa)			•						0.494
	GSVIVG00015931001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (414 aa)			•						0.493
	GSVIVG00023743001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa)			•						0.492
	GSVIVG00018848001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (339 aa)			•						0.491
	GSVIVG00003105001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa)			•						0.490
	GSVIVG00010426001	SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa)			•						0.489

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-07
smart00320	40	smart00320, WD40, WD40 repeats	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
              L+GH   VT V F     +L  G+  G +++WD      + +   H+    +  VA
Sbjct: 1  LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVA 58

Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
                   + S   D T++ WD+E G
Sbjct: 59 ASAD--GTYLASGSSDKTIRLWDLETG 83

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 50/239 (20%), Positives = 76/239 (31%), Gaps = 79/239 (33%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHS 60
                +  LRGH   V  V F      + + +  G +++WD    + V      +  V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A          S    K++S   DGT+K WD+  G         + T   H        
Sbjct: 183 VA---------FSPDGEKLLSSSSDGTIKLWDLSTGKC-------LGTLRGH-------- 218

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
           E   N                      S+  S D         +A   E  + + +WDL 
Sbjct: 219 ENGVN----------------------SVAFSPDG------YLLASGSEDGT-IRVWDLR 249

Query: 181 TAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
           T E    L  H NS               +A     P   +    + +G  DG+I +WD
Sbjct: 250 TGECVQTLSGHTNSVT------------SLAWS---PDGKR----LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-P 72
           LRGH  S+T + F     +L +G++ G +++WD      +  S        +  +A   P
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
                 + S   DGTVK WD+   G       T++ +S     L+   +    A  ++  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 133 KDCYEREVGETVDTDSLCDSKDDV-----PAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186
                 ++       +L    D V       +G   +A      + + +WDL+T +   +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGKLLRS 236

Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246
            L  +S     +FS  G                    + +G  DG+I +WD+R+    L 
Sbjct: 237 TLSGHSDSVVSSFSPDGS------------------LLASGSSDGTIRLWDLRSSSSLLR 278

Query: 247 AMKVHLEP 254
            +  H   
Sbjct: 279 TLSGHSSS 286

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATG 71
            L GH  SV    F     +L +G++ G +R+WD     + + +   HS    ++SVA  
Sbjct: 237 TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFS 293

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
           P      + S   DGTV+ WD+E G L S+ +L            S       +    + 
Sbjct: 294 PD--GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191
               ++   G+ + T     +   V       +  +G     V +WDL+T      L   
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--- 408

Query: 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
                              +      S    ++ +G  D +I +WD++ 
Sbjct: 409 --------------DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
            +  L GH  SVT + F     +L +G++  G +++WD    + +S+   H+     VS 
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSS 203

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENG 96
                 G   + S   DGT++ WD+  G
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTG 231

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH +SV  V F     +L +G++ G +R+WD    + +SS  +      + S++
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115
             P  G   V     DGT++ WD+  G             S  F  
Sbjct: 336 FSPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP 380

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F      L +G+  G +++WD
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F     +L +G+  G +R+WD
Sbjct: 3  LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 54/257 (21%), Positives = 83/257 (32%), Gaps = 73/257 (28%)

Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
           + +  L+GH   V DV        L +G++   +R+WD      V +  +      + SV
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSV 99

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
           A  P   +  + S  RD T+K WD+E G   +  +L   T+  +    S           
Sbjct: 100 AFSPDGRI--LSSSSRDKTIKVWDVETGKCLT--TLRGHTDWVNSVAFS----------- 144

Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
                                                 +  Q   +++WDL T +    L
Sbjct: 145 -------------------------------PDGTFVASSSQDGTIKLWDLRTGKCVATL 173

Query: 189 --HQ---NSCGGSPN----FSSKGRGMCM-------AVQAYLPSKSQGFVNV-------- 224
             H    NS   SP+     SS   G               L     G  +V        
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 225 -LAGYEDGSILVWDIRN 240
             +G EDG+I VWD+R 
Sbjct: 234 LASGSEDGTIRVWDLRT 250

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG0296	399	consensus Angio-associated migratory cell protein	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.82
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.8
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.77
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0646	476	consensus WD40 repeat protein [General function pr	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG2055	514	consensus WD40 repeat protein [General function pr	99.69
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.69
KOG2096	420	consensus WD40 repeat protein [General function pr	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
KOG2048	691	consensus WD40 repeat protein [General function pr	99.68
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG1188	376	consensus WD40 repeat protein [General function pr	99.57
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.56
KOG1334	559	consensus WD40 repeat protein [General function pr	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.49
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.42
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.42
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
PRK05137	435	tolB translocation protein TolB; Provisional	99.36
PRK03629	429	tolB translocation protein TolB; Provisional	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
PRK04922	433	tolB translocation protein TolB; Provisional	99.34
KOG2321	703	consensus WD40 repeat protein [General function pr	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.31
KOG2321	703	consensus WD40 repeat protein [General function pr	99.3
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
KOG1310	758	consensus WD40 repeat protein [General function pr	99.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.24
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.24
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.23
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.22
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.14
PRK04792	448	tolB translocation protein TolB; Provisional	99.14
KOG1334	559	consensus WD40 repeat protein [General function pr	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.1
KOG2315	566	consensus Predicted translation initiation factor	99.1
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.08
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
KOG4547	541	consensus WD40 repeat-containing protein [General	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.06
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.06
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.04
KOG2315	566	consensus Predicted translation initiation factor	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.95
KOG2695	425	consensus WD40 repeat protein [General function pr	98.93
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.93
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
PRK01029	428	tolB translocation protein TolB; Provisional	98.86
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.84
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.82
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.76
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.75
PRK04043	419	tolB translocation protein TolB; Provisional	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
COG4946	668	Uncharacterized protein related to the periplasmic	98.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.52
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.5
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.41
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.32
KOG2314	698	consensus Translation initiation factor 3, subunit	98.29
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.24
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.08
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.04
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.04
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.0
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.97
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.8
KOG3621	726	consensus WD40 repeat-containing protein [General	97.8
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.67
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.58
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.55
PRK02888	635	nitrous-oxide reductase; Validated	97.55
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.49
COG3391	381	Uncharacterized conserved protein [Function unknow	97.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.46
COG3391	381	Uncharacterized conserved protein [Function unknow	97.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.33
KOG3621	726	consensus WD40 repeat-containing protein [General	97.3
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.24
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.2
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.17
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.14
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.11
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.09
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.09
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.97
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.59
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.54
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.48
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.43
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.27
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.19
PRK13616	591	lipoprotein LpqB; Provisional	96.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.83
PHA02713	557	hypothetical protein; Provisional	95.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.68
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.48
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.2
COG4590	733	ABC-type uncharacterized transport system, permeas	95.12
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.76
PRK13616	591	lipoprotein LpqB; Provisional	94.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.67
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.24
KOG2444	238	consensus WD40 repeat protein [General function pr	94.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.97
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.92
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.17
KOG2395	644	consensus Protein involved in vacuole import and d	93.09
KOG2444	238	consensus WD40 repeat protein [General function pr	92.8
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.71
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.99
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.95
PHA02713	557	hypothetical protein; Provisional	91.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	91.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.5
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.44
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.05
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.64
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.23
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.2
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.09
COG5167	776	VID27 Protein involved in vacuole import and degra	89.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.72
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.6
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.44
COG5276	370	Uncharacterized conserved protein [Function unknow	89.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.97
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.58
PRK10115	686	protease 2; Provisional	88.54
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	88.54
KOG2247	615	consensus WD40 repeat-containing protein [General	88.43
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.36
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.12
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.72
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.7
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.88
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.62
PHA03098	534	kelch-like protein; Provisional	86.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.38
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	85.58
PRK10115	686	protease 2; Provisional	85.48
COG5167	776	VID27 Protein involved in vacuole import and degra	85.12
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.0
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.53
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.96
PHA02790	480	Kelch-like protein; Provisional	83.76
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.28
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	82.97
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	82.66
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	80.23
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	80.09

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-40  Score=245.05  Aligned_cols=230  Identities=19%  Similarity=0.305  Sum_probs=197.9

Q ss_pred             CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..+++|+||.+.|.++.|+|.  +..||||+.||++++|++.+..++..+.+|.  ..|..++|+|  +|++|+|++.|.
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD~  283 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFDS  283 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeeccccc
Confidence            678999999999999999995  6699999999999999999999999999999  6699999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      +-++||++++..    +...+++....  +++.+.+.+..+.+++.   ..+||+++++.+. .+.+|..    ++|+|+
T Consensus       284 tWRlWD~~tk~E----lL~QEGHs~~v--~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im-~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  284 TWRLWDLETKSE----LLLQEGHSKGV--FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM-FLAGHIKEILSVAFSPN  356 (459)
T ss_pred             chhhcccccchh----hHhhccccccc--ceeEecCCCceeeccCccchhheeecccCcEEE-EecccccceeeEeECCC
Confidence            999999999864    33555665554  34555666666666654   4679999999887 5666877    999999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      | +.++ +|+.|++++|||++....++++.        +|.+    .|..+. |+|.  .|. +|+|++.|++++||..+
T Consensus       357 G-y~lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH~n----lVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  357 G-YHLA-TGSSDNTCKVWDLRMRSELYTIP--------AHSN----LVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTR  418 (459)
T ss_pred             c-eEEe-ecCCCCcEEEeeecccccceecc--------cccc----hhhheE-eccc--CCe-EEEEcccCcceeeecCC
Confidence            9 4555 78889999999999999999998        8854    677777 9994  455 99999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      + ..+++.+.||.+.|.++..++|+..|.
T Consensus       419 ~-~~~~ksLaGHe~kV~s~Dis~d~~~i~  446 (459)
T KOG0272|consen  419 T-WSPLKSLAGHEGKVISLDISPDSQAIA  446 (459)
T ss_pred             C-cccchhhcCCccceEEEEeccCCceEE
Confidence            9 999999999999999999999998764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-38  Score=230.87  Aligned_cols=241  Identities=18%  Similarity=0.299  Sum_probs=193.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++-..+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|.  ..|.+++|+|  ||..|++|+.||+|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsP--Dgk~iASG~~dg~I  181 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSP--DGKKIASGSKDGSI  181 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECC--CcchhhccccCCeE
Confidence            5677899999999999999999999999999999999999999999999999  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCc------cceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY------ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~  160 (270)
                      ++||.++++...   ..+.++...+..++...-..      .....-.+...+||+..+..+. .+.+|..  .|+...|
T Consensus       182 ~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  182 RLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGG  257 (480)
T ss_pred             EEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcC
Confidence            999999998654   45667777766555443211      1222335667889988776665 6778888  5555666


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCc------------------------------------------------
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS------------------------------------------------  192 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------  192 (270)
                      +.++. +|+.|++|++|+...|.+..+++...                                                
T Consensus       258 ~gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  258 EGLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             CceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            65554 89999999999988876655554110                                                


Q ss_pred             -----------------------CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          193 -----------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       193 -----------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                                             .....||    ...+..+. |+|   |++ ++|+++.|..|++||.++ ++.+.+|.
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~-fSP---d~r-~IASaSFDkSVkLW~g~t-Gk~lasfR  406 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVS-FSP---DGR-YIASASFDKSVKLWDGRT-GKFLASFR  406 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhch----hhheeeEE-ECC---Ccc-EEEEeecccceeeeeCCC-cchhhhhh
Confidence                                   0011233    23567777 999   566 999999999999999999 99999999


Q ss_pred             ccCCCeeEEEeecCCCcee
Q 024245          250 VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       250 ~~~~~v~~~~~s~~g~~ls  268 (270)
                      +|-++|+.++|+.|.++|-
T Consensus       407 GHv~~VYqvawsaDsRLlV  425 (480)
T KOG0271|consen  407 GHVAAVYQVAWSADSRLLV  425 (480)
T ss_pred             hccceeEEEEeccCccEEE
Confidence            9999999999999988764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=228.16  Aligned_cols=231  Identities=17%  Similarity=0.233  Sum_probs=188.6

Q ss_pred             CcccccccccccEEEEEEeC-----CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      +..+.|.||+..|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|.  .+|+|+.|--  + .+|++++
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VTCvrwGG--~-gliySgS  265 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVTCVRWGG--E-GLIYSGS  265 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceEEEEEcC--C-ceEEecC
Confidence            45678999999999999987     56799999999999999999999999999999  6699999975  4 7999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeecc-------------CC------------------------ccce
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-------------EP------------------------YANA  126 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~------------------------~~~~  126 (270)
                      .|++|++|+...|.+.+    .+.++...+..+++.-             ..                        ....
T Consensus       266 ~DrtIkvw~a~dG~~~r----~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCR----ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             CCceEEEEEccchhHHH----hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            99999999999987755    5556655554444431             11                        0111


Q ss_pred             ecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC
Q 024245          127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (270)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~  202 (270)
                      ..++....+|+....+.....+.+|+.    +.||||++++  ++++.|.+|++||.++|+.+.+|.        ||.  
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I--ASaSFDkSVkLW~g~tGk~lasfR--------GHv--  409 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI--ASASFDKSVKLWDGRTGKFLASFR--------GHV--  409 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE--EEeecccceeeeeCCCcchhhhhh--------hcc--
Confidence            222333344665555556667788888    8999999744  478899999999999999999999        884  


Q ss_pred             CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                        +.++.++ |+.   |.+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+.
T Consensus       410 --~~VYqva-wsa---DsR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  410 --AAVYQVA-WSA---DSR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             --ceeEEEE-ecc---Ccc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceee
Confidence              4788888 997   455 999999999999999999 899999999999999999999998765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-36  Score=224.44  Aligned_cols=224  Identities=18%  Similarity=0.263  Sum_probs=189.2

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      -|-+.+|..+.|+.++..|+||+.+|.++||+..+...+++|.+|.  +.|.++.|+|..++..++|++.||++++|++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~--~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT--SRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc--cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            3557899999999999999999999999999999999999999999  66999999995335689999999999999999


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---EEeccCceeeeccCCCCC----eEecCCCCeEEEEe
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---YEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~  167 (270)
                      +..    ++..+.++...+  ..+.+++.+.++.+++.+..   ||+.++..+. ..+||..    ++|.+||.  ++++
T Consensus       250 ~e~----~l~~l~gH~~RV--s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGS--L~~t  320 (459)
T KOG0272|consen  250 QET----PLQDLEGHLARV--SRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGS--LAAT  320 (459)
T ss_pred             CCc----chhhhhcchhhh--eeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCc--eeec
Confidence            874    455777776544  35566777777777777665   5666555443 5677777    99999997  4558


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~  247 (270)
                      |+.|..-+|||+++++++..+.        ||.    ..+.++. |+|   +|. .||||+.|++++|||++. ..++.+
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~--------gH~----k~I~~V~-fsP---NGy-~lATgs~Dnt~kVWDLR~-r~~ly~  382 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLA--------GHI----KEILSVA-FSP---NGY-HLATGSSDNTCKVWDLRM-RSELYT  382 (459)
T ss_pred             cCccchhheeecccCcEEEEec--------ccc----cceeeEe-ECC---Cce-EEeecCCCCcEEEeeecc-ccccee
Confidence            9999999999999999999999        784    4688888 999   576 999999999999999999 788999


Q ss_pred             eeccCCCeeEEEeec-CCCce
Q 024245          248 MKVHLEPGLECSMWR-NPITM  267 (270)
Q Consensus       248 ~~~~~~~v~~~~~s~-~g~~l  267 (270)
                      +.+|.+-|+.+.|+| .|.+|
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             cccccchhhheEecccCCeEE
Confidence            999999999999999 55555

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1e-34  Score=206.14  Aligned_cols=234  Identities=13%  Similarity=0.214  Sum_probs=190.0

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+...++.++...  ..|...+|+|  .|++++.|+.|+...
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--~WVMtCA~sP--Sg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSP--SGNFVACGGLDNKCS  122 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--eeEEEEEECC--CCCeEEecCcCceeE
Confidence            458899999999999999999999999999999999999988888888877  6799999999  999999999999999


Q ss_pred             EEEccCCcc--CCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCCe
Q 024245           90 CWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGPK  162 (270)
Q Consensus        90 ~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~~  162 (270)
                      ||++.+...  ..+....+.++.....+..+..............-.+||+++++... .+.+|..    ++++| +++ 
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~-~f~GH~gDV~slsl~p~~~n-  200 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ-VFHGHTGDVMSLSLSPSDGN-  200 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE-EecCCcccEEEEecCCCCCC-
Confidence            999986522  11223345666665555555554444444445556779999998766 6668888    78889 555 


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      .++ +|+.|+..+|||+|.+.++++|.        ||.    .-+.++. |.|+   |. -+++|++|++.++||++. .
T Consensus       201 tFv-Sg~cD~~aklWD~R~~~c~qtF~--------ghe----sDINsv~-ffP~---G~-afatGSDD~tcRlyDlRa-D  261 (343)
T KOG0286|consen  201 TFV-SGGCDKSAKLWDVRSGQCVQTFE--------GHE----SDINSVR-FFPS---GD-AFATGSDDATCRLYDLRA-D  261 (343)
T ss_pred             eEE-ecccccceeeeeccCcceeEeec--------ccc----cccceEE-EccC---CC-eeeecCCCceeEEEeecC-C
Confidence            444 67789999999999999999999        784    4677787 9995   54 899999999999999999 7


Q ss_pred             cceeeeecc--CCCeeEEEeecCCCcee
Q 024245          243 IPLTAMKVH--LEPGLECSMWRNPITMS  268 (270)
Q Consensus       243 ~~~~~~~~~--~~~v~~~~~s~~g~~ls  268 (270)
                      +.+..+...  ..+|++++||..|++|=
T Consensus       262 ~~~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  262 QELAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             cEEeeeccCcccCCceeEEEcccccEEE
Confidence            777777632  35899999999999873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=203.89  Aligned_cols=194  Identities=22%  Similarity=0.338  Sum_probs=164.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+++.|+||...|..+..+++|.+.++++.|+++++||+.+++..+.|.+|..  .|.+++|++  +...+++|+.|++|
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--dVlsva~s~--dn~qivSGSrDkTi  129 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--DVLSVAFST--DNRQIVSGSRDKTI  129 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC--ceEEEEecC--CCceeecCCCccee
Confidence            57889999999999999999999999999999999999999999999999994  499999999  98999999999999


Q ss_pred             EEEEccCCccCCCCccceeccc--ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      ++|++.....     .++....  ....+                                      +.|+|+....+++
T Consensus       130 klwnt~g~ck-----~t~~~~~~~~WVsc--------------------------------------vrfsP~~~~p~Iv  166 (315)
T KOG0279|consen  130 KLWNTLGVCK-----YTIHEDSHREWVSC--------------------------------------VRFSPNESNPIIV  166 (315)
T ss_pred             eeeeecccEE-----EEEecCCCcCcEEE--------------------------------------EEEcCCCCCcEEE
Confidence            9999876532     2222221  11111                                      5689986555556


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +++.|++|++||+++.+....+.        ||    .+.+..+. ++|+   |. ++++|+.||.+.+||++. ++.+.
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpD---Gs-lcasGgkdg~~~LwdL~~-~k~ly  228 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPD---GS-LCASGGKDGEAMLWDLNE-GKNLY  228 (315)
T ss_pred             EccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCC---CC-EEecCCCCceEEEEEccC-CceeE
Confidence            88899999999999988888888        77    45788887 9995   54 999999999999999999 78788


Q ss_pred             eeeccCCCeeEEEeecCCCcee
Q 024245          247 AMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+. |...|.+++|+|+...|.
T Consensus       229 sl~-a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  229 SLE-AFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             ecc-CCCeEeeEEecCCceeEe
Confidence            776 688999999999988775

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.7e-35  Score=230.48  Aligned_cols=193  Identities=19%  Similarity=0.286  Sum_probs=168.5

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+++.||.++|..++|+|+.++|+++|+|+++++|.+.+..++-.+.+|.  .+|..+.|+|  -|-+++|++.|++.+
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P--~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAP--RGYYFATASHDQTAR  518 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC--cceeeEEecC--CceEEEecCCCceee
Confidence            456799999999999999999999999999999999999999999999998  7799999999  889999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +|........+    .+.++-....+                                      +.|+|+..++.  +|+
T Consensus       519 LWs~d~~~PlR----ifaghlsDV~c--------------------------------------v~FHPNs~Y~a--TGS  554 (707)
T KOG0263|consen  519 LWSTDHNKPLR----IFAGHLSDVDC--------------------------------------VSFHPNSNYVA--TGS  554 (707)
T ss_pred             eeecccCCchh----hhcccccccce--------------------------------------EEECCcccccc--cCC
Confidence            99988764333    22222211111                                      56999997553  899


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      .|.+|++||+.+|..++.|.        ||    .+.+.+++ |+|   +|+ +|++|++||.|.+||+.+ +.++..+.
T Consensus       555 sD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp---~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~  616 (707)
T KOG0263|consen  555 SDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSP---CGR-YLASGDEDGLIKIWDLAN-GSLVKQLK  616 (707)
T ss_pred             CCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcC---CCc-eEeecccCCcEEEEEcCC-Ccchhhhh
Confidence            99999999999999999998        88    55788888 999   577 999999999999999999 89999999


Q ss_pred             ccCCCeeEEEeecCCCcee
Q 024245          250 VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       250 ~~~~~v~~~~~s~~g~~ls  268 (270)
                      +|++.|.++.||.||.+|.
T Consensus       617 ~Ht~ti~SlsFS~dg~vLa  635 (707)
T KOG0263|consen  617 GHTGTIYSLSFSRDGNVLA  635 (707)
T ss_pred             cccCceeEEEEecCCCEEE
Confidence            9999999999999998874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.9e-33  Score=192.23  Aligned_cols=227  Identities=15%  Similarity=0.251  Sum_probs=175.5

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .|.|+.++.+|+..|+++.|..+|+++++|++||+++|||++...+.+.+...   ++|+++..+|  +...|++|..+|
T Consensus        72 np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhp--nQteLis~dqsg  146 (311)
T KOG0315|consen   72 NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHP--NQTELISGDQSG  146 (311)
T ss_pred             CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecC--CcceEEeecCCC
Confidence            45799999999999999999999999999999999999999987777666543   7799999999  888999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCc-----eeeeccCCCCC----eEe
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGE-----TVDTDSLCDSK----DDV  156 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~  156 (270)
                      .|++||+....+..+++   +........+.+.+...... +...+.-..|++-...     .....++.|..    +.+
T Consensus       147 ~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l  223 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL  223 (311)
T ss_pred             cEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence            99999999886544222   22223444455554443333 2334455567776543     23345667776    789


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |||++++.  +++.|.+++||+.... +....++        +|    ...++..+ |+.   ||+ ||+||+.|+.+++
T Consensus       224 SPd~k~la--t~ssdktv~iwn~~~~~kle~~l~--------gh----~rWvWdc~-FS~---dg~-YlvTassd~~~rl  284 (311)
T KOG0315|consen  224 SPDVKYLA--TCSSDKTVKIWNTDDFFKLELVLT--------GH----QRWVWDCA-FSA---DGE-YLVTASSDHTARL  284 (311)
T ss_pred             CCCCcEEE--eecCCceEEEEecCCceeeEEEee--------cC----CceEEeee-ecc---Ccc-EEEecCCCCceee
Confidence            99998664  4556999999999876 4444455        56    46889988 997   566 9999999999999


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEee
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s  261 (270)
                      ||+.. ++.+..+.+|..+..+++..
T Consensus       285 W~~~~-~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  285 WDLSA-GKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccccc-CceeeecCCcccccEEEEee
Confidence            99999 88899999998888887764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-32  Score=205.52  Aligned_cols=223  Identities=17%  Similarity=0.292  Sum_probs=175.1

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ...|++++|+.+|.+||+|+.||.+++|+.. |..+.++..|.  ++|.++.|+.  .|++|++++-|+++.+||..++.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk--gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK--GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC--CceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence            3679999999999999999999999999966 78888888888  7799999999  99999999999999999999987


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCC--CceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      ...  .+.++..+    .+.+.+.....+.....  ...++.+..... ..++.+|.+    +.|.|.|. +|+ ++++|
T Consensus       310 ~~q--~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P-~~t~~GH~g~V~alk~n~tg~-LLa-S~SdD  380 (524)
T KOG0273|consen  310 VKQ--QFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRP-VKTFIGHHGEVNALKWNPTGS-LLA-SCSDD  380 (524)
T ss_pred             EEE--eeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCCc-ceeeecccCceEEEEECCCCc-eEE-EecCC
Confidence            654  33333322    23334444444433333  344455544444 445666777    89999996 343 78889


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-----CCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----QGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      ++++||.+........+.        +|..    .++.+. |+|+++     +....+++++.|++|++||+.. +.++.
T Consensus       381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~  446 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH  446 (524)
T ss_pred             CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence            999999999888888888        6743    466666 887642     1223899999999999999999 99999


Q ss_pred             eeeccCCCeeEEEeecCCCcee
Q 024245          247 AMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +|..|..+|.+++|+|+|+|+.
T Consensus       447 ~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEE
Confidence            9999999999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-32  Score=191.46  Aligned_cols=197  Identities=18%  Similarity=0.244  Sum_probs=164.1

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      .+..++++|++.|+.++..+. ...++++++|..+.+|++..     |..++.+.+|.+.  |..+..++  +|++.+++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~   81 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA   81 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence            456789999999999999985 56899999999999999864     5678899999955  99999999  99999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCe
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  162 (270)
                      +.|+++++||+.+++..+    .+.++......                                      ++|++|.+.
T Consensus        82 swD~~lrlWDl~~g~~t~----~f~GH~~dVls--------------------------------------va~s~dn~q  119 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTR----RFVGHTKDVLS--------------------------------------VAFSTDNRQ  119 (315)
T ss_pred             cccceEEEEEecCCcEEE----EEEecCCceEE--------------------------------------EEecCCCce
Confidence            999999999999985433    44444333221                                      568899886


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++  +|+.|.+|++|+.- +.+.+++..        +.  .+..+.++. |+|++. .. +|++++.|++|++||+++ .
T Consensus       120 iv--SGSrDkTiklwnt~-g~ck~t~~~--------~~--~~~WVscvr-fsP~~~-~p-~Ivs~s~DktvKvWnl~~-~  182 (315)
T KOG0279|consen  120 IV--SGSRDKTIKLWNTL-GVCKYTIHE--------DS--HREWVSCVR-FSPNES-NP-IIVSASWDKTVKVWNLRN-C  182 (315)
T ss_pred             ee--cCCCcceeeeeeec-ccEEEEEec--------CC--CcCcEEEEE-EcCCCC-Cc-EEEEccCCceEEEEccCC-c
Confidence            65  89999999999987 677777762        21  267899998 999842 23 999999999999999999 8


Q ss_pred             cceeeeeccCCCeeEEEeecCCCcee
Q 024245          243 IPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +....+.+|++.++.+++||||....
T Consensus       183 ~l~~~~~gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  183 QLRTTFIGHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             chhhccccccccEEEEEECCCCCEEe
Confidence            89999999999999999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=195.59  Aligned_cols=232  Identities=19%  Similarity=0.240  Sum_probs=191.4

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      |-++.+.++||.+.|.|+++.|..+++++|+.|++|+|||+.+++...++.+|.  ..|..+++++  -..+|++++.|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi--~~vr~vavS~--rHpYlFs~gedk  215 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI--ETVRGVAVSK--RHPYLFSAGEDK  215 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh--heeeeeeecc--cCceEEEecCCC
Confidence            446788999999999999999999999999999999999999999999999998  6699999999  667999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      .|+.||++.++.++    ...++-....+++....-... .....+..++||+++...+. .+.||..    +.+.|...
T Consensus       216 ~VKCwDLe~nkvIR----~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~-~l~GH~~~V~~V~~~~~dp  290 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIR----HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH-VLSGHTNPVASVMCQPTDP  290 (460)
T ss_pred             eeEEEechhhhhHH----HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE-EecCCCCcceeEEeecCCC
Confidence            99999999987655    556665555555554333322 22334556789999887665 6778887    66777666


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      .++  +|+.|++|++||++.|+...++.        .|    ...+.+++ .+|.+.    .+|+++.| .|+-|++.. 
T Consensus       291 qvi--t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~-  349 (460)
T KOG0285|consen  291 QVI--TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE-  349 (460)
T ss_pred             ceE--EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-
Confidence            554  78999999999999999888887        45    45677887 999644    78888776 799999999 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..+..+.+|..-|++++.+.||.+++
T Consensus       350 g~f~~nlsgh~~iintl~~nsD~v~~~  376 (460)
T KOG0285|consen  350 GEFLQNLSGHNAIINTLSVNSDGVLVS  376 (460)
T ss_pred             cchhhccccccceeeeeeeccCceEEE
Confidence            888888999999999999999999887

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=190.73  Aligned_cols=243  Identities=16%  Similarity=0.233  Sum_probs=179.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .|+-.+.||++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.  +.|..+.|.+  +++.|++++.|++
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--gAVM~l~~~~--d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS--GAVMELHGMR--DGSHILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc--ceeEeeeecc--CCCEEEEecCCce
Confidence            3566788999999999999999999999999999999965 346677788998  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  163 (270)
                      |+.||+++++..+    ..+.+......+.+....  ........+...+||++..+.+.......+.  +.|..++...
T Consensus       114 v~~wD~~tG~~~r----k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  114 VRGWDAETGKRIR----KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             EEEEecccceeee----hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence            9999999998755    555555444433322211  1223334556677999877766644332222  7788887766


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcC--------------------------------------CCCCCcccCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSC--------------------------------------GGSPNFSSKGRG  205 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------------~~~~~h~~~~~~  205 (270)
                      +  +|.-|+.|++||++.+...+.+....-                                      ....||......
T Consensus       190 ~--sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  190 I--SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             e--eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence            5  677889999999988877777761100                                      000122222222


Q ss_pred             eeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ....+. |+|+   +. .+.+|+.|..+++||... ...+..+.||.+.|++++|+|....|
T Consensus       268 nlL~cs-wsp~---~~-~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~ii  323 (338)
T KOG0265|consen  268 NLLKCS-WSPN---GT-KITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPII  323 (338)
T ss_pred             hcceee-ccCC---CC-ccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcEE
Confidence            334454 8874   44 899999999999999988 88999999999999999999987654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=185.33  Aligned_cols=229  Identities=15%  Similarity=0.178  Sum_probs=190.0

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC------ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      +.+.-....|..++|+|.|+++|+|+-|+...||++.+.      ...+.+.+|.  +.+.++.|.+  | +.|+|++.|
T Consensus        91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~d--D-~~ilT~SGD  165 (343)
T KOG0286|consen   91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLD--D-NHILTGSGD  165 (343)
T ss_pred             eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc--ceeEEEEEcC--C-CceEecCCC
Confidence            334445678999999999999999999999999999854      3456788898  6799999988  7 889999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      .+..+||+++++...    .+.++...+..+++.+.....++  .......+||++.+..++ .+.+|+.    ++|.|+
T Consensus       166 ~TCalWDie~g~~~~----~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q-tF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  166 MTCALWDIETGQQTQ----VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ-TFEGHESDINSVRFFPS  240 (343)
T ss_pred             ceEEEEEcccceEEE----EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeE-eecccccccceEEEccC
Confidence            999999999997755    78888888888887775333332  234456789999996554 7888887    999999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      |..+  ++|++|+++++||+|..+.+..+..          ......+++++ |+.+   |+ +|++|..|.++.+||.-
T Consensus       241 G~af--atGSDD~tcRlyDlRaD~~~a~ys~----------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  241 GDAF--ATGSDDATCRLYDLRADQELAVYSH----------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             CCee--eecCCCceeEEEeecCCcEEeeecc----------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeecc
Confidence            9754  3899999999999999999888873          22456788888 9984   66 99999999999999998


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      . ++.+..+.+|...|.++..+|||.-+.
T Consensus       304 k-~e~vg~L~GHeNRvScl~~s~DG~av~  331 (343)
T KOG0286|consen  304 K-GERVGVLAGHENRVSCLGVSPDGMAVA  331 (343)
T ss_pred             c-cceEEEeeccCCeeEEEEECCCCcEEE
Confidence            8 889999999999999999999998765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-31  Score=195.01  Aligned_cols=230  Identities=20%  Similarity=0.288  Sum_probs=184.5

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .++++.|+||+++|..++|+..|++|++++.|-.+++||..+ .++++.+.+|.  ..|.++.|-|  .|+++++++.|.
T Consensus       140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P--~gd~ilS~srD~  215 (406)
T KOG0295|consen  140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLP--LGDHILSCSRDN  215 (406)
T ss_pred             hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc--cceeeEEEEe--cCCeeeeccccc
Confidence            357889999999999999999999999999999999999987 57888888888  5599999999  889999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      +|+.|++.++.++.    ++.++......+.+...  +..++..+   ....|-+.+.+... .+.+|+.    ++|.|.
T Consensus       216 tik~We~~tg~cv~----t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~-~lR~hEh~vEci~wap~  288 (406)
T KOG0295|consen  216 TIKAWECDTGYCVK----TFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKA-ELREHEHPVECIAWAPE  288 (406)
T ss_pred             ceeEEecccceeEE----eccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhh-hhhccccceEEEEeccc
Confidence            99999999997755    77777777666665543  33333333   34456666653322 3444444    444432


Q ss_pred             --------------CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          160 --------------GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       160 --------------~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                                    +..++ .+++.|++|++||+.++.++.++.        ||.+    .+..++ |+|   .|+ ||+
T Consensus       289 ~~~~~i~~at~~~~~~~~l-~s~SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p---~Gk-yi~  350 (406)
T KOG0295|consen  289 SSYPSISEATGSTNGGQVL-GSGSRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSP---GGK-YIL  350 (406)
T ss_pred             ccCcchhhccCCCCCccEE-EeecccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcC---CCe-EEE
Confidence                          22233 479999999999999999999999        8855    566676 999   466 999


Q ss_pred             EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++.+|+++++||+++ .+++..+..|..-|+++.|..+-.++
T Consensus       351 ScaDDktlrvwdl~~-~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  351 SCADDKTLRVWDLKN-LQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             EEecCCcEEEEEecc-ceeeeccCCCcceeEEEecCCCCceE
Confidence            999999999999999 99999999999999999999876654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=4.6e-30  Score=178.79  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=176.3

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ..+.++++...+.|+.+...|+++.||+|+.. .|++||+++++  ++.++.+|.  ..|.++.|..  +|+.+++|++|
T Consensus        30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~--kNVtaVgF~~--dgrWMyTgseD  104 (311)
T KOG0315|consen   30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHT--KNVTAVGFQC--DGRWMYTGSED  104 (311)
T ss_pred             CeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccC--CceEEEEEee--cCeEEEecCCC
Confidence            36777888778899999999999999999876 59999998864  688899998  5599999999  99999999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~  160 (270)
                      |+++|||++...+.+  .+...   .....+-+..+..... ....+.+.+||+...............    +.+.|||
T Consensus       105 gt~kIWdlR~~~~qR--~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  105 GTVKIWDLRSLSCQR--NYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG  179 (311)
T ss_pred             ceEEEEeccCcccch--hccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence            999999999866544  22222   2223333333333333 333567788999877544433333222    8899999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcc------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      ..+.+  +...|..++|++-..+      ++.+++        .|    .+.++.+. ++|+   ++ +|++++.|.+++
T Consensus       180 sml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~--------ah----~~~il~C~-lSPd---~k-~lat~ssdktv~  240 (311)
T KOG0315|consen  180 SMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQ--------AH----NGHILRCL-LSPD---VK-YLATCSSDKTVK  240 (311)
T ss_pred             cEEEE--ecCCccEEEEEccCCCccccceEhhhee--------cc----cceEEEEE-ECCC---Cc-EEEeecCCceEE
Confidence            87765  4457999999987654      333444        45    45677777 9995   44 999999999999


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||+..+.-+....+++|...++.++||.||.||-
T Consensus       241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv  274 (311)
T KOG0315|consen  241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLV  274 (311)
T ss_pred             EEecCCceeeEEEeecCCceEEeeeeccCccEEE
Confidence            9999985477778899999999999999999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.6e-31  Score=180.87  Aligned_cols=235  Identities=14%  Similarity=0.187  Sum_probs=192.2

Q ss_pred             CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      |....+++++.||...|..++.+.|...+++|+.|..+.+||+++|+..+.+.+|.  +.|+.++|+.  +...+++|+.
T Consensus        46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~--aqVNtV~fNe--esSVv~Sgsf  121 (307)
T KOG0316|consen   46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL--AQVNTVRFNE--ESSVVASGSF  121 (307)
T ss_pred             ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc--ceeeEEEecC--cceEEEeccc
Confidence            44456899999999999999999999999999999999999999999999999999  5599999999  8889999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKY  163 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~  163 (270)
                      |.++++||-++...  +|+..+.........+.+..+... .....+..+.++++.+......+..... ++|+++++..
T Consensus       122 D~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~heIv-aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~  198 (307)
T KOG0316|consen  122 DSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEHEIV-AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCS  198 (307)
T ss_pred             cceeEEEEcccCCC--CccchhhhhcCceeEEEecccEEE-eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEE
Confidence            99999999998765  557777766666666666554332 3344556788999988776655544444 9999999988


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      ++  ++.|+++++.|-.+|+++..++        ||.+.  ..-...+ ++..+    ..+++|++||.|++||+.. ..
T Consensus       199 La--~~l~stlrLlDk~tGklL~sYk--------Ghkn~--eykldc~-l~qsd----thV~sgSEDG~Vy~wdLvd-~~  260 (307)
T KOG0316|consen  199 LA--SSLDSTLRLLDKETGKLLKSYK--------GHKNM--EYKLDCC-LNQSD----THVFSGSEDGKVYFWDLVD-ET  260 (307)
T ss_pred             EE--eeccceeeecccchhHHHHHhc--------ccccc--eeeeeee-ecccc----eeEEeccCCceEEEEEecc-ce
Confidence            75  6679999999999999999999        88653  2333333 55432    2899999999999999998 88


Q ss_pred             ceeeeeccCCC-eeEEEeecCC
Q 024245          244 PLTAMKVHLEP-GLECSMWRNP  264 (270)
Q Consensus       244 ~~~~~~~~~~~-v~~~~~s~~g  264 (270)
                      .+..+..+... |.+++++|.-
T Consensus       261 ~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  261 QISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             eeeeeccCCceeEEeeecccCc
Confidence            88888888777 7899999853

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=3.3e-32  Score=205.21  Aligned_cols=238  Identities=17%  Similarity=0.292  Sum_probs=183.5

Q ss_pred             CCCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      |.+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|.  .+|.+++|++  +|..++|++.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~--~g~~fLS~sf  278 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDASFNN--CGTSFLSASF  278 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch--hhhhhhhccc--cCCeeeeeec
Confidence            5578899999999999999999 899999999999999999876 89999999999  6799999999  9999999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEE-EEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFC-KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      |+.|++||+++|++..    .++......+ .+.+............+.+..||++.++.+.. +..|-.    +.|-++
T Consensus       279 D~~lKlwDtETG~~~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-Yd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-YDRHLGAILDITFVDE  353 (503)
T ss_pred             ceeeeeeccccceEEE----EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-HHhhhhheeeeEEccC
Confidence            9999999999998754    5544433332 33333322333344455667799999986553 222222    889999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeecc------CcCC--------------------------------CCCCccc
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ------NSCG--------------------------------GSPNFSS  201 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~--------------------------------~~~~h~~  201 (270)
                      |++++  +.++|++++||+.+..-++..+..      +++.                                ...||..
T Consensus       354 g~rFi--ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v  431 (503)
T KOG0282|consen  354 GRRFI--SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV  431 (503)
T ss_pred             CceEe--eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence            99876  567899999999876543322210      0000                                0024532


Q ss_pred             CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                        .+....+. |+|   ||+ +|++|+.||.+.+||.++ .+.+..++.|..++..+.|+|.
T Consensus       432 --aGys~~v~-fSp---DG~-~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  432 --AGYSCQVD-FSP---DGR-TLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             --cCceeeEE-EcC---CCC-eEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCC
Confidence              45566777 999   466 999999999999999999 8999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.8e-30  Score=207.86  Aligned_cols=235  Identities=23%  Similarity=0.330  Sum_probs=184.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC-CCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ...+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|.  ..|++++|+|  .++++++|+.|++
T Consensus       194 ~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~--~~v~~~~f~p--~g~~i~Sgs~D~t  269 (456)
T KOG0266|consen  194 NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS--TYVTSVAFSP--DGNLLVSGSDDGT  269 (456)
T ss_pred             hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC--CceEEEEecC--CCCEEEEecCCCc
Confidence            367778899999999999999999999999999999999 5568999999999  6699999999  8899999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCcccee-cCCCCceEEEeccCcee-eeccCC--CC-C---eEecCC
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETV-DTDSLC--DS-K---DDVPAE  159 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~~-~---~~~s~~  159 (270)
                      |++||++++++.+    .+..+......+.+......... ...+...+||+.++... ...+.+  .. .   +.|+|+
T Consensus       270 vriWd~~~~~~~~----~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~  345 (456)
T KOG0266|consen  270 VRIWDVRTGECVR----KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN  345 (456)
T ss_pred             EEEEeccCCeEEE----eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC
Confidence            9999999987654    66666555544444333332222 33566778999988842 222222  12 1   899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +.+++  ++..|+.+++||++.+.....+.        +|.... ....+.. +.+   ++. ++++|+.|+.|++||+.
T Consensus       346 ~~~ll--~~~~d~~~~~w~l~~~~~~~~~~--------~~~~~~-~~~~~~~-~~~---~~~-~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  346 GKYLL--SASLDRTLKLWDLRSGKSVGTYT--------GHSNLV-RCIFSPT-LST---GGK-LIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             CcEEE--EecCCCeEEEEEccCCcceeeec--------ccCCcc-eeEeccc-ccC---CCC-eEEEEeCCceEEEEeCC
Confidence            99877  46678999999999999999988        675431 1222332 333   455 99999999999999999


Q ss_pred             CCCcceeeeecc-CCCeeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVH-LEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~ls  268 (270)
                      + +..+..+.+| ...+..++++|...++.
T Consensus       410 s-~~~~~~l~~h~~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  410 S-GGILQRLEGHSKAAVSDLSSHPTENLIA  438 (456)
T ss_pred             c-cchhhhhcCCCCCceeccccCCCcCeee
Confidence            9 8889999999 88999999999887764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=5.5e-30  Score=195.36  Aligned_cols=248  Identities=15%  Similarity=0.161  Sum_probs=181.1

Q ss_pred             CCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         6 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ||-+.-.+++.|..-|+|+.|+|||+++++++.||.|.+||-.+++.+..+.   +|.  +.|.+++|+|  |+..++|+
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsP--Ds~~~~T~  253 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSP--DSTQFLTV  253 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECC--CCceEEEe
Confidence            5667788899999999999999999999999999999999999999999997   676  7799999999  99999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s  157 (270)
                      +.|.+++|||+.+.++.+  .+.+... .....+.+.+... ......++...+++..... +...+.||..    +..+
T Consensus       254 SaDkt~KIWdVs~~slv~--t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVS--TWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS  329 (603)
T ss_pred             cCCceEEEEEeeccceEE--EeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence            999999999999997765  2222111 2222233333322 2334445566677777777 7778889988    8899


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeee-----------eccC----------------------cCC----CCCCcc
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTR-----------LHQN----------------------SCG----GSPNFS  200 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----------~~~~----------------------~~~----~~~~h~  200 (270)
                      |++++++  +|+.||.|.-||..++..-+.           +...                      ..+    ...++.
T Consensus       330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q  407 (603)
T KOG0318|consen  330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ  407 (603)
T ss_pred             CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence            9998766  799999999999876542211           1000                      000    000000


Q ss_pred             --------------------------------cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-cceee
Q 024245          201 --------------------------------SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTA  247 (270)
Q Consensus       201 --------------------------------~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~~~~~  247 (270)
                                                      .+..-...+++ ++|+   +. .++.|+.||.|+||.+.... .....
T Consensus       408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA-v~~~---~~-~vaVGG~Dgkvhvysl~g~~l~ee~~  482 (603)
T KOG0318|consen  408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA-VSPD---GS-EVAVGGQDGKVHVYSLSGDELKEEAK  482 (603)
T ss_pred             ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE-EcCC---CC-EEEEecccceEEEEEecCCcccceee
Confidence                                            00001123444 7774   44 99999999999999998632 34445


Q ss_pred             eeccCCCeeEEEeecCCCcee
Q 024245          248 MKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       248 ~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..|.++|++++||||+.||.
T Consensus       483 ~~~h~a~iT~vaySpd~~yla  503 (603)
T KOG0318|consen  483 LLEHRAAITDVAYSPDGAYLA  503 (603)
T ss_pred             eecccCCceEEEECCCCcEEE
Confidence            667999999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=6.8e-30  Score=202.46  Aligned_cols=229  Identities=18%  Similarity=0.274  Sum_probs=180.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      -+-..+||...+++++++|||+++|+|++||.|+|||..++-|..+|..|.  ..|+++.|+.  .++.+++.+.||+|+
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~--~g~~llssSLDGtVR  417 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTA--RGNVLLSSSLDGTVR  417 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC--CceEEEEEEe--cCCEEEEeecCCeEE
Confidence            345667999999999999999999999999999999999999999999999  6799999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceec-ccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245           90 CWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~  162 (270)
                      .||+...+..+    ++.. .+..+.+++.+.+.....+.+.  -.+.+|++.+++.+. .+.||+.    ++|+|++..
T Consensus       418 AwDlkRYrNfR----Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-iLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  418 AWDLKRYRNFR----TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-ILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             eeeecccceee----eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee-hhcCCCCcceeeEEccccCe
Confidence            99999887654    3322 2445566677666655544443  345668999887665 7888988    789999983


Q ss_pred             EEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                       + ++++.|.+|++||+-.. ..+.++.             ....++.+. |+|+   |+ .|+++..||.|.+||... 
T Consensus       493 -L-aS~SWDkTVRiW~if~s~~~vEtl~-------------i~sdvl~vs-frPd---G~-elaVaTldgqItf~d~~~-  551 (893)
T KOG0291|consen  493 -L-ASGSWDKTVRIWDIFSSSGTVETLE-------------IRSDVLAVS-FRPD---GK-ELAVATLDGQITFFDIKE-  551 (893)
T ss_pred             -E-EeccccceEEEEEeeccCceeeeEe-------------eccceeEEE-EcCC---CC-eEEEEEecceEEEEEhhh-
Confidence             3 48999999999998654 3455565             345788888 9995   55 899999999999999886 


Q ss_pred             Ccceeeeec--------------------cCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKV--------------------HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~--------------------~~~~v~~~~~s~~g~~ls  268 (270)
                      ...+..+.+                    -....+.+++|+||..|-
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il  598 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL  598 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence            332222111                    124788999999998874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=8.8e-30  Score=186.09  Aligned_cols=238  Identities=13%  Similarity=0.174  Sum_probs=184.4

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      -+.+|..|++.|.+++.+|+.+++++|+.|..-.||++.++.....+.+|.  +.|+++.|+.  +|.+|+||..+|.|+
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK--DSVt~~~Fsh--dgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK--DSVTCCSFSH--DGTLLATGDMSGKVL  131 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC--CceEEEEEcc--CceEEEecCCCccEE
Confidence            467899999999999999999999999999999999999999999999999  7799999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~  162 (270)
                      ||+..++....    .+.........+  .+++....+..   .+..-.|.+..+ .....+.||..    -.|.|+|++
T Consensus       132 v~~~stg~~~~----~~~~e~~dieWl--~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr  204 (399)
T KOG0296|consen  132 VFKVSTGGEQW----KLDQEVEDIEWL--KWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKR  204 (399)
T ss_pred             EEEcccCceEE----EeecccCceEEE--EecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCce
Confidence            99999986543    222111122222  23334433333   344455677665 55667788877    689999998


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeecc------CcCCCC----------------------------------------
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQ------NSCGGS----------------------------------------  196 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~----------------------------------------  196 (270)
                      ++  ++..||+|++|++.+++++.++..      ++....                                        
T Consensus       205 ~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  205 IL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             EE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence            76  688899999999999998877761      110000                                        


Q ss_pred             -------------------------------------CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          197 -------------------------------------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       197 -------------------------------------~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                                                           ..|.-.....+..+. |.++ .    +|++++.+|.|+.||.|
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaR  356 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK-WLNT-D----YLLTACANGKVRQWDAR  356 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE-EcCc-c----hheeeccCceEEeeecc
Confidence                                                 122222334566676 7762 2    89999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      + ++++..+.||...|.+++++|+++++
T Consensus       357 t-G~l~~~y~GH~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  357 T-GQLKFTYTGHQMGILDFALSPQKRLV  383 (399)
T ss_pred             c-cceEEEEecCchheeEEEEcCCCcEE
Confidence            9 99999999999999999999998875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-30  Score=190.09  Aligned_cols=236  Identities=17%  Similarity=0.242  Sum_probs=184.8

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +|.+.+.+.||..+|+.+-|+|+-..++++++|++|++||..++++...+++|.  +.|..|+|+.  .|.+|++++.|-
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt--~sv~di~~~a--~Gk~l~tcSsDl  172 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT--DSVFDISFDA--SGKYLATCSSDL  172 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc--cceeEEEEec--CccEEEecCCcc
Confidence            346778899999999999999999999999999999999999999999999999  6699999999  899999999999


Q ss_pred             cEEEEEccCC-ccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245           87 TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (270)
Q Consensus        87 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~  160 (270)
                      .+++||..+- ++    +....++.....+..+....... ...-...+..|++.++..+. ++.+|..    +..+.||
T Consensus       173 ~~~LWd~~~~~~c----~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~DG  247 (406)
T KOG0295|consen  173 SAKLWDFDTFFRC----IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQDG  247 (406)
T ss_pred             chhheeHHHHHHH----HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEecCCe
Confidence            9999999863 22    22444444444333333222221 22223445678999888876 6777777    5666666


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC------------CCCCceEEEEec
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------KSQGFVNVLAGY  228 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~------------~~~g~~~l~~~~  228 (270)
                      .  ++++++.|.++++|-+.++++...+.        .|..+    +-+++ |.|.            .+.++ ++++++
T Consensus       248 t--i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh~----vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~S  311 (406)
T KOG0295|consen  248 T--IIASCSNDQTLRVWVVATKQCKAELR--------EHEHP----VECIA-WAPESSYPSISEATGSTNGGQ-VLGSGS  311 (406)
T ss_pred             e--EEEecCCCceEEEEEeccchhhhhhh--------ccccc----eEEEE-ecccccCcchhhccCCCCCcc-EEEeec
Confidence            4  45588899999999999998888877        56443    33333 4442            12245 999999


Q ss_pred             CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          229 EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .|++|++||+.+ +.++.++.+|.+.|.+++|+|.|+||-
T Consensus       312 rDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~  350 (406)
T KOG0295|consen  312 RDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYIL  350 (406)
T ss_pred             ccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEE
Confidence            999999999999 899999999999999999999999975

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.5e-31  Score=194.75  Aligned_cols=231  Identities=14%  Similarity=0.265  Sum_probs=172.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++++|.||++.|.|+.|.  .+.+++|+.|.+|+|||+++++++.++..|.  +.|..+.|+.    +++++++.|.++
T Consensus       228 ~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHc--eaVLhlrf~n----g~mvtcSkDrsi  299 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC--EAVLHLRFSN----GYMVTCSKDRSI  299 (499)
T ss_pred             HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhc--ceeEEEEEeC----CEEEEecCCcee
Confidence            5788999999999999995  5599999999999999999999999999999  6699999987    799999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEe
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVA  167 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~  167 (270)
                      .+||+....-. .....+.++........+... ....+...-....|++.+.+.++ ++.+|.. ++...-...+++ +
T Consensus       300 aVWdm~sps~i-t~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvR-tl~gHkRGIAClQYr~rlvV-S  375 (499)
T KOG0281|consen  300 AVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVR-TLNGHKRGIACLQYRDRLVV-S  375 (499)
T ss_pred             EEEeccCchHH-HHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeeh-hhhcccccceehhccCeEEE-e
Confidence            99999865421 111233444444443333322 12222333445678888887776 6677777 554444334554 8


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc----
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----  243 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~----  243 (270)
                      |+.|.+|++||+..|.+++.++        ||..    .+-++. |..     + .+++|++||+|++||+.....    
T Consensus       376 GSSDntIRlwdi~~G~cLRvLe--------GHEe----LvRciR-Fd~-----k-rIVSGaYDGkikvWdl~aaldpra~  436 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLE--------GHEE----LVRCIR-FDN-----K-RIVSGAYDGKIKVWDLQAALDPRAP  436 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHh--------chHH----hhhhee-ecC-----c-eeeeccccceEEEEecccccCCccc
Confidence            9999999999999999999999        8844    666776 863     2 899999999999999987433    


Q ss_pred             ----ceeeeeccCCCeeEEEeecCCCceecC
Q 024245          244 ----PLTAMKVHLEPGLECSMWRNPITMSEH  270 (270)
Q Consensus       244 ----~~~~~~~~~~~v~~~~~s~~g~~ls~~  270 (270)
                          ++..+..|++.|..+.|..-...-|.|
T Consensus       437 ~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssH  467 (499)
T KOG0281|consen  437 ASTLCLRTLVEHSGRVFRLQFDEFQIISSSH  467 (499)
T ss_pred             ccchHHHhhhhccceeEEEeecceEEEeccC
Confidence                455666788899988887544433333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=191.79  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=168.3

Q ss_pred             CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      ...|-+..+++..|++.|+-+.||++|++||+++.|.+..+|++...   +..+++.+|.  .+|..+.|+|  |.++|+
T Consensus       210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSP--DdryLl  285 (519)
T KOG0293|consen  210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSP--DDRYLL  285 (519)
T ss_pred             ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--CceEEEEECC--CCCeEE
Confidence            34566788999999999999999999999999999999999998654   3477888888  6799999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---E-------------------Ee
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---Y-------------------ER  138 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~  138 (270)
                      +++.|..+.+||+.++.+..    ..+.. ..+...++.+.+++.....|+.++.   |                   |+
T Consensus       286 aCg~~e~~~lwDv~tgd~~~----~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRH----LYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDL  360 (519)
T ss_pred             ecCchHheeeccCCcchhhh----hcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEE
Confidence            99999999999999997654    22111 1222223333333333333332221   2                   22


Q ss_pred             c---cCceeee-------------------ccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcC
Q 024245          139 E---VGETVDT-------------------DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC  193 (270)
Q Consensus       139 ~---~~~~~~~-------------------~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  193 (270)
                      .   +++.+..                   ....+..   .++|.++++.++  .-.+..|++||+.....++++.    
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~----  434 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYF----  434 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhh----
Confidence            1   1111100                   1111222   566777775554  3346888999998888888888    


Q ss_pred             CCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                          ||....  .+..-+ |.-.  +.. ++++|++|+.|+||+..+ ++++..+.||...|++++|+|....
T Consensus       435 ----Ghkq~~--fiIrSC-Fgg~--~~~-fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  435 ----GHKQGH--FIIRSC-FGGG--NDK-FIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             ----cccccc--eEEEec-cCCC--Ccc-eEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHH
Confidence                775432  333333 6643  333 999999999999999999 9999999999999999999996654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.8e-31  Score=195.81  Aligned_cols=227  Identities=16%  Similarity=0.268  Sum_probs=179.3

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      ..++.|.++|+++.|+++|.+++||+.+|.|++|+.. ...++.+..|.. ..|.+++|+|  +...+++++.||+|+||
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIW  207 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEE
Confidence            4577899999999999999999999999999999976 445555555542 5699999999  77999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      |....+...    .+.++.....  ++++++....++.++   .+.+||.+++.++. .+.+|.+    +.|++++++|+
T Consensus       208 df~~~kee~----vL~GHgwdVk--svdWHP~kgLiasgskDnlVKlWDprSg~cl~-tlh~HKntVl~~~f~~n~N~Ll  280 (464)
T KOG0284|consen  208 DFRMPKEER----VLRGHGWDVK--SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA-TLHGHKNTVLAVKFNPNGNWLL  280 (464)
T ss_pred             eccCCchhh----eeccCCCCcc--eeccCCccceeEEccCCceeEeecCCCcchhh-hhhhccceEEEEEEcCCCCeeE
Confidence            998776543    4455554444  445555554444443   45668888887776 5556666    89999996544


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                        ++++|..++++|+++.+.+.++.        +|.    ..++++. |+|-..  . +|.+|+.||.|..|.+.. .++
T Consensus       281 --t~skD~~~kv~DiR~mkEl~~~r--------~Hk----kdv~~~~-WhP~~~--~-lftsgg~Dgsvvh~~v~~-~~p  341 (464)
T KOG0284|consen  281 --TGSKDQSCKVFDIRTMKELFTYR--------GHK----KDVTSLT-WHPLNE--S-LFTSGGSDGSVVHWVVGL-EEP  341 (464)
T ss_pred             --EccCCceEEEEehhHhHHHHHhh--------cch----hhheeec-cccccc--c-ceeeccCCCceEEEeccc-ccc
Confidence              78899999999999988899988        784    4678887 999733  3 999999999999999996 555


Q ss_pred             eeee-eccCCCeeEEEeecCCCcee
Q 024245          245 LTAM-KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       245 ~~~~-~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..+ .+|...|++++|+|=|..|.
T Consensus       342 ~~~i~~AHd~~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  342 LGEIPPAHDGEIWSLAYHPLGHILA  366 (464)
T ss_pred             ccCCCcccccceeeeeccccceeEe
Confidence            5555 47999999999999998875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.8e-29  Score=174.83  Aligned_cols=229  Identities=15%  Similarity=0.245  Sum_probs=176.8

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      +.+++|.+.|.+++|+-+|..|++|+.|+++.+|+++..+....+....+.+.|..++|.|.+. +.|++++.|++|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEE
Confidence            6788999999999999999999999999999999999876665544333326799999999644 889999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCC-CC-eEecCCCCeEEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCD-SK-DDVPAEGPKYMAV  166 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~-~~~s~~~~~~~~~  166 (270)
                      |++.+++..    ........   +...+.+.+.....++.   +.++|.++.+......... .. ++|+-++..++++
T Consensus        93 d~r~~k~~~----~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   93 DIRSGKCTA----RIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EeccCcEEE----EeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence            999997643    33222222   23344455444444333   3345666555444322222 22 8888777777765


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +|  .|.|.|....+.++++.++        +|.    ..|.++. |+|   +|+ +||+|+.|..+.+||+.. --+++
T Consensus       166 ~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p---~Gr-yfA~GsADAlvSLWD~~E-LiC~R  225 (313)
T KOG1407|consen  166 NG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDP---DGR-YFATGSADALVSLWDVDE-LICER  225 (313)
T ss_pred             cC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECC---CCc-eEeeccccceeeccChhH-hhhhe
Confidence            55  5999999999999999999        784    5788998 999   466 999999999999999998 78899


Q ss_pred             eeeccCCCeeEEEeecCCCcee
Q 024245          247 AMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+..+.-+|..++||.||++|.
T Consensus       226 ~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             eeccccCceEEEEeccCcceee
Confidence            9999999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-29  Score=172.52  Aligned_cols=191  Identities=17%  Similarity=0.317  Sum_probs=156.0

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      |.+.++.+..|+++|+++.|+-+|+|.++++.|.+|++|+...+.+++++.+|..+  |..++.+.  +...|++|+.|+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgDk   81 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGDK   81 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCCc
Confidence            44578889999999999999999999999999999999999999999999999965  99999988  888999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .+.+||+++++..+    .+.++......+                                      .|+.+..  +++
T Consensus        82 ~v~vwDV~TGkv~R----r~rgH~aqVNtV--------------------------------------~fNeesS--Vv~  117 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDR----RFRGHLAQVNTV--------------------------------------RFNEESS--VVA  117 (307)
T ss_pred             eEEEEEcccCeeee----ecccccceeeEE--------------------------------------EecCcce--EEE
Confidence            99999999998765    555555444333                                      3555554  344


Q ss_pred             ecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      +|+.|.++++||.++..  +++.+..            ....+.++. ...     . .|++|+.||+++.||++. ++.
T Consensus       118 SgsfD~s~r~wDCRS~s~ePiQilde------------a~D~V~Si~-v~~-----h-eIvaGS~DGtvRtydiR~-G~l  177 (307)
T KOG0316|consen  118 SGSFDSSVRLWDCRSRSFEPIQILDE------------AKDGVSSID-VAE-----H-EIVAGSVDGTVRTYDIRK-GTL  177 (307)
T ss_pred             eccccceeEEEEcccCCCCccchhhh------------hcCceeEEE-ecc-----c-EEEeeccCCcEEEEEeec-cee
Confidence            89999999999998654  6666653            345677766 543     2 899999999999999998 665


Q ss_pred             eeeeeccCCCeeEEEeecCCCce
Q 024245          245 LTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..-.-+  .+|++++|++||...
T Consensus       178 ~sDy~g--~pit~vs~s~d~nc~  198 (307)
T KOG0316|consen  178 SSDYFG--HPITSVSFSKDGNCS  198 (307)
T ss_pred             ehhhcC--CcceeEEecCCCCEE
Confidence            555544  599999999998753

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.3e-28  Score=173.84  Aligned_cols=232  Identities=16%  Similarity=0.240  Sum_probs=171.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE----------------------------------
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS----------------------------------   54 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~----------------------------------   54 (270)
                      ++.+.++.-...|+++.|+++|.+|++++.|.+++|||..+++.++                                  
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            3455666677899999999999999999999999999998754443                                  


Q ss_pred             ----------EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc
Q 024245           55 ----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA  124 (270)
Q Consensus        55 ----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (270)
                                .|.+|.  ..|.+++.+|  .++.+++++.|++|++||++..++..    .+.......+  +.+.....
T Consensus        85 Lsl~dNkylRYF~GH~--~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~--AfDp~GLi  154 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHK--KRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIA--AFDPEGLI  154 (311)
T ss_pred             EEeecCceEEEcCCCC--ceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcce--eECCCCcE
Confidence                      345666  6699999999  77999999999999999999876644    2222222333  33333444


Q ss_pred             ceecCCC-CceEEEeccC-ceeeeccCC----CCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC
Q 024245          125 NAKQANE-PKDCYEREVG-ETVDTDSLC----DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (270)
Q Consensus       125 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~----~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  195 (270)
                      .+++.++ .+.++|++.. +.+...+.-    +..   +.|||||+++|+.+.  .+.+++.|.-+|..+.++.      
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs------  226 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS------  226 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe------
Confidence            4444444 6677888764 222222221    122   999999999998554  5899999999999999998      


Q ss_pred             CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM  267 (270)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  267 (270)
                        ++....... .... |.|+   ++ ++++|+.||+|.+|++++ +..+..+.+ +..++.++.|+|.-..+
T Consensus       227 --~~~~~~~~~-~~a~-ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf  290 (311)
T KOG1446|consen  227 --GYPNAGNLP-LSAT-FTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMF  290 (311)
T ss_pred             --eccCCCCcc-eeEE-ECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeee
Confidence              554433323 3444 9995   55 999999999999999999 888888888 68899999999975443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-29  Score=194.51  Aligned_cols=232  Identities=15%  Similarity=0.176  Sum_probs=200.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+++..|...|.++.|+|...+++++-..|.|.|||.++...++.+....  .+|.+..|-+  -.+++++|+.|..|+
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIR   80 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEE
Confidence            446677799999999999999999999999999999999999999998877  7799999999  668999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      +|+.++++.+.    .++.+.....++.+.+.... ....+...+..|+.+........++||..    ++|.|....-+
T Consensus        81 Vfnynt~ekV~----~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF  156 (794)
T KOG0276|consen   81 VFNYNTGEKVK----TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF  156 (794)
T ss_pred             EEecccceeeE----EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce
Confidence            99999997755    88888888887776654333 34445566778999999899999999999    89999998888


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      + +++-|++|+||.+.+..+..+++        ||..    .+.++. |-|.+ |.. +|++|+.|.+|+|||..+ ..|
T Consensus       157 a-S~sLDrTVKVWslgs~~~nfTl~--------gHek----GVN~Vd-yy~~g-dkp-ylIsgaDD~tiKvWDyQt-k~C  219 (794)
T KOG0276|consen  157 A-SASLDRTVKVWSLGSPHPNFTLE--------GHEK----GVNCVD-YYTGG-DKP-YLISGADDLTIKVWDYQT-KSC  219 (794)
T ss_pred             e-eeeccccEEEEEcCCCCCceeee--------cccc----CcceEE-eccCC-Ccc-eEEecCCCceEEEeecch-HHH
Confidence            6 78889999999999999999999        8843    567777 77752 334 999999999999999999 999


Q ss_pred             eeeeeccCCCeeEEEeecCCCc
Q 024245          245 LTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      ++++.||...|..+.|+|.=..
T Consensus       220 V~TLeGHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  220 VQTLEGHTNNVSFVFFHPELPI  241 (794)
T ss_pred             HHHhhcccccceEEEecCCCcE
Confidence            9999999999999999996443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.5e-29  Score=201.24  Aligned_cols=167  Identities=21%  Similarity=0.356  Sum_probs=144.8

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++-.++||..+|+++.|+|.|-|+||||.|++-++|......+.+.+.+|..  -|.|+.|+|  +.+++++||.|.+|
T Consensus       484 s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls--DV~cv~FHP--Ns~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  484 SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS--DVDCVSFHP--NSNYVATGSSDRTV  559 (707)
T ss_pred             eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc--ccceEEECC--cccccccCCCCceE
Confidence            35667899999999999999999999999999999999999999999999994  499999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++||+.+|..++    .+.++.....+                                      ++|||+|.++.  +|
T Consensus       560 RlWDv~~G~~VR----iF~GH~~~V~a--------------------------------------l~~Sp~Gr~La--Sg  595 (707)
T KOG0263|consen  560 RLWDVSTGNSVR----IFTGHKGPVTA--------------------------------------LAFSPCGRYLA--SG  595 (707)
T ss_pred             EEEEcCCCcEEE----EecCCCCceEE--------------------------------------EEEcCCCceEe--ec
Confidence            999999997655    33333322221                                      66999998654  79


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.||.|++||+.+++++..+.        +|    .+.+.++. |+.+   |. .||+|+.|.+|++||+..
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~--------~H----t~ti~Sls-FS~d---g~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLK--------GH----TGTIYSLS-FSRD---GN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhh--------cc----cCceeEEE-EecC---CC-EEEecCCCCeEEEEEchh
Confidence            999999999999999999999        77    56788888 9985   44 999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=4.9e-28  Score=182.40  Aligned_cols=232  Identities=15%  Similarity=0.223  Sum_probs=185.3

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +..++.+|..|+++|.++.|+..|.||++++.|+++.+||..++...+.+..|.  .+-..+.|..  + ..+++++.|+
T Consensus       265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s--~~~lDVdW~~--~-~~F~ts~td~  339 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS--APALDVDWQS--N-DEFATSSTDG  339 (524)
T ss_pred             CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc--CCccceEEec--C-ceEeecCCCc
Confidence            345778899999999999999999999999999999999999999999999997  4457899987  6 7899999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCC-
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG-  160 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~-  160 (270)
                      .|+|+.+...    .|+.++.++...+..+........ ....+.+...+|......... .+.+|..    +.|+|.| 
T Consensus       340 ~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  340 CIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-DLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             eEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-hhhhhccceeeEeecCCCC
Confidence            9999999876    556688787777766665543332 223334555667665554433 4555554    6666654 


Q ss_pred             -------CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          161 -------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       161 -------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                             ...++ +++.|++|++||+..+.++.+|.        .|    ...+++++ |+|+   |+ |+|+|+.||.|
T Consensus       415 v~~n~~~~~~l~-sas~dstV~lwdv~~gv~i~~f~--------kH----~~pVysva-fS~~---g~-ylAsGs~dg~V  476 (524)
T KOG0273|consen  415 VTSNPNMNLMLA-SASFDSTVKLWDVESGVPIHTLM--------KH----QEPVYSVA-FSPN---GR-YLASGSLDGCV  476 (524)
T ss_pred             ccCCCcCCceEE-EeecCCeEEEEEccCCceeEeec--------cC----CCceEEEE-ecCC---Cc-EEEecCCCCee
Confidence                   33444 56679999999999999999998        57    44789998 9994   66 99999999999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+|+.++ ++.++.+.+ .+.|..++|+.+|.+|.
T Consensus       477 ~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  477 HIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLG  509 (524)
T ss_pred             Eeccccc-hheeEeecC-CCeEEEEEEcCCCCEEE
Confidence            9999999 899999886 56799999999998875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-28  Score=170.52  Aligned_cols=229  Identities=17%  Similarity=0.226  Sum_probs=168.6

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .++||+.+++.+.|+.+|.+|++++.|....||-..+|+.+.++.+|.  +.|+++....  +..++++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt--GavW~~Did~--~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT--GAVWCCDIDW--DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC--ceEEEEEecC--CcceeeeccccceeEEEE
Confidence            488999999999999999999999999999999998999999999999  5699999998  889999999999999999


Q ss_pred             ccCCccCCCCccceecc-cceEEEEeeccCCccce----ecCCCCceEEEeccC-------ceeeeccCCCCC---eEec
Q 024245           93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANA----KQANEPKDCYEREVG-------ETVDTDSLCDSK---DDVP  157 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~s  157 (270)
                      +++|+++.    .++.. ....+.++.........    ....+.+.+++++..       +...........   ..|.
T Consensus        81 v~tGk~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 VETGKQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             cCCCcEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            99998643    33322 22222233322211111    112234455666532       222222222222   7899


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      |-++.++  +|.+||.|.+||+++++.+..-..       -|    ...+..++ ++|+..    ++++++.|.+-++||
T Consensus       157 ~l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  157 PLGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVD  218 (327)
T ss_pred             ccCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeee
Confidence            9998766  588899999999999865443322       45    33678887 998533    999999999999999


Q ss_pred             cCCCCc-------------------------------------------------------ceeeeeccCCCeeEEEeec
Q 024245          238 IRNPGI-------------------------------------------------------PLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       238 ~~~~~~-------------------------------------------------------~~~~~~~~~~~v~~~~~s~  262 (270)
                      +++ -+                                                       .+...++|-++|++++|+|
T Consensus       219 ~~t-l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  219 VRT-LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             ccc-eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence            875 11                                                       1234678889999999999


Q ss_pred             CCCcee
Q 024245          263 NPITMS  268 (270)
Q Consensus       263 ~g~~ls  268 (270)
                      +|+-.+
T Consensus       298 dGksYs  303 (327)
T KOG0643|consen  298 DGKSYS  303 (327)
T ss_pred             CCcccc
Confidence            997654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=6.8e-30  Score=189.21  Aligned_cols=215  Identities=16%  Similarity=0.231  Sum_probs=169.1

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      +..|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|.  ++|.++.|++  ++.+++||+.+|.|++|+.....
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence            4579999999999999999999999999985544444556787  7799999999  99999999999999999987654


Q ss_pred             cCCCCccceeccc-ceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           98 LSSNPSLTIKTNS-YHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      ..     .+..+. ..+..+++.. ..........+...+||....+..+ .+.+|.-    +.|+|... ++ ++|++|
T Consensus       172 Vk-----~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kg-Li-asgskD  243 (464)
T KOG0284|consen  172 VK-----IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKG-LI-ASGSKD  243 (464)
T ss_pred             hH-----HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCCccc-ee-EEccCC
Confidence            32     222222 2223233322 2223344556777888887665433 3366665    89999875 33 478899


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      ..|++||.++++++.++.        +|    ...++.+. |+|+++    +|+|+|.|..++++|+++ -+.+.++++|
T Consensus       244 nlVKlWDprSg~cl~tlh--------~H----KntVl~~~-f~~n~N----~Llt~skD~~~kv~DiR~-mkEl~~~r~H  305 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLH--------GH----KNTVLAVK-FNPNGN----WLLTGSKDQSCKVFDIRT-MKELFTYRGH  305 (464)
T ss_pred             ceeEeecCCCcchhhhhh--------hc----cceEEEEE-EcCCCC----eeEEccCCceEEEEehhH-hHHHHHhhcc
Confidence            999999999999999998        67    44788998 999643    999999999999999997 7889999999


Q ss_pred             CCCeeEEEeec
Q 024245          252 LEPGLECSMWR  262 (270)
Q Consensus       252 ~~~v~~~~~s~  262 (270)
                      ...|+++.|+|
T Consensus       306 kkdv~~~~WhP  316 (464)
T KOG0284|consen  306 KKDVTSLTWHP  316 (464)
T ss_pred             hhhheeecccc
Confidence            99999999999

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.9e-27  Score=180.59  Aligned_cols=229  Identities=20%  Similarity=0.357  Sum_probs=176.7

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ++++++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|.  ..+..+.|+|  +++++++++.|+.|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~~~~i~i   77 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAASA--DGTYLASGSSDKTIRL   77 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--cceeEEEECC--CCCEEEEEcCCCeEEE
Confidence            56788999999999999999999999999999999999888888888887  5588999999  8889999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      ||+.+++...    .+..+......+............. .+...+|++...+.... +..|..    ++|+|++..++ 
T Consensus        78 ~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~-  151 (289)
T cd00200          78 WDLETGECVR----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTFVA-  151 (289)
T ss_pred             EEcCcccceE----EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE-eccCCCcEEEEEEcCcCCEEE-
Confidence            9999864432    3444443344444443323333333 56677788876554443 334543    88999976443 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +++.|+.|++||+++++.+..+.        .|    ...+.++. |+|+   ++ .+++++.||.|++||+++ ++++
T Consensus       152 -~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~  212 (289)
T cd00200         152 -SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCL  212 (289)
T ss_pred             -EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Ccee
Confidence             45568999999999888888877        44    33577777 9985   44 788888899999999998 7888


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..+..|...+.+++|+|++.++.
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEE
Confidence            88888889999999999876653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=168.33  Aligned_cols=192  Identities=20%  Similarity=0.201  Sum_probs=153.8

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC---ceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ..++.+++|++.|+.++|+|. |..||+++.|+.|++|+...+   .+...+. +|.  ..|.+++|+|  .|++|+++|
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS   80 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS   80 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence            467889999999999999997 889999999999999999853   3444443 455  6699999999  999999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      .|.++.||.-..++...  +.                                          .++||++    ++|+++
T Consensus        81 FD~t~~Iw~k~~~efec--v~------------------------------------------~lEGHEnEVK~Vaws~s  116 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFEC--VA------------------------------------------TLEGHENEVKCVAWSAS  116 (312)
T ss_pred             ccceEEEeecCCCceeE--Ee------------------------------------------eeeccccceeEEEEcCC
Confidence            99999999877654321  22                                          4455555    789999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      |.+| | +++.|.+|-||.+..+.   +...++        .|...    +-.+. |+|.+.    +|+++++|.+|++|
T Consensus       117 G~~L-A-TCSRDKSVWiWe~deddEfec~aVL~--------~HtqD----VK~V~-WHPt~d----lL~S~SYDnTIk~~  177 (312)
T KOG0645|consen  117 GNYL-A-TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQD----VKHVI-WHPTED----LLFSCSYDNTIKVY  177 (312)
T ss_pred             CCEE-E-EeeCCCeEEEEEecCCCcEEEEeeec--------ccccc----ccEEE-EcCCcc----eeEEeccCCeEEEE
Confidence            9754 3 67889999999987543   566676        67553    44454 999754    99999999999999


Q ss_pred             EcCC--CCcceeeeeccCCCeeEEEeecCCCce
Q 024245          237 DIRN--PGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       237 d~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +-..  .-++.+++.+|...|++++|+++|..|
T Consensus       178 ~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  178 RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             eecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence            8763  246899999999999999999999654

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.1e-27  Score=189.25  Aligned_cols=192  Identities=18%  Similarity=0.286  Sum_probs=142.2

Q ss_pred             cccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCC-CEEEEE
Q 024245           12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQ   82 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~   82 (270)
                      ..+.||.+.|++++|+| ++.+|++|+.|++|++||+.++       +++..+.+|.  ..|.+++|+|  ++ ++|+++
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--~~V~~l~f~P--~~~~iLaSg  144 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--KKVGIVSFHP--SAMNVLASA  144 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC--CcEEEEEeCc--CCCCEEEEE
Confidence            34789999999999999 8889999999999999999764       3566788887  6699999999  64 689999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCe
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  162 (270)
                      +.|++|++||+++++...    .+..+......                                      ++|+|+|..
T Consensus       145 s~DgtVrIWDl~tg~~~~----~l~~h~~~V~s--------------------------------------la~spdG~l  182 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVE----VIKCHSDQITS--------------------------------------LEWNLDGSL  182 (493)
T ss_pred             eCCCEEEEEECCCCeEEE----EEcCCCCceEE--------------------------------------EEEECCCCE
Confidence            999999999998875322    22222211111                                      568999974


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE-e---cCCCcEEEEEc
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-G---YEDGSILVWDI  238 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-~---~~dg~i~vwd~  238 (270)
                      ++  +++.|+.|+|||+++++.+.++.        +|...   ....+. |.|+   +. .+++ |   +.|+.|++||+
T Consensus       183 La--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~---~~~~~~-w~~~---~~-~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        183 LC--TTSKDKKLNIIDPRDGTIVSSVE--------AHASA---KSQRCL-WAKR---KD-LIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             EE--EecCCCEEEEEECCCCcEEEEEe--------cCCCC---cceEEE-EcCC---CC-eEEEEecCCCCCCeEEEEeC
Confidence            43  67789999999999999988887        67432   222344 8874   23 4544 4   35899999999


Q ss_pred             CCCCcceeeeeccC-CCeeEEEeecCCCce
Q 024245          239 RNPGIPLTAMKVHL-EPGLECSMWRNPITM  267 (270)
Q Consensus       239 ~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l  267 (270)
                      ++...++.....+. ..+....|++++.+|
T Consensus       245 r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L  274 (493)
T PTZ00421        245 RKMASPYSTVDLDQSSALFIPFFDEDTNLL  274 (493)
T ss_pred             CCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence            98666666555433 455566788888764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-27  Score=175.76  Aligned_cols=239  Identities=16%  Similarity=0.293  Sum_probs=183.1

Q ss_pred             CCcccccccccccEEEEEEeCCCC---EEEEecCCCcEEEEeCCCCce----eEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      .+...++.||.++|.+++|.-...   .+++++.|.++++|.++.++.    ++...+|.  .+|.++...+  ++..++
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~--sgtr~~  209 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--RSVDSVSVDS--SGTRFC  209 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--cceeEEEecC--CCCeEE
Confidence            357788999999999888865333   699999999999999987653    33345777  7799999999  999999


Q ss_pred             EEeCCCcEEEEEccCC---------------------ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEec
Q 024245           81 SQGRDGTVKCWDIENG---------------------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE  139 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (270)
                      +|+.|.+|.+|+..+.                     ...+.|+..+.++......+.+..............+..||+.
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence            9999999999993221                     0112556666777766665555553333444445667789999


Q ss_pred             cCceeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245          140 VGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (270)
Q Consensus       140 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (270)
                      .+...........-  +..+|... ++ ++|+.|..|++||.+++.   ..++|.        ||.+    .+.++. |+
T Consensus       290 tg~~~~~~~~~ksl~~i~~~~~~~-Ll-~~gssdr~irl~DPR~~~gs~v~~s~~--------gH~n----wVssvk-ws  354 (423)
T KOG0313|consen  290 TGGLKSTLTTNKSLNCISYSPLSK-LL-ASGSSDRHIRLWDPRTGDGSVVSQSLI--------GHKN----WVSSVK-WS  354 (423)
T ss_pred             cccceeeeecCcceeEeecccccc-ee-eecCCCCceeecCCCCCCCceeEEeee--------cchh----hhhhee-cC
Confidence            98877755554444  77778654 44 478889999999999875   445566        7843    788887 99


Q ss_pred             CCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          215 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       215 p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |.  +. +.|++|+.|+++++||+|+...++..+.+|.+.|.++.|+..+..+|
T Consensus       355 p~--~~-~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvS  405 (423)
T KOG0313|consen  355 PT--NE-FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVS  405 (423)
T ss_pred             CC--Cc-eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEe
Confidence            96  33 49999999999999999996669999999999999999998877665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-28  Score=189.84  Aligned_cols=195  Identities=19%  Similarity=0.325  Sum_probs=158.5

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .+.++.+..|.+-|+|++.+|...+++++|.|-.|++||.+.. .+.++|.+|.  ..|.+++|+|. |.+.++|++.|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~--HyVMqv~fnPk-D~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE--HYVMQVAFNPK-DPNTFASASLDR  163 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc--eEEEEEEecCC-Cccceeeeeccc
Confidence            3578899999999999999999999999999999999999865 7889999999  55999999996 568999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      +|++|.+.+.    .|.++++++.....++.                                      +-+.|..-.++
T Consensus       164 TVKVWslgs~----~~nfTl~gHekGVN~Vd--------------------------------------yy~~gdkpylI  201 (794)
T KOG0276|consen  164 TVKVWSLGSP----HPNFTLEGHEKGVNCVD--------------------------------------YYTGGDKPYLI  201 (794)
T ss_pred             cEEEEEcCCC----CCceeeeccccCcceEE--------------------------------------eccCCCcceEE
Confidence            9999999877    45677877766655444                                      32333222233


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +|++|.+|+|||..+..|+++++        ||..    .+..+. |+|.-+    .+++|++||+++||...+ -+...
T Consensus       202 sgaDD~tiKvWDyQtk~CV~TLe--------GHt~----Nvs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~lE~  263 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSCVQTLE--------GHTN----NVSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKLEK  263 (794)
T ss_pred             ecCCCceEEEeecchHHHHHHhh--------cccc----cceEEE-ecCCCc----EEEEecCCccEEEecCcc-eehhh
Confidence            89999999999999999999999        8855    455565 999765    999999999999999888 66666


Q ss_pred             eeeccCCCeeEEEeecCCC
Q 024245          247 AMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~  265 (270)
                      ++.---+.|++++-.+.+.
T Consensus       264 tLn~gleRvW~I~~~k~~~  282 (794)
T KOG0276|consen  264 TLNYGLERVWCIAAHKGDG  282 (794)
T ss_pred             hhhcCCceEEEEeecCCCC
Confidence            6665556777777666443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.7e-28  Score=193.57  Aligned_cols=232  Identities=14%  Similarity=0.222  Sum_probs=186.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++..|.+|.++|+.++|+|++.+++||+.|-.|+||+.++.+++.++.+|.  +.|..+.|++  .--+++|+|.|.+|
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTI  117 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTI  117 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeE
Confidence            3677889999999999999999999999999999999999999999999999  7799999999  77899999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccC--------------------------
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVG--------------------------  141 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------  141 (270)
                      +||+..+++++.    .+.++....++..+.+..+... ..-...+++||+..-                          
T Consensus       118 rIWNwqsr~~ia----vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~  193 (1202)
T KOG0292|consen  118 RIWNWQSRKCIA----VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ  193 (1202)
T ss_pred             EEEeccCCceEE----EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence            999999997754    7777777776666655433332 233455677876421                          


Q ss_pred             --ceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeec
Q 024245          142 --ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAY  213 (270)
Q Consensus       142 --~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  213 (270)
                        ..++..++||..    ++|+|.-+  ++++|++|..|++|.+...+  .+.+..        ||.+    .+.++. |
T Consensus       194 ~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmnetKaWEvDtcr--------gH~n----nVssvl-f  258 (1202)
T KOG0292|consen  194 TDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKAWEVDTCR--------GHYN----NVSSVL-F  258 (1202)
T ss_pred             cCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEeccccceeehhhh--------cccC----CcceEE-e
Confidence              134456678877    88999886  33489999999999997655  344445        7754    566666 9


Q ss_pred             CCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +|...    ++++.++|++|+|||+.. ...++++....+..+.++-+|...++.
T Consensus       259 hp~q~----lIlSnsEDksirVwDm~k-Rt~v~tfrrendRFW~laahP~lNLfA  308 (1202)
T KOG0292|consen  259 HPHQD----LILSNSEDKSIRVWDMTK-RTSVQTFRRENDRFWILAAHPELNLFA  308 (1202)
T ss_pred             cCccc----eeEecCCCccEEEEeccc-ccceeeeeccCCeEEEEEecCCcceee
Confidence            99633    999999999999999998 889999987788899999999877654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.1e-27  Score=189.65  Aligned_cols=231  Identities=21%  Similarity=0.309  Sum_probs=177.8

Q ss_pred             ccccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           11 VAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        11 ~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.+.+| ...|.++.|+++|+++++++.|+.+++|+....+  ..+.+.+|.  ..|..++|+|  ++.++++++.|++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~t  226 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDKT  226 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCce
Confidence            5555554 7899999999999999999999999999997777  677777787  6699999999  9999999999999


Q ss_pred             EEEEEccC-CccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           88 VKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        88 i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      |++||++. +..    +..+.++......+.+.... ........+.+.+|++++++... .+.+|..    ++|++++.
T Consensus       227 iriwd~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  227 LRIWDLKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-KLKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             EEEeeccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-eeeccCCceEEEEECCCCC
Confidence            99999943 344    33666666655444433333 33445556778889999955444 6677766    88999998


Q ss_pred             eEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      .++  +++.|+.|+|||+.++.  ++..+.        ++... . .+..++ |+|+   +. +|+++..|+.+++||++
T Consensus       302 ~l~--s~s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  302 LLV--SASYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLR  364 (456)
T ss_pred             EEE--EcCCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEcc
Confidence            665  45779999999999999  556666        45332 2 677887 9995   55 99999999999999999


Q ss_pred             CCCcceeeeeccCCC---eeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVHLEP---GLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~---v~~~~~s~~g~~ls  268 (270)
                      . +..+..+.+|...   +.+...++.|.+|.
T Consensus       365 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  365 S-GKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             C-CcceeeecccCCcceeEecccccCCCCeEE
Confidence            9 8888888888764   33445566666653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=5.2e-27  Score=186.25  Aligned_cols=232  Identities=18%  Similarity=0.252  Sum_probs=184.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCC-CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+++.+.--...|..++|+..|.+||.|+.. |.+.||++.+..-+-..++|.  ..+.+++++|  ||+++++|++||.
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSp--Dgq~iaTG~eDgK  373 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSP--DGQLIATGAEDGK  373 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECC--CCcEEEeccCCCc
Confidence            4667777667899999999999999998765 899999999888888888888  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~  162 (270)
                      |+|||..++-|    +.++..+......+.+....... ...-.+.++.||+...+..+........    ++..|.|..
T Consensus       374 VKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  374 VKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             EEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence            99999999866    44777777766666665544443 3344677888999888776643322222    666677874


Q ss_pred             EEEEecCCC-ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          163 YMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       163 ~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      +.  +|+.| -.|++|++.+|+.+..+.        ||.    +.+.+++ |+|.   +. .|++|+.|.+|++||+-..
T Consensus       450 V~--AG~~d~F~IfvWS~qTGqllDiLs--------GHE----gPVs~l~-f~~~---~~-~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  450 VC--AGAQDSFEIFVWSVQTGQLLDILS--------GHE----GPVSGLS-FSPD---GS-LLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             EE--eeccceEEEEEEEeecCeeeehhc--------CCC----CcceeeE-Eccc---cC-eEEeccccceEEEEEeecc
Confidence            43  35544 479999999999999999        884    4677777 9995   44 9999999999999999875


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ...+.++. +...++.++|+|||+.|.
T Consensus       511 ~~~vEtl~-i~sdvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  511 SGTVETLE-IRSDVLAVSFRPDGKELA  536 (893)
T ss_pred             CceeeeEe-eccceeEEEEcCCCCeEE
Confidence            55677776 567899999999998874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=5.1e-28  Score=179.53  Aligned_cols=234  Identities=17%  Similarity=0.239  Sum_probs=177.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +.+.+|.|-.++|+.+.|.+++.++++++.|+.+++|++.+.+...++.+|.  +.|+++.|..  ....+++|+.|.+|
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt--dkVt~ak~~~--~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT--DKVTAAKFKL--SHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc--cceeeehhhc--cccceeeccccchh
Confidence            4678888889999999999999999999999999999999999999999999  5599999988  64569999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~  166 (270)
                      ++||+....+.+.++..-........      .......-....+++||++..........+..-  +..++++..++. 
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs-  358 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCS------ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS-  358 (459)
T ss_pred             hhhhhhhhheeccccccccccceEec------ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEee-
Confidence            99999998776643332222221111      111111222344788998887766543333222  889999987774 


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                       ++.|.++.+.|+++.+....+.-.      +..  -....+.+. |+|+   +. |+++|+.||.|+||++.+ +++..
T Consensus       359 -ssRDdtl~viDlRt~eI~~~~sA~------g~k--~asDwtrvv-fSpd---~~-YvaAGS~dgsv~iW~v~t-gKlE~  423 (459)
T KOG0288|consen  359 -SSRDDTLKVIDLRTKEIRQTFSAE------GFK--CASDWTRVV-FSPD---GS-YVAAGSADGSVYIWSVFT-GKLEK  423 (459)
T ss_pred             -ecCCCceeeeecccccEEEEeecc------ccc--cccccceeE-ECCC---Cc-eeeeccCCCcEEEEEccC-ceEEE
Confidence             467999999999999988877621      111  112355666 9995   44 999999999999999999 88888


Q ss_pred             eeeccCC--CeeEEEeecCCCcee
Q 024245          247 AMKVHLE--PGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~--~v~~~~~s~~g~~ls  268 (270)
                      .+.....  .|++++|+|.|..|-
T Consensus       424 ~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  424 VLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             EeccCCCCcceEEEEEcCCCchhh
Confidence            8876554  499999999998763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=178.17  Aligned_cols=225  Identities=21%  Similarity=0.312  Sum_probs=178.7

Q ss_pred             cccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++...+..|.  +.|..|++..    +.++++++|++|
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--G~V~Gi~v~~----~~~~tvgdDKtv  131 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE--GLVRGICVTQ----TSFFTVGDDKTV  131 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc--CceeeEEecc----cceEEecCCcce
Confidence            567889999999999999976 689999999999999999999999999998  6699999976    689999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYM  164 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~  164 (270)
                      +.|.++..     |..++.+.....   .++- .....+...|..+.+||......+.....+...   +.|+|....+|
T Consensus       132 K~wk~~~~-----p~~tilg~s~~~---gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  132 KQWKIDGP-----PLHTILGKSVYL---GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             eeeeccCC-----cceeeecccccc---ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            99998752     222332222111   1111 122344556667889998877776665555554   88999998888


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ++++ .|++|.|||++++.+++.+..             ..-...++ |+|.   +. .+++|++|..++.+|++....+
T Consensus       204 as~~-sDrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  204 ASCA-SDRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             eeec-cCCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhccc
Confidence            7554 589999999999999888773             22334555 9992   33 7999999999999999998999


Q ss_pred             eeeeeccCCCeeEEEeecCCCce
Q 024245          245 LTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +....+|.++|.++.|||.|+.+
T Consensus       265 ~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             chhhcccceeEEEeccCCCcchh
Confidence            99999999999999999999765

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.6e-26  Score=185.76  Aligned_cols=198  Identities=20%  Similarity=0.237  Sum_probs=139.2

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc--------eeEEEeecCCCcceEEEEEeeCCCCCE-
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK-   78 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-   78 (270)
                      .++..+.+|.+.|.+++|+|+ +.+||+|+.|+.|+|||+.++.        ++..+.+|.  ..|.+++|+|  ++.. 
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P--~g~~i  140 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNP--MNYYI  140 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECC--CCCeE
Confidence            357789999999999999996 7899999999999999997542        334567787  6699999999  7665 


Q ss_pred             EEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC
Q 024245           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (270)
Q Consensus        79 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  158 (270)
                      |++++.|++|++||+++++...    .+... ....  +                                    ++|+|
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~-~~V~--S------------------------------------lswsp  177 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAF----QINMP-KKLS--S------------------------------------LKWNI  177 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEE----EEecC-CcEE--E------------------------------------EEECC
Confidence            5789999999999999875321    22111 1100  0                                    56999


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----cEE
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SIL  234 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg----~i~  234 (270)
                      +|..+ + +++.|+.|+|||+++++.+.++.        +|.......+..+..|+++   +. +|++++.|+    .|+
T Consensus       178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK  243 (568)
T ss_pred             CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence            99854 3 45578999999999999998888        7865433332222226664   44 777777664    799


Q ss_pred             EEEcCCCCcceeeeeccC--CCeeEEEeecCCCce
Q 024245          235 VWDIRNPGIPLTAMKVHL--EPGLECSMWRNPITM  267 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l  267 (270)
                      |||+++..+++..+..+.  +.+......++|.++
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            999997567776654322  333333333445544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.9e-28  Score=167.67  Aligned_cols=211  Identities=17%  Similarity=0.242  Sum_probs=166.5

Q ss_pred             CCCCCCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         4 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      .+.|..|++.++.|+..|.++.|++ +++.++++|.|++|++|+....+.+.++.+|.  ..|+..+|+|. .+++++++
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~  166 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASA  166 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEc
Confidence            3556689999999999999999999 66678888999999999999999999999998  77999999997 56999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      |.|+++++||++......    .++.+..  ..|.++-............+.++.||++.-+.....+.+|.-    +.|
T Consensus       167 Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~  242 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF  242 (311)
T ss_pred             cCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence            999999999998764322    2444442  223333333333444555667788999999988888889888    999


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      ||....+++ +++.|-+++|||...+. .+.+..        .|    ...+..+. |++-  ++. ++|+++-|+.++|
T Consensus       243 Sph~~~lLa-SasYDmT~riw~~~~~ds~~e~~~--------~H----tEFv~g~D-ws~~--~~~-~vAs~gWDe~l~V  305 (311)
T KOG0277|consen  243 SPHHASLLA-SASYDMTVRIWDPERQDSAIETVD--------HH----TEFVCGLD-WSLF--DPG-QVASTGWDELLYV  305 (311)
T ss_pred             CcchhhHhh-hccccceEEecccccchhhhhhhh--------cc----ceEEeccc-cccc--cCc-eeeecccccceee
Confidence            999988776 78899999999998555 444444        34    44677777 8876  333 8999999999999


Q ss_pred             EEc
Q 024245          236 WDI  238 (270)
Q Consensus       236 wd~  238 (270)
                      |+-
T Consensus       306 w~p  308 (311)
T KOG0277|consen  306 WNP  308 (311)
T ss_pred             ecc
Confidence            984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=5.8e-27  Score=185.38  Aligned_cols=230  Identities=14%  Similarity=0.221  Sum_probs=177.6

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc----eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      +.+.||++.|.+++...+|-+|+||+.|.++++|.++++.    ++....+|.  ..|.+++++.- ...+|+++|.|++
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~--~svgava~~~~-~asffvsvS~D~t  435 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT--NSVGAVAGSKL-GASFFVSVSQDCT  435 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc--cccceeeeccc-CccEEEEecCCce
Confidence            3788999999999966778899999999999999885543    445567788  56999999762 3468999999999


Q ss_pred             EEEEEccCCccCCC-Ccc----ceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC----eE
Q 024245           88 VKCWDIENGGLSSN-PSL----TIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        88 i~~wd~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                      +++|++...+.... +.+    ....|...+.++++..  ....+++++   ...+|+++ .-.+...+.||..    +.
T Consensus       436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~--ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~  512 (775)
T KOG0319|consen  436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP--NDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVS  512 (775)
T ss_pred             EEEecCCCcccccccceehhhHHHHhhcccccceEecC--CCceEEecccccceeeeccc-CceEEEEeeCCccceEEEE
Confidence            99999987332221 122    2233444444444443  333444444   44568888 4456668899988    99


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |+|..+ +++ ++|.|++|+||.+.+..++++|.        ||.    ..+..+. |-.+   |. .|++++.||.|++
T Consensus       513 Fs~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH~----~aVlra~-F~~~---~~-qliS~~adGliKl  573 (775)
T KOG0319|consen  513 FSKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GHT----SAVLRAS-FIRN---GK-QLISAGADGLIKL  573 (775)
T ss_pred             eccccc-eeE-eccCCceEEEEEeccceeeeeec--------Ccc----ceeEeee-eeeC---Cc-EEEeccCCCcEEE
Confidence            999986 444 66679999999999999999999        884    4677777 8864   44 8999999999999


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      |++++ ..|+.++.+|.+.|++++-+|++..+
T Consensus       574 Wnikt-~eC~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  574 WNIKT-NECEMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             Eeccc-hhhhhhhhhccceeEEEeecCcccee
Confidence            99999 99999999999999999999987644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.4e-25  Score=171.26  Aligned_cols=230  Identities=23%  Similarity=0.380  Sum_probs=177.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +....+.+|...+..+.|+|+++++++++.||.|++||+.+++.+..+..+.  ..|.++.|++  +++++++++.|+.|
T Consensus        42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~~~~i  117 (289)
T cd00200          42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSP--DGRILSSSSRDKTI  117 (289)
T ss_pred             CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcC--CCCEEEEecCCCeE
Confidence            3556778899999999999999999999999999999999888888888777  5699999999  87888888889999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      .+||+++++...    .+..+......+.+........... .+...+|++...+.... +..|..    ++|+|+++.+
T Consensus       118 ~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l  192 (289)
T cd00200         118 KVWDVETGKCLT----TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKL  192 (289)
T ss_pred             EEEECCCcEEEE----EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEE
Confidence            999998765432    3333443344444444333333333 66777888876654443 334442    8999999766


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      ++ ++ .|+.|++||++.++.+..+.        .|    ...+.++. |+|+   +. ++++++.||.|++||+.+ ++
T Consensus       193 ~~-~~-~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~  252 (289)
T cd00200         193 LS-SS-SDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GE  252 (289)
T ss_pred             EE-ec-CCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-ce
Confidence            64 33 48999999999988888775        34    33677777 9985   33 888888899999999998 78


Q ss_pred             ceeeeeccCCCeeEEEeecCCCce
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +...+..|...|.+++|+|++.+|
T Consensus       253 ~~~~~~~~~~~i~~~~~~~~~~~l  276 (289)
T cd00200         253 CVQTLSGHTNSVTSLAWSPDGKRL  276 (289)
T ss_pred             eEEEccccCCcEEEEEECCCCCEE
Confidence            888888999999999999997665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.1e-26  Score=173.16  Aligned_cols=227  Identities=12%  Similarity=0.150  Sum_probs=175.4

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      ++|...|.+++.++||+|||+|+.|..|.||+..+.+.++.+.+|.  +.|.+++|-.  ..+.|++++.|++|++|++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRK--GTSELYSASADRSVKVWSID  274 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc--cceeeeeeec--CccceeeeecCCceEEEehh
Confidence            4899999999999999999999999999999999999999999999  6699999988  77899999999999999998


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~  169 (270)
                      ....+.    ++.+++..+..++........... ......+|++...  .+..+.++..    ++|-.+.. ++  +|+
T Consensus       275 ~~s~ve----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~H-fv--sGS  345 (479)
T KOG0299|consen  275 QLSYVE----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEH-FV--SGS  345 (479)
T ss_pred             HhHHHH----HHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccc-ee--ecc
Confidence            776543    666776666655544433333322 4456677888333  3334555553    66666553 43  799


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC-------ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-------GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~-------~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++|.|.+|++.+.+++.+...       +|.....       .++++++ ..|...    ++++|+.+|.|++|-+..+.
T Consensus       346 dnG~IaLWs~~KKkplf~~~~-------AHgv~~~~~~~~~~~Witsla-~i~~sd----L~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRL-------AHGVIPELDPVNGNFWITSLA-VIPGSD----LLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             CCceEEEeeecccCceeEeec-------cccccCCccccccccceeeeE-ecccCc----eEEecCCCCceEEEEecCCc
Confidence            999999999999999888775       4432211       2788887 777533    99999999999999999853


Q ss_pred             ---cceeeeeccCCCeeEEEeecCCCce
Q 024245          243 ---IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 ---~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                         .++..+. -.+.|++++|+++|+.|
T Consensus       414 r~i~~l~~ls-~~GfVNsl~f~~sgk~i  440 (479)
T KOG0299|consen  414 RAINLLYSLS-LVGFVNSLAFSNSGKRI  440 (479)
T ss_pred             cccceeeecc-cccEEEEEEEccCCCEE
Confidence               4555555 46889999999999854

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.5e-28  Score=176.72  Aligned_cols=211  Identities=17%  Similarity=0.259  Sum_probs=160.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ...|.|+.+.  ...+++|..|++|+|||.++..+.+.+.+|.  +.|.|+.|..    ..+++|+.|.+|++||+++++
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHt--GSVLCLqyd~----rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHT--GSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCC--CcEEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence            4679999984  5589999999999999999999999999999  6699999966    799999999999999999997


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc--eeeeccCCCCC--eEecCCCCeEEEEecCCCce
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~  173 (270)
                      .+.    ++-.+......+.+.. .......-.-....|++....  .....+.||..  -...-+.++++  +++.|.+
T Consensus       269 ~l~----tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV--sASgDRT  341 (499)
T KOG0281|consen  269 PLN----TLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRT  341 (499)
T ss_pred             hhh----HHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE--EecCCce
Confidence            654    4433333332222221 111222233455678876554  44567788887  22333445444  5666999


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  253 (270)
                      |++|++.++++++++.        ||.-    .+.+++ +     .|+ ++++|++|.+|++||+.. +.++..++||..
T Consensus       342 ikvW~~st~efvRtl~--------gHkR----GIAClQ-Y-----r~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEe  401 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLN--------GHKR----GIACLQ-Y-----RDR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEE  401 (499)
T ss_pred             EEEEeccceeeehhhh--------cccc----cceehh-c-----cCe-EEEecCCCceEEEEeccc-cHHHHHHhchHH
Confidence            9999999999999999        7833    344555 5     355 999999999999999999 999999999999


Q ss_pred             CeeEEEeecC
Q 024245          254 PGLECSMWRN  263 (270)
Q Consensus       254 ~v~~~~~s~~  263 (270)
                      -|.++.|...
T Consensus       402 LvRciRFd~k  411 (499)
T KOG0281|consen  402 LVRCIRFDNK  411 (499)
T ss_pred             hhhheeecCc
Confidence            9999999753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=167.26  Aligned_cols=237  Identities=16%  Similarity=0.207  Sum_probs=190.1

Q ss_pred             CCCCCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      |.+..-....+.+|.||+++|+....+.+....|+++.|-+-+|||.-+|..+..|. |.  .-|.+++|+.  |.++|+
T Consensus        42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hk--hivk~~af~~--ds~~ll  116 (334)
T KOG0278|consen   42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HK--HIVKAVAFSQ--DSNYLL  116 (334)
T ss_pred             hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hh--heeeeEEecc--cchhhh
Confidence            334444456789999999999999999999999999999999999999999988886 55  4599999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC--eEec
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVP  157 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s  157 (270)
                      +|+.++.+++||++..+   .|...+.+++..+...-++.... .........+++||.+++..+......+..  +.++
T Consensus       117 tgg~ekllrvfdln~p~---App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs  193 (334)
T KOG0278|consen  117 TGGQEKLLRVFDLNRPK---APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS  193 (334)
T ss_pred             ccchHHHhhhhhccCCC---CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence            99999999999998765   44556667766665544443333 333466778899999999887765544443  9999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ++|+++.++   +.+.|.+||..+-.+++.++.             ...+.+.. .+|..   . .+++|++|..++.||
T Consensus       194 ~dG~ilTia---~gssV~Fwdaksf~~lKs~k~-------------P~nV~SAS-L~P~k---~-~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  194 QDGRILTIA---YGSSVKFWDAKSFGLLKSYKM-------------PCNVESAS-LHPKK---E-FFVAGGEDFKVYKFD  252 (334)
T ss_pred             cCCCEEEEe---cCceeEEeccccccceeeccC-------------cccccccc-ccCCC---c-eEEecCcceEEEEEe
Confidence            999866543   347899999999998888884             33455665 88863   2 899999999999999


Q ss_pred             cCCCCcceeee-eccCCCeeEEEeecCCCce
Q 024245          238 IRNPGIPLTAM-KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       238 ~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..+ ++.+..+ ++|-++|.++.|+|||..-
T Consensus       253 y~T-geEi~~~nkgh~gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  253 YNT-GEEIGSYNKGHFGPVHCVRFSPDGELY  282 (334)
T ss_pred             ccC-CceeeecccCCCCceEEEEECCCCcee
Confidence            999 7777775 8999999999999999753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=9.3e-28  Score=181.40  Aligned_cols=203  Identities=20%  Similarity=0.358  Sum_probs=150.1

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~   86 (270)
                      .++++++.||..+|.+++|+.+|..++|++.|+.|++||+++|+++..+...   ..+.++.|.|  ++ +.+++|+.|+
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd~  322 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSDK  322 (503)
T ss_pred             cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCCC
Confidence            4789999999999999999999999999999999999999999999998765   5589999999  65 7889999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccC-CccceecCCCCceEEEecc-------------------------
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREV-------------------------  140 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------  140 (270)
                      .|+.||+++++.++    ....+-.....+.+... .........+...+|+...                         
T Consensus       323 ki~~wDiRs~kvvq----eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQ----EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             cEEEEeccchHHHH----HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC
Confidence            99999999997654    11111111111111110 1111111122222222111                         


Q ss_pred             --------------------CceeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC
Q 024245          141 --------------------GETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       141 --------------------~~~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                                          .......+.||..      +.|||||.+++  +|+.||.+.+||.++-+.+..++     
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lk-----  471 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLK-----  471 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccc-----
Confidence                                1122335566655      89999998664  79999999999999999999998     


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                         +|    ...|..+. |+|.++.   .+||++-||.|++||
T Consensus       472 ---ah----~~~ci~v~-wHP~e~S---kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  472 ---AH----DQPCIGVD-WHPVEPS---KVATCGWDGLIKIWD  503 (503)
T ss_pred             ---cC----CcceEEEE-ecCCCcc---eeEecccCceeEecC
Confidence               66    45788888 9997542   899999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.3e-27  Score=187.02  Aligned_cols=237  Identities=15%  Similarity=0.188  Sum_probs=171.5

Q ss_pred             ccccc-cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 024245           11 VAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------------------------------------   49 (270)
Q Consensus        11 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----------------------------------------   49 (270)
                      .+.+. +|.++|++|.||+||+|||+|+.||.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            35566 8999999999999999999999999999998754                                        


Q ss_pred             --------------------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           50 --------------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        50 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                                          .++++.|.+|.  +.|..|.|+.  + ++|++++.|++|++|++....+++    .+...
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~----~F~Hn  409 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK----VFSHN  409 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccc--hhheeccccc--C-CeeEeccccccEEeecCCCcceee----EEecC
Confidence                                01123456787  4599999998  7 899999999999999999887755    55433


Q ss_pred             cceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCC-C-eEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          110 SYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDS-K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                       ..+.++.+.+..+  .....-.+..++|.+...+.+.+.-...- . ++|+|||++.++  |+.+|.+++|+....+..
T Consensus       410 -dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  410 -DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             -CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEE
Confidence             3333344433333  23333356677899988887765322211 1 999999997764  888999999999977765


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC--CeeEEEeecC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE--PGLECSMWRN  263 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~v~~~~~s~~  263 (270)
                      ..+.-....   +. ......++.++ |.|..++   .+++.+.|..|+|+|+++ ..++..|+|+..  .-...+|+.|
T Consensus       487 ~~~~I~~~~---~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  487 SDFHIRLHN---KK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             EeeeEeecc---Cc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccC
Confidence            554411000   00 11122688888 8887554   577778899999999998 889999997653  3456889999


Q ss_pred             CCcee
Q 024245          264 PITMS  268 (270)
Q Consensus       264 g~~ls  268 (270)
                      |++|-
T Consensus       558 gk~IV  562 (712)
T KOG0283|consen  558 GKHIV  562 (712)
T ss_pred             CCEEE
Confidence            99874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.7e-26  Score=184.94  Aligned_cols=219  Identities=19%  Similarity=0.321  Sum_probs=176.1

Q ss_pred             Ccccc-cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ..+.. +.||.+.|++++|..-+.+|++|+.|.++++||..+|++...+.+|.  +.|.++...+    .++++|+.|.+
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~--stv~~~~~~~----~~~~sgs~D~t  312 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT--SSVRCLTIDP----FLLVSGSRDNT  312 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC--ceEEEEEccC----ceEeeccCCce
Confidence            34455 99999999999998878899999999999999999999999999998  6699998876    78999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC-CeEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG-PKYM  164 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~-~~~~  164 (270)
                      |++|++.++.++.    .+.++...+.++.... +........+.+.+|++.+++.+. .+.+|..  .++..++ ..++
T Consensus       313 VkVW~v~n~~~l~----l~~~h~~~V~~v~~~~-~~lvsgs~d~~v~VW~~~~~~cl~-sl~gH~~~V~sl~~~~~~~~~  386 (537)
T KOG0274|consen  313 VKVWDVTNGACLN----LLRGHTGPVNCVQLDE-PLLVSGSYDGTVKVWDPRTGKCLK-SLSGHTGRVYSLIVDSENRLL  386 (537)
T ss_pred             EEEEeccCcceEE----EeccccccEEEEEecC-CEEEEEecCceEEEEEhhhceeee-eecCCcceEEEEEecCcceEE
Confidence            9999999987654    5555666677676663 333334444488899999776665 6667888  4445555 4443


Q ss_pred             EEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          165 AVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                        +|+.|++|++||+++. +++.++.        +|..    .+..+. +.     ++ +|++++.|++|++||..+ ++
T Consensus       387 --Sgs~D~~IkvWdl~~~~~c~~tl~--------~h~~----~v~~l~-~~-----~~-~Lvs~~aD~~Ik~WD~~~-~~  444 (537)
T KOG0274|consen  387 --SGSLDTTIKVWDLRTKRKCIHTLQ--------GHTS----LVSSLL-LR-----DN-FLVSSSADGTIKLWDAEE-GE  444 (537)
T ss_pred             --eeeeccceEeecCCchhhhhhhhc--------CCcc----cccccc-cc-----cc-eeEeccccccEEEeeccc-Cc
Confidence              8999999999999999 8999998        6743    445544 33     22 999999999999999999 89


Q ss_pred             ceeeeec-cCCCeeEEEee
Q 024245          244 PLTAMKV-HLEPGLECSMW  261 (270)
Q Consensus       244 ~~~~~~~-~~~~v~~~~~s  261 (270)
                      +++++.+ |...|..+++.
T Consensus       445 ~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  445 CLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eeeeeccCCcccEEEeecC
Confidence            9999998 67888888876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.8e-27  Score=173.56  Aligned_cols=211  Identities=17%  Similarity=0.244  Sum_probs=152.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+++.||..+|..+.||||.++|++++.|..+.+||+.+|.+...+... ....+.+.+|.|  ||..+++|+.|+++
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI  336 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence            568899999999999999999999999999999999999999998877644 226699999999  99999999999999


Q ss_pred             EEEEccCCccCC-----CC-cccee----c---------------------------ccceEEEEeeccCCcc-ceecCC
Q 024245           89 KCWDIENGGLSS-----NP-SLTIK----T---------------------------NSYHFCKLSLVKEPYA-NAKQAN  130 (270)
Q Consensus        89 ~~wd~~~~~~~~-----~~-~~~~~----~---------------------------~~~~~~~~~~~~~~~~-~~~~~~  130 (270)
                      ..||++......     .| +..+.    +                           ....+..+++...... ......
T Consensus       337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence            999987543211     00 00000    0                           0001111222211111 112223


Q ss_pred             CCceEEEeccCceeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC
Q 024245          131 EPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR  204 (270)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~  204 (270)
                      .....||++....++ .+.||..      -||.-....++ ++|++|+.|+||+..+++++.++.        ||.    
T Consensus       417 qei~LWDl~e~~lv~-kY~Ghkq~~fiIrSCFgg~~~~fi-aSGSED~kvyIWhr~sgkll~~Ls--------GHs----  482 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVR-KYFGHKQGHFIIRSCFGGGNDKFI-ASGSEDSKVYIWHRISGKLLAVLS--------GHS----  482 (519)
T ss_pred             CeeEEeecchhhHHH-HhhcccccceEEEeccCCCCcceE-EecCCCceEEEEEccCCceeEeec--------CCc----
Confidence            445667877444433 5556655      45554444455 489999999999999999999999        884    


Q ss_pred             ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ..|.+++ |+|.  +-. ++|+++.||+|+||-...
T Consensus       483 ~~vNcVs-wNP~--~p~-m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  483 KTVNCVS-WNPA--DPE-MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceeeEEe-cCCC--CHH-HhhccCCCCeEEEecCCc
Confidence            5788888 9997  334 999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=2.5e-25  Score=191.57  Aligned_cols=226  Identities=14%  Similarity=0.214  Sum_probs=163.8

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----c----eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      +..|.+.|++++|+|+|++||+|+.|+.|+|||+...    .    +...+..+   ..|.+++|++. .+.+|++++.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~-~~~~las~~~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---SKLSGICWNSY-IKSQVASSNFE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---CceeeEEeccC-CCCEEEEEeCC
Confidence            4458999999999999999999999999999997542    1    12223322   56999999874 46889999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCCC---eEecC-C
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPA-E  159 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~-~  159 (270)
                      |+|++||+.+++...    .+..+...+..+.+...  .........+.+.+|++..+..+... ..+..   +.|++ +
T Consensus       555 g~v~lWd~~~~~~~~----~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~  629 (793)
T PLN00181        555 GVVQVWDVARSQLVT----EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSES  629 (793)
T ss_pred             CeEEEEECCCCeEEE----EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCC
Confidence            999999999876433    45555555544444321  12233344567788999877655433 23333   67754 5


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      +. +++ +|+.|+.|++||+++.+ .+..+.        +|.    ..+.++. |.+    +. +|++++.|++|++||+
T Consensus       630 g~-~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h~----~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        630 GR-SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GHS----KTVSYVR-FVD----SS-TLVSSSTDNTLKLWDL  689 (793)
T ss_pred             CC-EEE-EEeCCCeEEEEECCCCCccceEec--------CCC----CCEEEEE-EeC----CC-EEEEEECCCEEEEEeC
Confidence            55 444 57789999999998765 455666        663    3567777 863    33 8999999999999999


Q ss_pred             CCC-----CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          239 RNP-----GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       239 ~~~-----~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..     ..++..+.+|...++.++|+|++.+|.
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la  724 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA  724 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence            852     357888999999999999999988764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.6e-26  Score=159.91  Aligned_cols=186  Identities=17%  Similarity=0.265  Sum_probs=146.5

Q ss_pred             ccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           17 HRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        17 h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      -++.+..++|+++ ...+++++.||++++||+.. ..+++.++.|..+  |.++.|++. .+..++++|.|++|++|+..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence            3578999999994 45888999999999999643 4688889999844  999999996 44677888999999999998


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      ..+.+.    ++.++...+-  .                                    ..|+|....+++ +.+.|+++
T Consensus       136 r~~Sv~----Tf~gh~~~Iy--~------------------------------------a~~sp~~~nlfa-s~Sgd~~l  172 (311)
T KOG0277|consen  136 RPNSVQ----TFNGHNSCIY--Q------------------------------------AAFSPHIPNLFA-SASGDGTL  172 (311)
T ss_pred             CCcceE----eecCCccEEE--E------------------------------------EecCCCCCCeEE-EccCCceE
Confidence            765433    4444332221  1                                    458888888887 45569999


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                      ++||++.......++        .|.    ..+.++. |+..  +.. .|+||+.|+.|+.||+++...++..+.+|.-+
T Consensus       173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky--~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY--NHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             EEEEecCCCceeEEE--------ecc----ceeEeec-cccc--CCc-EEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999998765444576        663    3567776 8864  333 99999999999999999988999999999999


Q ss_pred             eeEEEeecCC
Q 024245          255 GLECSMWRNP  264 (270)
Q Consensus       255 v~~~~~s~~g  264 (270)
                      |..+.|||..
T Consensus       237 VRkvk~Sph~  246 (311)
T KOG0277|consen  237 VRKVKFSPHH  246 (311)
T ss_pred             EEEEecCcch
Confidence            9999999954

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-27  Score=172.53  Aligned_cols=182  Identities=15%  Similarity=0.279  Sum_probs=148.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe--------ecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--------VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      |.++.+.|..|+|||.+|++|+.||-|.+||..+|+..+.++        .+.  ++|.|+.|+.  |...|++|+.||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHhhccCcCCc
Confidence            456789999999999999999999999999999887665443        344  6799999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCcccee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      |++|.+++|.+++    .+. .+....++                                      +.||.|+..++  
T Consensus       287 IKvWri~tG~ClR----rFdrAHtkGvt~--------------------------------------l~FSrD~SqiL--  322 (508)
T KOG0275|consen  287 IKVWRIETGQCLR----RFDRAHTKGVTC--------------------------------------LSFSRDNSQIL--  322 (508)
T ss_pred             EEEEEEecchHHH----HhhhhhccCeeE--------------------------------------EEEccCcchhh--
Confidence            9999999998866    333 33333333                                      34888888776  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +++.|.+++|..+.+|++++.+.        ||..    .+.... |.++   |. .+++++.||+|++|+.++ .+++.
T Consensus       323 S~sfD~tvRiHGlKSGK~LKEfr--------GHsS----yvn~a~-ft~d---G~-~iisaSsDgtvkvW~~Kt-teC~~  384 (508)
T KOG0275|consen  323 SASFDQTVRIHGLKSGKCLKEFR--------GHSS----YVNEAT-FTDD---GH-HIISASSDGTVKVWHGKT-TECLS  384 (508)
T ss_pred             cccccceEEEeccccchhHHHhc--------Cccc----cccceE-EcCC---CC-eEEEecCCccEEEecCcc-hhhhh
Confidence            67889999999999999999999        8844    666666 9984   55 999999999999999999 88888


Q ss_pred             eeecc--CCCeeEEEeecC
Q 024245          247 AMKVH--LEPGLECSMWRN  263 (270)
Q Consensus       247 ~~~~~--~~~v~~~~~s~~  263 (270)
                      +++..  ..+|+++-.-|.
T Consensus       385 Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  385 TFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             hccCCCCcccceeEEEcCC
Confidence            88743  346777666553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=9.2e-26  Score=166.03  Aligned_cols=200  Identities=20%  Similarity=0.331  Sum_probs=155.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-------------------------CceeEEEeecCCCcc
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------------------------HRTVSSSWVHSAAHG   64 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~~~   64 (270)
                      .++..+||+..|.+++..++|..+++|+.|.+|.||+...                         +.++-.+.+|.  ++
T Consensus       185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt--~~  262 (423)
T KOG0313|consen  185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT--EP  262 (423)
T ss_pred             HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc--cc
Confidence            3455569999999999999999999999999999999321                         23455678888  77


Q ss_pred             eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC---CCceEEEeccC
Q 024245           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVG  141 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  141 (270)
                      |.++.|++  . ..+++++.|.+|+.||++++....    .+.+.... .+++  ..+....++.+   ...++||.+.+
T Consensus       263 Vs~V~w~d--~-~v~yS~SwDHTIk~WDletg~~~~----~~~~~ksl-~~i~--~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  263 VSSVVWSD--A-TVIYSVSWDHTIKVWDLETGGLKS----TLTTNKSL-NCIS--YSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             eeeEEEcC--C-CceEeecccceEEEEEeeccccee----eeecCcce-eEee--cccccceeeecCCCCceeecCCCCC
Confidence            99999998  5 789999999999999999997643    33333222 2222  23333333333   34566777654


Q ss_pred             --ceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245          142 --ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (270)
Q Consensus       142 --~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (270)
                        ..+...+.+|.+    +.|+|...++|+ +++.|+++++||+|+.. +++.+.        +|    ...++++. |+
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~-S~S~D~t~klWDvRS~k~plydI~--------~h----~DKvl~vd-W~  398 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLV-SGSYDNTVKLWDVRSTKAPLYDIA--------GH----NDKVLSVD-WN  398 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEE-EEecCCeEEEEEeccCCCcceeec--------cC----CceEEEEe-cc
Confidence              477789999999    899999998876 78899999999999888 999998        77    45788888 98


Q ss_pred             CCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          215 PSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       215 p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                          ++. ++++|+.|.+|+++.-..
T Consensus       399 ----~~~-~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  399 ----EGG-LIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             ----CCc-eEEeccCcceEEEecccc
Confidence                344 899999999999987543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.4e-25  Score=156.35  Aligned_cols=181  Identities=14%  Similarity=0.201  Sum_probs=141.7

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .+|+..|++++|+|.|++||+||.|.++.||.-..+  +++.++.+|..+  |.+++|++  +|++|++++.|+.|-+|.
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEE
Confidence            369999999999999999999999999999987644  788899999954  99999999  999999999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  168 (270)
                      +..+....              +.+                             .+++|..    +.|+|... +|+ ++
T Consensus       134 ~deddEfe--------------c~a-----------------------------VL~~HtqDVK~V~WHPt~d-lL~-S~  168 (312)
T KOG0645|consen  134 IDEDDEFE--------------CIA-----------------------------VLQEHTQDVKHVIWHPTED-LLF-SC  168 (312)
T ss_pred             ecCCCcEE--------------EEe-----------------------------eeccccccccEEEEcCCcc-eeE-Ee
Confidence            87543211              011                             2233333    67999876 333 78


Q ss_pred             CCCceEEEEeCCC---cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          169 EQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       169 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      ++|.+|++|+-..   -++.+++.        +|.    ..++++. |+|.   |. .|++++.|++|+||.+.+ .-  
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~--------g~~----~TVW~~~-F~~~---G~-rl~s~sdD~tv~Iw~~~~-~~--  228 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLD--------GHE----NTVWSLA-FDNI---GS-RLVSCSDDGTVSIWRLYT-DL--  228 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEec--------Ccc----ceEEEEE-ecCC---Cc-eEEEecCCcceEeeeecc-Cc--
Confidence            8999999998762   34788888        663    3899998 9985   44 899999999999999764 11  


Q ss_pred             eeeeccCCCeeEEEeecCCCce
Q 024245          246 TAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                        -..|+.+++.++|. +|..-
T Consensus       229 --~~~~sr~~Y~v~W~-~~~Ia  247 (312)
T KOG0645|consen  229 --SGMHSRALYDVPWD-NGVIA  247 (312)
T ss_pred             --chhcccceEeeeec-ccceE
Confidence              12367788888888 55443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=6.1e-25  Score=189.16  Aligned_cols=223  Identities=16%  Similarity=0.237  Sum_probs=161.0

Q ss_pred             ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      +...|.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|.  ..|++++|+|. ++.+|++|+.|++|++||+++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~--~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE--KRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC--CCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence            346899999998 57899999999999999999999999998888  66999999963 568999999999999999998


Q ss_pred             CccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~  169 (270)
                      +....    .+... .....+.+..  ..........+...+||+...+.....+.+|..    +.|. ++..++  +++
T Consensus       608 ~~~~~----~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s  679 (793)
T PLN00181        608 GVSIG----TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSS  679 (793)
T ss_pred             CcEEE----EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEE
Confidence            75433    33322 2222222211  112223334556778998876654455667766    7776 555443  566


Q ss_pred             CCceEEEEeCCCc------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          170 QLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       170 ~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      .|++|+|||++.+      .++..+.        +|..    .+..+. |+|+   +. +|++|+.||.|++|+... ..
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~~----~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~~~-~~  741 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFM--------GHTN----VKNFVG-LSVS---DG-YIATGSETNEVFVYHKAF-PM  741 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEc--------CCCC----CeeEEE-EcCC---CC-EEEEEeCCCEEEEEECCC-CC
Confidence            7999999999753      4566776        6743    455666 9985   44 999999999999999876 33


Q ss_pred             ceeee-------------eccCCCeeEEEeecCCCcee
Q 024245          244 PLTAM-------------KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~-------------~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++..+             ..+...|.+++|+|++.+|.
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv  779 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV  779 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence            33221             23456799999999997763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=5.6e-26  Score=163.50  Aligned_cols=217  Identities=13%  Similarity=0.214  Sum_probs=160.7

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------------C------ceeEEEeecCCCcceEEEEEee
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVATGP   72 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~~~v~~~~~~~   72 (270)
                      -..+..|++++++.+|++||.++|+|+.|..|+|.|++.            +      -.++++-.|.  +.|+++.|+|
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~--devn~l~FHP  182 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV--DEVNDLDFHP  182 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--Ccccceeecc
Confidence            345678999999999999999999999999999999972            1      2345666677  6699999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeecc--C
Q 024245           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDS--L  149 (270)
Q Consensus        73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~  149 (270)
                        ....|++++.|++|++||+......+  .+..-........+++........... -...++||+.+.++.....  .
T Consensus       183 --re~ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  183 --RETILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             --hhheEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence              77899999999999999997654332  111111222333444444333333322 2346778988887665433  3


Q ss_pred             CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       150 ~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      .|..    +.+++.|+ +++ +++.||.|+|||--+++++.++..       +|.   ...+.+.. |..   +|+ |++
T Consensus       259 qht~ai~~V~Ys~t~~-lYv-TaSkDG~IklwDGVS~rCv~t~~~-------AH~---gsevcSa~-Ftk---n~k-yiL  321 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGS-LYV-TASKDGAIKLWDGVSNRCVRTIGN-------AHG---GSEVCSAV-FTK---NGK-YIL  321 (430)
T ss_pred             ccccceeEEEecCCcc-EEE-EeccCCcEEeeccccHHHHHHHHh-------hcC---CceeeeEE-Ecc---CCe-EEe
Confidence            3443    88999997 333 799999999999999999999986       673   34566666 987   566 999


Q ss_pred             EecCCCcEEEEEcCCCCcceeeeecc
Q 024245          226 AGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      +.+.|..+++|.+.+ ++++..+.|-
T Consensus       322 sSG~DS~vkLWEi~t-~R~l~~YtGA  346 (430)
T KOG0640|consen  322 SSGKDSTVKLWEIST-GRMLKEYTGA  346 (430)
T ss_pred             ecCCcceeeeeeecC-CceEEEEecC
Confidence            999999999999999 8888777653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=6.3e-25  Score=154.28  Aligned_cols=224  Identities=12%  Similarity=0.183  Sum_probs=172.1

Q ss_pred             ccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .++||.+.|-.++|+| ...++++++.|.+|++||++.++++..+.....   -.-+.|+|  +|++++.++.|..|...
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp--~g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSP--DGEYIAVGNKDDRITFI  133 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcC--CCCEEEEecCcccEEEE
Confidence            4678999999999999 566999999999999999999999998876653   35689999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~  166 (270)
                      |.++.+......+.     .....+.........++..| +.+.+......+.+ ..+.+|..    +.|+|+|+++.  
T Consensus       134 d~r~~~~~~~~~~~-----~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-~si~AH~snCicI~f~p~GryfA--  205 (313)
T KOG1407|consen  134 DARTYKIVNEEQFK-----FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-QSIKAHPSNCICIEFDPDGRYFA--  205 (313)
T ss_pred             Eecccceeehhccc-----ceeeeeeecCCCCEEEEecCCceEEEEeccccccc-cccccCCcceEEEEECCCCceEe--
Confidence            99987654411111     11222333334444444444 45555555543333 35667776    89999998764  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +|+.|..+.+||+...-+++.+.        .+.-    .+..+. |+.   ||+ +||+|++|..|-|=++++ |..+.
T Consensus       206 ~GsADAlvSLWD~~ELiC~R~is--------Rldw----pVRTlS-FS~---dg~-~lASaSEDh~IDIA~vet-Gd~~~  267 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELICERCIS--------RLDW----PVRTLS-FSH---DGR-MLASASEDHFIDIAEVET-GDRVW  267 (313)
T ss_pred             eccccceeeccChhHhhhheeec--------cccC----ceEEEE-ecc---Ccc-eeeccCccceEEeEeccc-CCeEE
Confidence            68889999999999888888888        4433    455565 987   566 999999999999999999 78788


Q ss_pred             eeeccCCCeeEEEeecCCCcee
Q 024245          247 AMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .++ +.++...++|+|...+|.
T Consensus       268 eI~-~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  268 EIP-CEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             Eee-ccCCceeEEecCCCceee
Confidence            887 688999999999987764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=2.9e-24  Score=164.35  Aligned_cols=232  Identities=20%  Similarity=0.286  Sum_probs=167.3

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      |.....+.+|...++-..|+|.|.|+|+|...|+|+|||....+.+  .+++.-.  ++|..|+|+.  ++++|++.++.
T Consensus        49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEG  124 (603)
T KOG0318|consen   49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEG  124 (603)
T ss_pred             ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecC
Confidence            3456778899999999999999999999999999999998764332  3444444  7799999999  99999877653


Q ss_pred             ----CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce--eeeccCCCCC----eE
Q 024245           86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK----DD  155 (270)
Q Consensus        86 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~  155 (270)
                          |.+.+||-  +...    -.+.++........+...... .+.+++.+....+..+..  ....+..|..    +.
T Consensus       125 rerfg~~F~~DS--G~Sv----Gei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  125 RERFGHVFLWDS--GNSV----GEITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             ccceeEEEEecC--CCcc----ceeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence                24555654  4332    255555555544444333322 234444555555444433  3345566666    89


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |+|||..+ +++| .||.|.+||-.+++.+..+..         .....+.++++. |+|++   . .++|++.|.+++|
T Consensus       198 ysPDG~~F-at~g-sDgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs---~-~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  198 YSPDGSRF-ATAG-SDGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDS---T-QFLTVSADKTIKI  261 (603)
T ss_pred             ECCCCCeE-EEec-CCccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCC---c-eEEEecCCceEEE
Confidence            99999754 4445 599999999999999999983         223477899998 99964   4 8999999999999


Q ss_pred             EEcCCCCc-------------------------------------------ceeeeeccCCCeeEEEeecCCCce
Q 024245          236 WDIRNPGI-------------------------------------------PLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       236 wd~~~~~~-------------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ||+.+ .+                                           ++..+.||...|+++..+||+++|
T Consensus       262 WdVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  262 WDVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             EEeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence            99876 22                                           234567888999999999988775

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=7.4e-25  Score=176.32  Aligned_cols=193  Identities=17%  Similarity=0.211  Sum_probs=140.8

Q ss_pred             CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      +++..+.+|...|.+++|+|++ .+|++|+.|+.|+|||+.+++.+..+..|.  ..|.+++|+|  ++++|++++.|++
T Consensus       116 ~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~--~~V~sla~sp--dG~lLatgs~Dg~  191 (493)
T PTZ00421        116 DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS--DQITSLEWNL--DGSLLCTTSKDKK  191 (493)
T ss_pred             cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC--CceEEEEEEC--CCCEEEEecCCCE
Confidence            4678899999999999999975 699999999999999999999988888888  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      |++||+++++...    .+..+..... ..                                    +.|.+++..++. +
T Consensus       192 IrIwD~rsg~~v~----tl~~H~~~~~-~~------------------------------------~~w~~~~~~ivt-~  229 (493)
T PTZ00421        192 LNIIDPRDGTIVS----SVEAHASAKS-QR------------------------------------CLWAKRKDLIIT-L  229 (493)
T ss_pred             EEEEECCCCcEEE----EEecCCCCcc-eE------------------------------------EEEcCCCCeEEE-E
Confidence            9999999875422    2322221100 00                                    336677665553 3


Q ss_pred             c---CCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCC
Q 024245          168 G---EQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPG  242 (270)
Q Consensus       168 ~---~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~  242 (270)
                      |   +.|+.|++||+++.. ++....        .+   ....+.... |+|+   +. +|++|+ .|+.|++||+.+ +
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~--------~d---~~~~~~~~~-~d~d---~~-~L~lggkgDg~Iriwdl~~-~  292 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVD--------LD---QSSALFIPF-FDED---TN-LLYIGSKGEGNIRCFELMN-E  292 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEec--------cC---CCCceEEEE-EcCC---CC-EEEEEEeCCCeEEEEEeeC-C
Confidence            3   358999999998755 333332        11   112333344 8874   44 666666 699999999998 6


Q ss_pred             cceeeeec-cCCCeeEEEeecCC
Q 024245          243 IPLTAMKV-HLEPGLECSMWRNP  264 (270)
Q Consensus       243 ~~~~~~~~-~~~~v~~~~~s~~g  264 (270)
                      +++..... +..++..++|.|..
T Consensus       293 ~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        293 RLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             ceEEEeeccCCCCCcceEecccc
Confidence            76665543 34577888888853

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.6e-25  Score=157.49  Aligned_cols=231  Identities=19%  Similarity=0.249  Sum_probs=166.8

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|.  ++|..+.|-+...-..|+|||.|++|+.|
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecc--cceeEEEEecCCCcceeEecccccceeec
Confidence            4456689999999999999999999999999999999984 44667788  77999999983223389999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~  165 (270)
                      |.+....+    .++.-.   ....+.+. .+.......+..+.+++++++..........-.     ++...+.+..++
T Consensus       143 D~R~~~pv----~t~~LP---eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al  215 (347)
T KOG0647|consen  143 DTRSSNPV----ATLQLP---ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL  215 (347)
T ss_pred             ccCCCCee----eeeecc---ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence            99976432    222211   11222222 233444555666677888666544333322222     666677665543


Q ss_pred             EecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccC--C---CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          166 VAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSK--G---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~--~---~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                        |+-.|.+.|..+..+.  .-.+|+        .|...  .   --.+.+++ |+|.  .|  .|+|++.||++.+||-
T Consensus       216 --GsiEGrv~iq~id~~~~~~nFtFk--------CHR~~~~~~~~VYaVNsi~-FhP~--hg--tlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  216 --GSIEGRVAIQYIDDPNPKDNFTFK--------CHRSTNSVNDDVYAVNSIA-FHPV--HG--TLVTAGSDGTFSFWDK  280 (347)
T ss_pred             --eeecceEEEEecCCCCccCceeEE--------EeccCCCCCCceEEecceE-eecc--cc--eEEEecCCceEEEecc
Confidence              6778999999988763  334444        35421  1   22466787 9996  34  8999999999999999


Q ss_pred             CCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .. ...+...+.|..+|++.+|+.+|.++.
T Consensus       281 da-r~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  281 DA-RTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             hh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence            88 777888888999999999999998763

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=4.6e-25  Score=174.78  Aligned_cols=234  Identities=15%  Similarity=0.160  Sum_probs=179.9

Q ss_pred             CcccccccccccEEEEEEe-CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ++.+.+-|..+.|.+|+|- |+.++||.++..+.+++|++.+..+. .+.+|.  +.|.++....  .|.+|+||+.|.+
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~--e~vlSL~~~~--~g~llat~sKD~s  388 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT--EAVLSLDVWS--SGDLLATGSKDKS  388 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch--hheeeeeecc--cCcEEEEecCCce
Confidence            4566778888999999986 47789999999999999999877776 888998  6799999555  5679999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeec--cCCccceecCCCCceEEEeccCce----ee----eccCCCCC----
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYANAKQANEPKDCYEREVGET----VD----TDSLCDSK----  153 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~----  153 (270)
                      +++|.++++.....++....++......+...  ..+............+|++...+.    +.    .....|..    
T Consensus       389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence            99999966654444444555555544444442  222223333344556687765221    11    12344555    


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++++|+.+ ++ ++|+.|.+.+||+++..+...++.        ||    +..++++. |+|.   .+ .++|+|.|++|
T Consensus       469 Vaia~ndk-Li-AT~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv  529 (775)
T KOG0319|consen  469 VAIAPNDK-LI-ATGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV  529 (775)
T ss_pred             eEecCCCc-eE-EecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence            89999986 44 589999999999999999999999        88    44689998 9995   34 99999999999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +||.+.+ ..++.++.||...|..++|-.+|+.|
T Consensus       530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             EEEEecc-ceeeeeecCccceeEeeeeeeCCcEE
Confidence            9999999 99999999999999999999988665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.2e-25  Score=167.38  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=153.7

Q ss_pred             CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCc-------eeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      +|-..|.||++.=++|+|++.. -.|++|+.|+.|++||+....       +...+.+|.  +.|..++|++.+. ++|+
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~h~-~lF~  244 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPLHE-DLFG  244 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--cceehhhccccch-hhhe
Confidence            3445799999988999999943 489999999999999997532       345667787  7799999999744 8899


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  160 (270)
                      +++.|+.+.|||++++  ..++....+.+.....+                                      ++|+|-+
T Consensus       245 sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~--------------------------------------~~fnp~~  284 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNC--------------------------------------VAFNPFN  284 (422)
T ss_pred             eecCCCeEEEEEcCCC--CCCCcccccccCCceeE--------------------------------------EEeCCCC
Confidence            9999999999999974  22333344444333322                                      4588888


Q ss_pred             CeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      .+++| +|+.|++|.+||+|... ++.++.        +|    ...+..+. |+|.  ... .||+++.|+.+.|||+.
T Consensus       285 ~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh--~et-vLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  285 EFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPH--NET-VLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCC--CCc-eeEecccCCcEEEEecc
Confidence            87776 78889999999999754 677777        67    45788998 9996  333 99999999999999987


Q ss_pred             CCCc-------------ceeeeeccCCCeeEEEeecCCCc
Q 024245          240 NPGI-------------PLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       240 ~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      ..++             ++....||...|..+.|+|+...
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            6433             34666799999999999997654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.2e-25  Score=165.88  Aligned_cols=197  Identities=19%  Similarity=0.342  Sum_probs=160.6

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.+.+|+||...|+.+.|+|+...+++++.|..|+||.............|.  .+|+.+..+|  .|.+|++++.|++
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~--~~V~~ls~h~--tgeYllsAs~d~~  326 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE--EPVTGLSLHP--TGEYLLSASNDGT  326 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc--ccceeeeecc--CCcEEEEecCCce
Confidence            46789999999999999999999999999999999999998888777888888  7799999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      ..+.|++++....    ..... ...+.+..                                   .+|+|||-  ++.+
T Consensus       327 w~Fsd~~~g~~lt----~vs~~-~s~v~~ts-----------------------------------~~fHpDgL--ifgt  364 (506)
T KOG0289|consen  327 WAFSDISSGSQLT----VVSDE-TSDVEYTS-----------------------------------AAFHPDGL--IFGT  364 (506)
T ss_pred             EEEEEccCCcEEE----EEeec-cccceeEE-----------------------------------eeEcCCce--EEec
Confidence            9999999987533    11111 01010110                                   45999994  4458


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~  247 (270)
                      |..|+.|+|||+.++..+..|.        +|.    +.+.+++ |+.   +|. +|+++.+|+.|++||+|. -+.+.+
T Consensus       365 gt~d~~vkiwdlks~~~~a~Fp--------ght----~~vk~i~-FsE---NGY-~Lat~add~~V~lwDLRK-l~n~kt  426 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKFP--------GHT----GPVKAIS-FSE---NGY-WLATAADDGSVKLWDLRK-LKNFKT  426 (506)
T ss_pred             cCCCceEEEEEcCCccccccCC--------CCC----CceeEEE-ecc---Cce-EEEEEecCCeEEEEEehh-hcccce
Confidence            9999999999999999888998        774    4677787 996   565 999999999999999998 566666


Q ss_pred             eecc-CCCeeEEEeecCCCcee
Q 024245          248 MKVH-LEPGLECSMWRNPITMS  268 (270)
Q Consensus       248 ~~~~-~~~v~~~~~s~~g~~ls  268 (270)
                      +.-. ...|.++.|.+.|.+|-
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             eeccccccceeEEEcCCCCeEE
Confidence            6532 24699999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.1e-26  Score=183.65  Aligned_cols=193  Identities=21%  Similarity=0.354  Sum_probs=162.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++-.|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|.  ..+.++.|+|  -+.++++++.|..+
T Consensus        61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~--~~~~sv~f~P--~~~~~a~gStdtd~  136 (825)
T KOG0267|consen   61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL--LNITSVDFHP--YGEFFASGSTDTDL  136 (825)
T ss_pred             chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc--cCcceeeecc--ceEEeccccccccc
Confidence            4566689999999999999999999999999999999999999999999999  5699999999  88999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++||++...+..    ...++......                                      +.|+|+|.++.  .|
T Consensus       137 ~iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v~--~g  172 (825)
T KOG0267|consen  137 KIWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWVA--SG  172 (825)
T ss_pred             eehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCceee--cc
Confidence            999999765533    33332211111                                      45999997443  67


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      ++|.+++|||+..|+.+..|+        +|    .+.+.++. |+|.+-    ++++|+.|++|++||+++ .+.+...
T Consensus       173 ~ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~  234 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSG  234 (825)
T ss_pred             CCcceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeecc
Confidence            789999999999999999999        66    44667777 998643    999999999999999998 7777777


Q ss_pred             eccCCCeeEEEeecCCCce
Q 024245          249 KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~~l  267 (270)
                      +.....|.+.+|+|+++.+
T Consensus       235 ~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             CCccCCceeeeecCCceee
Confidence            7778899999999998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=1.2e-24  Score=155.69  Aligned_cols=198  Identities=18%  Similarity=0.209  Sum_probs=140.7

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      .-+++||.++|..+.|.+|+..+++++.|.+|+.||+++|++++.+++|.  .-|+++.-+.. +..++.|++.|+++++
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--~~vNs~~p~rr-g~~lv~SgsdD~t~kl  159 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--SFVNSLDPSRR-GPQLVCSGSDDGTLKL  159 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc--ceeeecCcccc-CCeEEEecCCCceEEE
Confidence            45678999999999999999999999999999999999999999999998  66888884442 3356679999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecC-----------------------------------------
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-----------------------------------------  129 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  129 (270)
                      ||+++....+......     .  ..++.+.....-...                                         
T Consensus       160 ~D~R~k~~~~t~~~ky-----q--ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  160 WDIRKKEAIKTFENKY-----Q--LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             Eeecccchhhccccce-----e--EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence            9999876554211010     1  111111111111111                                         


Q ss_pred             ----CCCceEEEeccC---ceeeeccCCCCC--------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC
Q 024245          130 ----NEPKDCYEREVG---ETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       130 ----~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                          .....+|+++..   +.....+.+|..        .+|+|++..+  .+|+.|..+++||......++.+.     
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i--~ags~dr~vyvwd~~~r~~lyklp-----  305 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI--TAGSADRFVYVWDTTSRRILYKLP-----  305 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc--ccccccceEEEeecccccEEEEcC-----
Confidence                112233444322   121223444433        7888988754  357788999999998888888888     


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                         ||    .+.+..++ |+|.++    +|.+++.|.+|++=.
T Consensus       306 ---Gh----~gsvn~~~-Fhp~e~----iils~~sdk~i~lge  336 (338)
T KOG0265|consen  306 ---GH----YGSVNEVD-FHPTEP----IILSCSSDKTIYLGE  336 (338)
T ss_pred             ---Cc----ceeEEEee-ecCCCc----EEEEeccCceeEeec
Confidence               77    56889998 999876    999999999998743

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.6e-24  Score=158.70  Aligned_cols=212  Identities=19%  Similarity=0.279  Sum_probs=165.7

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.++.+.||-+.|.|++.+|.-..|++|++|.+++|||+++...+..+.+|.  .+|..+.+.|  -...+++||.|++
T Consensus       225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~--~dpqvit~S~D~t  300 (460)
T KOG0285|consen  225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASVMCQP--TDPQVITGSHDST  300 (460)
T ss_pred             hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeEEeec--CCCceEEecCCce
Confidence            36788999999999999999999999999999999999999999999999999  6699999998  5578999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      |++||+..++..    .++..+.....++...........+.......|++..+..+.. +.+|..    ++...||  +
T Consensus       301 vrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~iintl~~nsD~--v  373 (460)
T KOG0285|consen  301 VRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG--V  373 (460)
T ss_pred             EEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccccceeeeeeeccCc--e
Confidence            999999998653    3666677777767666655555666666677788888877665 778877    4555555  3


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ++ +|+++|.+.+||.+++...+.++.....   |-- ..+..+++.+ |...+.    .|++|..|.+|++|.-..
T Consensus       374 ~~-~G~dng~~~fwdwksg~nyQ~~~t~vqp---GSl-~sEagI~as~-fDktg~----rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  374 LV-SGGDNGSIMFWDWKSGHNYQRGQTIVQP---GSL-ESEAGIFASC-FDKTGS----RLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EE-EcCCceEEEEEecCcCcccccccccccC---Ccc-ccccceeEEe-ecccCc----eEEeccCCcceEEEeccc
Confidence            43 6888999999999998766655321111   111 1233456665 886533    899999999999998654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-25  Score=178.18  Aligned_cols=219  Identities=19%  Similarity=0.282  Sum_probs=171.3

Q ss_pred             cEEEEEEeC-CCCEEEEecCCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        20 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .+..+.|+. +.++||+++..|.|.+||+..   .+.+..|..|.  ..+.++.|++. ..++|++||+||+|++||++.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~--Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~  165 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE--RSANKLDFHST-EPNILISGSQDGTVKCWDLRS  165 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc--cceeeeeeccC-CccEEEecCCCceEEEEeeec
Confidence            456677876 567999999999999999987   56666788888  66999999986 458999999999999999998


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      .+...  .+.-.........+++...........++....||++........+.+|.+    +.|+|++. ++ ++|+.|
T Consensus       166 ~~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~l-ATGGRD  241 (839)
T KOG0269|consen  166 KKSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WL-ATGGRD  241 (839)
T ss_pred             ccccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-ee-eecCCC
Confidence            76543  222222333444555555555566777889999999999988889999999    78999765 44 478899


Q ss_pred             ceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--CCcEEEEEcCCCCcceee
Q 024245          172 SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       172 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~~  247 (270)
                      +.|+|||+.+++.  +.++.             ....+.++. |-|..   ++.|++++.  |-.|+|||++.+.-|..+
T Consensus       242 K~vkiWd~t~~~~~~~~tIn-------------Tiapv~rVk-WRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTIN-------------TIAPVGRVK-WRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             ccEEEEeccCCCccceeEEe-------------ecceeeeee-eccCc---cchhhhhhccccceEEEEeecccccccee
Confidence            9999999987653  33333             234677887 99963   347888864  668999999998899999


Q ss_pred             eeccCCCeeEEEeec
Q 024245          248 MKVHLEPGLECSMWR  262 (270)
Q Consensus       248 ~~~~~~~v~~~~~s~  262 (270)
                      +..|...++.++|..
T Consensus       305 ~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDS  319 (839)
T ss_pred             eeccCccccceeccC
Confidence            999999999999976

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2.1e-24  Score=177.64  Aligned_cols=236  Identities=17%  Similarity=0.211  Sum_probs=170.6

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------------------CceeEEEeecCCCcceEEEE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA   69 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~v~~~~   69 (270)
                      |+.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||+...                  .+.+..+.+|.  ..|..++
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--~DV~Dv~  136 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--SDVLDVN  136 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC--Cccceec
Confidence            477888999999999999999999999999999999999772                  13567788898  4499999


Q ss_pred             EeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc---eEEEeccCcee--
Q 024245           70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETV--  144 (270)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--  144 (270)
                      |+|  ++.+|++++.|++|.+||..+.+...    .+.++......+.++  +.+.+++..+.+   .+|.+.+....  
T Consensus       137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~----vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK----VLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             cCC--CccEEEEecccceEEEEccccceeee----eeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEe
Confidence            999  99999999999999999999986544    666666655544443  444455544444   44654442222  


Q ss_pred             -eeccCCCCC------eEecCCCCeEEEEecCC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          145 -DTDSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       145 -~~~~~~~~~------~~~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                       ...+..-..      +.|||||.++...-+-.  -.++.|.+..+-+.-..|-        ||..    .+.++. |+|
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH~~----p~evvr-FnP  275 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GHSA----PVEVVR-FNP  275 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cCCC----ceEEEE-eCh
Confidence             222221111      89999999776432221  2468888887777677777        7844    566666 988


Q ss_pred             C-----CCCC-------c-eEEEEecCCCcEEEEEcCCCCcceeeee-ccCCCeeEEEeecCCCce
Q 024245          216 S-----KSQG-------F-VNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPGLECSMWRNPITM  267 (270)
Q Consensus       216 ~-----~~~g-------~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l  267 (270)
                      .     ..+|       . ..+|+|+.|++|.||.... .+|+.... -....|.+++|+|||..|
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeE
Confidence            4     1111       1 1689999999999999987 56655443 346789999999999765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.1e-24  Score=155.73  Aligned_cols=192  Identities=19%  Similarity=0.280  Sum_probs=143.8

Q ss_pred             cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc------------ee---EEEeecCCCcceEEEEEeeCCCCC
Q 024245           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR------------TV---SSSWVHSAAHGIVSVATGPSIGLN   77 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~~~v~~~~~~~~~~~~   77 (270)
                      .+-|.+.|+++...+ .|+++++|+.||.|.|||+++-.            ++   ..-.+|.  -.|..+.|.|. |..
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG  115 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG  115 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence            446899999999998 89999999999999999997632            10   0012344  66999999997 557


Q ss_pred             EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec
Q 024245           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  157 (270)
                      .+.+++.|.++++||.++.+...  .+.+++.-+.                                         -++|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYs-----------------------------------------hamS  152 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYS-----------------------------------------HAMS  152 (397)
T ss_pred             eeecccccceEEEeecccceeeE--EeecCceeeh-----------------------------------------hhcC
Confidence            88899999999999999875432  2222221111                                         1133


Q ss_pred             CCC-CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       158 ~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      |-. +.-++++|..|-.|++-|+.+|...+++.        ||    ++.++++. |+|.   ..+.|++|+.||.|++|
T Consensus       153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW  216 (397)
T ss_pred             hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence            322 23455578889999999999999999999        88    44788998 9996   33489999999999999


Q ss_pred             EcCCCCcceeee--------------eccCCCeeEEEeecCCCce
Q 024245          237 DIRNPGIPLTAM--------------KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       237 d~~~~~~~~~~~--------------~~~~~~v~~~~~s~~g~~l  267 (270)
                      |++....+...+              ..|.+.|++++|+.||.++
T Consensus       217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             EeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            998742333333              3466789999999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.3e-25  Score=175.36  Aligned_cols=205  Identities=16%  Similarity=0.287  Sum_probs=144.5

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .++|++.|+||.+.|.+++||.++ +|+++|.|.+|++|++...+++++|. |.  +.|+|++|+|. |.+++++|+.||
T Consensus       358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~  432 (712)
T KOG0283|consen  358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDG  432 (712)
T ss_pred             cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeeccccc
Confidence            358999999999999999999876 89999999999999999999999886 55  77999999998 559999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC---CCceEEEeccCceeee---------ccCCCCC-
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDT---------DSLCDSK-  153 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~-  153 (270)
                      .|+||++...+...     .......+.+  ++..+.+..+..|   +...+|+....+....         ...++.- 
T Consensus       433 KvRiWsI~d~~Vv~-----W~Dl~~lITA--vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT  505 (712)
T KOG0283|consen  433 KVRLWSISDKKVVD-----WNDLRDLITA--VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT  505 (712)
T ss_pred             ceEEeecCcCeeEe-----ehhhhhhhee--EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence            99999998776432     1111222222  2233333333333   3334455544432221         1112211 


Q ss_pred             -eEecCCCCe-EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          154 -DDVPAEGPK-YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       154 -~~~s~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                       +.|.|.... +|+ +. .|..|||||.++..++..|+        |+... . .-.... |+.   ||+ +|+++++|.
T Consensus       506 G~Q~~p~~~~~vLV-TS-nDSrIRI~d~~~~~lv~KfK--------G~~n~-~-SQ~~As-fs~---Dgk-~IVs~seDs  568 (712)
T KOG0283|consen  506 GLQFFPGDPDEVLV-TS-NDSRIRIYDGRDKDLVHKFK--------GFRNT-S-SQISAS-FSS---DGK-HIVSASEDS  568 (712)
T ss_pred             eeEecCCCCCeEEE-ec-CCCceEEEeccchhhhhhhc--------ccccC-C-cceeee-Ecc---CCC-EEEEeecCc
Confidence             666655443 554 33 58999999999999999999        55332 1 223333 887   566 999999999


Q ss_pred             cEEEEEcCC
Q 024245          232 SILVWDIRN  240 (270)
Q Consensus       232 ~i~vwd~~~  240 (270)
                      .|++|+...
T Consensus       569 ~VYiW~~~~  577 (712)
T KOG0283|consen  569 WVYIWKNDS  577 (712)
T ss_pred             eEEEEeCCC
Confidence            999999854

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=150.98  Aligned_cols=237  Identities=15%  Similarity=0.150  Sum_probs=175.0

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      -.+|++.|..+...-.|+.||+++.|++|+|+.+++.   +.+.++.+|.  ++|..++|....-|++|++++.||.|.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecCceEEE
Confidence            4579999999888888999999999999999999764   5677889998  7799999965446799999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce---EEEeccC--ceeeeccCCCCC----eEecCC--
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD---CYEREVG--ETVDTDSLCDSK----DDVPAE--  159 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~----~~~s~~--  159 (270)
                      |.-++++..+  ......+......++.+++..+..++.++.++   +.+....  .........|..    ++|.|.  
T Consensus        85 Wke~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   85 WKEENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EecCCCchhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            9999987654  44455566667777777777777666655444   3343332  233445555555    778775  


Q ss_pred             -C----------CeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          160 -G----------PKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       160 -~----------~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                       |          .+-|+ +|+.|..|+||+..+++-  -.+|.        +|.    +.+..++ |.|.-.-.+.+|++
T Consensus       163 ~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~----dwVRDVA-waP~~gl~~s~iAS  228 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHK----DWVRDVA-WAPSVGLPKSTIAS  228 (299)
T ss_pred             CccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhh--------hcc----hhhhhhh-hccccCCCceeeEE
Confidence             3          12243 677899999999987642  23355        674    4666776 99875445569999


Q ss_pred             ecCCCcEEEEEcCCCCc--ceeeeeccCCCeeEEEeecCCCcee
Q 024245          227 GYEDGSILVWDIRNPGI--PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +++||+|.||..+...+  ....++.....++.++||..|..|+
T Consensus       229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILA  272 (299)
T ss_pred             ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEE
Confidence            99999999998774222  2333444567899999999999886

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.6e-24  Score=165.89  Aligned_cols=223  Identities=16%  Similarity=0.204  Sum_probs=176.8

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      ++..|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.+ |.  ..|-+++|..    ..+.+|+.|+.|..+|++.
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence            388999999999999999999999999999999999999988 76  6799999976    7899999999999999998


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCce---EEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD---CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  168 (270)
                      .+....   .+..+....|.+...  .+...++.++.+.   +||.. ...+...+..|..    ++|+|-...+||+.|
T Consensus       290 ~~~~~~---~~~~H~qeVCgLkws--~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  290 SQHVVS---TLQGHRQEVCGLKWS--PDGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             chhhhh---hhhcccceeeeeEEC--CCCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence            865431   356666677766554  4445555555544   45552 2334445666666    899999888887543


Q ss_pred             -CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245          169 -EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       169 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~  247 (270)
                       +.|+.|++||..++..+..+..             ...|..+. |+|..  .++...-|..++.|.||+..+ .+++..
T Consensus       364 Gs~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~~~~  426 (484)
T KOG0305|consen  364 GSADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKLVAE  426 (484)
T ss_pred             CCcccEEEEEEcCCCcEeccccc-------------CCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cceeee
Confidence             4699999999999999888873             45788888 99963  332334445678999999999 889999


Q ss_pred             eeccCCCeeEEEeecCCCcee
Q 024245          248 MKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       248 ~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.+|...|..+++||||..|.
T Consensus       427 l~gH~~RVl~la~SPdg~~i~  447 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIV  447 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEE
Confidence            999999999999999998764

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.4e-23  Score=170.02  Aligned_cols=196  Identities=14%  Similarity=0.184  Sum_probs=136.9

Q ss_pred             cccccccccccEEEEEEeCCCCE-EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++..+.+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. +.  ..|.+++|+|  +|.+|++++.|+.|
T Consensus       117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~--~~V~Slswsp--dG~lLat~s~D~~I  191 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP--KKLSSLKWNI--KGNLLSGTCVGKHM  191 (568)
T ss_pred             ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC--CcEEEEEECC--CCCEEEEEecCCEE
Confidence            45678899999999999998875 5799999999999999988777665 33  5699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++||+++++...    .+..+........+..                                 ..|++++.+++. +|
T Consensus       192 rIwD~Rsg~~i~----tl~gH~g~~~s~~v~~---------------------------------~~fs~d~~~IlT-tG  233 (568)
T PTZ00420        192 HIIDPRKQEIAS----SFHIHDGGKNTKNIWI---------------------------------DGLGGDDNYILS-TG  233 (568)
T ss_pred             EEEECCCCcEEE----EEecccCCceeEEEEe---------------------------------eeEcCCCCEEEE-EE
Confidence            999999886432    3443332211100000                                 125677776553 45


Q ss_pred             CCC---ceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          169 EQL---SEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       169 ~~d---~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ..+   +.|+|||++. ++++..+..        + . ..+.++..  |.++  +|. ++++|+.|+.|++|++.. +. 
T Consensus       234 ~d~~~~R~VkLWDlr~~~~pl~~~~l--------d-~-~~~~L~p~--~D~~--tg~-l~lsGkGD~tIr~~e~~~-~~-  296 (568)
T PTZ00420        234 FSKNNMREMKLWDLKNTTSALVTMSI--------D-N-ASAPLIPH--YDES--TGL-IYLIGKGDGNCRYYQHSL-GS-  296 (568)
T ss_pred             cCCCCccEEEEEECCCCCCceEEEEe--------c-C-CccceEEe--eeCC--CCC-EEEEEECCCeEEEEEccC-Cc-
Confidence            433   4799999995 556665541        1 1 12222222  4443  465 899999999999999986 43 


Q ss_pred             eeeeec--cCCCeeEEEeecCCC
Q 024245          245 LTAMKV--HLEPGLECSMWRNPI  265 (270)
Q Consensus       245 ~~~~~~--~~~~v~~~~~s~~g~  265 (270)
                      +..+..  +..++.+++|.|+..
T Consensus       297 ~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        297 IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEeecccccCCCccceEEccccc
Confidence            233322  457888999999653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-24  Score=161.74  Aligned_cols=229  Identities=16%  Similarity=0.184  Sum_probs=171.3

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ++++.-.+..|.++.|-.||++||+|...|.|+|+|+++...++.+..|.  .+|..+.|+|. ++..|++|+.|+.+++
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~-d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ--APVHVTKFSPQ-DNTMLVSGSDDKVVKY  137 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc--CceeEEEeccc-CCeEEEecCCCceEEE
Confidence            34455567889999999999999999999999999987777788888998  77999999995 4567889999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeecc-CCCCC--eEecCCCCeEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDS-LCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~  165 (270)
                      ||+.+...    ...+.++.....+.++.....  .......+.+..||++........+ .++.-  +.+-|.|.. ++
T Consensus       138 ~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~-ia  212 (487)
T KOG0310|consen  138 WDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL-IA  212 (487)
T ss_pred             EEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE-EE
Confidence            99998863    346667777766666554433  3333445566778888764332233 22222  788888864 44


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      ++|+  ..|+|||+-+|........       .|    ...++|+. +..   ++. .|++|+-|+.|++||+.+ .+.+
T Consensus       213 sAgG--n~vkVWDl~~G~qll~~~~-------~H----~KtVTcL~-l~s---~~~-rLlS~sLD~~VKVfd~t~-~Kvv  273 (487)
T KOG0310|consen  213 SAGG--NSVKVWDLTTGGQLLTSMF-------NH----NKTVTCLR-LAS---DST-RLLSGSLDRHVKVFDTTN-YKVV  273 (487)
T ss_pred             EcCC--CeEEEEEecCCceehhhhh-------cc----cceEEEEE-eec---CCc-eEeecccccceEEEEccc-eEEE
Confidence            4453  7899999996664433331       35    44788887 775   344 999999999999999877 7888


Q ss_pred             eeeeccCCCeeEEEeecCCCce
Q 024245          246 TAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..+. ..++|.+++.+||++.+
T Consensus       274 ~s~~-~~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  274 HSWK-YPGPVLSIAVSPDDQTV  294 (487)
T ss_pred             Eeee-cccceeeEEecCCCceE
Confidence            8887 47899999999988764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-22  Score=140.29  Aligned_cols=238  Identities=16%  Similarity=0.199  Sum_probs=163.5

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------C-----ce-e---EEEeecCCCcceEEEEEeeCC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H-----RT-V---SSSWVHSAAHGIVSVATGPSI   74 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~-----~~-~---~~~~~~~~~~~v~~~~~~~~~   74 (270)
                      .+.+|. -..+|.+++|+|.|.+.+.|+...+++|.....      +     ++ .   +.-+.|.  +.|+|.+|+|  
T Consensus        25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~--   99 (350)
T KOG0641|consen   25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP--   99 (350)
T ss_pred             EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--
Confidence            344443 467899999999999999999999999875432      1     11 1   1112344  7799999999  


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCC-CCccceecccceEEEEee--ccCCccceecCCC--CceEE--EeccCceeeec
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSS-NPSLTIKTNSYHFCKLSL--VKEPYANAKQANE--PKDCY--EREVGETVDTD  147 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~  147 (270)
                      .|++|++|+.|++|++..++...+.. -+-..+..+...+..+.+  ........+..++  .-.++  |...++.. ..
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~-~a  178 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF-HA  178 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc-ee
Confidence            99999999999999998776544321 112223333333333333  2333333333322  22233  34444333 35


Q ss_pred             cCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceE
Q 024245          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       148 ~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      +.+|..   .-++.++- ++ ++|+.|.+|++||++...++.++...      -|... ....+.+++ ..|.   |+ +
T Consensus       179 ~sghtghilalyswn~~-m~-~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-l  245 (350)
T KOG0641|consen  179 LSGHTGHILALYSWNGA-MF-ASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-L  245 (350)
T ss_pred             ecCCcccEEEEEEecCc-EE-EccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-e
Confidence            667777   34556664 44 48999999999999999988887632      23322 234566776 8885   66 9


Q ss_pred             EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      |++|-.|....+||++. +++++.+..|+..|.++.|||...||
T Consensus       246 l~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yl  288 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYL  288 (350)
T ss_pred             eeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEE
Confidence            99999999999999998 89999999999999999999988776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=2.7e-24  Score=150.43  Aligned_cols=203  Identities=20%  Similarity=0.281  Sum_probs=161.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++.|+ |+.-|.+++|+.|.++|++|+.+..++|+|++.. .+...+.+|.  +.|..+.|..  ..+.+++...|++|
T Consensus        93 elhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght--g~Ir~v~wc~--eD~~iLSSadd~tV  167 (334)
T KOG0278|consen   93 ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT--GGIRTVLWCH--EDKCILSSADDKTV  167 (334)
T ss_pred             hhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC--CcceeEEEec--cCceEEeeccCCce
Confidence            445554 8899999999999999999999999999999865 4667888888  6699999998  77899999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc-CCCCC-eEecCCCCeEEEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK-DDVPAEGPKYMAV  166 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~~~~~~~  166 (270)
                      |+||.+++..++    .+.. ......+.+........++.++.+.+|+......++..- ..... ..++|+...++  
T Consensus       168 RLWD~rTgt~v~----sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV--  240 (334)
T KOG0278|consen  168 RLWDHRTGTEVQ----SLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV--  240 (334)
T ss_pred             EEEEeccCcEEE----EEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEE--
Confidence            999999998655    2221 122334555566677788889999999998887665432 22222 77889985443  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +|++|..++.||..+++.+..+..       ||    .+.+.++. |+|+   |. ..++|++||+|++|...-
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nk-------gh----~gpVhcVr-FSPd---GE-~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNK-------GH----FGPVHCVR-FSPD---GE-LYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ecCcceEEEEEeccCCceeeeccc-------CC----CCceEEEE-ECCC---Cc-eeeccCCCceEEEEEecC
Confidence            688899999999999998888632       66    55788898 9995   55 999999999999999875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-24  Score=157.15  Aligned_cols=232  Identities=15%  Similarity=0.150  Sum_probs=169.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++++.|.||++.|+.++.......+.+++.|.+-+||.++++.|+..+.+|.  +.|++|+|++  .+.++++++.|++.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~--s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT--GSVNSIKFHN--SGLLLLTASGDETA  214 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc--cceeeEEecc--ccceEEEccCCcch
Confidence            5788899999999999998888899999999999999999999999999999  6699999999  88999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      +||...-.-....+... ..+......-..+...     -........|-.+-+.+...+.+|..    ..|-..|+.++
T Consensus       215 HIW~~av~~~vP~~~a~-~~hSsEeE~e~sDe~~-----~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v  288 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAP-SDHSSEEEEEHSDEHN-----RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV  288 (481)
T ss_pred             HHHHHhhcCcCCCCCCC-CCCCchhhhhcccccc-----cccccccccCCceeeeeeeeeeccccceEehhhhcCcceee
Confidence            99974322111100000 0000000000000000     00000111122233455567778887    34556777655


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                        +++.|.+..+||+++++++..+.        ||...    .+.++ -+|.   .+ ++++.+.|-+.++||++..-..
T Consensus       289 --TaSWDRTAnlwDVEtge~v~~Lt--------GHd~E----LtHcs-tHpt---Qr-LVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  289 --TASWDRTANLWDVETGEVVNILT--------GHDSE----LTHCS-THPT---QR-LVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             --eeeccccceeeeeccCceecccc--------Ccchh----ccccc-cCCc---ce-EEEEeccCceeEeccchhhcce
Confidence              78899999999999999999999        88553    33333 6775   33 9999999999999999975677


Q ss_pred             eeeeeccCCCeeEEEeecCCCceec
Q 024245          245 LTAMKVHLEPGLECSMWRNPITMSE  269 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~ls~  269 (270)
                      +..|+||.+.|+++.|..|.+++|.
T Consensus       350 V~VFQGHtdtVTS~vF~~dd~vVSg  374 (481)
T KOG0300|consen  350 VAVFQGHTDTVTSVVFNTDDRVVSG  374 (481)
T ss_pred             eeeecccccceeEEEEecCCceeec
Confidence            8999999999999999999998873

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=2.2e-24  Score=164.83  Aligned_cols=242  Identities=12%  Similarity=0.131  Sum_probs=168.6

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc----eeEEE-eecCCCcceEEEEEeeCCCCCEEEE
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSS-WVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      |......+++|+..|.++++.|.|..|++|+.|-.|++||+..-.    ..+.+ ....  ..|.++.|++  .|+.|++
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~--Tg~~iLv  231 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSV--TGDQILV  231 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecC--CCCeEEE
Confidence            344567789999999999999999999999999999999997531    12222 2233  3499999999  8888888


Q ss_pred             EeCCCcEEEEEccCCccCC-----CCccce---ecccceEE--EEeeccCCccceecCCCCceEEEeccCceeeecc---
Q 024245           82 QGRDGTVKCWDIENGGLSS-----NPSLTI---KTNSYHFC--KLSLVKEPYANAKQANEPKDCYEREVGETVDTDS---  148 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~-----~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (270)
                      .+.....+|+|-.......     ..+..+   ++|.....  ++.+............+..++|++.+.+.....+   
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            8888899999976543322     111111   22222222  2333333344555667788999998765433322   


Q ss_pred             -CCCCC-----eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          149 -LCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       149 -~~~~~-----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                       .+-..     ++|+++|+. + ++|..||+|.+|+.+...  +...+..       +|..  ...+.++. |+++   |
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~-i-Aagc~DGSIQ~W~~~~~~v~p~~~vk~-------AH~~--g~~Itsi~-FS~d---g  376 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKL-I-AAGCLDGSIQIWDKGSRTVRPVMKVKD-------AHLP--GQDITSIS-FSYD---G  376 (641)
T ss_pred             cCCCcccCceeeecCCCcch-h-hhcccCCceeeeecCCcccccceEeee-------ccCC--CCceeEEE-eccc---c
Confidence             11111     899999985 3 367789999999986543  3333433       6643  23678888 9984   5


Q ss_pred             ceEEEEecCCCcEEEEEcCCCCcceeeeeccC--CCeeEEEeecCCCcee
Q 024245          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL--EPGLECSMWRNPITMS  268 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~ls  268 (270)
                      + +|++-+.|+++++||++...+++....+-.  -+-+.++|||+.++|-
T Consensus       377 ~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~  425 (641)
T KOG0772|consen  377 N-YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL  425 (641)
T ss_pred             c-hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence            5 999999999999999999888888877643  3557899999988763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=150.58  Aligned_cols=227  Identities=15%  Similarity=0.198  Sum_probs=158.1

Q ss_pred             CcccccccccccEEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++..++.|.++  |+.++++|  .+++-++.+.|+
T Consensus        74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~  149 (362)
T KOG0294|consen   74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ  149 (362)
T ss_pred             hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence            35667778999999999999655  8999999999999999999999999999954  99999999  888888999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .+++||+..++...  +..+......   +.+..............+.+|.+...............++..+.....++ 
T Consensus       150 ~lr~WNLV~Gr~a~--v~~L~~~at~---v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~-  223 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAF--VLNLKNKATL---VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL-  223 (362)
T ss_pred             eeeeehhhcCccce--eeccCCccee---eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence            99999999886532  2222222211   33333344344455555666766665544433222222333333333343 


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC----
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----  242 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~----  242 (270)
                      +|.+|+.|.+||..+..+...+.        +|...+.+...    |..  +++. +|+|+++||.|+|||+++..    
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~~----~~~--~~~~-~lvTaSSDG~I~vWd~~~~~k~~~  288 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIAS----YTN--PEHE-YLVTASSDGFIKVWDIDMETKKRP  288 (362)
T ss_pred             EecCCceEEEeccCCCccceeee--------cchhheeeeEE----Eec--CCce-EEEEeccCceEEEEEccccccCCc
Confidence            46779999999999988888888        89775554431    221  1344 99999999999999998731    


Q ss_pred             cceeeeeccCCCeeEEEee
Q 024245          243 IPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s  261 (270)
                      .++..+.- ...++|+...
T Consensus       289 ~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  289 TLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             ceeEEeec-CCccceeeeh
Confidence            34444442 4566666553

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.7e-24  Score=173.15  Aligned_cols=191  Identities=16%  Similarity=0.260  Sum_probs=158.2

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      ..++.-+..|.+++|+|...+++++--.|.|++||.+=+.++..|..|.  ++|..++|+|  .+.+++||+.|-.|++|
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~--~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHP--TQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecC--CCCeEEecCCccEEEEE
Confidence            3456667889999999999999999999999999999999999999999  7799999999  88899999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      +..+.++    ++++.++-..+..                                      +.|++.-+.++  ++|+|
T Consensus        79 nYk~rrc----lftL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDD  114 (1202)
T KOG0292|consen   79 NYKTRRC----LFTLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDD  114 (1202)
T ss_pred             eccccee----hhhhccccceeEE--------------------------------------eeccCCCceEE--EccCC
Confidence            9998865    4566666544432                                      23666656444  78899


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC-------C--
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-------G--  242 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~-------~--  242 (270)
                      .+|+||+..+++++..+.        ||    ...++|.+ |+|.+.    .++++|.|.+|+|||+...       +  
T Consensus       115 QTIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~  177 (1202)
T KOG0292|consen  115 QTIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSL  177 (1202)
T ss_pred             CeEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCc
Confidence            999999999999999999        88    44899998 999754    9999999999999997521       1  


Q ss_pred             -------------------cceeeeeccCCCeeEEEeecCCCce
Q 024245          243 -------------------IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 -------------------~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                                         .....+.||...|+-++|+|.-.+|
T Consensus       178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli  221 (1202)
T KOG0292|consen  178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI  221 (1202)
T ss_pred             hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence                               0234578999999999999964443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=151.48  Aligned_cols=238  Identities=17%  Similarity=0.206  Sum_probs=148.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----ee------------------------------
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TV------------------------------   53 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~------------------------------   53 (270)
                      -.+..|+||.+.|++++|+.||++||+++.|++|+||+++.-.     ++                              
T Consensus        77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            4567899999999999999999999999999999999987511     11                              


Q ss_pred             -EEEee---c------------------CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccc
Q 024245           54 -SSSWV---H------------------SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (270)
Q Consensus        54 -~~~~~---~------------------~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  111 (270)
                       ..+..   .                  .+...|..+-...  ++.+|++++.|..|.+|+++ |+.+.    .+..+..
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~----~idtnq~  229 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQ----SIDTNQS  229 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceee----eeccccc
Confidence             01100   0                  0012234444444  67899999999999999998 54433    3333322


Q ss_pred             --eEEEEeeccCCccceecCCCCceEEEeccCc-----e--eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEe
Q 024245          112 --HFCKLSLVKEPYANAKQANEPKDCYEREVGE-----T--VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD  178 (270)
Q Consensus       112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd  178 (270)
                        ..+.+++++..... ..-.-.+..|.+--.+     .  ....+.||..    .+|+++..+++  +.+.||+++|||
T Consensus       230 ~n~~aavSP~GRFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkDG~wriwd  306 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKDGKWRIWD  306 (420)
T ss_pred             cccceeeCCCCcEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecCCcEEEee
Confidence              22233333221111 1112344556543221     1  1236678888    89999998765  677899999999


Q ss_pred             CCC----cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-eccCC
Q 024245          179 LNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLE  253 (270)
Q Consensus       179 ~~~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~  253 (270)
                      ..-    ++--+.++..   ..+-|..  .+....+. .+|.   |+ .| +.+....++++..++ ++....+ ..|..
T Consensus       307 tdVrY~~~qDpk~Lk~g---~~pl~aa--g~~p~RL~-lsP~---g~-~l-A~s~gs~l~~~~se~-g~~~~~~e~~h~~  374 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEG---SAPLHAA--GSEPVRLE-LSPS---GD-SL-AVSFGSDLKVFASED-GKDYPELEDIHST  374 (420)
T ss_pred             ccceEecCCCchHhhcC---Ccchhhc--CCCceEEE-eCCC---Cc-EE-EeecCCceEEEEccc-CccchhHHHhhcC
Confidence            753    2222222210   0011222  22334676 8884   54 34 444456799999998 5555444 46899


Q ss_pred             CeeEEEeecCCCcee
Q 024245          254 PGLECSMWRNPITMS  268 (270)
Q Consensus       254 ~v~~~~~s~~g~~ls  268 (270)
                      .|.+|+|+++|+++.
T Consensus       375 ~Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  375 TISSISYSSDGKYIA  389 (420)
T ss_pred             ceeeEEecCCCcEEe
Confidence            999999999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=6.2e-24  Score=159.63  Aligned_cols=193  Identities=16%  Similarity=0.227  Sum_probs=147.4

Q ss_pred             cccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc----------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        16 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      -|.+.|+.+.+.| +..++|+++..+.|.|||..+..          +-..+.+|..+  -++++|++.. ...|++++.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~-~g~Lls~~~  198 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQ-EGTLLSGSD  198 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--cccccccccc-ceeEeeccC
Confidence            4999999999999 45578888999999999986532          11267788753  7889999963 367999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~  160 (270)
                      |++|.+||+........ ..                                      .....+.+|..    ++|++-.
T Consensus       199 d~~i~lwdi~~~~~~~~-~~--------------------------------------~p~~~~~~h~~~VeDV~~h~~h  239 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDK-VV--------------------------------------DPKTIFSGHEDVVEDVAWHPLH  239 (422)
T ss_pred             CCcEEEEeccccccCCc-cc--------------------------------------cceEEeecCCcceehhhccccc
Confidence            99999999986543110 00                                      01112333443    6788888


Q ss_pred             CeEEEEecCCCceEEEEeCCC--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          161 PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      ..+++++ ++|+.+.|||+|+  .++.....        +|    .+.+.++. |+|.  ++. .||||+.|++|++||+
T Consensus       240 ~~lF~sv-~dd~~L~iwD~R~~~~~~~~~~~--------ah----~~~vn~~~-fnp~--~~~-ilAT~S~D~tV~LwDl  302 (422)
T KOG0264|consen  240 EDLFGSV-GDDGKLMIWDTRSNTSKPSHSVK--------AH----SAEVNCVA-FNPF--NEF-ILATGSADKTVALWDL  302 (422)
T ss_pred             hhhheee-cCCCeEEEEEcCCCCCCCccccc--------cc----CCceeEEE-eCCC--CCc-eEEeccCCCcEEEeec
Confidence            8888754 4699999999995  44444444        56    45788888 9996  344 9999999999999999


Q ss_pred             CCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      |+..+++.++.+|...|.++.|||+...+
T Consensus       303 RnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  303 RNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             hhcccCceeccCCCcceEEEEeCCCCCce
Confidence            99999999999999999999999976543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.6e-23  Score=149.12  Aligned_cols=228  Identities=16%  Similarity=0.289  Sum_probs=176.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++..+..|.++|++++.+  +.++|+||.|-+|+|||+.+...+..+..|.  +.|+++.|.+....+.|++|+.||.|
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcE
Confidence            4578889999999999985  8899999999999999999999999998897  77999999983223489999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      .+|+...-.++.    .++.+...+..+++.++.... ........+.|++-+++.-......+..  +.|+|.|.++++
T Consensus       110 ~iw~~~~W~~~~----slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  110 IIWRVGSWELLK----SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             EEEEcCCeEEee----eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            999998765544    666776666666666655443 3444556678998888766555555555  999999998876


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       .+  ...|-||.+.+......+..             ...+.++. |.    ++. +|++|+.|+.|.+||..+ ..+.
T Consensus       186 -~~--~~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l----~~~-~L~vG~d~~~i~~~D~ds-~~~~  242 (362)
T KOG0294|consen  186 -SG--RNKIDIYQLDNASVFREIEN-------------PKRILCAT-FL----DGS-ELLVGGDNEWISLKDTDS-DTPL  242 (362)
T ss_pred             -Ee--ccEEEEEecccHhHhhhhhc-------------cccceeee-ec----CCc-eEEEecCCceEEEeccCC-Cccc
Confidence             34  26799999988777766662             12234444 54    344 899999999999999998 8999


Q ss_pred             eeeeccCCCeeEEEee--cCCCce
Q 024245          246 TAMKVHLEPGLECSMW--RNPITM  267 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s--~~g~~l  267 (270)
                      ..+.+|...|-++.+-  |++.||
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEE
Confidence            9999999999998843  344443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.8e-23  Score=156.02  Aligned_cols=231  Identities=15%  Similarity=0.170  Sum_probs=172.4

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-   96 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-   96 (270)
                      .+.|.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+..|-  ..|+++.|+.  ||.+|+||+.||.|.+|++..- 
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence            4679999999999999999899999999999999999998888  5599999999  9999999999999999987432 


Q ss_pred             ----ccCCCCccceecccceEEEEeeccCCccceecCCC---CceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245           97 ----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA  167 (270)
Q Consensus        97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~  167 (270)
                          .....|...+..|...+..+.+...+....+.+.+   ...+|++..+..+........-  +++.|.+..++  .
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y--i  234 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY--I  234 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE--e
Confidence                11235566777777777777776665554444444   4456888888776654433333  88999998766  4


Q ss_pred             cCCCceEEEEeCCCcce--e------eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          168 GEQLSEVEIWDLNTAER--C------TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~--~------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      |..+|.|.+.++.....  .      ............||.+.  ..+++++ .+-   ||. +|++|+.||+|+|||+.
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~---Dgt-lLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-IST---DGT-LLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-Eec---Ccc-EEEeeCCCCCEEEEecc
Confidence            88899999988753220  0      00110001122367543  4566666 665   455 99999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeec
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      + .++++++....++|+.+.+.|
T Consensus       308 S-~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  308 S-KQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             h-HHHHHHHhhhccccceeEeec
Confidence            9 899999886678999999965

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.1e-23  Score=155.71  Aligned_cols=203  Identities=14%  Similarity=0.224  Sum_probs=161.3

Q ss_pred             cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++.+++|+.+|..+.|+| ++..+++|+.|+.+++||+.+......+.+|+  +.|.+.+|+|. ++..++|||.||+|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~-~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPA-NDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--ceeEeeccccC-CCeEEEecCCCceE
Confidence            5788999999999999999 56688999999999999999888766788888  78999999996 33688999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      ++||.+....   .+..+ .+......+-..++......+.|....+||+..+......+..|..    +++..++..|+
T Consensus       179 rl~DtR~~~~---~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  179 RLWDTRSLTS---RVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             EEEEeccCCc---eeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence            9999987641   12222 2223333334444445566778888999999988777766666766    78888888776


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                        +++-|+.+++||+.+-+.+..+.             ..+.+++++ .+|+   ++ .++.|..||.+.+-+..
T Consensus       255 --S~sLD~~VKVfd~t~~Kvv~s~~-------------~~~pvLsia-vs~d---d~-t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  255 --SGSLDRHVKVFDTTNYKVVHSWK-------------YPGPVLSIA-VSPD---DQ-TVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             --ecccccceEEEEccceEEEEeee-------------cccceeeEE-ecCC---Cc-eEEEecccceeeeehhh
Confidence              68889999999988888888887             467899998 9985   44 89999999998877443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=9.5e-24  Score=152.11  Aligned_cols=240  Identities=13%  Similarity=0.129  Sum_probs=171.9

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .+++|..|.+.|+++.|+|....|++|+.|++|+++|..+....+.++.-....+|.++.|+|  .|.+|+.|..-.+++
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~r  241 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLR  241 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCcee
Confidence            689999999999999999999999999999999999998654444333322226799999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKY  163 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~  163 (270)
                      +||+++.++..... .-..+...++.+...... ......-.+.+.+||--.++++...-..|..     ..|+.+|+++
T Consensus       242 lYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  242 LYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             EEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            99999987643111 222233333333332222 1233344566778888888888888888887     6799999877


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCCcEEEEEcCCCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPG  242 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg~i~vwd~~~~~  242 (270)
                      |  +++.|..+++|.+.+++++.++.+...+....       ...... |+..+.    |++.- -..+.+.-||.++..
T Consensus       321 L--sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-------~rtqAv-FNhtEd----yVl~pDEas~slcsWdaRtad  386 (430)
T KOG0640|consen  321 L--SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-------HRTQAV-FNHTED----YVLFPDEASNSLCSWDARTAD  386 (430)
T ss_pred             e--ecCCcceeeeeeecCCceEEEEecCCcccchh-------hhhhhh-hcCccc----eEEccccccCceeeccccchh
Confidence            6  55679999999999999999998421111111       122222 776532    44444 345789999999944


Q ss_pred             cceeeeeccCCCeeEEEeecCCCc
Q 024245          243 IPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      +....-.+|++++..+.-||.+..
T Consensus       387 r~~l~slgHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  387 RVALLSLGHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             hhhhcccCCCCCceEEEeCCCCCc
Confidence            433334589999999999997654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=167.57  Aligned_cols=217  Identities=18%  Similarity=0.278  Sum_probs=170.0

Q ss_pred             ccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           12 AVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        12 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+.+ +...+.+..|+  +.++++++.|++|++||..++..+.. +.+|.  +.|.++++..  .++++++|+.|.+++
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--g~V~~l~~~~--~~~~lvsgS~D~t~r  274 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--GGVWGLAFPS--GGDKLVSGSTDKTER  274 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC--CCceeEEEec--CCCEEEEEecCCcEE
Confidence            44444 56788999998  45899999999999999999988888 99999  6799999987  679999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA  167 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~  167 (270)
                      +||..++.+..    .+.++......+........ .......+..|++.++..+.. +.+|..  -+..-++..++  +
T Consensus       275 vWd~~sg~C~~----~l~gh~stv~~~~~~~~~~~-sgs~D~tVkVW~v~n~~~l~l-~~~h~~~V~~v~~~~~~lv--s  346 (537)
T KOG0274|consen  275 VWDCSTGECTH----SLQGHTSSVRCLTIDPFLLV-SGSRDNTVKVWDVTNGACLNL-LRGHTGPVNCVQLDEPLLV--S  346 (537)
T ss_pred             eEecCCCcEEE----EecCCCceEEEEEccCceEe-eccCCceEEEEeccCcceEEE-eccccccEEEEEecCCEEE--E
Confidence            99999998765    66667666665554432211 123456677899998777664 444766  44445565444  6


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-ccee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLT  246 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~~~~  246 (270)
                      |+.|++|++||+.++++++++.        ||.    ..+.++. +.+.    . .+++|+.|++|++||+++ . +++.
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~--------gH~----~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c~~  407 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLS--------GHT----GRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKCIH  407 (537)
T ss_pred             EecCceEEEEEhhhceeeeeec--------CCc----ceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhhhh
Confidence            8889999999999999999999        784    4677766 6641    2 899999999999999999 6 8999


Q ss_pred             eeeccCCCeeEEEee
Q 024245          247 AMKVHLEPGLECSMW  261 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s  261 (270)
                      ++.+|.+-+..+.+.
T Consensus       408 tl~~h~~~v~~l~~~  422 (537)
T KOG0274|consen  408 TLQGHTSLVSSLLLR  422 (537)
T ss_pred             hhcCCcccccccccc
Confidence            999999888766553

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=1.5e-23  Score=166.76  Aligned_cols=233  Identities=18%  Similarity=0.206  Sum_probs=176.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++++++..  +.+.+..|.|.++++++|...|.+.++|+.+...+.+++.|.  +.|.+++.+|  ++..+++||.|.+|
T Consensus       405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd--gaIWsi~~~p--D~~g~vT~saDktV  478 (888)
T KOG0306|consen  405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD--GAIWSISLSP--DNKGFVTGSADKTV  478 (888)
T ss_pred             ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc--cceeeeeecC--CCCceEEecCCcEE
Confidence            45555542  478889999999999999999999999999998888889998  5699999999  99999999999999


Q ss_pred             EEEEccCCccCC---CCcccee---cccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eE
Q 024245           89 KCWDIENGGLSS---NPSLTIK---TNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        89 ~~wd~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                      ++||..--....   .-.+.++   .-......+++..++++..++.+-.   ..++-+.+.+- ...+.||.-    +.
T Consensus       479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smD  557 (888)
T KOG0306|consen  479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMD  557 (888)
T ss_pred             EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccceeEEe
Confidence            999975221100   0011111   1112223344455555555554433   33344444332 235667766    88


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      +|||++.+  ++|+.|.+|++|-+.-|.|-+.+-        +|.+    .++++. |-|.   .. ++++++.|+.|+-
T Consensus       558 IS~DSkli--vTgSADKnVKiWGLdFGDCHKS~f--------AHdD----Svm~V~-F~P~---~~-~FFt~gKD~kvKq  618 (888)
T KOG0306|consen  558 ISPDSKLI--VTGSADKNVKIWGLDFGDCHKSFF--------AHDD----SVMSVQ-FLPK---TH-LFFTCGKDGKVKQ  618 (888)
T ss_pred             ccCCcCeE--EeccCCCceEEeccccchhhhhhh--------cccC----ceeEEE-Eccc---ce-eEEEecCcceEEe
Confidence            99999743  378899999999999999999998        7844    788998 9995   33 8999999999999


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||-.. .+.++.+.+|...|++++.+|+|.++-
T Consensus       619 WDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vv  650 (888)
T KOG0306|consen  619 WDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVV  650 (888)
T ss_pred             echhh-hhhheeeccchheeeeeEEcCCCCeEE
Confidence            99998 899999999999999999999997764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=6.3e-24  Score=154.10  Aligned_cols=188  Identities=12%  Similarity=0.214  Sum_probs=151.2

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      -+.++|.|++|+.|.+.||+|+.||.|+||.+++|.|++.|. .|.  .+|+++.|+.  |+..+++++.|.++++--+.
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt--kGvt~l~FSr--D~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT--KGVTCLSFSR--DNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc--cCeeEEEEcc--CcchhhcccccceEEEeccc
Confidence            367899999999999999999999999999999999999997 777  6699999999  98999999999999999999


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      +|++.+    .+.++......                                      ..|+++|.+++  +++.||+|
T Consensus       337 SGK~LK----EfrGHsSyvn~--------------------------------------a~ft~dG~~ii--saSsDgtv  372 (508)
T KOG0275|consen  337 SGKCLK----EFRGHSSYVNE--------------------------------------ATFTDDGHHII--SASSDGTV  372 (508)
T ss_pred             cchhHH----HhcCccccccc--------------------------------------eEEcCCCCeEE--EecCCccE
Confidence            998765    55555433321                                      34889998776  56679999


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec---c
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---H  251 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~  251 (270)
                      ++|+..+.+++.+|+..      +    ....+.++. .-|..  -. .++.+...++|++.++.  ++.++.+..   .
T Consensus       373 kvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKn--pe-h~iVCNrsntv~imn~q--GQvVrsfsSGkRE  436 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKN--PE-HFIVCNRSNTVYIMNMQ--GQVVRSFSSGKRE  436 (508)
T ss_pred             EEecCcchhhhhhccCC------C----CcccceeEE-EcCCC--Cc-eEEEEcCCCeEEEEecc--ceEEeeeccCCcc
Confidence            99999999999999841      1    233455665 66652  22 78888899999999987  677777753   2


Q ss_pred             CCCeeEEEeecCCCce
Q 024245          252 LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~l  267 (270)
                      .+...+.+.||.|.+|
T Consensus       437 gGdFi~~~lSpkGewi  452 (508)
T KOG0275|consen  437 GGDFINAILSPKGEWI  452 (508)
T ss_pred             CCceEEEEecCCCcEE
Confidence            3456677888888765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=9.2e-24  Score=165.40  Aligned_cols=199  Identities=19%  Similarity=0.314  Sum_probs=153.9

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEE-eeCCCCCEEEEEeCCC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG   86 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~d~   86 (270)
                      .+..++.|.+.|+.+....+++.|+++|.|-+|++|+...+  -++.++..|.  +.|.|+++ .+  +...+++|+.|+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak--~~~lvaSgGLD~  140 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAK--NNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc--chheeeeeccc--CceeEEecCCCc
Confidence            57889999999999999999999999999999999999877  6788888888  88999999 55  668899999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .|.+||++++....  +..+  .....+..           ..+..+.+|.                ++.++.|. + ++
T Consensus       141 ~IflWDin~~~~~l--~~s~--n~~t~~sl-----------~sG~k~siYS----------------LA~N~t~t-~-iv  187 (735)
T KOG0308|consen  141 KIFLWDINTGTATL--VASF--NNVTVNSL-----------GSGPKDSIYS----------------LAMNQTGT-I-IV  187 (735)
T ss_pred             cEEEEEccCcchhh--hhhc--cccccccC-----------CCCCccceee----------------eecCCcce-E-EE
Confidence            99999999873200  0011  11111100           0011111111                44556663 3 34


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +|+..+.+++||.++++.+..+.        ||.+.    +-.+. .++   ||. .++++++||+|++||+.. .+++.
T Consensus       188 sGgtek~lr~wDprt~~kimkLr--------GHTdN----Vr~ll-~~d---DGt-~~ls~sSDgtIrlWdLgq-QrCl~  249 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTDN----VRVLL-VND---DGT-RLLSASSDGTIRLWDLGQ-QRCLA  249 (735)
T ss_pred             ecCcccceEEeccccccceeeee--------ccccc----eEEEE-EcC---CCC-eEeecCCCceEEeeeccc-cceee
Confidence            78889999999999999999999        89654    44444 665   566 999999999999999998 89999


Q ss_pred             eeeccCCCeeEEEeecC
Q 024245          247 AMKVHLEPGLECSMWRN  263 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~  263 (270)
                      ++..|+..|+++..+|+
T Consensus       250 T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  250 TYIVHKEGVWALQSSPS  266 (735)
T ss_pred             eEEeccCceEEEeeCCC
Confidence            99999999999988875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-22  Score=142.14  Aligned_cols=215  Identities=17%  Similarity=0.243  Sum_probs=162.9

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---   84 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---   84 (270)
                      .+.+.++.||+++|+|++..-+.++|++|+.|.++++||+++|+++..++..   .+|..+.|++  +|++++....   
T Consensus        42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~m  116 (327)
T KOG0643|consen   42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQM  116 (327)
T ss_pred             CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhhc
Confidence            3567899999999999999999999999999999999999999999998865   6799999999  9888776543   


Q ss_pred             --CCcEEEEEccCCcc---CCCCccceecccceEEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC---
Q 024245           85 --DGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK---  153 (270)
Q Consensus        85 --d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---  153 (270)
                        .+.|.++|++....   ...|...+.......  ....+.+....+..   .+.+..||.++++........|..   
T Consensus       117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski--t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~In  194 (327)
T KOG0643|consen  117 GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI--TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIN  194 (327)
T ss_pred             CcceEEEEEEccCChhhhcccCceEEecCCccce--eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccc
Confidence              46899999984431   123444444443222  23334444444433   456678999998877777666666   


Q ss_pred             -eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc----------------------------------------
Q 024245          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS----------------------------------------  192 (270)
Q Consensus       154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------------------  192 (270)
                       +.+++|..+++  +++.|.+-++||+++-+.++++....                                        
T Consensus       195 d~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy  272 (327)
T KOG0643|consen  195 DLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY  272 (327)
T ss_pred             cccccCCcceEE--ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence             99999998665  78899999999999988887776332                                        


Q ss_pred             -------CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          193 -------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       193 -------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                             .+.+.||    -+.+.+++ |+|+   |. ..++|++||.|++.-...
T Consensus       273 h~i~eEEigrvkGH----FGPINsvA-fhPd---Gk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  273 HLIFEEEIGRVKGH----FGPINSVA-FHPD---GK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             HHHHHHHhcccccc----ccCcceeE-ECCC---Cc-ccccCCCCceEEEEEecc
Confidence                   1122345    45788888 9995   55 899999999999986654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4.9e-22  Score=142.88  Aligned_cols=225  Identities=16%  Similarity=0.176  Sum_probs=161.6

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .|..++.+++|.++ ..+++|+.||.|+++|+.++.... +..|.  .+|.+|.+++  ..+.+++|+.|++|++||.+.
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence            38999999999874 578999999999999999876553 44566  7799999998  778999999999999999997


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-----eEecCCCCeEEEEecCC
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~  170 (270)
                      ...    ...+.... .+-++++..+ .......+..+.+||+++...........-.     +++-|++..+++  ++-
T Consensus       126 ~~~----~~~~d~~k-kVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSi  197 (323)
T KOG1036|consen  126 KVV----VGTFDQGK-KVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSI  197 (323)
T ss_pred             ccc----ccccccCc-eEEEEeccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE--Eee
Confidence            432    22333222 2222332221 1222345566777888877655432222222     788887776664  667


Q ss_pred             CceEEEEeCCCc----ceeeeeccCcCCCCCCcccCC-----CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          171 LSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       171 d~~i~iwd~~~~----~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      ||.|.+=.+...    +..+.|+        .|....     --.+.+++ |+|-.  +  .|+||+.||.|.+||+.+ 
T Consensus       198 eGRVavE~~d~s~~~~skkyaFk--------CHr~~~~~~~~~yPVNai~-Fhp~~--~--tfaTgGsDG~V~~Wd~~~-  263 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFK--------CHRLSEKDTEIIYPVNAIA-FHPIH--G--TFATGGSDGIVNIWDLFN-  263 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEE--------eeecccCCceEEEEeceeE-ecccc--c--eEEecCCCceEEEccCcc-
Confidence            899988776655    3445555        454322     23577888 99963  2  799999999999999998 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+.+..+......|.+++|+.||..|.
T Consensus       264 rKrl~q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  264 RKRLKQLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             hhhhhhccCCCCceEEEEeccCCCeEE
Confidence            788888887778899999999998874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=7.7e-23  Score=168.58  Aligned_cols=200  Identities=16%  Similarity=0.151  Sum_probs=147.1

Q ss_pred             ccccEEEEEEeCCCCEEEEec--CCCcEEEEeCCC------------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ++..|.+++.+|+|..+|+|+  .|+.++||+.+.            .+.+.....|.  +.|.|+.|+|  ||.+||+|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~CVR~S~--dG~~lAsG   87 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVNCVRFSP--DGSYLASG   87 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--CceeEEEECC--CCCeEeec
Confidence            456799999999999999999  899999998753            12334455666  7799999999  99999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~  158 (270)
                      ++|+.|.+|+.....  ....+...+.......+                          .....+.+|..    ++|+|
T Consensus        88 SDD~~v~iW~~~~~~--~~~~fgs~g~~~~vE~w--------------------------k~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIG--SGTVFGSTGGAKNVESW--------------------------KVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             cCcceEEEeeecccC--Cccccccccccccccee--------------------------eEEEEEecCCCccceeccCC
Confidence            999999999987411  01111111111111111                          12224556666    89999


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      ++.+++  +++.|++|.||+.++.+.+.++.        +|..    .+-.+. |.|.   |+ |||+-+.|++|++|++
T Consensus       140 ~~~~lv--S~s~DnsViiwn~~tF~~~~vl~--------~H~s----~VKGvs-~DP~---Gk-y~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  140 DDSLLV--SVSLDNSVIIWNAKTFELLKVLR--------GHQS----LVKGVS-WDPI---GK-YFASQSDDRTLKVWRT  200 (942)
T ss_pred             CccEEE--EecccceEEEEccccceeeeeee--------cccc----cccceE-ECCc---cC-eeeeecCCceEEEEEc
Confidence            997443  78889999999999999999999        7855    455555 9996   55 9999999999999997


Q ss_pred             CCCCcceeeeeccC------CCeeEEEeecCCCcee
Q 024245          239 RNPGIPLTAMKVHL------EPGLECSMWRNPITMS  268 (270)
Q Consensus       239 ~~~~~~~~~~~~~~------~~v~~~~~s~~g~~ls  268 (270)
                      .+ ......+..+-      ..+..+.|||||++|.
T Consensus       201 ~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  201 SD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cc-ceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            76 55555554432      3567899999999975

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1e-22  Score=150.06  Aligned_cols=194  Identities=14%  Similarity=0.237  Sum_probs=144.4

Q ss_pred             CcccccccccccEEEEEEeCCC--CEEEEecCCCcEEEEeCCC----------------CceeEEEeecCCCcceEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVAT   70 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~v~~~~~   70 (270)
                      +.-...-+|.+.|+.+.-++-+  .+.++=+..|.|+||++..                .+++.++.+|..+  =++++|
T Consensus       142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdW  219 (440)
T KOG0302|consen  142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDW  219 (440)
T ss_pred             cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeec
Confidence            3334455688888888888754  4677778899999999853                2466777888844  799999


Q ss_pred             eeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC
Q 024245           71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (270)
Q Consensus        71 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (270)
                      +|... ..|+||..-+.|++|...++....        ...                                   .+.+
T Consensus       220 Sp~~~-g~LlsGDc~~~I~lw~~~~g~W~v--------d~~-----------------------------------Pf~g  255 (440)
T KOG0302|consen  220 SPIKT-GRLLSGDCVKGIHLWEPSTGSWKV--------DQR-----------------------------------PFTG  255 (440)
T ss_pred             ccccc-cccccCccccceEeeeeccCceee--------cCc-----------------------------------cccc
Confidence            99633 568888888899999998875421        000                                   1222


Q ss_pred             CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       151 ~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      |..    ++|||....+++ +++.||+|+|||+|.+.....+..+      +|    .+-+..+. |+...+    +||+
T Consensus       256 H~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLas  319 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLAS  319 (440)
T ss_pred             cccchhhhccCCccCceEE-eeecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeee
Confidence            333    779999988887 6677999999999988422222211      56    34577776 997544    9999


Q ss_pred             ecCCCcEEEEEcCC--CCcceeeeeccCCCeeEEEeecCC
Q 024245          227 GYEDGSILVWDIRN--PGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       227 ~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      |+.||+++|||++.  .++++..++.|..+|++|.|+|..
T Consensus       320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e  359 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE  359 (440)
T ss_pred             cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence            99999999999986  357999999999999999999843

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-20  Score=130.56  Aligned_cols=232  Identities=15%  Similarity=0.162  Sum_probs=162.9

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce-----eEEEeecCCCcceEEEEEee--CCCCCEEEEEe-
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVISQG-   83 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~-   83 (270)
                      +.-+.|++.|.|.+|+|.|+++++|+.|..|++...+...+     -.++..|.  +.|..++|..  ...+..|++++ 
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC--CceeeeEEecCCCcCceEEEecCC
Confidence            44567899999999999999999999999999987654332     23567787  5599999964  22345666654 


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC-----CCCC-----
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL-----CDSK-----  153 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----  153 (270)
                      .|..|.+-|-..++    +...+.++..++..+-.-.............+++||++-...+...-.     +-+.     
T Consensus       161 gdc~iy~tdc~~g~----~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQ----GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             CcceEEEeecCCCC----cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence            45566666776663    344666666665543322222222223344567788887766654221     1111     


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++..|.|+ ++ ++|..|.+..+||++-++.++.+.        .|    ...+.++. |+|.    ..|+++++.|..|
T Consensus       237 v~vdpsgr-ll-~sg~~dssc~lydirg~r~iq~f~--------ph----sadir~vr-fsp~----a~yllt~syd~~i  297 (350)
T KOG0641|consen  237 VAVDPSGR-LL-ASGHADSSCMLYDIRGGRMIQRFH--------PH----SADIRCVR-FSPG----AHYLLTCSYDMKI  297 (350)
T ss_pred             EEECCCcc-ee-eeccCCCceEEEEeeCCceeeeeC--------CC----ccceeEEE-eCCC----ceEEEEecccceE
Confidence            78889996 34 489999999999999999999998        46    34577777 9984    2399999999999


Q ss_pred             EEEEcCCC---CcceeeeeccCCCeeEEEeecCC-Ccee
Q 024245          234 LVWDIRNP---GIPLTAMKVHLEPGLECSMWRNP-ITMS  268 (270)
Q Consensus       234 ~vwd~~~~---~~~~~~~~~~~~~v~~~~~s~~g-~~ls  268 (270)
                      ++-|+...   .-++.....|++.+..+.|+|.. .+||
T Consensus       298 kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  298 KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             EEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence            99998742   23555666799999999999965 4444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=146.34  Aligned_cols=226  Identities=13%  Similarity=0.181  Sum_probs=163.0

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC------CC--------------------------------
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT------VQ--------------------------------   49 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~------~~--------------------------------   49 (270)
                      .+++.++.||.+.|+++.|++.+.++++++.|++-.||..      ..                                
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            4688999999999999999999999999999999999972      11                                


Q ss_pred             --CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC-ccce
Q 024245           50 --HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANA  126 (270)
Q Consensus        50 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  126 (270)
                        ..++..+.+|.  +.|.+..|..  .|+.+++++.|.+..+||+++++.+.    .+.++.......+..... ....
T Consensus       260 tiRvPl~~ltgH~--~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~----~LtGHd~ELtHcstHptQrLVvT  331 (481)
T KOG0300|consen  260 TIRVPLMRLTGHR--AVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN----ILTGHDSELTHCSTHPTQRLVVT  331 (481)
T ss_pred             eeeeeeeeeeccc--cceEehhhhc--CcceeeeeeccccceeeeeccCceec----cccCcchhccccccCCcceEEEE
Confidence              01233566776  6699999999  99999999999999999999997655    444443332222222211 1122


Q ss_pred             ecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCccc
Q 024245          127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSS  201 (270)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~  201 (270)
                      ..-.....+||++..-.....++||..    +.|..+.+ ++  +|++|.+|++||++..+ ++.++..           
T Consensus       332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vV--SgSDDrTvKvWdLrNMRsplATIRt-----------  397 (481)
T KOG0300|consen  332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VV--SGSDDRTVKVWDLRNMRSPLATIRT-----------  397 (481)
T ss_pred             eccCceeEeccchhhcceeeeecccccceeEEEEecCCc-ee--ecCCCceEEEeeeccccCcceeeec-----------
Confidence            333445567888755555668899988    67777775 32  79999999999998765 6677762           


Q ss_pred             CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee-----eeeccCCCeeEEEeecCC
Q 024245          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-----AMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~v~~~~~s~~g  264 (270)
                        ...+..++ .+..    ...|+.--.+..|++||+..  ..+.     .-.+|...|.|++|..+-
T Consensus       398 --dS~~NRva-vs~g----~~iIAiPhDNRqvRlfDlnG--~RlaRlPrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  398 --DSPANRVA-VSKG----HPIIAIPHDNRQVRLFDLNG--NRLARLPRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             --CCccceeE-eecC----CceEEeccCCceEEEEecCC--CccccCCcccccccceeeeeeeccccC
Confidence              33455555 5532    22788888888999999984  3333     335888999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-22  Score=153.86  Aligned_cols=223  Identities=14%  Similarity=0.164  Sum_probs=176.4

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      .-.|++......++++|+..+.|+|||++...+.+.++.|.  +.|+++.++.  ...+|++++..|.|.|-.+.++...
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecC--CcceeEEeccCCcEEEEecccCccc
Confidence            33455544555899999999999999999777888888888  6699999998  7799999999999999999887653


Q ss_pred             CCCcccee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceE
Q 024245          100 SNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      .  .+... +.......++...........+.+.+.+||+.....+......|..    ++|+|..+.+++..| .|..|
T Consensus       157 t--~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki  233 (673)
T KOG4378|consen  157 T--TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKI  233 (673)
T ss_pred             c--ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceE
Confidence            3  22222 2222233444445555566777888899999988877777777776    999999998887555 69999


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                      .+||.+.......+.-             .....+++ |+|   +|. +|++|...|.|..||++....|+..+..|...
T Consensus       234 ~~yD~~s~~s~~~l~y-------------~~Plstva-f~~---~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s  295 (673)
T KOG4378|consen  234 NIYDIRSQASTDRLTY-------------SHPLSTVA-FSE---CGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS  295 (673)
T ss_pred             EEeecccccccceeee-------------cCCcceee-ecC---Cce-EEEeecCCceEEEEecccCCCCceEeeecccc
Confidence            9999998877777662             23566676 998   465 99999999999999999988999999999999


Q ss_pred             eeEEEeecCCCce
Q 024245          255 GLECSMWRNPITM  267 (270)
Q Consensus       255 v~~~~~s~~g~~l  267 (270)
                      |++++|-|...+|
T Consensus       296 Vt~vafq~s~tvl  308 (673)
T KOG4378|consen  296 VTRVAFQPSPTVL  308 (673)
T ss_pred             eeEEEeeecceee
Confidence            9999999876443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.5e-21  Score=138.99  Aligned_cols=204  Identities=12%  Similarity=0.144  Sum_probs=142.9

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.++.+.||...|+.++.+|-+..+++++.|++|++||++..++...+....    -..++|.|  .|-++|++...+.
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp--~GLifA~~~~~~~  163 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDP--EGLIFALANGSEL  163 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECC--CCcEEEEecCCCe
Confidence            36789999999999999999988999999999999999999888887776554    24688999  9889998888889


Q ss_pred             EEEEEccCCccCCCCccceecc-cceEEEEeeccCCccce--ecC-CCCceEEEeccCceeeeccCCCCC-------eEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANA--KQA-NEPKDCYEREVGETVDTDSLCDSK-------DDV  156 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  156 (270)
                      |++||++.-..  .|...+.-. ......-.+.+++++..  +.+ .+...+.|.-++..+. .+.++..       .+|
T Consensus       164 IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  164 IKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATF  240 (311)
T ss_pred             EEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCCcceeEEE
Confidence            99999987543  333333322 11122222333333332  222 3334456666665332 3333322       789


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      +||++.++  +|+.||+|.+|+++++..+..+..        .   ..+.+.++. |+|.      +..-.+.+..+.+|
T Consensus       241 tPds~Fvl--~gs~dg~i~vw~~~tg~~v~~~~~--------~---~~~~~~~~~-fnP~------~~mf~sa~s~l~fw  300 (311)
T KOG1446|consen  241 TPDSKFVL--SGSDDGTIHVWNLETGKKVAVLRG--------P---NGGPVSCVR-FNPR------YAMFVSASSNLVFW  300 (311)
T ss_pred             CCCCcEEE--EecCCCcEEEEEcCCCcEeeEecC--------C---CCCCccccc-cCCc------eeeeeecCceEEEE
Confidence            99998665  688899999999999999999983        1   244566776 9995      44444455678888


Q ss_pred             EcCC
Q 024245          237 DIRN  240 (270)
Q Consensus       237 d~~~  240 (270)
                      =...
T Consensus       301 ~p~~  304 (311)
T KOG1446|consen  301 LPDE  304 (311)
T ss_pred             eccc
Confidence            6553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=2.1e-21  Score=145.65  Aligned_cols=197  Identities=14%  Similarity=0.172  Sum_probs=152.9

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .....+.|+++|+.+..+|.|.||++++.|+.....|++++.++.........-.+++.+|+|  ||..|.+|..|+.|+
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp--DgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP--DGLIFGTGTPDGVVK  372 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC--CceEEeccCCCceEE
Confidence            445677899999999999999999999999999999999998887765543335589999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +||+.++....    .++++...+..                                      ++|+-+| |+++ ++.
T Consensus       373 iwdlks~~~~a----~Fpght~~vk~--------------------------------------i~FsENG-Y~La-t~a  408 (506)
T KOG0289|consen  373 IWDLKSQTNVA----KFPGHTGPVKA--------------------------------------ISFSENG-YWLA-TAA  408 (506)
T ss_pred             EEEcCCccccc----cCCCCCCceeE--------------------------------------EEeccCc-eEEE-EEe
Confidence            99999875432    44444444432                                      4578888 5555 456


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-CCcceeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PGIPLTAM  248 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-~~~~~~~~  248 (270)
                      +|+.|++||+|..+...++..+           ....+.++. |.+.   |. +|+.++.|=.|++++-.+ ...++..+
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~-----------~~~~v~s~~-fD~S---Gt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~  472 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLD-----------EKKEVNSLS-FDQS---GT-YLGIAGSDLQVYICKKKTKSWTEIKEL  472 (506)
T ss_pred             cCCeEEEEEehhhcccceeecc-----------ccccceeEE-EcCC---CC-eEEeecceeEEEEEecccccceeeehh
Confidence            7899999999998887777731           122467776 8875   44 899998887777777443 14577778


Q ss_pred             eccCCCeeEEEeecCCCcee
Q 024245          249 KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..|.+..+.+.|....+++-
T Consensus       473 ~~~sg~st~v~Fg~~aq~l~  492 (506)
T KOG0289|consen  473 ADHSGLSTGVRFGEHAQYLA  492 (506)
T ss_pred             hhcccccceeeecccceEEe
Confidence            88888899999988877763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.8e-21  Score=135.79  Aligned_cols=215  Identities=17%  Similarity=0.170  Sum_probs=149.1

Q ss_pred             CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +++.+|.||+++|+.++|..  .|.+||++++||.|.||.-++++-.  .....|.  ..|++++|.|..-|-.|++++.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEeeC
Confidence            78999999999999999976  8999999999999999998887543  3445566  7799999999766778999999


Q ss_pred             CCcEEEEEccCC-ccCCCCccceecccceEEEEeeccC--Cc-------------cceecCCCCceEEEeccCc-eeeec
Q 024245           85 DGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKE--PY-------------ANAKQANEPKDCYEREVGE-TVDTD  147 (270)
Q Consensus        85 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~  147 (270)
                      ||.|.|.+.+.. ....  ......+.......+.+..  +.             .........+.+|....++ .....
T Consensus       125 DG~vsvl~~~~~g~w~t--~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~  202 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTT--SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT  202 (299)
T ss_pred             CCcEEEEEEcCCCCccc--hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence            999999998765 2211  1122233333333333322  11             1122223445567666654 33345


Q ss_pred             cCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       148 ~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      +.+|..    ++|.|.-  ....+++++.||++.||-.+...  ...++.           ......++.+. |++.++ 
T Consensus       203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-----------~~f~~~~w~vS-WS~sGn-  269 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-----------EEFPDVVWRVS-WSLSGN-  269 (299)
T ss_pred             hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-----------ccCCcceEEEE-Eecccc-
Confidence            888888    8999864  22334588899999999876221  111221           11355789998 999654 


Q ss_pred             CceEEEEecCCCcEEEEEcCCCCc
Q 024245          220 GFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                         .|+.++.|+.|.+|.-...++
T Consensus       270 ---~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  270 ---ILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             ---EEEEecCCcEEEEEEeCCCCc
Confidence               999999999999998665343

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=148.18  Aligned_cols=225  Identities=14%  Similarity=0.198  Sum_probs=157.2

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEcc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE   94 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~   94 (270)
                      .+.|+++.|+|...+|++|+.|+.++||.+...  ..++.+....  .+|.+.+|.|  +|. .+++++....+..||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence            478999999999999999999999999998643  4555555555  7799999999  888 88999999999999999


Q ss_pred             CCccCCCCccceeccc-ceEEEEeeccCCccceecCCC---CceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEec
Q 024245           95 NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAG  168 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~  168 (270)
                      +.+..+  +....+.. .....+.+..  ...+++..+   .+.+....+++.+.. .+.|... ++|+.+++.+++ +|
T Consensus       289 ~ak~~k--~~~~~g~e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~-~~  363 (514)
T KOG2055|consen  289 TAKVTK--LKPPYGVEEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA-SG  363 (514)
T ss_pred             cccccc--ccCCCCcccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE-Ec
Confidence            987654  22222222 1122222222  222222222   223333333333321 3333333 899999987776 45


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-----CCc
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----PGI  243 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-----~~~  243 (270)
                      + +|.|.+||++...+++++...         +..  .-++++ .++   +|. |||+|+..|.|.|||..+     ..+
T Consensus       364 ~-~GeV~v~nl~~~~~~~rf~D~---------G~v--~gts~~-~S~---ng~-ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  364 G-TGEVYVWNLRQNSCLHRFVDD---------GSV--HGTSLC-ISL---NGS-YLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             C-CceEEEEecCCcceEEEEeec---------Ccc--ceeeee-ecC---CCc-eEEeccCcceEEEeccchhhccCCCC
Confidence            4 699999999999999998842         112  222333 555   455 999999999999999654     256


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |+..+..-...|++++|+||+++|.
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhh
Confidence            7888877788999999999998864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.2e-21  Score=151.88  Aligned_cols=205  Identities=17%  Similarity=0.279  Sum_probs=170.2

Q ss_pred             Cccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.+..+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|..+  |..++|++  +++++++|+.|+
T Consensus       250 k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe--VCgLkws~--d~~~lASGgnDN  323 (484)
T KOG0305|consen  250 KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE--VCGLKWSP--DGNQLASGGNDN  323 (484)
T ss_pred             cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce--eeeeEECC--CCCeeccCCCcc
Confidence            55677888 99999999998  66899999999999999988765544 7788854  99999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CC---ceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EP---KDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~--~~~s~~~  160 (270)
                      .+.|||....    .|.+.+..+...+.++.+++......+..+ ..   ..+|++.++..+.....+-+-  +.|++..
T Consensus       324 ~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  324 VVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY  399 (484)
T ss_pred             ceEeccCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence            9999999544    556788888888888887776665544443 33   455788888877776666655  9999999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.++.+-|..++.|.||+..+.+.+..+.        +|..    .+..++ ++|+   |. .+++|+.|.++++|++-.
T Consensus       400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~--------gH~~----RVl~la-~SPd---g~-~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPSMKLVAELL--------GHTS----RVLYLA-LSPD---GE-TIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccccceeeeec--------CCcc----eeEEEE-ECCC---CC-EEEEecccCcEEeccccC
Confidence            88998888889999999999999888888        8844    588888 9995   55 999999999999999987

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.1e-20  Score=144.33  Aligned_cols=236  Identities=11%  Similarity=0.061  Sum_probs=149.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d~   86 (270)
                      ++++.+.++. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.   .+..++|+|  +++.+++ ++.++
T Consensus        22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~~~   95 (300)
T TIGR03866        22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANEDDN   95 (300)
T ss_pred             ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCCCC
Confidence            4666776554 46789999999876 567789999999999988877766543   256789999  8887754 45689


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC--eEecCCCCe
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK  162 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~  162 (270)
                      .|++||+.+.+...    .+.... ....+.+............  .....|+..+.+.......+...  ++|+|+++.
T Consensus        96 ~l~~~d~~~~~~~~----~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  170 (300)
T TIGR03866        96 LVTVIDIETRKVLA----EIPVGV-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE  170 (300)
T ss_pred             eEEEEECCCCeEEe----EeeCCC-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence            99999998865432    222111 1111222222211111111  22344576665544333222222  899999987


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      +++ ++..++.|++||+++++.+..+......   .+.  .......+. |+|+   ++..+++.+.++.|.+||+++ +
T Consensus       171 l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~--~~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~-~  239 (300)
T TIGR03866       171 LWV-SSEIGGTVSVIDVATRKVIKKITFEIPG---VHP--EAVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT-Y  239 (300)
T ss_pred             EEE-EcCCCCEEEEEEcCcceeeeeeeecccc---ccc--ccCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-C
Confidence            765 5556899999999998877766521000   000  011233455 8884   553455556677899999987 6


Q ss_pred             cceeeeeccCCCeeEEEeecCCCce
Q 024245          243 IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +.+..+. +...+.+++|+|+|++|
T Consensus       240 ~~~~~~~-~~~~~~~~~~~~~g~~l  263 (300)
T TIGR03866       240 EVLDYLL-VGQRVWQLAFTPDEKYL  263 (300)
T ss_pred             cEEEEEE-eCCCcceEEECCCCCEE
Confidence            6655543 44579999999999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=1.5e-22  Score=150.69  Aligned_cols=232  Identities=15%  Similarity=0.211  Sum_probs=179.3

Q ss_pred             CCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         6 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .|-+....+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..  ++|+++.|.+  ++.++++++
T Consensus       163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~--~~~~~iAas  238 (459)
T KOG0288|consen  163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDS--DNKHVIAAS  238 (459)
T ss_pred             cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC--CCcceeeecC--CCceEEeec
Confidence            3446788899999999999999998899999999999999987665  667777776  6699999999  889999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~  160 (270)
                      .|+.+++|++...+...    ++.+|....+...+..... .......-....||+....+.+..+.+..-  ++.+  +
T Consensus       239 ~d~~~r~Wnvd~~r~~~----TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  239 NDKNLRLWNVDSLRLRH----TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I  312 (459)
T ss_pred             CCCceeeeeccchhhhh----hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence            99999999999887644    6666666655544433333 222233334556899888888877776655  5555  2


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                       . .+++|..|+.|++||.++..+......             .+.+.++. .+++   |. .|.+++.|.++.+.|+++
T Consensus       313 -~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~-------------gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  313 -S-DVISGHFDKKVRFWDIRSADKTRSVPL-------------GGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             -e-eeeecccccceEEEeccCCceeeEeec-------------CcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence             2 334899999999999999999998882             34678887 7773   44 788889999999999998


Q ss_pred             CCcceeeeecc----CCCeeEEEeecCCCcee
Q 024245          241 PGIPLTAMKVH----LEPGLECSMWRNPITMS  268 (270)
Q Consensus       241 ~~~~~~~~~~~----~~~v~~~~~s~~g~~ls  268 (270)
                       .+....+...    ....+.+.|||++.|+.
T Consensus       373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             -ccEEEEeeccccccccccceeEECCCCceee
Confidence             6666666532    23578899999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=4.4e-21  Score=152.93  Aligned_cols=223  Identities=14%  Similarity=0.250  Sum_probs=171.0

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ++.||+..|+++++|.+...++||+. +.|++|+..+.++++++...    .+.+..|.|  .++++++|...|.+.+||
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~----y~l~~~Fvp--gd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG----YILASKFVP--GDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc----cEEEEEecC--CCceEEEeccCCceEEEE
Confidence            46689999999999999888888775 57999999999999998754    489999999  889999999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCce----e-e-------eccCCCCC---eEe
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGET----V-D-------TDSLCDSK---DDV  156 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~-~-------~~~~~~~~---~~~  156 (270)
                      +.+.....    .++.+......++......+.. ......+.+|+..--..    . +       .+++-...   +.+
T Consensus       441 laS~~l~E----ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~  516 (888)
T KOG0306|consen  441 LASASLVE----TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV  516 (888)
T ss_pred             eehhhhhh----hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence            99887654    5555555554444444333322 22234455565532111    1 0       11111222   889


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      ||||+++.  .+=-|.+++||-+.+-+....+.        ||..    ++.++. .+|+++    +++|||.|.+|++|
T Consensus       517 Spdgk~La--VsLLdnTVkVyflDtlKFflsLY--------GHkL----PV~smD-IS~DSk----livTgSADKnVKiW  577 (888)
T KOG0306|consen  517 SPDGKLLA--VSLLDNTVKVYFLDTLKFFLSLY--------GHKL----PVLSMD-ISPDSK----LIVTGSADKNVKIW  577 (888)
T ss_pred             cCCCcEEE--EEeccCeEEEEEecceeeeeeec--------cccc----ceeEEe-ccCCcC----eEEeccCCCceEEe
Confidence            99998654  35579999999999999888888        8854    678888 999644    99999999999999


Q ss_pred             EcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          237 DIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      -+.- |.|-..+-+|.+.|.++.|-|+...
T Consensus       578 GLdF-GDCHKS~fAHdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  578 GLDF-GDCHKSFFAHDDSVMSVQFLPKTHL  606 (888)
T ss_pred             cccc-chhhhhhhcccCceeEEEEccccee
Confidence            9998 8999999999999999999996543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=140.69  Aligned_cols=233  Identities=15%  Similarity=0.136  Sum_probs=154.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++-.++. |.. ..|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|.  .+|.+++|++  +|.+|+|+|.|..|
T Consensus        16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~--dgr~LltsS~D~si   89 (405)
T KOG1273|consen   16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSR--DGRKLLTSSRDWSI   89 (405)
T ss_pred             hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc--cceeEEEecC--CCCEeeeecCCcee
Confidence            3445554 333 7899999999999999999999999999988888899999  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCcee--eeccCCCCC-----eEecCCCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--DTDSLCDSK-----DDVPAEGP  161 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~s~~~~  161 (270)
                      .+||+..+.+..+..+   ..+...+.+.+................+.++......  ...-.+..+     ..|.+.|+
T Consensus        90 ~lwDl~~gs~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK  166 (405)
T ss_pred             EEEeccCCCceeEEEc---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence            9999999976542111   1122223233322222222222233333344332111  111111111     34788898


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      +++  +|...|.+.++|..+.+++..++-        .   ....+-.+. ++-   .|+ +|+.-+.|..|+.|+++..
T Consensus       167 yIi--tGtsKGkllv~~a~t~e~vas~ri--------t---s~~~IK~I~-~s~---~g~-~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  167 YII--TGTSKGKLLVYDAETLECVASFRI--------T---SVQAIKQII-VSR---KGR-FLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             EEE--EecCcceEEEEecchheeeeeeee--------c---hheeeeEEE-Eec---cCc-EEEEecCCceEEEEehhhh
Confidence            776  566789999999999999888872        1   112344444 554   456 9999999999999998731


Q ss_pred             ------Cc--ceeeeec--cCCCeeEEEeecCCCcee
Q 024245          242 ------GI--PLTAMKV--HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ------~~--~~~~~~~--~~~~v~~~~~s~~g~~ls  268 (270)
                            ++  +.+.+..  ....=.+++||.||.|+.
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~  265 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC  265 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence                  11  1222221  122335789999999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=9.6e-22  Score=156.23  Aligned_cols=232  Identities=13%  Similarity=0.139  Sum_probs=172.6

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd   92 (270)
                      ..+.+..+++++.+|+|++||+|..-|+++||++.+-+....+..|.  ..|.|+.|+... ..++|++++.|..|++||
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe--sEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE--SEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc--ceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            34456789999999999999999999999999999988888888998  559999998621 235788999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccC------CCCC---eEecCCCC
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSL------CDSK---DDVPAEGP  161 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~---~~~s~~~~  161 (270)
                      +...-   .++.++.++...+..+.+.......-....+.+..  ++......-...+.      ++..   ++..|..+
T Consensus       533 v~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  533 VKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             ccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence            97654   33456777776666666665543332222222222  22222111111111      1222   78888887


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      +++  +++.|..|+|||+.+++..+.|+.       .|.  ..+....+. ..|.+   - ||++...|.++.++|.-+ 
T Consensus       610 ~v~--t~cQDrnirif~i~sgKq~k~FKg-------s~~--~eG~lIKv~-lDPSg---i-Y~atScsdktl~~~Df~s-  672 (1080)
T KOG1408|consen  610 LVV--TVCQDRNIRIFDIESGKQVKSFKG-------SRD--HEGDLIKVI-LDPSG---I-YLATSCSDKTLCFVDFVS-  672 (1080)
T ss_pred             eEE--EEecccceEEEeccccceeeeecc-------ccc--CCCceEEEE-ECCCc---c-EEEEeecCCceEEEEecc-
Confidence            655  566799999999999999999994       232  245566666 88864   3 999999999999999999 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCce
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++++..+.||+..|+.+.|.+|-+.|
T Consensus       673 gEcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  673 GECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             chhhhhhcCcchheeeeeecccchhh
Confidence            99999999999999999999997664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=4.7e-21  Score=137.56  Aligned_cols=184  Identities=18%  Similarity=0.280  Sum_probs=131.3

Q ss_pred             ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC-CceeE-EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        15 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      ...++.|.+|+||| ...+++++|.||+||+|+++. +..+. ....|.  ++|.+++|+.  +|..+++|+.|+.+++|
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEEE
Confidence            34578999999999 556777999999999999986 33332 333455  7799999999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      |+.+++..     .+..+......+.                                      |-+...+-++++|+.|
T Consensus       100 DL~S~Q~~-----~v~~Hd~pvkt~~--------------------------------------wv~~~~~~cl~TGSWD  136 (347)
T KOG0647|consen  100 DLASGQVS-----QVAAHDAPVKTCH--------------------------------------WVPGMNYQCLVTGSWD  136 (347)
T ss_pred             EccCCCee-----eeeecccceeEEE--------------------------------------EecCCCcceeEecccc
Confidence            99998532     3333333333222                                      2222233345589999


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-  250 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-  250 (270)
                      .+|+.||+|...++.++..             ...++++....|       +++.+..++.|.+|+++++......+.. 
T Consensus       137 KTlKfWD~R~~~pv~t~~L-------------PeRvYa~Dv~~p-------m~vVata~r~i~vynL~n~~te~k~~~Sp  196 (347)
T KOG0647|consen  137 KTLKFWDTRSSNPVATLQL-------------PERVYAADVLYP-------MAVVATAERHIAVYNLENPPTEFKRIESP  196 (347)
T ss_pred             cceeecccCCCCeeeeeec-------------cceeeehhccCc-------eeEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence            9999999999999998884             234555442333       8899999999999999875443333321 


Q ss_pred             cCCCeeEEEeecCCC
Q 024245          251 HLEPGLECSMWRNPI  265 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~  265 (270)
                      -+-.+.+|+..+|..
T Consensus       197 Lk~Q~R~va~f~d~~  211 (347)
T KOG0647|consen  197 LKWQTRCVACFQDKD  211 (347)
T ss_pred             ccceeeEEEEEecCC
Confidence            223567777766543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.9e-21  Score=151.42  Aligned_cols=240  Identities=18%  Similarity=0.184  Sum_probs=159.4

Q ss_pred             CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ||.|-.+-..++||++.|++++..|.|.+|++|+.||+|+||.+.++.|++++...   +.|.+|+|+|..+-..|+++-
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe
Confidence            57777788889999999999999999999999999999999999999999999876   559999999943322344443


Q ss_pred             CCCcEEEEEccCCccCC-----CCccceec------------------cc----------ceEEEEeeccCCccce--ec
Q 024245           84 RDGTVKCWDIENGGLSS-----NPSLTIKT------------------NS----------YHFCKLSLVKEPYANA--KQ  128 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~-----~~~~~~~~------------------~~----------~~~~~~~~~~~~~~~~--~~  128 (270)
                       +..+.+-+..-|..+.     .++...+.                  ..          .....+..........  ..
T Consensus       463 -~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  463 -GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             -cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence             3446665543331110     00111100                  00          0011111111111111  11


Q ss_pred             CCC--CceEEEeccCceeee--ccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC
Q 024245          129 ANE--PKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (270)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~--~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~  203 (270)
                      .++  .+.+.++........  ...|+.. +.|+|...++++++   ...|+|||+..++.++++..            .
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------g  606 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------G  606 (733)
T ss_pred             CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------C
Confidence            111  122233333322211  2222333 89999999998754   37899999998888887773            2


Q ss_pred             CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .-.+..++ .+|.   |. -|+.|+.|+.+..+|+....++.+++.-|...+++++|++.-.++
T Consensus       607 ~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf  665 (733)
T KOG0650|consen  607 SKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF  665 (733)
T ss_pred             Ceeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence            33566776 8884   44 799999999999999998788999999999999999998765444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=8.6e-22  Score=138.89  Aligned_cols=250  Identities=25%  Similarity=0.332  Sum_probs=168.6

Q ss_pred             CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +.||.|...|++|.+.|+++.|-.+++ |.+|...|.|++|++.+.+....+..+.. ..|+.+...|  + ..+.+-+.
T Consensus         1 ~~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR   75 (323)
T KOG0322|consen    1 MVPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR   75 (323)
T ss_pred             CCCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence            357799999999999999999988775 88999999999999999888888874433 6689999888  6 78999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc--ee--cCCCCceE--EEeccCceeeec---cCCCCC--
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AK--QANEPKDC--YEREVGETVDTD---SLCDSK--  153 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~--~~~~~~~~~~~~---~~~~~~--  153 (270)
                      |..+.+|++..+..+.  +..+..+...+|.++....+...  ..  -..+....  -|......+...   ..+...  
T Consensus        76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            9999999998766544  44455666777777766544332  11  11111111  111111111110   111111  


Q ss_pred             eEec---CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--CCCCCCcccC--------------------------
Q 024245          154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--CGGSPNFSSK--------------------------  202 (270)
Q Consensus       154 ~~~s---~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~h~~~--------------------------  202 (270)
                      +++.   .++.++++.+|.++|.+.+||+.++..+..++...  ......|..+                          
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            4554   45778888899999999999999874433332100  0000001000                          


Q ss_pred             ----------------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          203 ----------------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       203 ----------------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                                      .+.-+..+. ..|   |++ .+||++-|+.|+||..++ .+++..++.|++.|++++|+|+..+
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvr-IRp---D~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVR-IRP---DGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             eccccCcccccceEEecCCCccceE-Ecc---CCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence                            000112222 444   565 999999999999999999 9999999999999999999999655


Q ss_pred             e
Q 024245          267 M  267 (270)
Q Consensus       267 l  267 (270)
                      |
T Consensus       308 m  308 (323)
T KOG0322|consen  308 M  308 (323)
T ss_pred             h
Confidence            4

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=7.9e-22  Score=145.49  Aligned_cols=172  Identities=17%  Similarity=0.332  Sum_probs=130.1

Q ss_pred             CCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCcee---EEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .+|+.++.+|...=++++||| ....|++|.--+.|++|...++...   ..+.+|.  ..|..++|+|.. .+.|+|||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~SVEDLqWSptE-~~vfaScS  277 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--KSVEDLQWSPTE-DGVFASCS  277 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccc--cchhhhccCCcc-CceEEeee
Confidence            478999999999999999999 2236888988899999999887543   2455677  679999999963 47899999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      -||+|+|||++.+....  ....+.+...+..                                      +.|+..-. +
T Consensus       278 ~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~-l  316 (440)
T KOG0302|consen  278 CDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP-L  316 (440)
T ss_pred             cCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc-e
Confidence            99999999999884322  2222333322222                                      33555555 4


Q ss_pred             EEEecCCCceEEEEeCCC---cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          164 MAVAGEQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      | ++|++||+++|||+|.   ++++..|+        -|    ...++++. |+|.+  .. .|++++.|..|.+||+..
T Consensus       317 L-asG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e--~s-~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  317 L-ASGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHE--DS-VIAASGEDNQITIWDLSV  379 (440)
T ss_pred             e-eecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-ecccc--Cc-eEEeccCCCcEEEEEeec
Confidence            4 5899999999999985   45677777        45    55788998 99973  33 899999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=2.7e-21  Score=145.86  Aligned_cols=235  Identities=19%  Similarity=0.270  Sum_probs=162.3

Q ss_pred             ccccccccccEEEEEEeCCC--CEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ....+-+.+.|++++|+|..  +++|+|+.-|+|-+||+...    ..+..+..|.  .+|.+|.|+|. +...+++.|.
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy  255 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY  255 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence            34456688999999999943  58999999999999999532    2344455566  77999999996 4478999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      ||+|++-|++++....  +.........++.+.+........ ...-+....||.+....-...+.-|..    ++++|.
T Consensus       256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            9999999999875432  444444444454444433332222 222234577888888776666666655    999999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeee--eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      .+++++ +++.|++.+|||+|.-.....  +.          ..+....|.+.. |+|+  +|  .|+|.+.|..|+|||
T Consensus       334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~ls----------t~~HrrsV~sAy-FSPs--~g--tl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  334 CPWFLA-TASLDQTAKIWDLRQLRGKASPFLS----------TLPHRRSVNSAY-FSPS--GG--TLLTTCQDNEIRVFD  397 (498)
T ss_pred             Cchhee-ecccCcceeeeehhhhcCCCCccee----------cccccceeeeeE-EcCC--CC--ceEeeccCCceEEee
Confidence            998887 677899999999986543332  11          112345677776 9997  44  599999999999999


Q ss_pred             cC---CCCcceeeeeccCC------CeeEEEeecCCCce
Q 024245          238 IR---NPGIPLTAMKVHLE------PGLECSMWRNPITM  267 (270)
Q Consensus       238 ~~---~~~~~~~~~~~~~~------~v~~~~~s~~g~~l  267 (270)
                      ..   ....+..++. |..      .....+|.||..+|
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li  435 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLI  435 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhheeCCCccEE
Confidence            84   2245555554 331      23456788876665

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.1e-20  Score=146.40  Aligned_cols=228  Identities=16%  Similarity=0.239  Sum_probs=164.1

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+|.+|+|+.+.+.||.+-.||.|.+|++..+- +...+.++.. ..|.+++|.+  + ..|++.+.+|.|..||+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e--~-~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE--G-GRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc--C-CeEEeecCCceEEEEecccC
Confidence            4789999999999999999999999999998753 4445555544 7799999996  5 88999999999999999998


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCC-C----eEecCCCCeEEEEecCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K----DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~s~~~~~~~~~~~~~  170 (270)
                      +...    .........-.++........... ..+....++...++.........+ .    ++|+|++..++  +|+.
T Consensus       101 k~~~----~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~Gs~  174 (691)
T KOG2048|consen  101 KQKY----NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--GGSI  174 (691)
T ss_pred             ceeE----EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--eccc
Confidence            6533    444444444334443333333332 233333344455544443333333 2    88999997665  6889


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      ||.|++||..++..++....+.    .+-.......+|++. |-.   ++  .|++|.+-|+|.+||... +..++.+..
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lr---d~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~  243 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLR---DS--TIASGDSAGTVTFWDSIF-GTLIQSHSC  243 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eee---cC--cEEEecCCceEEEEcccC-cchhhhhhh
Confidence            9999999999998776333210    022222456889998 664   33  799999999999999998 899999999


Q ss_pred             cCCCeeEEEeecCCCc
Q 024245          251 HLEPGLECSMWRNPIT  266 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~~  266 (270)
                      |...|.+++.++++.+
T Consensus       244 h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  244 HDADVLALAVADNEDR  259 (691)
T ss_pred             hhcceeEEEEcCCCCe
Confidence            9999999999998544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.1e-20  Score=136.07  Aligned_cols=211  Identities=16%  Similarity=0.220  Sum_probs=143.4

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      .+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++.    .+....+.|.  +.|..+.|.+..-|+.+++++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--GSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--CcEEEEEecCccccceEEEEecCCceee
Confidence            479999999999999999999999999999997543    5667778888  6699999987656899999999999999


Q ss_pred             EEccCCccCCCCccceecccceE-EEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      |.=....        .+.+...- ....+..          +...+.|                +.|.|....+.+++++
T Consensus        88 WEE~~~~--------~~~~~~~Wv~~ttl~D----------srssV~D----------------V~FaP~hlGLklA~~~  133 (361)
T KOG2445|consen   88 WEEQEKS--------EEAHGRRWVRRTTLVD----------SRSSVTD----------------VKFAPKHLGLKLAAAS  133 (361)
T ss_pred             eeecccc--------cccccceeEEEEEeec----------CCcceeE----------------EEecchhcceEEEEec
Confidence            9753211        11111110 0000000          0000000                6688877667777888


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCC-CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-----CcEEEEEcCCCC-
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCG-GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPG-  242 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d-----g~i~vwd~~~~~-  242 (270)
                      .||.+|||+...-..+........- .+..........+.++. |+|..-..+ +||.|+.+     +.++||.....+ 
T Consensus       134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~~~p-~iAvgs~e~a~~~~~~~Iye~~e~~r  211 (361)
T KOG2445|consen  134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRMHEP-LIAVGSDEDAPHLNKVKIYEYNENGR  211 (361)
T ss_pred             cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccccCc-eEEEEcccCCccccceEEEEecCCcc
Confidence            8999999998654433333221000 00011112345677787 998754445 88888766     589999877644 


Q ss_pred             --cceeeeeccCCCeeEEEeecC
Q 024245          243 --IPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       243 --~~~~~~~~~~~~v~~~~~s~~  263 (270)
                        ..+.++.+|..+|++|+|.|+
T Consensus       212 Kw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  212 KWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             eeeeehhcCCCCCcceeeeeccc
Confidence              356677899999999999996

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=153.59  Aligned_cols=196  Identities=16%  Similarity=0.207  Sum_probs=150.5

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .+.-.+-++++++|+.+|+++|.||.|-.|++-++........+.+|.  ++|.++.|+|  ++++|++.+-||.|++||
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl~l~~~p--~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVLQLSYDP--KGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--CceeeeeEcC--CCCEEEEEecCceEEEEE
Confidence            344466789999999999999999999999999999999999999999  7799999999  999999999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      +.++.+..    ++...........  .                      .+      -..++|+|+|..+++. + .|+
T Consensus       167 ~~~~~~~~----tl~~v~k~n~~~~--s----------------------~i------~~~~aW~Pk~g~la~~-~-~d~  210 (933)
T KOG1274|consen  167 LQDGILSK----TLTGVDKDNEFIL--S----------------------RI------CTRLAWHPKGGTLAVP-P-VDN  210 (933)
T ss_pred             cccchhhh----hcccCCccccccc--c----------------------ce------eeeeeecCCCCeEEee-c-cCC
Confidence            99886644    2222111110000  0                      00      0006799998777764 3 379


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      .|++|+....+....+..+       +   .......++ |+|.   |. |||+++.||.|.|||+++ ...    ....
T Consensus       211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~  270 (933)
T KOG1274|consen  211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK  270 (933)
T ss_pred             eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence            9999999999988888752       2   222356666 9994   66 999999999999999997 222    2234


Q ss_pred             CCeeEEEeecCCCcee
Q 024245          253 EPGLECSMWRNPITMS  268 (270)
Q Consensus       253 ~~v~~~~~s~~g~~ls  268 (270)
                      ..|.+++|-|++..|+
T Consensus       271 ~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  271 RAVCCEAWKPNANAIT  286 (933)
T ss_pred             ceeEEEecCCCCCeeE
Confidence            6899999999987765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=4.1e-21  Score=146.87  Aligned_cols=223  Identities=17%  Similarity=0.199  Sum_probs=169.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .|.+-|.++..|...+++++|+. |.|+|||+..   ..++..+........|.++...|  ||+.|++|++-.++.|||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence            48888999999999999999986 6799999964   24555555544447799999999  999999999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      +......    ...+-......+..++.+++..   .....+.+.+||+.+...++ .+.||..    +.+++||..+. 
T Consensus       494 LAapTpr----ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklW-  567 (705)
T KOG0639|consen  494 LAAPTPR----IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLW-  567 (705)
T ss_pred             ccCCCcc----hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee-cccCCCCCceeEEecCCCceee-
Confidence            9865321    1111112222233344444332   34456778899998876655 7888877    89999998887 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +|+-|++||-||+++++.+.+..             ....++++. +.|.+   . +|+.|-+++.+.|-....  ...
T Consensus       568 -TGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg-~cP~~---d-WlavGMens~vevlh~sk--p~k  626 (705)
T KOG0639|consen  568 -TGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLG-YCPTG---D-WLAVGMENSNVEVLHTSK--PEK  626 (705)
T ss_pred             -cCCCccceeehhhhhhhhhhhhh-------------hhhhheecc-cCCCc---c-ceeeecccCcEEEEecCC--ccc
Confidence             78899999999999998776655             456788888 99964   4 999999999988877664  445


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..+..|.+.|.++.|.+-|+++.
T Consensus       627 yqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             eeecccccEEEEEEecccCceee
Confidence            66677899999999999998753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=1.1e-20  Score=149.25  Aligned_cols=219  Identities=14%  Similarity=0.207  Sum_probs=172.1

Q ss_pred             cccccccccEEE-EEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           12 AVLRGHRASVTD-VCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        12 ~~~~~h~~~v~~-~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+.+|.+-|.. ++|-+ ++-.+++|+.|.+|.+|......+...+.+|.  ..|.+++...  ++. ++|||.|.+++
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~--snVC~ls~~~--~~~-~iSgSWD~Tak  125 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK--SNVCSLSIGE--DGT-LISGSWDSTAK  125 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc--cceeeeecCC--cCc-eEecccccceE
Confidence            457778888877 88886 55579999999999999999999999999999  5599999877  645 99999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      +|....-.      ..+.+|.............   ...+++.+..+.+..+.....++.+|..    +++-+++.  ++
T Consensus       126 vW~~~~l~------~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~--fl  194 (745)
T KOG0301|consen  126 VWRIGELV------YSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH--FL  194 (745)
T ss_pred             Eecchhhh------cccCCcchheeeeeecCCC---cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC--eE
Confidence            99876432      2455666555433333332   5566777777778788888889999998    78888875  33


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +++.||.|++|++ +++++.++.        ||.    ..++++. ..++   ++ .++++++|+++++|+..   ++.
T Consensus       195 -ScsNDg~Ir~w~~-~ge~l~~~~--------ght----n~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~~  252 (745)
T KOG0301|consen  195 -SCSNDGSIRLWDL-DGEVLLEMH--------GHT----NFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---ECV  252 (745)
T ss_pred             -eecCCceEEEEec-cCceeeeee--------ccc----eEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ceE
Confidence             5677999999999 699999988        784    4777776 5543   23 89999999999999976   677


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.+.-....|+++.+-++|..+.
T Consensus       253 q~I~lPttsiWsa~~L~NgDIvv  275 (745)
T KOG0301|consen  253 QVITLPTTSIWSAKVLLNGDIVV  275 (745)
T ss_pred             EEEecCccceEEEEEeeCCCEEE
Confidence            77776667899999998887654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=8.6e-21  Score=149.93  Aligned_cols=224  Identities=17%  Similarity=0.240  Sum_probs=169.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--EeecCCCcceEE-EEEeeCCCCCEEEEEeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVS-VATGPSIGLNKVISQGRD   85 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d   85 (270)
                      ++.+.+.||...|..+++.+.. .++++|+||++++|+-..++.+.+  +.++.  +-|.. +++.+. ++..+++|+.|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~--g~i~~~i~y~e~-~~~~l~~g~~D   80 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPK--GFIANSICYAES-DKGRLVVGGMD   80 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCc--ceeeccceeccc-cCcceEeeccc
Confidence            5678899999999999987654 899999999999999876665543  44444  44555 777762 55679999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      ++|.+|...+.    .|+..+.+|....|+++......   +..++.+....+.........+.+|+.    +..-|++.
T Consensus        81 ~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~  153 (745)
T KOG0301|consen   81 TTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENT  153 (745)
T ss_pred             ceEEEEecCCC----CchhhhhccccceeeeecCCcCc---eEecccccceEEecchhhhcccCCcchheeeeeecCCCc
Confidence            99999999887    56779999999999888665544   334444444344444444445889988    55556663


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                        ++ +|+.|.+|++|.-  ++.+++|.        ||.+    .+..++ +-|+   +  -+++++.||.|++|++.  
T Consensus       154 --~v-TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~---~--~flScsNDg~Ir~w~~~--  208 (745)
T KOG0301|consen  154 --YV-TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDD---S--HFLSCSNDGSIRLWDLD--  208 (745)
T ss_pred             --EE-eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecC---C--CeEeecCCceEEEEecc--
Confidence              33 7888999999986  78888999        8855    566665 7663   2  69999999999999994  


Q ss_pred             CcceeeeeccCCCeeEEEe-ecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSM-WRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~-s~~g~~ls  268 (270)
                      ++++..+.+|+.-|.+++. .+++..+|
T Consensus       209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  209 GEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             CceeeeeeccceEEEEEEecCCCCeEEE
Confidence            8999999999999999994 44555554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.9e-21  Score=144.50  Aligned_cols=204  Identities=16%  Similarity=0.185  Sum_probs=147.8

Q ss_pred             ccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      .+|+++|.+|+|+.. ...|||||.|.+|++||+.++++..++..|.  ..|.+++|+|. ....|++|+.|++|.+.|.
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPY-EPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCC-CceEEEeccccceEEeeec
Confidence            479999999999984 4589999999999999999999999999888  55999999996 5589999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEe
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~  167 (270)
                      +......   ..++. ......+.+....  ........+....+|++......+.+..|..    +++++.-+.+++ +
T Consensus       317 R~~~~s~---~~wk~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t  391 (463)
T KOG0270|consen  317 RDPSNSG---KEWKF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-T  391 (463)
T ss_pred             cCccccC---ceEEe-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-e
Confidence            8532211   11111 1112222222222  2233444567777899988888888888888    889988888886 5


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ++.|+.|++|++..........         |.- ..+...|.+ +.|+   -...++.|+..+.++|||+.+
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~---------~~~-~~~rl~c~~-~~~~---~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKE---------HSF-KLGRLHCFA-LDPD---VAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ccccceEEEEeecCCCCccccc---------ccc-cccceeecc-cCCC---cceEEEecCccceEEEeeccc
Confidence            7779999999987555432222         211 122233333 6664   223899999999999999988

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=1.5e-20  Score=144.03  Aligned_cols=228  Identities=11%  Similarity=0.107  Sum_probs=154.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE------------EeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS------------SWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ...|++++|++.|..|++.+.....+|+|-...+....            -++|.  ..+++.+|+|. +.+.++|++.|
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~-~k~~FlT~s~D  290 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPD-NKEEFLTCSYD  290 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccC-cccceEEecCC
Confidence            34799999999999888777778899999764333332            24666  66999999996 34789999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee---cCCCCceEEEeccCc--eeeeccCCCCC------e
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK---QANEPKDCYEREVGE--TVDTDSLCDSK------D  154 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~------~  154 (270)
                      |++++||++..+.....+.........+...++.+++....+   ...+.+.+|+.....  .......+|..      +
T Consensus       291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi  370 (641)
T KOG0772|consen  291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI  370 (641)
T ss_pred             CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence            999999998765433222222222333333344444444433   345667778764322  22233344444      9


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-----
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-----  228 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-----  228 (270)
                      .||++|++|+  +-+.|+++++||++..+ ++....        +-....  .-+.++ |+|+.   + +|++|.     
T Consensus       371 ~FS~dg~~Ll--SRg~D~tLKvWDLrq~kkpL~~~t--------gL~t~~--~~tdc~-FSPd~---k-li~TGtS~~~~  433 (641)
T KOG0772|consen  371 SFSYDGNYLL--SRGFDDTLKVWDLRQFKKPLNVRT--------GLPTPF--PGTDCC-FSPDD---K-LILTGTSAPNG  433 (641)
T ss_pred             Eeccccchhh--hccCCCceeeeeccccccchhhhc--------CCCccC--CCCccc-cCCCc---e-EEEecccccCC
Confidence            9999998776  67789999999999654 555544        222211  223344 99963   3 888885     


Q ss_pred             -CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          229 -EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       229 -~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                       ..|++++||..+ -..++.+......|..+.|+|.=..
T Consensus       434 ~~~g~L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  434 MTAGTLFFFDRMT-LDTVYKIDISTASVVRCLWHPKLNQ  471 (641)
T ss_pred             CCCceEEEEeccc-eeeEEEecCCCceEEEEeecchhhh
Confidence             357899999998 7788888777888999999995443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=6e-21  Score=149.84  Aligned_cols=175  Identities=19%  Similarity=0.269  Sum_probs=139.6

Q ss_pred             CcccccccccccEEEEEE-eCCCCEEEEecCCCcEEEEeCCCC--ceeEEE--------e-ecCCCcceEEEEEeeCCCC
Q 024245            9 DPVAVLRGHRASVTDVCF-HQTKPILFAGTTGGELRIWDTVQH--RTVSSS--------W-VHSAAHGIVSVATGPSIGL   76 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~--------~-~~~~~~~v~~~~~~~~~~~   76 (270)
                      -+..+++.|++.|.|+++ -++..++|+|+-|+.|.+||++++  +.+..+        . ++.  ++|++++.++  .|
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k--~siYSLA~N~--t~  183 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK--DSIYSLAMNQ--TG  183 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc--cceeeeecCC--cc
Confidence            367889999999999999 778889999999999999999977  233222        2 344  7799999999  88


Q ss_pred             CEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEe
Q 024245           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (270)
Q Consensus        77 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (270)
                      ..|++|+..+.+++||.++.+...    .+.++......                                      +..
T Consensus       184 t~ivsGgtek~lr~wDprt~~kim----kLrGHTdNVr~--------------------------------------ll~  221 (735)
T KOG0308|consen  184 TIIVSGGTEKDLRLWDPRTCKKIM----KLRGHTDNVRV--------------------------------------LLV  221 (735)
T ss_pred             eEEEecCcccceEEecccccccee----eeeccccceEE--------------------------------------EEE
Confidence            899999999999999999986543    45555555442                                      336


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      ++||.+++  +++.||+|++||++..+++.++.        .|.    ..+|++. .+|+-.    .+.+|+.||.|..=
T Consensus       222 ~dDGt~~l--s~sSDgtIrlWdLgqQrCl~T~~--------vH~----e~VWaL~-~~~sf~----~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  222 NDDGTRLL--SASSDGTIRLWDLGQQRCLATYI--------VHK----EGVWALQ-SSPSFT----HVYSGGRDGNIYRT  282 (735)
T ss_pred             cCCCCeEe--ecCCCceEEeeeccccceeeeEE--------ecc----CceEEEe-eCCCcc----eEEecCCCCcEEec
Confidence            78898776  67779999999999999999998        673    3488887 777533    89999999999999


Q ss_pred             EcCCCCcceeee
Q 024245          237 DIRNPGIPLTAM  248 (270)
Q Consensus       237 d~~~~~~~~~~~  248 (270)
                      |++++.+....+
T Consensus       283 dl~n~~~~tlic  294 (735)
T KOG0308|consen  283 DLRNPAKSTLIC  294 (735)
T ss_pred             ccCCchhheEee
Confidence            999854443333

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=5.8e-20  Score=138.80  Aligned_cols=228  Identities=17%  Similarity=0.232  Sum_probs=164.5

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-E-----------------eecCCCcceEEEEEee
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP   72 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~   72 (270)
                      .+.+..|.-+|.+++++|++++.++++.|++|.-|++.+++.... +                 ..|.  ..+.+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence            567788999999999999999999999999999999988763310 0                 1344  5599999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCC
Q 024245           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  151 (270)
                        |+.+|++|+.|..|.||+.++.+.+.    .+.++...+..+.+...+...+ ......+.+|++.....+. ++.+|
T Consensus       213 --Dgkylatgg~d~~v~Iw~~~t~ehv~----~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-tlyGH  285 (479)
T KOG0299|consen  213 --DGKYLATGGRDRHVQIWDCDTLEHVK----VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-TLYGH  285 (479)
T ss_pred             --CCcEEEecCCCceEEEecCcccchhh----cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-HHhCC
Confidence              99999999999999999999986544    6677776666555554443333 3334456677776654443 56677


Q ss_pred             CC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       152 ~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                      +.  +.++.-+..-+++.|..|+++++|++.....+ .+.        +|    .+.+-+++ |-.    .. .+++|+.
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr--------g~----~~sidcv~-~In----~~-HfvsGSd  346 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR--------GG----EGSIDCVA-FIN----DE-HFVSGSD  346 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEecccccee-eee--------CC----CCCeeeEE-Eec----cc-ceeeccC
Confidence            76  55555444446677889999999999643332 344        34    33455555 653    22 7999999


Q ss_pred             CCcEEEEEcCCCCcceeeee-ccC-----------CCeeEEEeecCCCce
Q 024245          230 DGSILVWDIRNPGIPLTAMK-VHL-----------EPGLECSMWRNPITM  267 (270)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~-~~~-----------~~v~~~~~s~~g~~l  267 (270)
                      ||.|.+|++.. .+|+.+.. .|.           .+|++++..|...++
T Consensus       347 nG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~  395 (479)
T KOG0299|consen  347 NGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLL  395 (479)
T ss_pred             CceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceE
Confidence            99999999998 77776654 221           278888888866554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.87  E-value=8.6e-21  Score=139.42  Aligned_cols=212  Identities=11%  Similarity=0.110  Sum_probs=149.9

Q ss_pred             CCCCCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      |++-|.. ...+.+.||..++++-.|.|+|+.++++..||+|++||+++++++..+....+ ....++.++.  .+..++
T Consensus       174 mw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~--~~~~~~  249 (399)
T KOG0296|consen  174 MWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNL--AGSTLT  249 (399)
T ss_pred             EEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc-CcCCcccccc--ccceeE
Confidence            5555554 67889999999999999999999999999999999999999999988875543 5578888888  888999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCc-----cceecccceEEEE-eeccCCccceec---CCCCceEEEeccCceeeeccCCC
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPS-----LTIKTNSYHFCKL-SLVKEPYANAKQ---ANEPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  151 (270)
                      +|+.++.+++-+..+++.+.-..     ... .......++ +..........+   ..+...+||+..... + ....|
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~-~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R-~~c~h  326 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKP-SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-R-HICEH  326 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccc-cchhhhhhhhhcccccccchhhcccccceEEEEecccchh-h-eeccC
Confidence            99999999998888876543000     000 011111111 111222222223   344455666654322 1 22223


Q ss_pred             CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      +.    +.|-+ ..++++  ++.+|.|+.||.|+|+++.++.        ||..    .+.+++ ++|+   ++ +++|+
T Consensus       327 e~~V~~l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~--------GH~~----~Il~f~-ls~~---~~-~vvT~  386 (399)
T KOG0296|consen  327 EDGVTKLKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYT--------GHQM----GILDFA-LSPQ---KR-LVVTV  386 (399)
T ss_pred             CCceEEEEEcC-cchhee--eccCceEEeeeccccceEEEEe--------cCch----heeEEE-EcCC---Cc-EEEEe
Confidence            33    67777 455653  4558999999999999999999        8854    567776 8884   44 99999


Q ss_pred             cCCCcEEEEEcC
Q 024245          228 YEDGSILVWDIR  239 (270)
Q Consensus       228 ~~dg~i~vwd~~  239 (270)
                      |.|++.+||++.
T Consensus       387 s~D~~a~VF~v~  398 (399)
T KOG0296|consen  387 SDDNTALVFEVP  398 (399)
T ss_pred             cCCCeEEEEecC
Confidence            999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=3.8e-21  Score=141.26  Aligned_cols=226  Identities=12%  Similarity=0.184  Sum_probs=165.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++..+++.|.+.|..+++..  ..+++++.|.+|+.|.++. .+.+++.+.   ..+..+.-+.  .++.++|++++  |
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe~--i  169 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGEQ--I  169 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCce--e
Confidence            57889999999999999987  6788999999999999874 577777665   4577887777  66889999875  9


Q ss_pred             EEEEccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~  164 (270)
                      .|||.....    |+..+.-...  ..+.+.+................++|.+....+......-..  ++|+|.+-.+ 
T Consensus       170 ~IWD~~R~~----Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF-  244 (433)
T KOG0268|consen  170 DIWDEQRDN----PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNF-  244 (433)
T ss_pred             eecccccCC----ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccce-
Confidence            999997663    3334444333  444444444444444455666778899988877765544444  9999965433 


Q ss_pred             EEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          165 AVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                       +++++|..++.||++..+ ++..+.        +|    ...++++. |+|.   |+ -+++||.|.+|+||.++. +.
T Consensus       245 -~~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~  305 (433)
T KOG0268|consen  245 -VAANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GH  305 (433)
T ss_pred             -eeccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Cc
Confidence             368899999999998654 555555        56    45789998 9996   44 899999999999999987 33


Q ss_pred             ceeee-eccCCCeeEEEeecCCCcee
Q 024245          244 PLTAM-KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~-~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .-..+ .-.-..|.++.||-|.+||-
T Consensus       306 SRdiYhtkRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  306 SRDIYHTKRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             chhhhhHhhhheeeEEEEeccccEEE
Confidence            22222 11235799999999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=6.8e-20  Score=143.73  Aligned_cols=233  Identities=17%  Similarity=0.265  Sum_probs=159.6

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+..|..+|..+.|.|....|++++.|.++++||++..+++..  +.+|.  ..|.+++|.|. +...|++|+.||.|
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~--~SvkS~cf~~~-n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT--GSVKSECFMPT-NPAVFCTGGRDGEI  169 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc--cccchhhhccC-CCcceeeccCCCcE
Confidence            345567999999999999667899999999999999999888876  88888  66999999996 45789999999999


Q ss_pred             EEEEccCCccCC----------------CCcccee---------cccceE---EEEeeccCCccceecCCCCceEEEecc
Q 024245           89 KCWDIENGGLSS----------------NPSLTIK---------TNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV  140 (270)
Q Consensus        89 ~~wd~~~~~~~~----------------~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (270)
                      .|||++-.....                .|.....         ......   ..+..+........+..+.+.+||++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            999996443110                0111100         001111   111112222222333456678899987


Q ss_pred             Cceeee-------ccCCCCC-------eEecCCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCC
Q 024245          141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGR  204 (270)
Q Consensus       141 ~~~~~~-------~~~~~~~-------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~  204 (270)
                      ......       .+..+..       +.....|.+++| ++. |++|+.|++++..  ++..+.        ++..  .
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A-sCt-D~sIy~ynm~s~s~sP~~~~s--------g~~~--~  317 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA-SCT-DNSIYFYNMRSLSISPVAEFS--------GKLN--S  317 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-Eec-CCcEEEEeccccCcCchhhcc--------Cccc--c
Confidence            654322       1112211       455566788887 444 8999999998644  344444        3321  1


Q ss_pred             ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ..-..- +.+|+   +. +|++|+.|...++|.+.++..+...+.+|...|++++|.|.
T Consensus       318 sf~vks-~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  318 SFYVKS-ELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             eeeeee-ecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            111112 36774   44 99999999999999999988999999999999999999884

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.2e-21  Score=155.43  Aligned_cols=191  Identities=18%  Similarity=0.315  Sum_probs=159.6

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      +.+..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|.  .+|.++.|++  +..+|++|+.+|+|++|
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--spIeSl~f~~--~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE--SPIESLTFDT--SERLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC--CcceeeecCc--chhhhcccccCCceeee
Confidence            4566789999999987788999999999999999998877777888998  7799999999  87889999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      |++.++.++    ++.++......                                      +.|+|-+.+.  ++|+.|
T Consensus        98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd  133 (825)
T KOG0267|consen   98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD  133 (825)
T ss_pred             ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence            999887654    33333333221                                      4588888755  489999


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      ..+++||.+...+.+.+.        +|.    ..+..+. |+|   +|+ +++.|++|..++|||+.. ++.+..|+.|
T Consensus       134 td~~iwD~Rk~Gc~~~~~--------s~~----~vv~~l~-lsP---~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~  195 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYK--------SHT----RVVDVLR-LSP---DGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH  195 (825)
T ss_pred             ccceehhhhccCceeeec--------CCc----ceeEEEe-ecC---CCc-eeeccCCcceeeeecccc-cccccccccc
Confidence            999999999989999998        663    3455555 999   566 999999999999999998 9999999999


Q ss_pred             CCCeeEEEeecCCCcee
Q 024245          252 LEPGLECSMWRNPITMS  268 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~ls  268 (270)
                      ...+..+.|+|...+++
T Consensus       196 e~~v~sle~hp~e~Lla  212 (825)
T KOG0267|consen  196 EGKVQSLEFHPLEVLLA  212 (825)
T ss_pred             cccccccccCchhhhhc
Confidence            99999999999877665

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.1e-19  Score=135.16  Aligned_cols=172  Identities=19%  Similarity=0.324  Sum_probs=129.6

Q ss_pred             cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      -+-.+.||+++|..++|+| +...|||||+|.+|.||++..+       +++..+.+|.  ..|--++|+|.. .+.|++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA-~NVLls  149 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTA-PNVLLS  149 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccc-hhhHhh
Confidence            3446789999999999999 7779999999999999999764       4677888998  569999999963 488999


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCC
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  161 (270)
                      ++.|.+|.+||+.+++..-    .+. ++..+.  +                                    ++|+.+|.
T Consensus       150 ag~Dn~v~iWnv~tgeali----~l~-hpd~i~--S------------------------------------~sfn~dGs  186 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALI----TLD-HPDMVY--S------------------------------------MSFNRDGS  186 (472)
T ss_pred             ccCCceEEEEeccCCceee----ecC-CCCeEE--E------------------------------------EEeccCCc
Confidence            9999999999999996432    333 322221  1                                    45888997


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec---CCCcEEEEEc
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDI  238 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~---~dg~i~vwd~  238 (270)
                      .+.  +.+.|..|+|||.++++.+..-.        +|.+.....+.    |-.   +|. ++.||-   ++..+-+||-
T Consensus       187 ~l~--TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Rai----fl~---~g~-i~tTGfsr~seRq~aLwdp  248 (472)
T KOG0303|consen  187 LLC--TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARAI----FLA---SGK-IFTTGFSRMSERQIALWDP  248 (472)
T ss_pred             eee--eecccceeEEEcCCCCcEeeecc--------cccCCCcceeE----Eec---cCc-eeeeccccccccceeccCc
Confidence            554  56689999999999999988876        67554333332    554   454 555553   5778999997


Q ss_pred             CCCCcce
Q 024245          239 RNPGIPL  245 (270)
Q Consensus       239 ~~~~~~~  245 (270)
                      .+..+++
T Consensus       249 ~nl~eP~  255 (472)
T KOG0303|consen  249 NNLEEPI  255 (472)
T ss_pred             ccccCcc
Confidence            7655543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=8.5e-19  Score=142.81  Aligned_cols=228  Identities=13%  Similarity=0.129  Sum_probs=155.9

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      .+|+..-+.++|.|+|++|++++.||.|++|+..+. +....+..+.  ..|.+++...    ++|++++.+++|.+|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence            468889999999999999999999999999998765 4444444344  5577777644    79999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE---EEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC---YEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~  166 (270)
                      .+++...  ++..-..+...+  .+.  ..+..++.++.+..   .+..+. .....+.+|..    +.|+|.+..+.+ 
T Consensus        84 ps~~~~~--iL~Rftlp~r~~--~v~--g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAv-  155 (933)
T KOG1274|consen   84 PSGEEDT--ILARFTLPIRDL--AVS--GSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAV-  155 (933)
T ss_pred             CCCCccc--eeeeeeccceEE--EEe--cCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEE-
Confidence            8876432  222222222222  222  22233333443333   333333 33446667766    889999974443 


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC-CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       .+-||.|++||+.++.+..++..-.     .-.... ...+..++ |+|+   |. .|+....|+.|++|+... ..+.
T Consensus       156 -ss~dG~v~iw~~~~~~~~~tl~~v~-----k~n~~~~s~i~~~~a-W~Pk---~g-~la~~~~d~~Vkvy~r~~-we~~  223 (933)
T KOG1274|consen  156 -SSCDGKVQIWDLQDGILSKTLTGVD-----KDNEFILSRICTRLA-WHPK---GG-TLAVPPVDNTVKVYSRKG-WELQ  223 (933)
T ss_pred             -EecCceEEEEEcccchhhhhcccCC-----ccccccccceeeeee-ecCC---CC-eEEeeccCCeEEEEccCC-ceeh
Confidence             3448999999999998887776210     111112 44566777 9996   33 688888899999999887 7766


Q ss_pred             eeeec--cCCCeeEEEeecCCCcee
Q 024245          246 TAMKV--HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~--~~~~v~~~~~s~~g~~ls  268 (270)
                      ..+..  +...+..++|+|+|+||.
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEe
Confidence            66653  445599999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.6e-20  Score=153.27  Aligned_cols=226  Identities=13%  Similarity=0.187  Sum_probs=160.4

Q ss_pred             cccEEEEEEeCCCCE----EEEecCCCcEEEEeCCC---C---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~----l~s~~~dg~i~vwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ...-+.++|.+.|..    ||.|.+||.|.+||...   +   ..+..+..|.  +.|..+.|++. .++.|++|+.||.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~-q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPF-QGNLLASGADDGE  140 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC--Cceeeeecccc-CCceeeccCCCCc
Confidence            356789999996654    99999999999999865   2   3445566777  66999999996 4479999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCC----CC-eEecCCC
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCD----SK-DDVPAEG  160 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~s~~~  160 (270)
                      |.|||+++-+....+-  -......+..+++..  ..........+...+||++..+.+.......    -. ++|+|+.
T Consensus       141 I~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH  218 (1049)
T ss_pred             EEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence            9999998854322111  011112222222222  2222333344566789999886554432222    22 9999998


Q ss_pred             CeEEEEecCCCc--eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          161 PKYMAVAGEQLS--EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       161 ~~~~~~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ..-++++..+|+  .|.+||+|.- .++++++        +|.    ..+.++. |++.  |.+ +|++++.|+.|.+|+
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP~k~~~--------~H~----~Gilsls-Wc~~--D~~-lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILE--------GHQ----RGILSLS-WCPQ--DPR-LLLSSGKDNRIICWN  282 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCchhhhc--------ccc----cceeeec-cCCC--Cch-hhhcccCCCCeeEec
Confidence            776665555444  6999999854 4677776        773    3577787 9986  445 999999999999999


Q ss_pred             cCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          238 IRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      .++ ++.+..+....+++..+.|+|..-
T Consensus       283 ~~t-gEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  283 PNT-GEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             CCC-ceEeeecCCCCcceeeeeecCCCc
Confidence            999 899999988888999999999543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=4.1e-19  Score=127.11  Aligned_cols=231  Identities=15%  Similarity=0.144  Sum_probs=162.9

Q ss_pred             cccccccccEEEEEEeC-CCCEEEEecCC-------CcEEEEeCCCC---------ceeEEEe-ecCCCcceEEEEEeeC
Q 024245           12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQH---------RTVSSSW-VHSAAHGIVSVATGPS   73 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~~~-~~~~~~~v~~~~~~~~   73 (270)
                      ..|..|.+.|+.++-+| +.++|+++-.+       -.+.||.+...         +++..+. .+-  +.|.|+.|.| 
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P-  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP-  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence            45677889999999999 66677776442       24789998653         2333343 222  4599999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCccCCCCccce-ec-ccceE--EEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI-KT-NSYHF--CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (270)
Q Consensus        74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (270)
                       ++..+++.. |..|.+|++..+......+... .. ....+  ..+++.-.........++....||+++.+.....-.
T Consensus       134 -ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  134 -NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             -CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence             888888776 7889999998775422111111 11 11122  223333333445566677788899998888877777


Q ss_pred             CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       150 ~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                      +|..    +.|+|+.+++++ ++++||.|+|||.|.-+ +++++.        +|    ...++++. |+|.  ..+ +|
T Consensus       212 AHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~--hdq-Li  274 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPE--HDQ-LI  274 (370)
T ss_pred             hhcceeeeccCCCCceEEEE-EcCCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCc--cce-EE
Confidence            8866    899999998887 56679999999998644 777777        66    44899998 9997  455 99


Q ss_pred             EEecCCCcEEEEEcCCC----------------------------CcceeeeeccCCCeeEEEeecCC
Q 024245          225 LAGYEDGSILVWDIRNP----------------------------GIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       225 ~~~~~dg~i~vwd~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      ++|+.|..|.+|....-                            ...+.++..|.+.|++++||.-.
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD  342 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence            99999999999964321                            01345777899999999998643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=6.6e-18  Score=130.37  Aligned_cols=221  Identities=11%  Similarity=0.079  Sum_probs=145.6

Q ss_pred             cccccccccccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-c
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-T   87 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~   87 (270)
                      .+..+..+. .+..++|+|+++.+++ ++.|+.|++||+.+.+.+..+...   ..+.+++|+|  ++.++++++.++ .
T Consensus        65 ~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~--dg~~l~~~~~~~~~  138 (300)
T TIGR03866        65 VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSP--DGKIVVNTSETTNM  138 (300)
T ss_pred             EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcceEEECC--CCCEEEEEecCCCe
Confidence            344444443 3567899999987654 456899999999988877776543   3368899999  999999888765 5


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeec-cCC---C----C--CeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTD-SLC---D----S--KDD  155 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~---~----~--~~~  155 (270)
                      +.+||.++++....  . .......  .+.+.......  .....+...+|++.+++.+... +..   +    .  .++
T Consensus       139 ~~~~d~~~~~~~~~--~-~~~~~~~--~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  213 (300)
T TIGR03866       139 AHFIDTKTYEIVDN--V-LVDQRPR--FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK  213 (300)
T ss_pred             EEEEeCCCCeEEEE--E-EcCCCcc--EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence            67789887654320  0 0111111  12222222212  1123455778888877654321 110   1    1  178


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCCcEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSIL  234 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg~i~  234 (270)
                      |+|+++.++++.+. ++.+.+||+++++.+..+..       +      ..+.++. |+|+   |+ +|+++ +.+|.|.
T Consensus       214 ~s~dg~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-------~------~~~~~~~-~~~~---g~-~l~~~~~~~~~i~  274 (300)
T TIGR03866       214 LTKDGKTAFVALGP-ANRVAVVDAKTYEVLDYLLV-------G------QRVWQLA-FTPD---EK-YLLTTNGVSNDVS  274 (300)
T ss_pred             ECCCCCEEEEEcCC-CCeEEEEECCCCcEEEEEEe-------C------CCcceEE-ECCC---CC-EEEEEcCCCCeEE
Confidence            99999987664443 57899999998887765541       1      2466777 9995   55 66665 5799999


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +||+++ ++++..++.. ..+++++++|
T Consensus       275 v~d~~~-~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       275 VIDVAA-LKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCC-CcEEEEEEcc-cccceeEeCC
Confidence            999999 8888888854 6669999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2e-20  Score=155.36  Aligned_cols=211  Identities=17%  Similarity=0.232  Sum_probs=160.1

Q ss_pred             CcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ..+.++..|++.|..+.|++.+ .+||+|+.||.|.|||+.+-+.-..+......+.|.+++|+.. ....|++++.+|.
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~  185 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR  185 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence            4677888999999999999954 5999999999999999987544434422222366999999984 3467889999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecC-----CCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQA-----NEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      +.|||++..+    ++..+........+-.+.+++...  ....     .-.+.+||++........+++|..    +.|
T Consensus       186 ~~iWDlr~~~----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW  261 (1049)
T KOG0307|consen  186 AVIWDLRKKK----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW  261 (1049)
T ss_pred             ceeccccCCC----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence            9999999874    344555444433333444554432  2211     123566999988888888999988    788


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      ++.+..++++ ++.|+.|.+|+.++++.+..+..            ....+..+. |.|..++   .+++++-||.|-|+
T Consensus       262 c~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~------------~~nW~fdv~-w~pr~P~---~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  262 CPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPA------------QGNWCFDVQ-WCPRNPS---VMAAASFDGKISIY  324 (1049)
T ss_pred             CCCCchhhhc-ccCCCCeeEecCCCceEeeecCC------------CCcceeeee-ecCCCcc---hhhhheeccceeee
Confidence            8888778774 55799999999999999999983            245788898 9997542   89999999999999


Q ss_pred             EcCCC
Q 024245          237 DIRNP  241 (270)
Q Consensus       237 d~~~~  241 (270)
                      .+...
T Consensus       325 sl~~~  329 (1049)
T KOG0307|consen  325 SLQGT  329 (1049)
T ss_pred             eeecC
Confidence            98763

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.3e-19  Score=140.30  Aligned_cols=216  Identities=16%  Similarity=0.212  Sum_probs=146.8

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----------ceeEEEeecCCCcceEEEEEeeCCCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSSWVHSAAHGIVSVATGPSIGLN   77 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (270)
                      .+++.+|++|+++|.|+++.+++..+++|+-||+|+.|++...          .....+.+|.  +.|+.+++++  ...
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s~--~~~  409 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALSS--TKD  409 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeecc--ccc
Confidence            3689999999999999999999999999999999999976421          2345678898  6699999999  777


Q ss_pred             EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEe---ccCceeee----ccC
Q 024245           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYER---EVGETVDT----DSL  149 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~----~~~  149 (270)
                      .|++++.||++++|+......     .++..........+++..... ...........+.+   .....+..    ...
T Consensus       410 ~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWEPTEESP-----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP  484 (577)
T ss_pred             ceeeecCCceEEeeccCCcCc-----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence            899999999999999876543     111111111111222221111 11111112222222   22211111    001


Q ss_pred             -----CCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          150 -----CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       150 -----~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                           .+.+ +...|.....+  ++..|+.|+++|..++.++....        .|    ...+.+++ +.|+   |. +
T Consensus       485 ~~~~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~----~~svtsla-i~~n---g~-~  545 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AH----KDSVTSLA-IDPN---GP-Y  545 (577)
T ss_pred             cccccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------ec----cceeccee-ecCC---Cc-e
Confidence                 1111 67778886444  67789999999999999988877        56    34677777 9985   44 9


Q ss_pred             EEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      |++|+.|+.+++|.+.. ..++.....|.
T Consensus       546 l~s~s~d~sv~l~kld~-k~~~~es~~~r  573 (577)
T KOG0642|consen  546 LMSGSHDGSVRLWKLDV-KTCVLESTAHR  573 (577)
T ss_pred             EEeecCCceeehhhccc-hheeecccccc
Confidence            99999999999999987 66666666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=4.5e-20  Score=134.04  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=140.3

Q ss_pred             CCcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .++...+.||..+|+.+.|+|+ .++++++|.|..|++|++++..++..+-   +|.  +.|.++.|++  +|.+|++++
T Consensus       125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr--deVLSvD~~~--~gd~i~ScG  200 (385)
T KOG1034|consen  125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR--DEVLSVDFSL--DGDRIASCG  200 (385)
T ss_pred             hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc--CcEEEEEEcC--CCCeeeccC
Confidence            3567789999999999999994 5699999999999999999999998875   566  6699999999  999999999


Q ss_pred             CCCcEEEEEccCCccCCCC--ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee---ccCCCCC--eEe
Q 024245           84 RDGTVKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSK--DDV  156 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~  156 (270)
                      .|.+|++|++...+.....  .......... ..                      +.+......   ...-|..  -+.
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~-~p----------------------fpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTT-RP----------------------FPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCcc-Cc----------------------CCccccccccccccccccchHHHH
Confidence            9999999999865432100  0000000000 00                      000000000   1111222  112


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccC-cCCCCCCcccCCCceeeeee-ecCCCCCCCceEEEEecCCCcE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQN-SCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ..-|++++  +-+-++.|..|... -.+.+...+.+ ......++-.-....++-+. +|.|-   ++ .||.|...|.|
T Consensus       258 rw~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v  331 (385)
T KOG1034|consen  258 RWFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKV  331 (385)
T ss_pred             HHHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcE
Confidence            22344444  44446899999873 22333333211 11122223222233344333 15553   33 89999999999


Q ss_pred             EEEEcCCCCcce-eeee--ccCCCeeEEEeecCCCcee
Q 024245          234 LVWDIRNPGIPL-TAMK--VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       234 ~vwd~~~~~~~~-~~~~--~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++||++....+. .++.  .....|.+.+||.||..|-
T Consensus       332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV  369 (385)
T ss_pred             EEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence            999999843322 2222  1236799999999998763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=7.7e-20  Score=140.03  Aligned_cols=199  Identities=13%  Similarity=0.191  Sum_probs=149.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +....+..-.-+..+++.+||.++.+++..||.|.|||+.+...++.|++|.  +.+.||.+++  +|..|.||+-|++|
T Consensus       500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntv  575 (705)
T KOG0639|consen  500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTV  575 (705)
T ss_pred             chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccce
Confidence            4445555555678899999999999999999999999999999999999999  7799999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      |.||+++++...       .+......+++...+..--++.+.. ...+-+...+..+..+.-|+.    +.|++.|+.+
T Consensus       576 RcWDlregrqlq-------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  576 RCWDLREGRQLQ-------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             eehhhhhhhhhh-------hhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence            999999987543       2333333445544444443333332 233434444444445555666    8899999855


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      +  +.+.|..+..|...-|..+...+             ....++++. .+-+   .+ |++||+.|....||.+
T Consensus       649 v--StGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCD-IS~d---dk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 V--STGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCD-ISFD---DK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             e--ecCchhhhhhccCccccceeecc-------------ccCcceeee-eccC---ce-EEEecCCCcceEEEEE
Confidence            4  44579999999999998887776             355677776 7753   44 9999999999888875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=9.2e-19  Score=141.29  Aligned_cols=195  Identities=16%  Similarity=0.226  Sum_probs=150.8

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE---eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      -...+++++.++-|++.+.|...|.|-+|++.+|-....+   ..|.  .+|++++...  -++.+++++.+|.+++||.
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~--~~V~gla~D~--~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK--GEVTGLAVDG--TNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc--CceeEEEecC--CCceEEEccCcceEEEEec
Confidence            3468999999999999999999999999999999888888   4677  6699999988  6688999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~  169 (270)
                      .+.....    .+.-....................+...+.++|..+.+.++ .+.+|.+    ++|||||+.++  +++
T Consensus       523 ~~k~l~~----~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-~f~gh~nritd~~FS~DgrWli--sas  595 (910)
T KOG1539|consen  523 KKKVLKK----SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-EFWGHGNRITDMTFSPDGRWLI--SAS  595 (910)
T ss_pred             CCcceee----eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-HhhccccceeeeEeCCCCcEEE--Eee
Confidence            9876433    22222222222222223333444555566778887776655 6777877    99999998665  566


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-CcEEEEEcCC
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN  240 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d-g~i~vwd~~~  240 (270)
                      .|++|++||+.++.++..+.             ....+.++. |+|+   |. +|||...| .-|++|--++
T Consensus       596 mD~tIr~wDlpt~~lID~~~-------------vd~~~~sls-~SPn---gD-~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLL-------------VDSPCTSLS-FSPN---GD-FLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCCcEEEEeccCcceeeeEe-------------cCCcceeeE-ECCC---CC-EEEEEEecCceEEEEEchh
Confidence            79999999999999998887             356788898 9995   55 99999998 5699997554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=3e-18  Score=123.55  Aligned_cols=176  Identities=18%  Similarity=0.264  Sum_probs=129.5

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .++.|..+.|+|.+..|+.++.||++++||+...+....+. |.  .++.+.+|.+  + ..+++|+.||.|+.+|++++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence            47889999999988888889999999999999886666665 44  6799999998  6 88999999999999999987


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i  176 (270)
                      ...     .+..+.....++.                                      .++....++  +|+.|++|++
T Consensus        86 ~~~-----~igth~~~i~ci~--------------------------------------~~~~~~~vI--sgsWD~~ik~  120 (323)
T KOG1036|consen   86 NED-----QIGTHDEGIRCIE--------------------------------------YSYEVGCVI--SGSWDKTIKF  120 (323)
T ss_pred             cce-----eeccCCCceEEEE--------------------------------------eeccCCeEE--EcccCccEEE
Confidence            632     2333333333222                                      333333333  7999999999


Q ss_pred             EeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-ccCCCe
Q 024245          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPG  255 (270)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v  255 (270)
                      ||.+.......+..             ...+.++. ..     |. .|+.|..|..|.+||+++...+.+.-. ..+-.+
T Consensus       121 wD~R~~~~~~~~d~-------------~kkVy~~~-v~-----g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt  180 (323)
T KOG1036|consen  121 WDPRNKVVVGTFDQ-------------GKKVYCMD-VS-----GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT  180 (323)
T ss_pred             Eecccccccccccc-------------CceEEEEe-cc-----CC-EEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence            99997555555541             23566655 43     22 899999999999999998666553322 234578


Q ss_pred             eEEEeecC
Q 024245          256 LECSMWRN  263 (270)
Q Consensus       256 ~~~~~s~~  263 (270)
                      .++++-|+
T Consensus       181 R~v~~~pn  188 (323)
T KOG1036|consen  181 RCVALVPN  188 (323)
T ss_pred             EEEEEecC
Confidence            89998883

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=4.5e-19  Score=133.53  Aligned_cols=173  Identities=22%  Similarity=0.291  Sum_probs=128.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCce---e----------------E--EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRT---V----------------S--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~---~----------------~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .|+++|.|..|..|.|||+.-...   .                +  .-.+|+  +.|.+++|+.. ..+.|+|||.|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~-~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN-FRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc-cceeEEecCCCce
Confidence            367999999999999999853110   0                0  112455  66889999873 3478999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      |++||+.++++..    .+..+...+..                                      +.|+|....+++ +
T Consensus       268 V~lWD~~~g~p~~----s~~~~~k~Vq~--------------------------------------l~wh~~~p~~LL-s  304 (463)
T KOG0270|consen  268 VKLWDVDTGKPKS----SITHHGKKVQT--------------------------------------LEWHPYEPSVLL-S  304 (463)
T ss_pred             EEEEEcCCCCcce----ehhhcCCceeE--------------------------------------EEecCCCceEEE-e
Confidence            9999999997644    44434333332                                      347777666665 7


Q ss_pred             cCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          168 GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      |+.|++|.+.|+|.. ..-..++             ..+.+-.++ |.|...   ..++++..||+|+-+|+|.+++++.
T Consensus       305 Gs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~v~~~D~R~~~~~vw  367 (463)
T KOG0270|consen  305 GSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVW  367 (463)
T ss_pred             ccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCceEEeeecCCCCCcee
Confidence            999999999999942 2222233             234566666 888633   3899999999999999999999999


Q ss_pred             eeeccCCCeeEEEeecCC
Q 024245          247 AMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g  264 (270)
                      +++.|.++|.+|++++.-
T Consensus       368 t~~AHd~~ISgl~~n~~~  385 (463)
T KOG0270|consen  368 TLKAHDDEISGLSVNIQT  385 (463)
T ss_pred             EEEeccCCcceEEecCCC
Confidence            999999999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5.1e-19  Score=132.47  Aligned_cols=190  Identities=17%  Similarity=0.183  Sum_probs=130.3

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      .+++|+.+|..|++|+.||.+|||+..+...+.....|.  ..|.++.|+|  ||++|++.+.| ..+||+.+++..+. 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~--~eV~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a-  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH--AEVKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALA-  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc--CccccceeCC--CCcEEEEecCC-ceEEEEeccCchhh-
Confidence            789999999999999999999999988887777777777  5599999999  99999999999 89999999985433 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC---CeEEEEecCCCceEEEEe
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD  178 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~d~~i~iwd  178 (270)
                       ..+.......+..                                      +.|+.++   ..++++.-..-+.|+.||
T Consensus       222 -~~t~~~k~~~~~~--------------------------------------cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  222 -RKTPFSKDEMFSS--------------------------------------CRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             -hcCCcccchhhhh--------------------------------------ceecccCCCceEEEEEecCCCCceeEEE
Confidence             1110111111100                                      2233333   344444555556777776


Q ss_pred             CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC  258 (270)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  258 (270)
                      +.....-..+..       .........+.+++ .++   +|+ +++.|+.||.|-|++..+.......-+.|...|+.+
T Consensus       263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~---dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l  330 (398)
T KOG0771|consen  263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSD---DGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL  330 (398)
T ss_pred             eeeeccccccch-------hhhhhccCcceeEE-EcC---CCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence            643221111110       00000122566676 777   566 999999999999999998433344445799999999


Q ss_pred             EeecCCCcee
Q 024245          259 SMWRNPITMS  268 (270)
Q Consensus       259 ~~s~~g~~ls  268 (270)
                      .|+||.+++-
T Consensus       331 tF~Pdsr~~~  340 (398)
T KOG0771|consen  331 TFSPDSRYLA  340 (398)
T ss_pred             EEcCCcCccc
Confidence            9999988754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.4e-18  Score=122.88  Aligned_cols=204  Identities=14%  Similarity=0.217  Sum_probs=135.4

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEee-----------------
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP-----------------   72 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------   72 (270)
                      +-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..|.+++.+...   ++|+...|+|                 
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~n~~va~~~~~sp~v  133 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKRNKCVATIMEESPVV  133 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccCCeEEEEEecCCcEE
Confidence            45678899999999999999999999999999999999999888776544   3345444444                 


Q ss_pred             ----------------------------CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc-ceEEEEeeccCCc
Q 024245           73 ----------------------------SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPY  123 (270)
Q Consensus        73 ----------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  123 (270)
                                                  ...|+++++|...|.+.++|.++.+++.    .++... .....+.+.  ..
T Consensus       134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va----s~rits~~~IK~I~~s--~~  207 (405)
T KOG1273|consen  134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA----SFRITSVQAIKQIIVS--RK  207 (405)
T ss_pred             EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee----eeeechheeeeEEEEe--cc
Confidence                                        0146788888888999999988876654    222211 112222222  22


Q ss_pred             cceecCCCCce---EEEeccCc------eee--eccCC------CCCeEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245          124 ANAKQANEPKD---CYEREVGE------TVD--TDSLC------DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (270)
Q Consensus       124 ~~~~~~~~~~~---~~~~~~~~------~~~--~~~~~------~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  186 (270)
                      +..+.....++   .+++..-.      .+.  ..++.      -..++|+.+|.++++.+ .....++||.-..|.+++
T Consensus       208 g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVK  286 (405)
T KOG1273|consen  208 GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVK  286 (405)
T ss_pred             CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc-ccceeEEEEecCCcceee
Confidence            22233333333   33333110      000  00100      11189999999988755 557899999999999999


Q ss_pred             eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .+.        |..   ......+. |+|..+    .+++- ..|.|++|....
T Consensus       287 ILh--------G~k---gE~l~DV~-whp~rp----~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  287 ILH--------GTK---GEELLDVN-WHPVRP----IIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             eec--------CCc---hhheeecc-ccccee----eeeec-cCCceEEEEeec
Confidence            998        332   23566777 998644    56665 789999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2e-19  Score=143.94  Aligned_cols=214  Identities=16%  Similarity=0.233  Sum_probs=155.6

Q ss_pred             CCcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .+.+..|..|+..|+++.|++ ...+|++||.||.|++||++..+...++.+..  ..|..++|+|. .++.++++.+.|
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS--ESiRDV~fsp~-~~~~F~s~~dsG  199 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS--ESIRDVKFSPG-YGNKFASIHDSG  199 (839)
T ss_pred             chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc--hhhhceeeccC-CCceEEEecCCc
Confidence            456778999999999999999 56699999999999999999998888888866  77999999997 568999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc---eEEEeccCceeee--ccC-CCCC-eEecCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETVDT--DSL-CDSK-DDVPAE  159 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~-~~~~-~~~s~~  159 (270)
                      .+.+||++...   ++.+.+..+.....+  +.++|....+++++.+   .+|+....+....  .-. .... +.|-|+
T Consensus       200 ~lqlWDlRqp~---r~~~k~~AH~GpV~c--~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  200 YLQLWDLRQPD---RCEKKLTAHNGPVLC--LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             eEEEeeccCch---hHHHHhhcccCceEE--EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            99999998765   344566666655544  4445566666666655   4577665432221  111 1111 899999


Q ss_pred             CCeEEEEecC-CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          160 GPKYMAVAGE-QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       160 ~~~~~~~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      .++.|++++. .|-.|+|||++-.- +..++.        .|..    .+..++ |...  |-. .|.+++.||+|..-.
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--------eH~~----~vt~i~-W~~~--d~~-~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--------EHTD----SVTGIA-WDSG--DRI-NLWSCSKDGTVLQHL  338 (839)
T ss_pred             ccchhhhhhccccceEEEEeeccccccceeee--------ccCc----ccccee-ccCC--Cce-eeEeecCccHHHHhh
Confidence            9988875443 37789999998544 445555        4643    455554 7642  233 899999999998877


Q ss_pred             cCCCCcce
Q 024245          238 IRNPGIPL  245 (270)
Q Consensus       238 ~~~~~~~~  245 (270)
                      +++...++
T Consensus       339 ~knat~pi  346 (839)
T KOG0269|consen  339 FKNATTPI  346 (839)
T ss_pred             hhcccChh
Confidence            76644443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=1.7e-17  Score=134.11  Aligned_cols=245  Identities=17%  Similarity=0.282  Sum_probs=152.8

Q ss_pred             CcccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.+.+++.-.+.|+.++|..||+ .||+|+..|.+.+||++..+.+..+. .|.  +.|....|.|  ....+++++.|+
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~--~epVl~ta~~Dn  310 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLP--GEPVLVTAGADN  310 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecC--CCceEeeccCCC
Confidence            34556664459999999999988 67888888999999999887776665 665  6699999999  878899999999


Q ss_pred             cEEEEEccCCccCC----------CCcccee--cccceE-----------------------------------------
Q 024245           87 TVKCWDIENGGLSS----------NPSLTIK--TNSYHF-----------------------------------------  113 (270)
Q Consensus        87 ~i~~wd~~~~~~~~----------~~~~~~~--~~~~~~-----------------------------------------  113 (270)
                      .+++|=.+++.-..          .|...+.  +.....                                         
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            99888554322100          0000000  000000                                         


Q ss_pred             -----------------------------------------------------------EEEeeccCCccce---ecCCC
Q 024245          114 -----------------------------------------------------------CKLSLVKEPYANA---KQANE  131 (270)
Q Consensus       114 -----------------------------------------------------------~~~~~~~~~~~~~---~~~~~  131 (270)
                                                                                 ...+++.+.++.+   ....+
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence                                                                       0000000011100   11112


Q ss_pred             CceEEEeccCceeeec--cCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC------------
Q 024245          132 PKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG------------  195 (270)
Q Consensus       132 ~~~~~~~~~~~~~~~~--~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------  195 (270)
                      .+..+++..+-.....  ...|..  ..++-|+.+-++++++.+|.+++||.....++..+...+...            
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a  550 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA  550 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence            2222333333222211  123333  445555544333466679999999998777655554322110            


Q ss_pred             ---------------------CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          196 ---------------------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       196 ---------------------~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                                           ..||.    ..+++++ |+|   ||+ +|++++.|++|++||+.+ +.++..+.. ..+
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~----nritd~~-FS~---Dgr-WlisasmD~tIr~wDlpt-~~lID~~~v-d~~  619 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHG----NRITDMT-FSP---DGR-WLISASMDSTIRTWDLPT-GTLIDGLLV-DSP  619 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccc----cceeeeE-eCC---CCc-EEEEeecCCcEEEEeccC-cceeeeEec-CCc
Confidence                                 02453    3577777 999   566 999999999999999999 888877764 678


Q ss_pred             eeEEEeecCCCcee
Q 024245          255 GLECSMWRNPITMS  268 (270)
Q Consensus       255 v~~~~~s~~g~~ls  268 (270)
                      ++++.|||+|.+|.
T Consensus       620 ~~sls~SPngD~LA  633 (910)
T KOG1539|consen  620 CTSLSFSPNGDFLA  633 (910)
T ss_pred             ceeeEECCCCCEEE
Confidence            99999999999975

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=1.7e-18  Score=125.87  Aligned_cols=226  Identities=12%  Similarity=0.139  Sum_probs=155.1

Q ss_pred             ccEEEEEEe-------CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc---ceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           19 ASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        19 ~~v~~~~~s-------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..|...+|-       |+..++|+.+++.-|.+||.-+|+....+.+..+.+   .-.+++|+|  ||..|++|- ...|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceE
Confidence            456777664       566799999999999999999999888877644322   246899999  999998764 5689


Q ss_pred             EEEEc-cCCccCCCCccceec--ccceEEEEeeccCCccc-eecCCCCceEEEec--cCceeeeccCCCCC----eEecC
Q 024245           89 KCWDI-ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYAN-AKQANEPKDCYERE--VGETVDTDSLCDSK----DDVPA  158 (270)
Q Consensus        89 ~~wd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~s~  158 (270)
                      ++||+ +.|+... ...++..  .....+...+++++... ..+.++......+.  .+..+...+.+|..    +.|.+
T Consensus       182 rvFdt~RpGr~c~-vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  182 RVFDTSRPGRDCP-VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EEeeccCCCCCCc-chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence            99999 5554322 1111111  11111222233333332 45555555554443  34455556667777    89999


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      +|+.++. .+-.|-.|-.||+|.. .++..+.        +|....+..+   . |.-+ ++++ +|++|+.||.|++||
T Consensus       261 dGn~lfs-GaRk~dkIl~WDiR~~~~pv~~L~--------rhv~~TNQRI---~-FDld-~~~~-~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  261 DGNKLFS-GARKDDKILCWDIRYSRDPVYALE--------RHVGDTNQRI---L-FDLD-PKGE-ILASGDTDGSVRVWD  325 (406)
T ss_pred             CcCeecc-cccCCCeEEEEeehhccchhhhhh--------hhccCccceE---E-EecC-CCCc-eeeccCCCccEEEEe
Confidence            9998874 3445788999999854 5777887        6654323222   2 4322 2466 999999999999999


Q ss_pred             cCCCCcceeeeeccCCCeeEEEeecC
Q 024245          238 IRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ++..+.++..+..++..++.++++|-
T Consensus       326 lk~~gn~~sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  326 LKDLGNEVSVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             cCCCCCcccccccccccccceecCcc
Confidence            99988888888889999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=8.9e-18  Score=125.36  Aligned_cols=87  Identities=26%  Similarity=0.410  Sum_probs=74.6

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--------C--------CceeEEEeecCCCcceEEEEEeeC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS   73 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~   73 (270)
                      .+..|..|+.+|+++.|+|+|++||||+.+|.|.+|-..        +        ....+.+.+|.  ..|+.++|+| 
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~--~diydL~Ws~-  133 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR--DDIYDLAWSP-  133 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc--cchhhhhccC-
Confidence            456788999999999999999999999999999999866        2        12334566777  5599999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           74 IGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                       +++++++++.|..+++||+..+....
T Consensus       134 -d~~~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen  134 -DSNFLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             -CCceeeeeeccceEEEEEeccceeEe
Confidence             99999999999999999999997654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.2e-18  Score=133.51  Aligned_cols=208  Identities=17%  Similarity=0.280  Sum_probs=149.6

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .++..|.+.|+.++|+|....|++++.||.|.+|++..        -+++.+|.+|.  ++|.|+++.+  ++..+++|+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~--gPVl~v~v~~--n~~~~ysgg  363 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE--GPVLCVVVPS--NGEHCYSGG  363 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc--CceEEEEecC--CceEEEeec
Confidence            37888999999999999888999999999999999932        25777888998  7799999999  999999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      -||+|+.|++.... ..     ..                              ......+...+.||..    +++|+.
T Consensus       364 ~Dg~I~~w~~p~n~-dp-----~d------------------------------s~dp~vl~~~l~Ghtdavw~l~~s~~  407 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQ-DP-----DD------------------------------SYDPSVLSGTLLGHTDAVWLLALSST  407 (577)
T ss_pred             cCceeeeeccCCCC-Cc-----cc------------------------------ccCcchhccceeccccceeeeeeccc
Confidence            99999999886221 00     00                              0001122234455555    677777


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCC---------------------------------------CCcc
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS---------------------------------------PNFS  200 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------------~~h~  200 (270)
                      ..+++  +++.||++++|+.....+ .++..+.....                                       .+-.
T Consensus       408 ~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  408 KDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP  484 (577)
T ss_pred             cccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence            77655  566799999999765544 22221110000                                       0000


Q ss_pred             -cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          201 -SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       201 -~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       ......+..+. ++|..   . +.+++.+|+.|+++|..+ +.++.....|...++++++.|+|.+|-
T Consensus       485 ~~~~~~~in~vV-s~~~~---~-~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~  547 (577)
T KOG0642|consen  485 GPRRYPQINKVV-SHPTA---D-ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLM  547 (577)
T ss_pred             cccccCccceEE-ecCCC---C-eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEE
Confidence             00112234444 67753   2 899999999999999999 999999999999999999999998864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.80  E-value=1.2e-17  Score=132.36  Aligned_cols=247  Identities=16%  Similarity=0.163  Sum_probs=162.0

Q ss_pred             CcccccccccccEEEEEEeCCCC---EEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ..+.++.||.++|+|+.|-|+.+   +|++|+.|+.|.+|.++...  ++..+.+|.    +.++++..  .........
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~  118 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA  118 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence            35678899999999999999777   89999999999999998544  444555544    55666655  323333337


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc----eeeeccCCCCC----eE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD  155 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~  155 (270)
                      .|+.+.+||.+..+......+.+........+++....+....++.++.+...++....    .....+.||..    ++
T Consensus       119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~  198 (764)
T KOG1063|consen  119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA  198 (764)
T ss_pred             cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence            89999999996554211112222222222223444444555666777777777776555    45567889988    88


Q ss_pred             ecCCCC-eEEEEecCCCceEEEEeCCCcceee---------------------eec--cCcCCCCCCcccCCCceeeeee
Q 024245          156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RLH--QNSCGGSPNFSSKGRGMCMAVQ  211 (270)
Q Consensus       156 ~s~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~---------------------~~~--~~~~~~~~~h~~~~~~~~~~~~  211 (270)
                      |...+. .+++++++.|..||||.+.-+....                     .+.  -.......||    ...++++.
T Consensus       199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~  274 (764)
T KOG1063|consen  199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW  274 (764)
T ss_pred             hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence            886554 6666789999999999865332110                     000  0001122377    45889998


Q ss_pred             ecCCCCCCCceEEEEecCCCcEEEEEcCCC-Cc-----ceeeeeccCCCeeEEEeecCCCceecC
Q 024245          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI-----PLTAMKVHLEPGLECSMWRNPITMSEH  270 (270)
Q Consensus       212 ~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~-~~-----~~~~~~~~~~~v~~~~~s~~g~~ls~~  270 (270)
                       |+|.   +. .|++++.|.++-+|.-.+. +-     .+..+.+.....++.-|+|++..|-.|
T Consensus       275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~  334 (764)
T KOG1063|consen  275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH  334 (764)
T ss_pred             -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence             9995   44 8999999999999987652 11     222233444568899999999776544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=8.6e-18  Score=120.83  Aligned_cols=173  Identities=17%  Similarity=0.245  Sum_probs=129.9

Q ss_pred             cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC-CCEEEEEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~d~~i~~w   91 (270)
                      -.+|+-.|..+.|-| |.-.+.+++.|.+++|||..+-+....|+..   +.|++-+++|..- ..++++|..|-.|++-
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            357899999999999 6668999999999999999998888777765   5599999998543 2456788888899999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      |+.+|....    .+.++...+..                                      +.|+|..+++++ +|+.|
T Consensus       174 Di~SGs~sH----~LsGHr~~vla--------------------------------------V~Wsp~~e~vLa-tgsaD  210 (397)
T KOG4283|consen  174 DIASGSFSH----TLSGHRDGVLA--------------------------------------VEWSPSSEWVLA-TGSAD  210 (397)
T ss_pred             eccCCccee----eeccccCceEE--------------------------------------EEeccCceeEEE-ecCCC
Confidence            999997644    44444444332                                      458888887776 78889


Q ss_pred             ceEEEEeCCCc-ceeeeeccC------cCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          172 SEVEIWDLNTA-ERCTRLHQN------SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       172 ~~i~iwd~~~~-~~~~~~~~~------~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      |.|++||++.. .+...+...      .....++    ..+.+..++ |..   +++ ++++++.|..+++|+..++
T Consensus       211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a----h~gkvngla-~tS---d~~-~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  211 GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA----HYGKVNGLA-WTS---DAR-YLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ceEEEEEeecccceeEEeecccCccCcccccccc----ccceeeeee-ecc---cch-hhhhccCccceEEeecccC
Confidence            99999999865 344444310      0111122    355777887 886   566 9999999999999998874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=132.60  Aligned_cols=222  Identities=14%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      .|..++|-|||..|+.+..+ .+.+||...|..++++++|.  +.|++++|+.  +|+++++|+.|+.|.+|.-.-....
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHK--DtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHK--DTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccccccc--ceEEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence            89999999999987776544 69999999999999999999  6699999999  9999999999999999987543322


Q ss_pred             CCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEe
Q 024245          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD  178 (270)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd  178 (270)
                      +    .  .+...+.++++.+-........-+...+|................. .+|..||+++.+  |-.||+|.|-+
T Consensus        89 k----Y--SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal--G~~nGTIsiRN  160 (1081)
T KOG1538|consen   89 K----Y--SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL--GMFNGTISIRN  160 (1081)
T ss_pred             e----e--ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--eccCceEEeec
Confidence            2    1  2333444444444333334444445566766655444433333333 789999987765  66789999875


Q ss_pred             CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-----------------------------------------
Q 024245          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-----------------------------------------  217 (270)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-----------------------------------------  217 (270)
                      -. ++....+..+         +..+..+++++ |+|..                                         
T Consensus       161 k~-gEek~~I~Rp---------gg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis  229 (1081)
T KOG1538|consen  161 KN-GEEKVKIERP---------GGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS  229 (1081)
T ss_pred             CC-CCcceEEeCC---------CCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence            43 4444444421         11223334443 33321                                         


Q ss_pred             --CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          218 --SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       218 --~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                        .+|. +++.|+.|+.+++|.-+  +..+.++.....+|+.++..|++++..
T Consensus       230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEE
Confidence              1566 88888899999998644  666777766778999999999998753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1e-16  Score=129.21  Aligned_cols=234  Identities=18%  Similarity=0.188  Sum_probs=150.2

Q ss_pred             ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCce--eEE--EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~--~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      -...|+|+.|+| +..+||.|..+|.|.+||+..+..  ...  ...+.+..+|..+.|.....+.-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            357899999999 777999999999999999987654  222  223444488999999873233459999999999999


Q ss_pred             EccCCccCCCCc-cc-ee------cccceEEEEeeccCCccceecCCCCceEEE-eccCc--ee------eeccCCCCC-
Q 024245           92 DIENGGLSSNPS-LT-IK------TNSYHFCKLSLVKEPYANAKQANEPKDCYE-REVGE--TV------DTDSLCDSK-  153 (270)
Q Consensus        92 d~~~~~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~------~~~~~~~~~-  153 (270)
                      +++.-....... .. ..      ........+.+.......++.......++. .+.+.  ..      ...+..|.. 
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            887544311000 00 00      011111222222222222222222222222 11111  11      112222333 


Q ss_pred             ---eEecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                         +.++|-+..+++++|  |.+++||... ...++..+..        +    ...+++++ |+|..+   ..++++..
T Consensus       401 v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrp---avF~~~d~  462 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRP---AVFATVDG  462 (555)
T ss_pred             eEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCc---eEEEEEcC
Confidence               888999988887665  8999999988 5667776662        2    34588888 999855   28999999


Q ss_pred             CCcEEEEEcCCC-CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          230 DGSILVWDIRNP-GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       230 dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||.|.+||+... ..|+.+.+.+....+.+.|+++|+.|.
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~la  502 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLA  502 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCcEEE
Confidence            999999998752 457777776667778888999888764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.78  E-value=2.5e-16  Score=120.98  Aligned_cols=217  Identities=16%  Similarity=0.142  Sum_probs=144.4

Q ss_pred             ccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .++++ +.-|.|++|.++|. +++|..+|.|.||+....+..+....|.  +.|.+++...  +| .|++|+.|+.|..|
T Consensus       240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~G-tllSGgKDRki~~W  313 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--DG-TLLSGGKDRKIILW  313 (626)
T ss_pred             ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--Cc-cEeecCccceEEec
Confidence            34443 35799999999985 6799999999999998777777666777  7799999998  85 46669999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      |-.-.+ .+  -..++........+..... .  .....+...+  =.++++-.+  ...+|..    ++.+|+...++ 
T Consensus       314 d~~y~k-~r--~~elPe~~G~iRtv~e~~~-d--i~vGTtrN~iL~Gt~~~~f~~--~v~gh~delwgla~hps~~q~~-  384 (626)
T KOG2106|consen  314 DDNYRK-LR--ETELPEQFGPIRTVAEGKG-D--ILVGTTRNFILQGTLENGFTL--TVQGHGDELWGLATHPSKNQLL-  384 (626)
T ss_pred             cccccc-cc--cccCchhcCCeeEEecCCC-c--EEEeeccceEEEeeecCCceE--EEEecccceeeEEcCCChhhee-
Confidence            932222 11  1222333333332222111 1  1111111111  122222222  2233433    78889887554 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +++.|+.+++|+  ..++..+..             ....+.++. |+|.   |  .+|.|...|...+.|.++ ...+
T Consensus       385 -T~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv  441 (626)
T KOG2106|consen  385 -TCGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLV  441 (626)
T ss_pred             -eccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeE
Confidence             566799999999  455554444             234566777 9995   4  799999999999999998 6655


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..-.. .++++.++|+|+|.+|.
T Consensus       442 ~~~~d-~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  442 TIHTD-NEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             EEEec-CCceEEEEEcCCCCEEE
Confidence            55555 88999999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=121.36  Aligned_cols=174  Identities=19%  Similarity=0.274  Sum_probs=124.4

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      ..+|++-..|.|++||..+++.+..++++.  ..+..+.|........+.+++.||+|++||+++.....  .+.....+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCC
Confidence            468888889999999999999999999988  55889999774345678899999999999999876433  23322222


Q ss_pred             -ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC----CCceEEEEeCCCcce-
Q 024245          111 -YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEVEIWDLNTAER-  184 (270)
Q Consensus       111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~d~~i~iwd~~~~~~-  184 (270)
                       ..+.++...                                      .. ..++ ++|.    .+..|.+||+|..+. 
T Consensus       117 ~~~f~~ld~n--------------------------------------ck-~~ii-~~GtE~~~s~A~v~lwDvR~~qq~  156 (376)
T KOG1188|consen  117 GTPFICLDLN--------------------------------------CK-KNII-ACGTELTRSDASVVLWDVRSEQQL  156 (376)
T ss_pred             CCcceEeecc--------------------------------------Cc-CCeE-EeccccccCceEEEEEEeccccch
Confidence             111111110                                      11 1222 2332    367899999998776 


Q ss_pred             eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc---ceeeeeccCCCeeEEEee
Q 024245          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~s  261 (270)
                      +..+..       .|    ..-++++. |+|..++   +|++||.||.|.|+|++...+   .+.++. |...|..+.|.
T Consensus       157 l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~  220 (376)
T KOG1188|consen  157 LRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWL  220 (376)
T ss_pred             hhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeee
Confidence            666664       56    44688888 9997543   999999999999999986432   233333 66779999999


Q ss_pred             cCC
Q 024245          262 RNP  264 (270)
Q Consensus       262 ~~g  264 (270)
                      .++
T Consensus       221 ~~~  223 (376)
T KOG1188|consen  221 SKK  223 (376)
T ss_pred             cCC
Confidence            887

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.77  E-value=3.2e-17  Score=128.95  Aligned_cols=209  Identities=19%  Similarity=0.257  Sum_probs=135.2

Q ss_pred             ccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc--------------------ee-------EEEeecCC--C
Q 024245           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR--------------------TV-------SSSWVHSA--A   62 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~--------------------~~-------~~~~~~~~--~   62 (270)
                      .+.||+..|.+++|.| +...+++|++||.|.|||+.-..                    +.       ..-..+..  .
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            3889999999999999 55689999999999999986321                    00       00011111  0


Q ss_pred             cceEEEEEeeCCCCCEEEEEeC-CCcEEEEEccCCccCC----CCccceecc---cceEEEEeeccCCcc-ceecCCCCc
Q 024245           63 HGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGLSS----NPSLTIKTN---SYHFCKLSLVKEPYA-NAKQANEPK  133 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~  133 (270)
                      ..|+.+.| .  |...|++++. |+.|+|||+++.....    .....++.+   ......+..+..... ......+.+
T Consensus       219 ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI  295 (720)
T KOG0321|consen  219 SSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI  295 (720)
T ss_pred             eeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence            22444554 4  5589998887 9999999998765322    112222222   233344444443232 233345566


Q ss_pred             eEEEeccCc-eeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCce
Q 024245          134 DCYEREVGE-TVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (270)
Q Consensus       134 ~~~~~~~~~-~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~  206 (270)
                      ..|++.... .+...+.++..      -..+|++.+++  +|+.|...++|.+.+.+.--.+..       ||.    ..
T Consensus       296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~-------Ght----~e  362 (720)
T KOG0321|consen  296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLL-------GHT----RE  362 (720)
T ss_pred             EEEeccccCcCchhhccCcccceeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhh-------Ccc----eE
Confidence            667776543 33334444444      56789998765  788899999999987664433332       673    46


Q ss_pred             eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      +.+++ |.|.. ..  -++|++.|-.+++|++..+
T Consensus       363 Vt~V~-w~pS~-~t--~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  363 VTTVR-WLPSA-TT--PVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EEEEe-ecccc-CC--CceeeccCcceEEEeccCc
Confidence            77787 88863 23  5888899999999999763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.77  E-value=1.6e-16  Score=122.03  Aligned_cols=197  Identities=19%  Similarity=0.341  Sum_probs=149.3

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCC--------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      -+.+.||...|.||+.+|+...+++|-.-|        .+++||..+-..+..+....  ..|.+++|++.+.|.+|...
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEEe
Confidence            355779999999999999988888876555        49999988888887777555  66999999998778877654


Q ss_pred             --eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245           83 --GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (270)
Q Consensus        83 --~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  160 (270)
                        +.+..+.+||...+....    ..+......  +.                                    ..|.|.+
T Consensus       175 D~s~~h~lSVWdWqk~~~~~----~vk~sne~v--~~------------------------------------a~FHPtd  212 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLG----PVKTSNEVV--FL------------------------------------ATFHPTD  212 (626)
T ss_pred             cCCCccccchhhchhhhccC----cceeccceE--EE------------------------------------EEeccCC
Confidence              456688999998775433    111111110  00                                    3589999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .++++++|  .+.+.+|+++.+...++..        -........+.+++ |.++   |  -++||.++|.|.||+..+
T Consensus       213 ~nliit~G--k~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---g--dviTgDS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  213 PNLIITCG--KGHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---G--DVITGDSGGNILIWSKGT  276 (626)
T ss_pred             CcEEEEeC--CceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---C--CEEeecCCceEEEEeCCC
Confidence            99988665  4899999999887655433        12222447899998 9984   5  499999999999999987


Q ss_pred             CCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       .+..+....|.+.|.+++.-.+|.+||
T Consensus       277 -~~~~k~~~aH~ggv~~L~~lr~GtllS  303 (626)
T KOG2106|consen  277 -NRISKQVHAHDGGVFSLCMLRDGTLLS  303 (626)
T ss_pred             -ceEEeEeeecCCceEEEEEecCccEee
Confidence             555555559999999999999999988

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=1.8e-17  Score=131.39  Aligned_cols=199  Identities=19%  Similarity=0.222  Sum_probs=140.9

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .++.|.||...|++++.+|+|+++||+...     ..|++|+..+...++.+.+|.  -.|+.|+|+|  ++.+|++++.
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSp--dg~~LLsvsR  592 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSP--DGRYLLSVSR  592 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc--eEEEEEEECC--CCcEEEEeec
Confidence            467889999999999999999999998764     359999999988888999999  5699999999  9999999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  164 (270)
                      |+++.+|.........   +.+.....+.                   ..+|+                ..|+|++.+++
T Consensus       593 DRt~sl~~~~~~~~~e---~~fa~~k~Ht-------------------RIIWd----------------csW~pde~~Fa  634 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKDE---FRFACLKAHT-------------------RIIWD----------------CSWSPDEKYFA  634 (764)
T ss_pred             CceEEeeeeecccchh---hhhccccccc-------------------eEEEE----------------cccCcccceeE
Confidence            9999999985443211   1111111111                   11222                34899998743


Q ss_pred             EEecCCCceEEEEeCCCc--ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCC
Q 024245          165 AVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~  241 (270)
                        +++.|.+|++|.....  +.+..+..          ......+++++ |.|.....+ ..++.|-+.|.|.+|.....
T Consensus       635 --TaSRDK~VkVW~~~~~~d~~i~~~a~----------~~~~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~~  701 (764)
T KOG1063|consen  635 --TASRDKKVKVWEEPDLRDKYISRFAC----------LKFSLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKRE  701 (764)
T ss_pred             --EecCCceEEEEeccCchhhhhhhhch----------hccCCceeeEE-eeccccccccceEEEEecccEEEEEecccc
Confidence              7889999999998877  33333221          11244666776 776422221 27889999999999996511


Q ss_pred             Cc-----------ceeeeeccCCCeeEEEeecC
Q 024245          242 GI-----------PLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       242 ~~-----------~~~~~~~~~~~v~~~~~s~~  263 (270)
                      .+           ......+|...|+.+.|+|.
T Consensus       702 ~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  702 HRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             cccccceeeeeccccccccChHHhhheeEeccc
Confidence            11           11122356788999999975

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=2.8e-17  Score=117.91  Aligned_cols=187  Identities=18%  Similarity=0.223  Sum_probs=137.1

Q ss_pred             ccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCce---eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      +.+++++..|+. +.+++.+.|-|-+..|||++++..   ...+-.|.  ..|..++|... ..+.+++++.||.+|+||
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~-s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKG-SRDVFASVGADGSVRMFD  225 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC--cceeEEEeccC-ccceEEEecCCCcEEEEE
Confidence            567899999998 778999999999999999998733   44566788  45999999982 236789999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      ++..+...  +..- .......                            .++        ++|++...+++++-+....
T Consensus       226 LR~leHST--IIYE-~p~~~~p----------------------------LlR--------LswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  226 LRSLEHST--IIYE-DPSPSTP----------------------------LLR--------LSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ecccccce--EEec-CCCCCCc----------------------------cee--------eccCcCCchHHhhhhcCCc
Confidence            99765321  1100 0000000                            000        5577777777776676678


Q ss_pred             eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc-----cee
Q 024245          173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PLT  246 (270)
Q Consensus       173 ~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----~~~  246 (270)
                      .|.|.|+|.. .++.++.        +|.    +.+..++ |.|..+  . .|.+++.|..+.+||+.....     ++.
T Consensus       267 ~V~iLDiR~P~tpva~L~--------~H~----a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLR--------NHQ----ASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             eEEEEEecCCCcceehhh--------cCc----ccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCchh
Confidence            8999999864 4677777        774    4677777 999733  3 899999999999999986433     444


Q ss_pred             eeeccCCCeeEEEeec
Q 024245          247 AMKVHLEPGLECSMWR  262 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~  262 (270)
                      .+. -.+.|+.+.|++
T Consensus       331 ay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  331 AYT-AGGEVNQIQWSS  345 (364)
T ss_pred             hhh-ccceeeeeeecc
Confidence            444 357899999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=125.81  Aligned_cols=173  Identities=17%  Similarity=0.188  Sum_probs=119.4

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---------CceeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------HRTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (270)
                      .+++..+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+-.         -++.+.+..|.  -+|+.+...+-....+
T Consensus       113 G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht--lsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  113 GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT--LSITDLQIGSGGTNAR  190 (476)
T ss_pred             ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc--ceeEEEEecCCCccce
Confidence            467788899999999999999999999999999999998742         35777888888  6699999887222368


Q ss_pred             EEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccC---------------c
Q 024245           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVG---------------E  142 (270)
Q Consensus        79 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~  142 (270)
                      |+|+|.|.++++||+..+.++.    ++. .+....++.++......+.... +.+...++...               .
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLl----ti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~  265 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLL----TIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN  265 (476)
T ss_pred             EEEecCCceEEEEEeccceeeE----EEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc
Confidence            9999999999999999997644    221 1222222333322222222111 11111111110               1


Q ss_pred             eeeeccCCCCC------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          143 TVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       143 ~~~~~~~~~~~------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .....+.||..      ++++-||..|+  +|+.||.|.|||+.+.++++++.
T Consensus       266 t~~~~~~Gh~~~~~ITcLais~DgtlLl--SGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  266 TQINVLVGHENESAITCLAISTDGTLLL--SGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             ceeeeeccccCCcceeEEEEecCccEEE--eeCCCCCEEEEecchHHHHHHHh
Confidence            12224455554      88999997443  89999999999999999998887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=3.3e-17  Score=125.59  Aligned_cols=224  Identities=13%  Similarity=0.120  Sum_probs=147.2

Q ss_pred             cEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        20 ~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .+.++.|+.... .+++-+.|..+++|.-.... .+..+....+ +.-.|++...  ...++++|+..+.|+|||++...
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhhhh--cceeeeccCcCceeeehhhHHHH
Confidence            488999988653 34555678889999744320 1111111111 1234444444  33689999999999999999654


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCc
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~  172 (270)
                      +.+    .++++...+..+...+......... ++.+.+..+.++........+...    +.|+|..+.+|. +.+++|
T Consensus       113 ~hr----~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~-~asd~G  187 (673)
T KOG4378|consen  113 IHR----FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS-IASDKG  187 (673)
T ss_pred             Hhh----hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE-eeccCC
Confidence            433    5666666666566555555444443 333333444443322211111111    789999887776 566799


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      .|.+||+....++..+..       .|..+    +..++ |+|.  +.. +|++.+.|..|.+||.+. .+....+. ..
T Consensus       188 ~VtlwDv~g~sp~~~~~~-------~HsAP----~~gic-fsps--ne~-l~vsVG~Dkki~~yD~~s-~~s~~~l~-y~  250 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASE-------AHSAP----CRGIC-FSPS--NEA-LLVSVGYDKKINIYDIRS-QASTDRLT-YS  250 (673)
T ss_pred             eEEEEeccCCCcccchhh-------hccCC----cCcce-ecCC--ccc-eEEEecccceEEEeeccc-ccccceee-ec
Confidence            999999998888777765       67554    44444 9996  444 999999999999999997 66666665 46


Q ss_pred             CCeeEEEeecCCCcee
Q 024245          253 EPGLECSMWRNPITMS  268 (270)
Q Consensus       253 ~~v~~~~~s~~g~~ls  268 (270)
                      .+...++|+++|.+|.
T Consensus       251 ~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLC  266 (673)
T ss_pred             CCcceeeecCCceEEE
Confidence            7899999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=7e-16  Score=111.62  Aligned_cols=207  Identities=13%  Similarity=0.175  Sum_probs=135.6

Q ss_pred             cccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCC-------c--eeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245           10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH-------R--TVSSSWVHSAAHGIVSVATGPSIGLNK   78 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~-------~--~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (270)
                      +-...+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-...       +  ...++....  ..|+.+.|.|.+-|-.
T Consensus        51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLK  128 (361)
T ss_pred             EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchhcceE
Confidence            3456788999999999977  7899999999999999985211       1  223344344  6799999999877889


Q ss_pred             EEEEeCCCcEEEEEccCCccCCCCcc--cee---cc--cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC
Q 024245           79 VISQGRDGTVKCWDIENGGLSSNPSL--TIK---TN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        79 l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (270)
                      |++++.||.+|||+.........-.+  .+.   ..  .....++.                                  
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C----------------------------------  174 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC----------------------------------  174 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE----------------------------------
Confidence            99999999999998754322110000  000   00  00000011                                  


Q ss_pred             CCeEecCC--CCeEEEEecCCC-----ceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          152 SKDDVPAE--GPKYMAVAGEQL-----SEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       152 ~~~~~s~~--~~~~~~~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                        +.|+|.  .+.+++ .|+.+     +.++||....+.    .+.++.        +|    ...+.+++ |.|+-...
T Consensus       175 --vsWn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--------d~----~dpI~di~-wAPn~Gr~  238 (361)
T KOG2445|consen  175 --VSWNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--------DH----TDPIRDIS-WAPNIGRS  238 (361)
T ss_pred             --EeeccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehhcC--------CC----CCcceeee-eccccCCc
Confidence              223322  123444 34433     378888776543    223333        45    45677887 99973322


Q ss_pred             ceEEEEecCCCcEEEEEcCCCC-------------------cceeeeeccCCCeeEEEeecCCCceec
Q 024245          221 FVNVLAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPGLECSMWRNPITMSE  269 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~g~~ls~  269 (270)
                      ..+||+++.|| |+||.++...                   +.+..+.+|++.|+.++|+-.|..||+
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS  305 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS  305 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence            34899999999 9999988311                   234557789999999999999998874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.5e-17  Score=125.19  Aligned_cols=224  Identities=17%  Similarity=0.244  Sum_probs=141.5

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +.+.|.||++-|+|++|+.+|.+|++||.|-.+.|||.-..++++.+. +|.  ..|.++.|-|..+...+++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence            457799999999999999999999999999999999998888777764 677  66999999997666788899999999


Q ss_pred             EEEEccCCccCC------CCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCC--------
Q 024245           89 KCWDIENGGLSS------NPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDS--------  152 (270)
Q Consensus        89 ~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  152 (270)
                      +++|+...+--.      .+......+......+.....  .........+....+|++....-......+.        
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            999998532110      112222222222222222222  2223334445556667665322111111111        


Q ss_pred             -----CeEecCCCCeEEEEecCCCceEEEEeCCCcc------------------eeeeeccCcCCCCCCcccCCC-----
Q 024245          153 -----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------------RCTRLHQNSCGGSPNFSSKGR-----  204 (270)
Q Consensus       153 -----~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~h~~~~~-----  204 (270)
                           .+.++|...+++++ |+.|-..++||.+...                  ++..+.       ++|.....     
T Consensus       200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-------p~hlkn~~gn~~~  271 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-------PGHLKNSQGNLDR  271 (758)
T ss_pred             hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-------CccccCccccccc
Confidence                 17899999988885 5568999999954211                  122222       24431111     


Q ss_pred             --ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          205 --GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       205 --~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                        ..++-+. |+|+   |..+|++-+. ..|+++|+.....+...+
T Consensus       272 ~~~~~t~vt-fnpN---GtElLvs~~g-EhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  272 YITCCTYVT-FNPN---GTELLVSWGG-EHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             ceeeeEEEE-ECCC---CcEEEEeeCC-eEEEEEeecCCCCceeec
Confidence              1244455 9984   5435555554 489999999844444433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=7.8e-17  Score=120.15  Aligned_cols=152  Identities=17%  Similarity=0.229  Sum_probs=115.5

Q ss_pred             EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce
Q 024245           55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD  134 (270)
Q Consensus        55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (270)
                      .+.+|.  ++|..++|+|++| +.|+|||+|.+|.||++..+.+.....       .                       
T Consensus        76 ~v~GHt--~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt-------e-----------------------  122 (472)
T KOG0303|consen   76 LVCGHT--APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT-------E-----------------------  122 (472)
T ss_pred             CccCcc--ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------c-----------------------
Confidence            456787  7799999999855 999999999999999998765443111       0                       


Q ss_pred             EEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeee
Q 024245          135 CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (270)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  210 (270)
                               ....+.+|..    +.|+|...++|+++| .|.+|.+|++.+++.+.++.         |    ...++++
T Consensus       123 ---------pvv~L~gH~rrVg~V~wHPtA~NVLlsag-~Dn~v~iWnv~tgeali~l~---------h----pd~i~S~  179 (472)
T KOG0303|consen  123 ---------PVVELYGHQRRVGLVQWHPTAPNVLLSAG-SDNTVSIWNVGTGEALITLD---------H----PDMVYSM  179 (472)
T ss_pred             ---------ceEEEeecceeEEEEeecccchhhHhhcc-CCceEEEEeccCCceeeecC---------C----CCeEEEE
Confidence                     1113334444    678998888888555 58999999999999888876         4    5689999


Q ss_pred             eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC-eeEEEeecCCCcee
Q 024245          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-GLECSMWRNPITMS  268 (270)
Q Consensus       211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~ls  268 (270)
                      . |+-+   |. +|+|.+.|..|+|||.++ ++.+..-.+|.+. ...+.|-.+|.+++
T Consensus       180 s-fn~d---Gs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  180 S-FNRD---GS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             E-eccC---Cc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceee
Confidence            8 9984   55 999999999999999999 8888777777642 34456666666543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=2e-16  Score=115.17  Aligned_cols=195  Identities=11%  Similarity=0.150  Sum_probs=137.1

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCC------------ceeEEEeecCCCcceEEEEEeeC-----CCCCEEEEEe
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG   83 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~   83 (270)
                      ...+.|+|||..|++-+.|..+.+|++...            +...++....+ ..|..-+|.+.     .+.+++++.+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence            346899999999999999999999998531            11122222222 45888888732     1567899999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .+..|++||.-+++...  .+..-.+....                                   .+...++|+|||.++
T Consensus       131 r~~PIh~wdaftG~lra--Sy~~ydh~de~-----------------------------------taAhsL~Fs~DGeql  173 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEY-----------------------------------TAAHSLQFSPDGEQL  173 (406)
T ss_pred             ccCceeeeecccccccc--chhhhhhHHhh-----------------------------------hhheeEEecCCCCeE
Confidence            99999999999997633  11111111100                                   011116799999988


Q ss_pred             EEEecCCCceEEEEeC-CCcceeeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          164 MAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      ++  | ....|++||+ |.|.....+...      .+ .....+.+.+++ |+|.  +.. .++.|+...++-||.-.. 
T Consensus       174 fa--G-ykrcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a-~sP~--~~~-~~a~gsY~q~~giy~~~~-  239 (406)
T KOG2919|consen  174 FA--G-YKRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFA-FSPM--DSK-TLAVGSYGQRVGIYNDDG-  239 (406)
T ss_pred             ee--c-ccceEEEeeccCCCCCCcchhhh------hcccccccceeeeee-ccCC--CCc-ceeeecccceeeeEecCC-
Confidence            73  5 4789999999 666633332210      11 122356677777 9997  334 899999999999998887 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCce
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..++..+-+|.+.|+.++|.++|..|
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~l  265 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKL  265 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCee
Confidence            88999999999999999999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=7.1e-17  Score=115.88  Aligned_cols=189  Identities=19%  Similarity=0.215  Sum_probs=133.9

Q ss_pred             cccccEEEEEEeCCCC-----EEEEecCCCcEEEEeCCCCce----eEEEee---cCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           16 GHRASVTDVCFHQTKP-----ILFAGTTGGELRIWDTVQHRT----VSSSWV---HSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~-----~l~s~~~dg~i~vwd~~~~~~----~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .|.-+++.+.|.|+..     +||+.+ | .+++|.+...+.    ...+..   ....+++++..|+.. +.+++.+++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence            4888999999999753     566654 3 699999874211    111111   111267999999875 568999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      -|-+..|||++++..-     .                                      ++..+-+|..    ++|...
T Consensus       171 iDTTCTiWdie~~~~~-----~--------------------------------------vkTQLIAHDKEV~DIaf~~~  207 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG-----T--------------------------------------VKTQLIAHDKEVYDIAFLKG  207 (364)
T ss_pred             ccCeEEEEEEeecccc-----c--------------------------------------eeeEEEecCcceeEEEeccC
Confidence            9999999999987210     0                                      0111222222    668888


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEc
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDI  238 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~  238 (270)
                      +..+++++| .||++|+||+|..+-...+..       .  .........++ |++.++  + ++|+-..|. .|.+.|+
T Consensus       208 s~~~FASvg-aDGSvRmFDLR~leHSTIIYE-------~--p~~~~pLlRLs-wnkqDp--n-ymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  208 SRDVFASVG-ADGSVRMFDLRSLEHSTIIYE-------D--PSPSTPLLRLS-WNKQDP--N-YMATFAMDSNKVVILDI  273 (364)
T ss_pred             ccceEEEec-CCCcEEEEEecccccceEEec-------C--CCCCCcceeec-cCcCCc--h-HHhhhhcCCceEEEEEe
Confidence            888888655 599999999997764433332       0  11144677777 888633  3 888887775 5999999


Q ss_pred             CCCCcceeeeeccCCCeeEEEeecCC
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +.+..++..+.+|.+.|+.|+|.|..
T Consensus       274 R~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  274 RVPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             cCCCcceehhhcCcccccceEecCCC
Confidence            99999999999999999999999954

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=5.4e-16  Score=124.07  Aligned_cols=238  Identities=13%  Similarity=0.136  Sum_probs=164.3

Q ss_pred             cccccccccEEEEEEeC-C----------CCEEEEecCCCcEEEEeCCCCceeEEE------------------------
Q 024245           12 AVLRGHRASVTDVCFHQ-T----------KPILFAGTTGGELRIWDTVQHRTVSSS------------------------   56 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~-~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------   56 (270)
                      ..+--|...|+++.--| +          ...+.+++.|++|++||+..+..-.++                        
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            34445888888887655 1          125889999999999999752111000                        


Q ss_pred             -----------eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-
Q 024245           57 -----------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-  124 (270)
Q Consensus        57 -----------~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  124 (270)
                                 ......-++.+++++|  +|++|++|..-|++++|++...+.    ...++.+...+.++...+.... 
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~  516 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTN  516 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhh----hhheecccceeEEEeecCchhhh
Confidence                       0011124699999999  999999999999999999987754    3467777777766666554333 


Q ss_pred             ceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC
Q 024245          125 NAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP  197 (270)
Q Consensus       125 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  197 (270)
                      ..++.++.   +.++|+.....+..++.+|..    +.|...|-+.-+.+++.|..|.+=-.+.......+..       
T Consensus       517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r-------  589 (1080)
T KOG1408|consen  517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR-------  589 (1080)
T ss_pred             HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc-------
Confidence            23344444   445777777788888999888    7888776333333555688765433332222333432       


Q ss_pred             CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec---cCCCeeEEEeecCCCcee
Q 024245          198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~ls  268 (270)
                      +|..-....++.++ ..|+..    ++++++.|..|+|||+.+ ++..+.|++   |.+....+...|.|.||.
T Consensus       590 ~t~t~~ktTlYDm~-Vdp~~k----~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~a  657 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMA-VDPTSK----LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLA  657 (1080)
T ss_pred             cccccccceEEEee-eCCCcc----eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEE
Confidence            33344566788887 888643    999999999999999999 888888875   556777899999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=1.4e-17  Score=134.91  Aligned_cols=230  Identities=16%  Similarity=0.268  Sum_probs=158.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      -++.|.||..+|+|..|...|.++++|+.|..++||.++++.++..+.+|.  +.|+.++.+.  +..++++++.|..|+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~--~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSS--NNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccch--hhhhhhhcccCceEE
Confidence            456788999999999999999999999999999999999999999999999  5599999988  767888999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce--------------eee---------
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--------------VDT---------  146 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---------  146 (270)
                      +|.+..+..    +..+.++...+..+.+....   .....+...+||.+-.-.              +..         
T Consensus       258 vWrl~~~~p----vsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  258 VWRLPDGAP----VSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             EEecCCCch----HHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            999999854    44666666665544443322   223334445555441000              000         


Q ss_pred             ccC--------CCCC--eEecCCC----------CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCce
Q 024245          147 DSL--------CDSK--DDVPAEG----------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (270)
Q Consensus       147 ~~~--------~~~~--~~~s~~~----------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~  206 (270)
                      ...        .|+.  +++...+          ....+ +.-.+-.+.+|++.++...+.+.        +|.+    .
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~  397 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLM--------GHSD----E  397 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence            000        0000  1222111          11111 22234567889988888888777        6744    4


Q ss_pred             eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++.+. ++|-  +-+ ...+++.||...|||+-. +.+++...--...+..-+||+||..++
T Consensus       398 ~yvLd-~Hpf--n~r-i~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  398 VYVLD-VHPF--NPR-IAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             eeeee-ecCC--CcH-hhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEe
Confidence            55555 7775  344 788899999999999998 666655543345677789999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.2e-15  Score=122.93  Aligned_cols=220  Identities=10%  Similarity=0.015  Sum_probs=134.3

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCCc
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGT   87 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~   87 (270)
                      +.+..|...+...+|+|||+.|+.++.+   ..|++||+.+++...... ..  .....++|+|  +|+.|+.+ +.+|.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~--g~~~~~~wSP--DG~~La~~~~~~g~  271 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FR--GHNGAPAFSP--DGSRLAFASSKDGV  271 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CC--CccCceeECC--CCCEEEEEEecCCc
Confidence            4566778889999999999999887654   369999998875433221 11  2245789999  99988765 46887


Q ss_pred             EEEE--EccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC-CCeEecCCCCe
Q 024245           88 VKCW--DIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SKDDVPAEGPK  162 (270)
Q Consensus        88 i~~w--d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  162 (270)
                      +.||  |+.++...     .+.....  ....++.+...........+...+|.+.........+... ....|+|+|+.
T Consensus       272 ~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~  346 (429)
T PRK01742        272 LNIYVMGANGGTPS-----QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKT  346 (429)
T ss_pred             EEEEEEECCCCCeE-----eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCE
Confidence            6666  55554422     1222211  1122222222111122223455667654322111111111 22789999997


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC-C
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-P  241 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~-~  241 (270)
                      ++++ +. ++ +.+||+.+++......        .+      ....+. |+|   ||+ +|+.++.+|.+.+|++.+ .
T Consensus       347 ia~~-~~-~~-i~~~Dl~~g~~~~lt~--------~~------~~~~~~-~sP---dG~-~i~~~s~~g~~~~l~~~~~~  404 (429)
T PRK01742        347 LVMI-NG-DN-VVKQDLTSGSTEVLSS--------TF------LDESPS-ISP---NGI-MIIYSSTQGLGKVLQLVSAD  404 (429)
T ss_pred             EEEE-cC-CC-EEEEECCCCCeEEecC--------CC------CCCCce-ECC---CCC-EEEEEEcCCCceEEEEEECC
Confidence            7653 33 44 6669998887543222        11      113455 999   466 888888899888887632 2


Q ss_pred             CcceeeeeccCCCeeEEEeecC
Q 024245          242 GIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      +.....+..|.+.+...+|+|-
T Consensus       405 G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        405 GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEccCCCCCCCCcccCCC
Confidence            7788888888888999999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.5e-15  Score=104.78  Aligned_cols=222  Identities=14%  Similarity=0.115  Sum_probs=141.9

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCC---------C-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..|.+-+++|.+++|++|+.+|.|.+..+++         + ..+-..++|.  ++|+.++|..    .+|++++ ||.|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd--gpiy~~~f~d----~~Lls~g-dG~V   83 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD--GPIYYLAFHD----DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC--CCeeeeeeeh----hheeecc-CceE
Confidence            4567778999999999999999999999864         1 2333446777  7799999986    6788776 4999


Q ss_pred             EEEEccCCccCC--CCcc----ceec---ccceEEEEeeccCCcccee-cCCCCceEEEeccCceeeeccCCCCC----e
Q 024245           89 KCWDIENGGLSS--NPSL----TIKT---NSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCDSK----D  154 (270)
Q Consensus        89 ~~wd~~~~~~~~--~~~~----~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~  154 (270)
                      +-|..+......  +++.    ..+.   .-..+..+.++........ ...+....||+++++.. ..+.||..    +
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-REYRGHTDYVHSV  162 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-EEEcCCcceeeee
Confidence            999775432100  0111    1111   1122334455544433333 33445566888888654 47888888    3


Q ss_pred             Ee-cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCC-CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          155 DV-PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       155 ~~-s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                      .- +..++ ++  +|++||++||||+++++.+..+..+.-... ..|   ....+.+++ -+.     . +|++|+ ...
T Consensus       163 v~R~~~~q-il--sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~---~g~wigala-~~e-----d-WlvCGg-Gp~  228 (325)
T KOG0649|consen  163 VGRNANGQ-IL--SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD---WGKWIGALA-VNE-----D-WLVCGG-GPK  228 (325)
T ss_pred             eecccCcc-ee--ecCCCccEEEEeccccceeEEeccccChhhcCcc---cCceeEEEe-ccC-----c-eEEecC-CCc
Confidence            33 44454 33  799999999999999999988874321100 011   123455555 332     2 777776 458


Q ss_pred             EEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +.+|.++. .++...+.- ..++..+.|..|-
T Consensus       229 lslwhLrs-se~t~vfpi-pa~v~~v~F~~d~  258 (325)
T KOG0649|consen  229 LSLWHLRS-SESTCVFPI-PARVHLVDFVDDC  258 (325)
T ss_pred             eeEEeccC-CCceEEEec-ccceeEeeeecce
Confidence            99999998 777777763 4566666666553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=1.6e-14  Score=112.97  Aligned_cols=240  Identities=13%  Similarity=0.096  Sum_probs=136.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEe-cCCCcEEEEeCCC-Cce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +.++++. +.+....++++|++++|+++ ..++.|.+|++.. ++.  +.... ..  .....++|+|  ++++|++++.
T Consensus        26 ~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~--~~p~~i~~~~--~g~~l~v~~~   99 (330)
T PRK11028         26 TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP--GSPTHISTDH--QGRFLFSASY   99 (330)
T ss_pred             eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC--CCceEEEECC--CCCEEEEEEc
Confidence            3445554 34567789999999988765 4578899999973 332  22222 11  3467899999  9898887764


Q ss_pred             -CCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceee-------eccCCCCC--
Q 024245           85 -DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------TDSLCDSK--  153 (270)
Q Consensus        85 -d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--  153 (270)
                       ++.|.+|++++..........+... ......++...............+.+|++.....+.       ....+...  
T Consensus       100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~  179 (330)
T PRK11028        100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH  179 (330)
T ss_pred             CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence             8899999997533221111112111 112222222222222223334556778886633221       11112222  


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCC--cc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-c
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-Y  228 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~  228 (270)
                      ++|+|+|++++++ ...+++|.+||+..  ++  .+..+..     .+.. .........+. ++|+   |+ +|+++ .
T Consensus       180 ~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~-----~p~~-~~~~~~~~~i~-~~pd---g~-~lyv~~~  247 (330)
T PRK11028        180 MVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDM-----MPAD-FSDTRWAADIH-ITPD---GR-HLYACDR  247 (330)
T ss_pred             EEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEec-----CCCc-CCCCccceeEE-ECCC---CC-EEEEecC
Confidence            9999999988764 44479999999973  22  2333321     0000 00111233466 8884   55 56655 4


Q ss_pred             CCCcEEEEEcCCCCcceeeeecc---CCCeeEEEeecCCCce
Q 024245          229 EDGSILVWDIRNPGIPLTAMKVH---LEPGLECSMWRNPITM  267 (270)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l  267 (270)
                      .++.|.+|++...+... ++.++   ......++|+|||++|
T Consensus       248 ~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l  288 (330)
T PRK11028        248 TASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYL  288 (330)
T ss_pred             CCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEE
Confidence            57899999997633222 22222   1356789999999876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.6e-15  Score=111.06  Aligned_cols=242  Identities=13%  Similarity=0.202  Sum_probs=160.8

Q ss_pred             CCccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      |+|++.... |...|.|++|....+++++|..+++|.+.|+++.+.+..+......+.|+.+..+|  ..+.|++.+.++
T Consensus        94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~  171 (609)
T KOG4227|consen   94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAK  171 (609)
T ss_pred             CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCc
Confidence            467776654 56899999999999999999999999999999998888876555446799999999  669999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceE--EEEeeccCCccceecCCCCceEEEeccCceeeeccCC-------CCC---e
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHF--CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-------DSK---D  154 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~  154 (270)
                      .|.+||.+.......++. ....+..+  ..+.+............+...+||++..........+       ...   +
T Consensus       172 ~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~  250 (609)
T KOG4227|consen  172 LVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS  250 (609)
T ss_pred             eEEEEeccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence            999999987642221111 11122222  2222222223333444566788998876543322211       111   7


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-C--CceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-G--RGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~--~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      .|+|.|..+++.-  ....-.+||+.+.++. .++.       .|... .  ...+-+++ |.-    .+ .+++|+.+-
T Consensus       251 ~~~~~G~Q~msiR--R~~~P~~~D~~S~R~~-V~k~-------D~N~~GY~N~~T~KS~~-F~~----D~-~v~tGSD~~  314 (609)
T KOG4227|consen  251 LWSPSGNQFMSIR--RGKCPLYFDFISQRCF-VLKS-------DHNPNGYCNIKTIKSMT-FID----DY-TVATGSDHW  314 (609)
T ss_pred             eeCCCCCeehhhh--ccCCCEEeeeecccce-eEec-------cCCCCcceeeeeeeeee-eec----ce-eeeccCccc
Confidence            8999999887532  2344567888764432 2332       23221 1  11222344 653    33 799999999


Q ss_pred             cEEEEEcCCC----C------------------cceeeeeccCCCeeEEEeecCCCcee
Q 024245          232 SILVWDIRNP----G------------------IPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       232 ~i~vwd~~~~----~------------------~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .|++|.+...    +                  ..+..+++|..-++.+.|+|...+|.
T Consensus       315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~  373 (609)
T KOG4227|consen  315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV  373 (609)
T ss_pred             ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence            9999987531    1                  23567889999999999999877664

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=9.2e-16  Score=110.18  Aligned_cols=211  Identities=13%  Similarity=0.178  Sum_probs=139.9

Q ss_pred             EEEEec----CCCcEEEEeCCCC--cee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-------CcEEEEEccCCc
Q 024245           32 ILFAGT----TGGELRIWDTVQH--RTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------GTVKCWDIENGG   97 (270)
Q Consensus        32 ~l~s~~----~dg~i~vwd~~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~   97 (270)
                      .+++|.    .|+.|.+-++..+  +.. +.|..+.  +.|..++-+|. +...|+++..+       ..+.||.+....
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~a--gEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHA--GEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCC--cceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            444554    3677888777653  222 2344455  55999999996 54667766442       247799986543


Q ss_pred             cCC-----CCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC-----CCCC----eEecC--CC
Q 024245           98 LSS-----NPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL-----CDSK----DDVPA--EG  160 (270)
Q Consensus        98 ~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~s~--~~  160 (270)
                      ...     +.+..+... -....++...+............+.+|++.....+...+.     ++..    -+|+|  +|
T Consensus       105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence            210     111222211 1233444444444555555677778888877665322111     1111    67888  45


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      . .+++++  |+++..||+|+.++...+..       +|.    ..+..+. |+|+   .+.+|++|+.||.|++||.++
T Consensus       185 n-qv~tt~--d~tl~~~D~RT~~~~~sI~d-------AHg----q~vrdlD-fNpn---kq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  185 N-QVATTS--DSTLQFWDLRTMKKNNSIED-------AHG----QRVRDLD-FNPN---KQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             c-eEEEeC--CCcEEEEEccchhhhcchhh-------hhc----ceeeecc-CCCC---ceEEEEEcCCCccEEEEeccC
Confidence            4 344333  79999999999998888886       553    3677787 9994   555999999999999999999


Q ss_pred             CCcceeeeeccCCCeeEEEeecC
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ...++..+.+|..+|+++.|+|.
T Consensus       247 tk~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  247 TKFPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             CCccccccCCCceEEEEEEecCc
Confidence            89999999999999999999994

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.5e-16  Score=115.91  Aligned_cols=199  Identities=15%  Similarity=0.101  Sum_probs=137.2

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC------CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      +.+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .++++. .+|.+...|.|++|..  ...++++|.
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~  124 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGE  124 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCC
Confidence            4455789999999999999999999999999999999864      345543 3444447799999998  778899999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .+++|..-|+++.+.+.    .+...........                                    +..+|... .
T Consensus       125 ~~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~------------------------------------m~~~P~DN-~  163 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIY----VANENNNRGDVYH------------------------------------MDQHPTDN-T  163 (609)
T ss_pred             CcceeEeeecccceeee----eecccCcccceee------------------------------------cccCCCCc-e
Confidence            99999999999875432    1111110000000                                    33566654 4


Q ss_pred             EEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++ +.+.++.|.+||.+... .+..+..       +.   .......+. |+|..+  + +|++.++.+-+.+||.+.+.
T Consensus       164 ~~-~~t~~~~V~~~D~Rd~~~~~~~~~~-------AN---~~~~F~t~~-F~P~~P--~-Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  164 LI-VVTRAKLVSFIDNRDRQNPISLVLP-------AN---SGKNFYTAE-FHPETP--A-LILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             EE-EEecCceEEEEeccCCCCCCceeee-------cC---CCccceeee-ecCCCc--e-eEEeccccCCCCceeecccc
Confidence            44 34568999999998765 3332221       11   222344555 999744  3 89999999999999999876


Q ss_pred             cceeeeeccCC------CeeEEEeecCCCce
Q 024245          243 IPLTAMKVHLE------PGLECSMWRNPITM  267 (270)
Q Consensus       243 ~~~~~~~~~~~------~v~~~~~s~~g~~l  267 (270)
                      .++....+..+      .-.++.|+|+|..+
T Consensus       229 ~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~  259 (609)
T KOG4227|consen  229 RPVYQRSMFKGLPQENTEWMGSLWSPSGNQF  259 (609)
T ss_pred             chHHhhhccccCcccchhhhheeeCCCCCee
Confidence            66554443321      22568899998765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=1.1e-15  Score=111.08  Aligned_cols=195  Identities=12%  Similarity=0.160  Sum_probs=139.3

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .+.--.++|+|.+|++|+..+|.+-....|.||.....   +..+++..|.  ..|+.|.|+|  ..+.|++++.|..-.
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap--~snrIvtcs~drnay   80 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAP--KSNRIVTCSHDRNAY   80 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC--cceeEEeecC--CCCceeEccCCCCcc
Confidence            34445679999999999999999999999999998764   4677888888  6699999999  889999999999999


Q ss_pred             EEEcc-CCccCCCCccceec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           90 CWDIE-NGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        90 ~wd~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      +|... .++...  .+.+-. +....+                                       +.|+|.+..+.  +
T Consensus        81 Vw~~~~~~~Wkp--tlvLlRiNrAAt~---------------------------------------V~WsP~enkFA--V  117 (361)
T KOG1523|consen   81 VWTQPSGGTWKP--TLVLLRINRAATC---------------------------------------VKWSPKENKFA--V  117 (361)
T ss_pred             ccccCCCCeecc--ceeEEEeccceee---------------------------------------EeecCcCceEE--e
Confidence            99984 443322  222111 111111                                       56999987655  4


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcc-cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc-----CCC
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI-----RNP  241 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~-----~~~  241 (270)
                      |+....|.||-++..+--..-+         |. .+++..+.++. |+|+   +- +|++|+.|+..+++..     +..
T Consensus       118 gSgar~isVcy~E~ENdWWVsK---------hikkPirStv~sld-Whpn---nV-LlaaGs~D~k~rVfSayIK~Vdek  183 (361)
T KOG1523|consen  118 GSGARLISVCYYEQENDWWVSK---------HIKKPIRSTVTSLD-WHPN---NV-LLAAGSTDGKCRVFSAYIKGVDEK  183 (361)
T ss_pred             ccCccEEEEEEEecccceehhh---------hhCCccccceeeee-ccCC---cc-eecccccCcceeEEEEeeeccccC
Confidence            5556889998877544221111         11 23577899998 9995   33 9999999999999853     210


Q ss_pred             ------------CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 ------------GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ------------~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                                  ++.+..+....+.|..+.|+|+|..|.
T Consensus       184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence                        223444444567899999999998874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.8e-15  Score=114.95  Aligned_cols=205  Identities=8%  Similarity=0.119  Sum_probs=149.8

Q ss_pred             cccccccc-ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           11 VAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        11 ~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      +..+.|++ ..+.....+|++++|+..+..|.|.+-...+++.+..++..   +.|..++|+.  ++..|++++.+|.|.
T Consensus       295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsS--dsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSS--DSKELLASGGTGEVY  369 (514)
T ss_pred             ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEec--CCcEEEEEcCCceEE
Confidence            34444554 46778889999999999999999999999999999988866   6699999998  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee--------cc----CCCCCeEec
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--------DS----LCDSKDDVP  157 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~s  157 (270)
                      +||++...++.    .+... ......+++.+.....++.|+..+++++...+....        .+    .+-..+.|+
T Consensus       370 v~nl~~~~~~~----rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  370 VWNLRQNSCLH----RFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             EEecCCcceEE----EEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence            99999986654    22221 122233444444455667776666666655332211        11    111118999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ++++.|.+++...+..+++-.+.+......++.        - +..-+.+.+++ |+|.+.    +|+.|..+|.|.+|.
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~--------~-n~~vg~vtc~a-FSP~sG----~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT--------S-NTKVGHVTCMA-FSPNSG----YLAVGNEAGRVHLFK  510 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeeccCCC--------C-CCcccceEEEE-ecCCCc----eEEeecCCCceeeEe
Confidence            999877776666788999999988777766663        1 33456788998 999633    999999999999998


Q ss_pred             cC
Q 024245          238 IR  239 (270)
Q Consensus       238 ~~  239 (270)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            75

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.69  E-value=9.6e-16  Score=114.67  Aligned_cols=170  Identities=17%  Similarity=0.186  Sum_probs=122.6

Q ss_pred             cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc---------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ..+|..+.|.++.. .++||+.|..|++|.++.+.         -...+..|.  ..|+++.|+|  +|++|+||+.+|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~--~aVN~vRf~p--~gelLASg~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT--RAVNVVRFSP--DGELLASGGDGGE   88 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc--ceeEEEEEcC--CcCeeeecCCCce
Confidence            46899999999766 99999999999999986542         223456677  5599999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      |.+|....-.     +..... ...     ..                   .....+...+.+|..    ++|+|++..+
T Consensus        89 v~lWk~~~~~-----~~~~d~-e~~-----~~-------------------ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   89 VFLWKQGDVR-----IFDADT-EAD-----LN-------------------KEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             EEEEEecCcC-----Cccccc-hhh-----hC-------------------ccceEEEEEecccccchhhhhccCCCcee
Confidence            9999876411     110000 000     00                   001123334455555    8999999755


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +  +++.|.++++||+..|+....+.        .|..    .+..++ |.|-   ++ ++++-+.|...+.+.+..
T Consensus       139 ~--s~s~dns~~l~Dv~~G~l~~~~~--------dh~~----yvqgva-wDpl---~q-yv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  139 V--SGSVDNSVRLWDVHAGQLLAILD--------DHEH----YVQGVA-WDPL---NQ-YVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             e--eeeccceEEEEEeccceeEeecc--------cccc----ccceee-cchh---hh-hhhhhccCcccceeeeee
Confidence            4  67789999999999999998887        5643    555565 8885   34 889888888777776654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.3e-15  Score=110.81  Aligned_cols=189  Identities=11%  Similarity=0.108  Sum_probs=117.3

Q ss_pred             EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC-CC-ccceecccceEEEEeeccCCccceecCCCC
Q 024245           55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS-NP-SLTIKTNSYHFCKLSLVKEPYANAKQANEP  132 (270)
Q Consensus        55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (270)
                      .+++|.  +.|++++|+.  +|+.|++++.|++|++|+++.-.... +. ...++........++.+..........+..
T Consensus        81 ~LKgH~--~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   81 VLKGHK--KEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhccC--CceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            567888  5599999999  99999999999999999997633211 00 011122222223344444333344444444


Q ss_pred             ceEEEeccCce---ee-ec------c-CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC
Q 024245          133 KDCYEREVGET---VD-TD------S-LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP  197 (270)
Q Consensus       133 ~~~~~~~~~~~---~~-~~------~-~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  197 (270)
                      ...|.+...+.   .. ..      + ..|..    +...-.+. ++ .+++.|..|.||+++ |+.+..+..       
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~i-msas~dt~i~lw~lk-Gq~L~~idt-------  226 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YI-MSASLDTKICLWDLK-GQLLQSIDT-------  226 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EE-EEecCCCcEEEEecC-Cceeeeecc-------
Confidence            45554332211   00 00      0 11111    23333443 33 367789999999999 888888773       


Q ss_pred             CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC--C-----cceeeeeccCCCeeEEEeecCCCce
Q 024245          198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP--G-----IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       .    ...-... +.+|   +|+ ++++++..-.|++|..--.  +     ..+..++||++.|+.++||++...+
T Consensus       227 -n----q~~n~~a-avSP---~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~  293 (420)
T KOG2096|consen  227 -N----QSSNYDA-AVSP---DGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA  293 (420)
T ss_pred             -c----cccccce-eeCC---CCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee
Confidence             1    1112222 4888   577 9999999999999986321  1     2567789999999999999987664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=1.9e-14  Score=106.64  Aligned_cols=219  Identities=13%  Similarity=0.137  Sum_probs=149.2

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIEN   95 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~   95 (270)
                      ...+..+.|+.+...|..|+.|| .++++.+............  ..|.-+-|+.    .+++..+.+.  .+++.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~--~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEG--VSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCC--eEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence            45677788999999999999998 8888887644322222122  4466777776    5766555544  488888887


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC--CCC--eEecCCCC--eEEEEecC
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC--DSK--DDVPAEGP--KYMAVAGE  169 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~s~~~~--~~~~~~~~  169 (270)
                      +..+.       ........+++..........-.....++|+.+-+.+......  +..  ++++++..  ++..-...
T Consensus        78 ~~~IC-------e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   78 KTTIC-------EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             CceEE-------EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence            65433       1111112222222333333333444788899888877654444  222  67776543  55543444


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc-EEEEEcCCCCcceeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAM  248 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~-i~vwd~~~~~~~~~~~  248 (270)
                      ..|.|.|||+.+-+.+..+.        .|    .+.+-+++ |+|+   |. +|||+++.|+ |||+.+.+ ++.+..|
T Consensus       151 t~GdV~l~d~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eF  212 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEF  212 (391)
T ss_pred             CCceEEEEEcccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeee
Confidence            56899999999999999998        67    45677887 9995   55 9999999997 89999999 8888877


Q ss_pred             eccC--CCeeEEEeecCCCcee
Q 024245          249 KVHL--EPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ~~~~--~~v~~~~~s~~g~~ls  268 (270)
                      ..-.  ..|.+++|+||+++|.
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEE
Confidence            6422  4678999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=116.44  Aligned_cols=200  Identities=16%  Similarity=0.150  Sum_probs=129.9

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCceeEEEe--ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc
Q 024245           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT  105 (270)
Q Consensus        28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  105 (270)
                      +.+--|..|-.-|.|++.|....+..+.+.  .+..+..|+++.|-|- +...++.+-.+|.+.+||.+-..-...|...
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCccc
Confidence            345567777778889998876532222121  1222266999999995 3356677788999999988432222222222


Q ss_pred             eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      .......+........      ........|.+..+.        -...+|+|||++|.  +-+.||.+||||..+.+++
T Consensus       262 ~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~--------in~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSK------KTRNPVARWHIGEGS--------INEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELL  325 (636)
T ss_pred             ccCCCCeeEEeeeecc------ccCCccceeEecccc--------ccceeEcCCCceEE--EEecCceEEEeeccHHHHH
Confidence            2222111111110000      000112222222221        11188999998665  4457999999999998887


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      ..++.            .-+..++++ |+|   ||+ ||++|++|..|.||.+.. ++.+..-++|+++|..++|.|
T Consensus       326 g~mkS------------YFGGLLCvc-WSP---DGK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  326 GVMKS------------YFGGLLCVC-WSP---DGK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHh------------hccceEEEE-EcC---Ccc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence            77662            245678887 999   566 999999999999999998 899999999999999999996

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=3.2e-15  Score=118.96  Aligned_cols=207  Identities=14%  Similarity=0.172  Sum_probs=126.3

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--------eeEEE----------------------
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--------TVSSS----------------------   56 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~----------------------   56 (270)
                      -...+++++||++.|+|++|+.||+.+|+|+.|..|.+|+.+-.-        .++..                      
T Consensus        42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~  121 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSP  121 (1081)
T ss_pred             CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccCh
Confidence            345789999999999999999999999999999999999865311        11111                      


Q ss_pred             -----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec---
Q 024245           57 -----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ---  128 (270)
Q Consensus        57 -----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  128 (270)
                           ..+.....|.+.+|..  ||++|+-|-.+|+|.+-+-......   ...-++. .....+++.+.+......   
T Consensus       122 ~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek~---~I~Rpgg-~Nspiwsi~~~p~sg~G~~di  195 (1081)
T KOG1538|consen  122 EQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEKV---KIERPGG-SNSPIWSICWNPSSGEGRNDI  195 (1081)
T ss_pred             hhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcce---EEeCCCC-CCCCceEEEecCCCCCCccce
Confidence                 0011113466666666  8999999999999988754432211   1111111 111223333322221000   


Q ss_pred             -----CCCCceEEEeccCceee-eccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245          129 -----ANEPKDCYEREVGETVD-TDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (270)
Q Consensus       129 -----~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~  200 (270)
                           .+....++.+ .++.+. ..-.+-..  +.+.++|+++++  |+.|+.+++|-. .|-.+.++..          
T Consensus       196 ~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~fTR-~GvrLGTvg~----------  261 (1081)
T KOG1538|consen  196 LAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLFTR-DGVRLGTVGE----------  261 (1081)
T ss_pred             EEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEEee-cCeEEeeccc----------
Confidence                 0000111111 111111 11111122  677799998885  555899999964 4666666542          


Q ss_pred             cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                        ...++|.++ ..|   +++ +++.|+.||+|-.|++-.
T Consensus       262 --~D~WIWtV~-~~P---NsQ-~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  262 --QDSWIWTVQ-AKP---NSQ-YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             --cceeEEEEE-Ecc---CCc-eEEEEEccCeeehhhhHH
Confidence              456899998 999   466 999999999999998753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.4e-14  Score=113.70  Aligned_cols=223  Identities=14%  Similarity=0.146  Sum_probs=159.7

Q ss_pred             cccccc-cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           12 AVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        12 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+.|+ ...|.+++|++.+ .|++.+.+|.|.-||+.+++.+..+....  +.|++++.+|  .+..++.|+.||.+..
T Consensus        62 ~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~g--g~IWsiai~p--~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNG--GAIWSIAINP--ENTILAIGCDDGVLYD  136 (691)
T ss_pred             EEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCC--cceeEEEeCC--ccceEEeecCCceEEE
Confidence            445555 4689999999655 67788889999999999999999888777  6699999999  8789999999998888


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeee------ccCCCCC-eEec---
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDT------DSLCDSK-DDVP---  157 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~-~~~s---  157 (270)
                      ++...+++..    ...-.......+++.+.+...-+..|+.   +.+||...+..+..      .+..... +.|+   
T Consensus       137 ~s~~p~~I~~----~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~  212 (691)
T KOG2048|consen  137 FSIGPDKITY----KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF  212 (691)
T ss_pred             EecCCceEEE----EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence            8887776532    1111122345577777777764444444   55688887776551      1111122 4443   


Q ss_pred             -CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          158 -AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       158 -~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                       .++.  ++ +|..-|+|++||...+.+++.+.        .|    ...+.+++ -.+++   . ++++++.|+.|..+
T Consensus       213 Lrd~t--I~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~---d-~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  213 LRDST--IA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNE---D-RVFSAGVDPKIIQY  272 (691)
T ss_pred             eecCc--EE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCC---C-eEEEccCCCceEEE
Confidence             5553  33 78888999999999999999888        56    34577776 66643   3 89999999999999


Q ss_pred             EcCCCCc---ceeeeeccCCCeeEEEeecC
Q 024245          237 DIRNPGI---PLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       237 d~~~~~~---~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ...+.+.   .......|...|.+++..++
T Consensus       273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             EecCCccceeeeccccCCcccceeeeeecc
Confidence            8877433   22233467778888888776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=3.5e-15  Score=113.32  Aligned_cols=234  Identities=11%  Similarity=0.089  Sum_probs=151.7

Q ss_pred             cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      -+..+..|..+|.+|.|+| +...+++.|+||+|++-|+++...-..+........+..+.|+.  +...++.+..=|.+
T Consensus       226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f  303 (498)
T KOG4328|consen  226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNF  303 (498)
T ss_pred             ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccce
Confidence            4566778999999999999 55689999999999999999764433333323335577888887  65667777766799


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceee---eccCCCCC----eEecCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAE  159 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~  159 (270)
                      .+||.+++....   ..+.-+...++.+.+.....  ...........+||++.-....   .....|..    ..|||.
T Consensus       304 ~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  304 NVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS  380 (498)
T ss_pred             EEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence            999999876422   12222222333333333222  2233334455679987654333   22334444    889999


Q ss_pred             CCeEEEEecCCCceEEEEeCC----CcceeeeeccCcCCCCCCcccCC--CceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKG--RGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      +..+ + +.+.|..|+|||..    .-.+..++.         |....  .-...... |.|+.+    ++++|..-..|
T Consensus       381 ~gtl-~-TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA~-W~P~~~----li~vg~~~r~I  444 (498)
T KOG4328|consen  381 GGTL-L-TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKAA-WDPDYN----LIVVGRYPRPI  444 (498)
T ss_pred             CCce-E-eeccCCceEEeecccccccCCccceee---------ccCcccccccchhhe-eCCCcc----EEEEeccCcce
Confidence            9884 4 45569999999983    334455554         33221  22233444 999644    99999999999


Q ss_pred             EEEEcCCCCcceeeeeccC-CCeeE-EEeecCCC
Q 024245          234 LVWDIRNPGIPLTAMKVHL-EPGLE-CSMWRNPI  265 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~-~~v~~-~~~s~~g~  265 (270)
                      -|+|-.. ++.+..+.... ..|.+ ..|+|-+.
T Consensus       445 Dv~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~  477 (498)
T KOG4328|consen  445 DVFDGNG-GQMVCELHDPESSTIPSVNEFHPMRD  477 (498)
T ss_pred             eEEcCCC-CEEeeeccCccccccccceeeccccc
Confidence            9999887 77666654433 24554 57888665

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.2e-14  Score=99.01  Aligned_cols=224  Identities=14%  Similarity=0.209  Sum_probs=148.5

Q ss_pred             CCCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce------eEE--EeecCC---CcceEEEEEee
Q 024245            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSS--SWVHSA---AHGIVSVATGP   72 (270)
Q Consensus         4 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~------~~~--~~~~~~---~~~v~~~~~~~   72 (270)
                      .|+...++...++|.++|+.++|.  ..+|++|+ ||.|+=|.......      +..  ...+..   --.|+++...|
T Consensus        48 ~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP  124 (325)
T KOG0649|consen   48 EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP  124 (325)
T ss_pred             CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence            444456777789999999999998  34777776 49999998764321      111  111110   02388999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCCCCceEEEeccCceeeeccC--
Q 024245           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQANEPKDCYEREVGETVDTDSL--  149 (270)
Q Consensus        73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (270)
                        ..+-++.++.|+.+..||+++|+..+    .++++....-++.. ...+........+..++||.++.+.+...-.  
T Consensus       125 --~enSi~~AgGD~~~y~~dlE~G~i~r----~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  125 --SENSILFAGGDGVIYQVDLEDGRIQR----EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             --CCCcEEEecCCeEEEEEEecCCEEEE----EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence              66677777799999999999998765    67777665544433 3344445555677788999999887654322  


Q ss_pred             ------CCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          150 ------CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       150 ------~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                            .|..   .++.-+...++  +|. ...+.+|.+++.++...|.             +...+-.+. |.-+    
T Consensus       199 ~~~~lRp~~g~wigala~~edWlv--CGg-Gp~lslwhLrsse~t~vfp-------------ipa~v~~v~-F~~d----  257 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVNEDWLV--CGG-GPKLSLWHLRSSESTCVFP-------------IPARVHLVD-FVDD----  257 (325)
T ss_pred             ChhhcCcccCceeEEEeccCceEE--ecC-CCceeEEeccCCCceEEEe-------------cccceeEee-eecc----
Confidence                  1111   45555666554  554 5789999999999988887             233455555 7643    


Q ss_pred             ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s  261 (270)
                        .++++++.+.|.-|.+.  +......++.+...++..|+
T Consensus       258 --~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c~s~s~~  294 (325)
T KOG0649|consen  258 --CVLIGGEGNHVQSYTLN--GVLQANIPVESTACYSASWQ  294 (325)
T ss_pred             --eEEEeccccceeeeeec--cEEEEeccCCccceeeeccc
Confidence              78888888899999876  44433344333344444444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=1.3e-15  Score=120.41  Aligned_cols=184  Identities=16%  Similarity=0.239  Sum_probs=126.1

Q ss_pred             eCCCCEEEE--ecCCCcEEEEeCCCC-cee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC--
Q 024245           27 HQTKPILFA--GTTGGELRIWDTVQH-RTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS--  100 (270)
Q Consensus        27 s~~~~~l~s--~~~dg~i~vwd~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--  100 (270)
                      +.+..++|.  ++.-|.|-||+++.. +.- ..+.+-.....|+.+.|.|+ |...|+.++.||.|++|.+..+....  
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCccc
Confidence            334445544  455789999999753 211 11111111155999999998 55899999999999999998765432  


Q ss_pred             -CCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeC
Q 024245          101 -NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (270)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~  179 (270)
                       .|...+..+...++.                                      +.|+|-...+++ ++++|-+|+|||+
T Consensus       667 ~tPe~~lt~h~eKI~s--------------------------------------lRfHPLAadvLa-~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITS--------------------------------------LRFHPLAADVLA-VASYDSTIELWDL  707 (1012)
T ss_pred             CCcceeeecccceEEE--------------------------------------EEecchhhhHhh-hhhccceeeeeeh
Confidence             111111122111111                                      447776666666 5678999999999


Q ss_pred             CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC-CeeEE
Q 024245          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PGLEC  258 (270)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~  258 (270)
                      ++++....+.        ||.    +.+..++ |+|   +|+ .+++.+.||+|++|+-+...++++.-++..+ .--.|
T Consensus       708 ~~~~~~~~l~--------gHt----dqIf~~A-WSp---dGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi  770 (1012)
T KOG1445|consen  708 ANAKLYSRLV--------GHT----DQIFGIA-WSP---DGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI  770 (1012)
T ss_pred             hhhhhhheec--------cCc----CceeEEE-ECC---CCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence            9999988898        784    4688888 999   577 9999999999999999987777766554332 22346


Q ss_pred             EeecCCCce
Q 024245          259 SMWRNPITM  267 (270)
Q Consensus       259 ~~s~~g~~l  267 (270)
                      .|--||++|
T Consensus       771 ~wacdgr~v  779 (1012)
T KOG1445|consen  771 LWACDGRIV  779 (1012)
T ss_pred             EEEecCcEE
Confidence            677777765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.66  E-value=1.4e-14  Score=105.92  Aligned_cols=169  Identities=12%  Similarity=0.184  Sum_probs=123.4

Q ss_pred             cccccccEEEEEEeC-----CCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCC--CCEEEEEe
Q 024245           14 LRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQG   83 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~   83 (270)
                      ..+|..+|..++|++     +...+|+++. ..+.+|.....-   .++.+.....+.....++|+-..+  .-+++.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            456889999999995     2235666665 469999876543   344444333336678888875211  23788888


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .-|.|+|.|+.++++..    .+.++...+..                                      +.+.|+..++
T Consensus       113 ~~GvIrVid~~~~~~~~----~~~ghG~sINe--------------------------------------ik~~p~~~ql  150 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSK----NYRGHGGSINE--------------------------------------IKFHPDRPQL  150 (385)
T ss_pred             ceeEEEEEecchhhhcc----ceeccCccchh--------------------------------------hhcCCCCCcE
Confidence            99999999999887654    33333222211                                      4577888877


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ++ +++.|.+|++|++++..++..|-+..     ||    ++.+.++. |+++   |. +|++++.|.+|++|++..
T Consensus       151 vl-s~SkD~svRlwnI~~~~Cv~VfGG~e-----gH----rdeVLSvD-~~~~---gd-~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  151 VL-SASKDHSVRLWNIQTDVCVAVFGGVE-----GH----RDEVLSVD-FSLD---GD-RIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             EE-EecCCceEEEEeccCCeEEEEecccc-----cc----cCcEEEEE-EcCC---CC-eeeccCCcceEEEEecCh
Confidence            76 78889999999999999999987322     55    56899998 9984   55 999999999999999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.4e-14  Score=101.57  Aligned_cols=158  Identities=16%  Similarity=0.268  Sum_probs=103.1

Q ss_pred             EEEEEeCCCCEEEEecC----------CCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEE--EeCCCcE
Q 024245           22 TDVCFHQTKPILFAGTT----------GGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV   88 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~d~~i   88 (270)
                      ..+.|+++|.+|+.-..          -+...+|.++. +.....+..... ++|.+++|+|  +|+.|+.  |..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence            46889999987655322          23455666532 344555544332 4699999999  8888754  4467799


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe-
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-  167 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-  167 (270)
                      .+||++..     ++..+.......                                        +.|+|+|++++++. 
T Consensus        86 ~lyd~~~~-----~i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~  120 (194)
T PF08662_consen   86 TLYDVKGK-----KIFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF  120 (194)
T ss_pred             EEEcCccc-----EeEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence            99999622     122332211110                                        56999998777632 


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC------CCcEEEEEcCCC
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP  241 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~------dg~i~vwd~~~~  241 (270)
                      +...|.|.+||.++.+.+.+.+         |     ..+..+. |+|   +|+ +|+++..      |+.++||+..  
T Consensus       121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsP---dGr-~~~ta~t~~r~~~dng~~Iw~~~--  179 (194)
T PF08662_consen  121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSP---DGR-YLATATTSPRLRVDNGFKIWSFQ--  179 (194)
T ss_pred             cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcC---CCC-EEEEEEeccceeccccEEEEEec--
Confidence            2335789999999888887766         2     2356776 999   566 7777653      7889999986  


Q ss_pred             Ccceeee
Q 024245          242 GIPLTAM  248 (270)
Q Consensus       242 ~~~~~~~  248 (270)
                      |+.+...
T Consensus       180 G~~l~~~  186 (194)
T PF08662_consen  180 GRLLYKK  186 (194)
T ss_pred             CeEeEec
Confidence            5554443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-14  Score=122.23  Aligned_cols=198  Identities=16%  Similarity=0.283  Sum_probs=134.3

Q ss_pred             cccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245           10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      .+..+..|+..|..++.++. +.+++|||.||+|++||..+-       +...++....  .++.++.+.+  +++.++.
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~Av 1115 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQFAV 1115 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeEEE
Confidence            67888889999999999885 489999999999999998641       2222333233  6699999999  8899999


Q ss_pred             EeCCCcEEEEEccCCccCCCCccce--ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC-
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA-  158 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  158 (270)
                      ++.||.|++.+++............  ..........++                                   -+|.. 
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~~~ 1160 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFTAI 1160 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------eccccc
Confidence            9999999999987632111000000  000000000000                                   01111 


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      .+..++++ +...+.|..||+++.....+++.          ....+.+++++ .+|.+.    +++.|...|.+.+||+
T Consensus      1161 ~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~~~----WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1161 VQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPWCN----WLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred             ccceeEEE-EEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCCce----EEEEecCCceEEEEEe
Confidence            12223333 34568899999999887777763          22467888888 888533    9999999999999999


Q ss_pred             CCCCcceeeee-ccCCCeeEEEeecC
Q 024245          239 RNPGIPLTAMK-VHLEPGLECSMWRN  263 (270)
Q Consensus       239 ~~~~~~~~~~~-~~~~~v~~~~~s~~  263 (270)
                      +- +.++..+. .+..+|+.+..+|-
T Consensus      1225 RF-~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1225 RF-RVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             ec-CceeecccCcccCCcceEEeecc
Confidence            98 77777665 33467777777664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=2.5e-15  Score=118.90  Aligned_cols=172  Identities=17%  Similarity=0.212  Sum_probs=122.8

Q ss_pred             CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+...+.+|...|+++.|+| ....|+++++|.+|++||+.+.+....+.+|.  +.|..++|+|  +|+.+++.+.||+
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt--dqIf~~AWSp--dGr~~AtVcKDg~  743 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT--DQIFGIAWSP--DGRRIATVCKDGT  743 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc--CceeEEEECC--CCcceeeeecCce
Confidence            46678899999999999999 66799999999999999999999999999999  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      |++|+.++++.   ++..-++... .....                                    +.|..+|+++++ +
T Consensus       744 ~rVy~Prs~e~---pv~Eg~gpvg-tRgAR------------------------------------i~wacdgr~viv-~  782 (1012)
T KOG1445|consen  744 LRVYEPRSREQ---PVYEGKGPVG-TRGAR------------------------------------ILWACDGRIVIV-V  782 (1012)
T ss_pred             EEEeCCCCCCC---ccccCCCCcc-Cccee------------------------------------EEEEecCcEEEE-e
Confidence            99999988752   2222221111 10000                                    447778876664 5


Q ss_pred             cCC---CceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          168 GEQ---LSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       168 ~~~---d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      |.+   ...|.+||..+-.  .+++....           ......-- .|.++   ...++++|-.|..|++|.+-.
T Consensus       783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-----------vaps~LvP-~YD~D---s~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  783 GFDKSSERQVQMYDAQTLDLRPLYTQVLD-----------VAPSPLVP-HYDYD---SNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cccccchhhhhhhhhhhccCCcceeeeec-----------ccCccccc-cccCC---CceEEEecCCCceEEEEEecC
Confidence            542   3467888876432  33333210           01111111 14443   335899999999999999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=7.8e-13  Score=106.64  Aligned_cols=228  Identities=21%  Similarity=0.388  Sum_probs=157.4

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEE-eeCCCCC-EEEEEeC-CCcE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV   88 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-d~~i   88 (270)
                      .+..|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+  ++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence            467899999999999999999999999999999998876 6666666432 25777777 66  766 5555444 9999


Q ss_pred             EEEEccC-CccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        89 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      .+||... ...    ...+..+......+.............  .+...+|+......+. .+.+|..    ++|+|++.
T Consensus       137 ~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  211 (466)
T COG2319         137 KLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-TLAGHTDPVSSLAFSPDGG  211 (466)
T ss_pred             EEEEecCCCeE----EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-eeccCCCceEEEEEcCCcc
Confidence            9999987 332    223444444444344443333222222  4566677777644333 3333444    88899987


Q ss_pred             eEEEEecCCCceEEEEeCCCcceee-eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .++ ++++.|+.|++||...+..+. .+.        +|....   +.  . |+|++   . ++++++.|+.+++||++.
T Consensus       212 ~~~-~~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~---~~--~-~~~~~---~-~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         212 LLI-ASGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV---VS--S-FSPDG---S-LLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             eEE-EEecCCCcEEEEECCCCcEEeeecC--------CCCcce---eE--e-ECCCC---C-EEEEecCCCcEEEeeecC
Confidence            344 355779999999998777777 465        563321   11  4 88853   3 788999999999999997


Q ss_pred             CCcceeeeeccCCCeeEEEeecCCCce
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ....+..+.+|...|.++.|+|++..+
T Consensus       273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         273 SSSLLRTLSGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             CCcEEEEEecCCccEEEEEECCCCCEE
Confidence            444355556788999999999966554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.3e-13  Score=109.62  Aligned_cols=220  Identities=12%  Similarity=0.040  Sum_probs=129.8

Q ss_pred             cccccccEEEEEEeCCCCEEEEec---CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCC--c
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG--T   87 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~--~   87 (270)
                      +..+...+...+|+|||+.|+..+   .+..|.+|++.+++....... .  ..+..+.|+|  +|+.|+.. +.+|  .
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~--~~~~~~~~SP--DG~~La~~~~~~g~~~  268 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P--RHNGAPAFSP--DGSKLAFALSKTGSLN  268 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-C--CCcCCeEECC--CCCEEEEEEcCCCCcE
Confidence            334566889999999999887653   245799999988765433222 2  2255789999  99988744 4455  5


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~  163 (270)
                      |.+||+.+++...  +... ........++.++..........+...+|  ++..++.......+...  ..|+|||+.+
T Consensus       269 I~~~d~~tg~~~~--lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        269 LYVMDLASGQIRQ--VTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             EEEEECCCCCEEE--ccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            8889998875432  1111 11111122222222111111122233454  44444333222223222  8899999987


Q ss_pred             EEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc---EEEEEcC
Q 024245          164 MAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS---ILVWDIR  239 (270)
Q Consensus       164 ~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~---i~vwd~~  239 (270)
                      +++... ....|.+||+.+++.. .+..       .+      ...... |+|   ||+ +|+..+.++.   +.++++.
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~-------~~------~~~~p~-~Sp---DG~-~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQ-VLTD-------TF------LDETPS-IAP---NGT-MVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EeCC-------CC------CCCCce-ECC---CCC-EEEEEEcCCCceEEEEEECC
Confidence            664332 1245888999877643 3431       11      112344 998   566 6777766653   6777775


Q ss_pred             CCCcceeeeeccCCCeeEEEeec
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                        +.....+.+|.+.+...+|+|
T Consensus       407 --G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        407 --GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             --CCCeEECccCCCCcCCcccCC
Confidence              566677778888899999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=3.3e-14  Score=110.32  Aligned_cols=163  Identities=17%  Similarity=0.266  Sum_probs=115.1

Q ss_pred             cccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC--------------CceeEEE--e----------ecCCCcceEEEEE
Q 024245           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ--------------HRTVSSS--W----------VHSAAHGIVSVAT   70 (270)
Q Consensus        18 ~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~--------------~~~~~~~--~----------~~~~~~~v~~~~~   70 (270)
                      +..|+|+.|-| +...++.+-.+|.++++|.+.              +......  +          -+..++.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            37899999999 444667778899999997642              1111110  0          1112256899999


Q ss_pred             eeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245           71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (270)
Q Consensus        71 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (270)
                      +|  ||++|++.++||.+||||..+.++..    .++.-... .|                                   
T Consensus       299 S~--DG~~LA~VSqDGfLRvF~fdt~eLlg----~mkSYFGGLLC-----------------------------------  337 (636)
T KOG2394|consen  299 SP--DGKYLATVSQDGFLRIFDFDTQELLG----VMKSYFGGLLC-----------------------------------  337 (636)
T ss_pred             cC--CCceEEEEecCceEEEeeccHHHHHH----HHHhhccceEE-----------------------------------
Confidence            99  99999999999999999999876543    22211111 11                                   


Q ss_pred             CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC-------------
Q 024245          150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-------------  216 (270)
Q Consensus       150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~-------------  216 (270)
                          ++|||||++++  +|++|--|.||.+..++.+..=+        ||    ..+|..++ |.|-             
T Consensus       338 ----vcWSPDGKyIv--tGGEDDLVtVwSf~erRVVARGq--------GH----kSWVs~Va-FDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  338 ----VCWSPDGKYIV--TGGEDDLVTVWSFEERRVVARGQ--------GH----KSWVSVVA-FDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             ----EEEcCCccEEE--ecCCcceEEEEEeccceEEEecc--------cc----ccceeeEe-ecccccccccccccccc
Confidence                67999999665  68889999999999988887766        66    44555555 6521             


Q ss_pred             ------------------CC-C------------CceEEEEecCCCcEEEEEcCC
Q 024245          217 ------------------KS-Q------------GFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       217 ------------------~~-~------------g~~~l~~~~~dg~i~vwd~~~  240 (270)
                                        .+ +            -.+.|.+.+.|-.+.+||+..
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence                              00 1            135789999999999999975

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=3.6e-13  Score=108.58  Aligned_cols=187  Identities=25%  Similarity=0.496  Sum_probs=136.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~   86 (270)
                      .....+.+|...|.+++|+|++.++++++. |+.+++|++..+..+..+..|.  ..|.+++|+|  ++. .+++++.|+
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~~d~  221 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSSLAFSP--DGGLLIASGSSDG  221 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEEEEEcC--CcceEEEEecCCC
Confidence            456678889999999999999998988886 9999999999888888888877  6699999998  776 555669999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .|++||...+.....   .+..+....  +                                     ..|++++.. ++ 
T Consensus       222 ~i~~wd~~~~~~~~~---~~~~~~~~~--~-------------------------------------~~~~~~~~~-~~-  257 (466)
T COG2319         222 TIRLWDLSTGKLLRS---TLSGHSDSV--V-------------------------------------SSFSPDGSL-LA-  257 (466)
T ss_pred             cEEEEECCCCcEEee---ecCCCCcce--e-------------------------------------EeECCCCCE-EE-
Confidence            999998774433210   111111110  0                                     037888843 43 


Q ss_pred             ecCCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      +++.|+.+++||.+.... +..+.        +|    ...+.++. |.|.   +. .+++++.|+.+.+||..+ ....
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~~  319 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKLL  319 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-CceE
Confidence            677799999999987665 44442        45    34566666 9984   33 666688889999999887 5544


Q ss_pred             eeee--ccCCCeeEEEee
Q 024245          246 TAMK--VHLEPGLECSMW  261 (270)
Q Consensus       246 ~~~~--~~~~~v~~~~~s  261 (270)
                      ....  .|...+..+.|.
T Consensus       320 ~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             EEeeecccCCceEEEEEC
Confidence            4444  777778999883

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.5e-13  Score=113.43  Aligned_cols=231  Identities=13%  Similarity=0.162  Sum_probs=147.4

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ..-..+.|+|-...++++...-.|+|||.+.++....|..+.. ...|+.+.+-...|..++++++.||.|+||+--...
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            3456788999888898888777899999999998887764332 256999999886677789999999999999753322


Q ss_pred             cCC-CCcc---ce----ecccceEEEEeeccCCccceecCC---CCceEEEeccCceeeeccCCCCC--eEecCC---CC
Q 024245           98 LSS-NPSL---TI----KTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAE---GP  161 (270)
Q Consensus        98 ~~~-~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~---~~  161 (270)
                      ..+ +.+.   .+    .+.....  +-+++......+...   ..+++||............+...  .+++++   |.
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence            100 0000   11    1111111  223333333333322   34667998888877766666554  555543   43


Q ss_pred             eEEEEecCCCceEEEEeCCCcc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                       +++ +|..||.|++||.+...   .+....        .|.....  ++.+. +.+.   |.-.|++|+.||.|++||+
T Consensus      1223 -~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R--------~h~~~~~--Iv~~s-lq~~---G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1223 -IIA-AGFADGSVRVYDRRMAPPDSLVCVYR--------EHNDVEP--IVHLS-LQRQ---GLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             -eEE-EeecCCceEEeecccCCccccceeec--------ccCCccc--ceeEE-eecC---CCcceeeeccCCeEEEEec
Confidence             443 68889999999998654   344455        5655322  66666 7764   3226999999999999999


Q ss_pred             CCC-CcceeeeeccC---CCeeEEEeecCCCce
Q 024245          239 RNP-GIPLTAMKVHL---EPGLECSMWRNPITM  267 (270)
Q Consensus       239 ~~~-~~~~~~~~~~~---~~v~~~~~s~~g~~l  267 (270)
                      +.. .+....+..|.   +..+++..+++...|
T Consensus      1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred             ccCcccccceeeeccccCccceeeeeccCCCee
Confidence            983 22222222222   247777777766554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5.3e-14  Score=110.53  Aligned_cols=200  Identities=13%  Similarity=0.129  Sum_probs=142.7

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..-.|...|+.+.|+..|.||++...+   ..|.|+++.......-|.-..  +.|.++.|+|  ...+|+.++. ..|+
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHP--s~p~lfVaTq-~~vR  590 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHP--SKPYLFVATQ-RSVR  590 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecC--CCceEEEEec-cceE
Confidence            344588999999999999999987553   579999998776665554444  5599999999  6667777664 5799


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      +||+....+++    .+.........+++........+... .....+|+.....+...+.-|..    ++|++.=.  |
T Consensus       591 iYdL~kqelvK----kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP--L  664 (733)
T KOG0650|consen  591 IYDLSKQELVK----KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP--L  664 (733)
T ss_pred             EEehhHHHHHH----HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc--e
Confidence            99998876544    44455555566666655555444433 33444677777666667777766    77777554  5


Q ss_pred             EEecCCCceEEEEeCC------Ccc---eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          165 AVAGEQLSEVEIWDLN------TAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~------~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      +++|+.||++.||.-.      ...   ++..+.        ||.......+..+. |+|..+    +|++++.||+|++
T Consensus       665 fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~--------gH~~~~~~gVLd~~-wHP~qp----WLfsAGAd~tirl  731 (733)
T KOG0650|consen  665 FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR--------GHEKTNDLGVLDTI-WHPRQP----WLFSAGADGTIRL  731 (733)
T ss_pred             eeeecCCCcEEEEeeeeehhhhcCCceEeeeecc--------CceeecccceEeec-ccCCCc----eEEecCCCceEEe
Confidence            5588989999998533      222   345555        78655455677887 999866    9999999999999


Q ss_pred             E
Q 024245          236 W  236 (270)
Q Consensus       236 w  236 (270)
                      |
T Consensus       732 f  732 (733)
T KOG0650|consen  732 F  732 (733)
T ss_pred             e
Confidence            8

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=9.3e-13  Score=106.23  Aligned_cols=222  Identities=12%  Similarity=0.038  Sum_probs=128.9

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT   87 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~   87 (270)
                      +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ....  ..+.+..|+|  +|+.|+ +.+.++.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~--g~~~~~~~SP--DG~~la~~~~~~g~  263 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFK--GSNSAPAWSP--DGRTLAVALSRDGN  263 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEEccCCC
Confidence            3445677889999999999988876643   3599999998876543 2222  3367899999  998876 6678888


Q ss_pred             EEEEEcc--CCccCCCCccceeccc--ceEEEEeeccCCccceecCCCCceEEEec--cCceeeeccCCCCC--eEecCC
Q 024245           88 VKCWDIE--NGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYERE--VGETVDTDSLCDSK--DDVPAE  159 (270)
Q Consensus        88 i~~wd~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~s~~  159 (270)
                      ..+|.++  ++...     .+....  .....++.++.........++...+|.+.  .+......+.+...  ..|+|+
T Consensus       264 ~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        264 SQIYTVNADGSGLR-----RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             ceEEEEECCCCCcE-----ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            7777654  33321     111111  11122332222222222223344555543  33332223333322  789999


Q ss_pred             CCeEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEE
Q 024245          160 GPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVW  236 (270)
Q Consensus       160 ~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vw  236 (270)
                      |++++.++... +..|.+||+.+++.. .+..       +.      ...... |+|   ||+.++++....|.  +++.
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-------~~------~~~~p~-~sp---dg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-------TT------RDESPS-FAP---NGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCCeE-EccC-------CC------CccCce-ECC---CCCEEEEEEecCCCEEEEEE
Confidence            99877544321 136999999887644 3331       11      113345 999   46634444444444  5555


Q ss_pred             EcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          237 DIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ++.  +.....+..+.+.+...+|+|-
T Consensus       401 ~~~--g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        401 SSD--GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECC--CCceEEeecCCCCCCCCccCCC
Confidence            553  5666666666677888899873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.7e-13  Score=107.36  Aligned_cols=223  Identities=12%  Similarity=0.036  Sum_probs=129.1

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG-   86 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~-   86 (270)
                      +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ....  ....+..|+|  +|+.|+ +.+.+| 
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~--g~~~~~~~Sp--DG~~l~~~~s~~g~  271 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFR--GINGAPSFSP--DGRRLALTLSRDGN  271 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCC--CCccCceECC--CCCEEEEEEeCCCC
Confidence            3455677789999999999988877643   4699999988765433 2222  3356789999  988775 555555 


Q ss_pred             -cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCC
Q 024245           87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGP  161 (270)
Q Consensus        87 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~  161 (270)
                       .|.+||+.+++...  +.... .......++.+...........+...+|  ++..++.......+...  .+|+|+|+
T Consensus       272 ~~Iy~~d~~~g~~~~--lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~  348 (433)
T PRK04922        272 PEIYVMDLGSRQLTR--LTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGK  348 (433)
T ss_pred             ceEEEEECCCCCeEE--CccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence             59999998876432  11110 0111112222221111111112233344  44444433333333333  89999999


Q ss_pred             eEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--CcEEEEEc
Q 024245          162 KYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDI  238 (270)
Q Consensus       162 ~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--g~i~vwd~  238 (270)
                      .+++.+... +..|.+||+.+++.. .+..       +.      ...... |+|   ||+.++++....  +.|+++++
T Consensus       349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-------~~------~~~~p~-~sp---dG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-------GS------LDESPS-FAP---NGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             EEEEEECCCCceeEEEEECCCCCeE-ECCC-------CC------CCCCce-ECC---CCCEEEEEEecCCceEEEEEEC
Confidence            887654421 236999999877654 3431       11      122344 998   466334443332  35777777


Q ss_pred             CCCCcceeeeeccCCCeeEEEeec
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      .  +.....+..+.+.+...+|+|
T Consensus       411 ~--g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        411 D--GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C--CCceEEcccCCCCCCCCccCC
Confidence            5  455566665667788888887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=5.3e-13  Score=108.05  Aligned_cols=186  Identities=11%  Similarity=0.013  Sum_probs=117.1

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT   87 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~   87 (270)
                      +.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++... +....  ..+....|+|  +|+.|+ +.+.++.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~~g~  269 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP--GMTFAPRFSP--DGRKVVMSLSQGGN  269 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC--CcccCcEECC--CCCEEEEEEecCCC
Confidence            456677889999999999998887653   4689999998876543 33333  4477899999  998775 5666665


Q ss_pred             --EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245           88 --VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        88 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  165 (270)
                        |.+||+.++....     +.......                                      ....|+|||+.+++
T Consensus       270 ~~Iy~~d~~~~~~~~-----Lt~~~~~~--------------------------------------~~~~~spDG~~i~f  306 (435)
T PRK05137        270 TDIYTMDLRSGTTTR-----LTDSPAID--------------------------------------TSPSYSPDGSQIVF  306 (435)
T ss_pred             ceEEEEECCCCceEE-----ccCCCCcc--------------------------------------CceeEcCCCCEEEE
Confidence              6666777664321     11110000                                      00459999998776


Q ss_pred             EecCCC--ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC---CcEEEEEcCC
Q 024245          166 VAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRN  240 (270)
Q Consensus       166 ~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d---g~i~vwd~~~  240 (270)
                      ++ ..+  ..|+++|+..++. ..+..        +    ........ |+|+   |+ +|+..+.+   ..|.+||+..
T Consensus       307 ~s-~~~g~~~Iy~~d~~g~~~-~~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        307 ES-DRSGSPQLYVMNADGSNP-RRISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             EE-CCCCCCeEEEEECCCCCe-EEeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEEECCC
Confidence            44 223  3688888876554 33331        1    11233455 9995   55 55554432   3688888765


Q ss_pred             CCcceeeeeccCCCeeEEEeecCCCce
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       +. ...+.. ...+....|+|||+.|
T Consensus       368 -~~-~~~lt~-~~~~~~p~~spDG~~i  391 (435)
T PRK05137        368 -SG-ERILTS-GFLVEGPTWAPNGRVI  391 (435)
T ss_pred             -Cc-eEeccC-CCCCCCCeECCCCCEE
Confidence             33 333332 2357789999999876

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=5.2e-13  Score=99.12  Aligned_cols=185  Identities=14%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             cccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC----c--------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----R--------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        18 ~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~----~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +..|+|++|-| .+..|+.|...| |.+|.....    .        +.+.++...+ .+|++|.|++  ||..+++++.
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~  215 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASF  215 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeeccc
Confidence            56899999999 556888888876 999987531    1        1122332222 7799999999  9999998874


Q ss_pred             -CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        85 -d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                       |..|.+||..++....  +......  .+   +.                                   +.|||||.++
T Consensus       216 gsssi~iWdpdtg~~~p--L~~~glg--g~---sl-----------------------------------LkwSPdgd~l  253 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP--LIPKGLG--GF---SL-----------------------------------LKWSPDGDVL  253 (445)
T ss_pred             CcceEEEEcCCCCCccc--ccccCCC--ce---ee-----------------------------------EEEcCCCCEE
Confidence             6789999999987643  2211111  11   00                                   5699999999


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      ++++.  |+..++|.............            ..+.+...+ |+|   +|+++|++.+..-.++--...  ++
T Consensus       254 faAt~--davfrlw~e~q~wt~erw~l------------gsgrvqtac-Wsp---cGsfLLf~~sgsp~lysl~f~--~~  313 (445)
T KOG2139|consen  254 FAATC--DAVFRLWQENQSWTKERWIL------------GSGRVQTAC-WSP---CGSFLLFACSGSPRLYSLTFD--GE  313 (445)
T ss_pred             EEecc--cceeeeehhcccceecceec------------cCCceeeee-ecC---CCCEEEEEEcCCceEEEEeec--CC
Confidence            87554  79999996543332222221            123455555 999   566677777765544433222  11


Q ss_pred             c--------------eeee------ec---cCCCeeEEEeecCCCcee
Q 024245          244 P--------------LTAM------KV---HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~--------------~~~~------~~---~~~~v~~~~~s~~g~~ls  268 (270)
                      +              +..+      .+   -.+.+.+++|.|.|.+|.
T Consensus       314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence            1              0001      11   135788999999999975

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=2.8e-14  Score=110.88  Aligned_cols=167  Identities=18%  Similarity=0.237  Sum_probs=125.0

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      ..++.++.||.+.|-+ +.++..+.+..|.  +.|.+-.|+|  +|.-|+++++||.|++|.-. |-+..    ++....
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~--~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GMLRS----tl~Q~~  145 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHA--AAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GMLRS----TVVQNE  145 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhh--hhhhhcccCC--CCceeeeecCCceEEEEecc-chHHH----HHhhcC
Confidence            3678888999999887 4466667778888  6699999999  99999999999999999754 22111    111111


Q ss_pred             ceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      ....+                                      ++|.|+...++. +.+  +.+.|=-+.....+.+.+ 
T Consensus       146 ~~v~c--------------------------------------~~W~p~S~~vl~-c~g--~h~~IKpL~~n~k~i~Wk-  183 (737)
T KOG1524|consen  146 ESIRC--------------------------------------ARWAPNSNSIVF-CQG--GHISIKPLAANSKIIRWR-  183 (737)
T ss_pred             ceeEE--------------------------------------EEECCCCCceEE-ecC--CeEEEeecccccceeEEe-
Confidence            11110                                      458888888776 433  677777777666666777 


Q ss_pred             CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                             +|    .+.+.++. |+|...    ++++|++|-..++||-.  ++++..-..|..+|++++|.||..++
T Consensus       184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd~~~~  242 (737)
T KOG1524|consen  184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPEKDYL  242 (737)
T ss_pred             -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeecccccee
Confidence                   67    56899998 999744    99999999999999977  67777777888899999999985553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.58  E-value=4e-14  Score=100.63  Aligned_cols=161  Identities=18%  Similarity=0.254  Sum_probs=113.3

Q ss_pred             ccccEEEEEEeC-CCC--EEEEecCCCcEEEEeCCCCceeE----------EEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        17 h~~~v~~~~~s~-~~~--~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ..+.+.|..+.. .+.  ++++|-++|.+.+||+.++..+-          ....|.  .+|.++.+.+  .-+.=++|+
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg  224 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG  224 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence            356788887654 333  67788899999999999873332          233455  6699999988  445567788


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .+..+..|.+.......    ++..   ..                               ...-.|..++.+.||++ +
T Consensus       225 a~dkl~~~Sl~~s~gsl----q~~~---e~-------------------------------~lknpGv~gvrIRpD~K-I  265 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSL----QIRK---EI-------------------------------TLKNPGVSGVRIRPDGK-I  265 (323)
T ss_pred             ccccceeeeeccccCcc----cccc---eE-------------------------------EecCCCccceEEccCCc-E
Confidence            88889999886542111    0000   00                               00111112256778986 4


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      ++ +++.|+.||||..++.+++..++        -|    .+.+++++ |+|+.+    ++|+++.|++|.+|++
T Consensus       266 lA-TAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  266 LA-TAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL  322 (323)
T ss_pred             Ee-ecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence            44 67799999999999999999998        56    35788998 999643    9999999999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=2.1e-13  Score=99.49  Aligned_cols=206  Identities=13%  Similarity=0.070  Sum_probs=134.7

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC-CCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      +.++.++++.|...|++++|+|..+.|++++.|..-+||.. ..++  +...+.-+.  ..++++.|+|  .++.|++|+
T Consensus        44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN--rAAt~V~WsP--~enkFAVgS  119 (361)
T KOG1523|consen   44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN--RAATCVKWSP--KENKFAVGS  119 (361)
T ss_pred             CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec--cceeeEeecC--cCceEEecc
Confidence            35789999999999999999999999999999999999998 4443  333444455  5599999999  999999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      ..+.|.||=++...--.  +...-..+......+                                    ++|+|++-  
T Consensus       120 gar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnnV--  159 (361)
T KOG1523|consen  120 GARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNNV--  159 (361)
T ss_pred             CccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCcc--
Confidence            99999999877543211  000000011111111                                    44677663  


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCC----------CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++++|+.|+..+||..--    +.+..+.....          ...-....+.+..+. |+|+++    .|+-.+.|..+
T Consensus       160 LlaaGs~D~k~rVfSayI----K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~----~lawv~Hds~v  230 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYI----KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN----RLAWVGHDSTV  230 (361)
T ss_pred             eecccccCcceeEEEEee----eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC----EeeEecCCCce
Confidence            444788899999996421    11110000000          001112456788887 999644    89999999999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      .+-|...+.+.+.......-+..++.|-.+..
T Consensus       231 ~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~  262 (361)
T KOG1523|consen  231 SFVDAAGPSERVQSVATAQLPLLSVSWISENS  262 (361)
T ss_pred             EEeecCCCchhccchhhccCCceeeEeecCCc
Confidence            99998875544444443335566666654433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.58  E-value=2.3e-13  Score=100.31  Aligned_cols=243  Identities=16%  Similarity=0.206  Sum_probs=149.6

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCC----------CcceEEEEEeeCCCCCEEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      .+-|.++.|...|.+||+|..+|.|.++.-....     ....++.|..          +..|..+.|.+..+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568999999999999999999999999754322     2233444432          145889999985455677788


Q ss_pred             eCCCcEEEEEccCCccCC------------------CCccc--------------eecccceEEEEeeccCCccceecCC
Q 024245           83 GRDGTVKCWDIENGGLSS------------------NPSLT--------------IKTNSYHFCKLSLVKEPYANAKQAN  130 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~------------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  130 (270)
                      ..|.+|++|.+.......                  .|+..              ...+..+...+++.........++.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            889999999986543221                  11110              0123444455555554444555555


Q ss_pred             CCceEEEeccCceeee--ccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCccee----eeeccCcCCC
Q 024245          131 EPKDCYEREVGETVDT--DSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGG  195 (270)
Q Consensus       131 ~~~~~~~~~~~~~~~~--~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~  195 (270)
                      -.+.+|.++-...-..  ....+.-         ..|+|....+++.+++ .|+|++-|+|...+.    ..+..+.-+.
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence            5566676543221111  1111111         6799998888888776 699999999954421    1222111111


Q ss_pred             CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC------------CCe---eEEEe
Q 024245          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPG---LECSM  260 (270)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~v---~~~~~  260 (270)
                      ....-...-..+..+. |++   +|+ |+++-.. -+|++||+....+++.+++.|.            +.|   ..++|
T Consensus       264 ~rsffseiIsSISDvK-Fs~---sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVK-FSH---SGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             chhhHHHHhhhhhceE-Ecc---CCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence            1111112334567787 998   466 8887764 4899999987788998888774            223   35778


Q ss_pred             ecCCCce
Q 024245          261 WRNPITM  267 (270)
Q Consensus       261 s~~g~~l  267 (270)
                      +-++.++
T Consensus       338 sg~~~~v  344 (433)
T KOG1354|consen  338 SGNDSYV  344 (433)
T ss_pred             cCCcceE
Confidence            8776554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.7e-13  Score=100.56  Aligned_cols=195  Identities=14%  Similarity=0.142  Sum_probs=127.5

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      +-.+..++|++.-..+|++..|-.|++||-.. .+...++.... ..|.+++|-|. .+..|+.|+..| |.+|.....-
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPl-saselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccC-Ccceeeeeecce-eEEEEcCccc
Confidence            45688999999666788999999999999776 44445543332 56999999994 345677777655 8899875432


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceE
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      ....++.....+...                                .....+|..   +.|.+||..++- ++-.|..|
T Consensus       174 n~~r~~~~~s~~~~q--------------------------------vl~~pgh~pVtsmqwn~dgt~l~t-AS~gsssi  220 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQ--------------------------------VLQDPGHNPVTSMQWNEDGTILVT-ASFGSSSI  220 (445)
T ss_pred             ccccccccccccchh--------------------------------heeCCCCceeeEEEEcCCCCEEee-cccCcceE
Confidence            211111111111000                                001223322   779999976653 45568899


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                      .|||..++..+.....            ..+.+.-+. |+|+   |. +|+++.-|+..++|+.........-..+ ++.
T Consensus       221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPd---gd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgr  282 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPD---GD-VLFAATCDAVFRLWQENQSWTKERWILG-SGR  282 (445)
T ss_pred             EEEcCCCCCccccccc------------CCCceeeEE-EcCC---CC-EEEEecccceeeeehhcccceecceecc-CCc
Confidence            9999998886654421            123444565 9995   44 9999999999999966542333333333 458


Q ss_pred             eeEEEeecCCCce
Q 024245          255 GLECSMWRNPITM  267 (270)
Q Consensus       255 v~~~~~s~~g~~l  267 (270)
                      |...+|+|+|++|
T Consensus       283 vqtacWspcGsfL  295 (445)
T KOG2139|consen  283 VQTACWSPCGSFL  295 (445)
T ss_pred             eeeeeecCCCCEE
Confidence            9999999999886

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.3e-13  Score=101.42  Aligned_cols=173  Identities=10%  Similarity=0.200  Sum_probs=120.7

Q ss_pred             CCcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .+.+..+++|...++.++|..  .+..+.+|+.||.|++||++.......+...... .+..+++.+-  +++.+++|..
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE  137 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTE  137 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccc
Confidence            357888999999999999987  4568999999999999999987655555433221 4567777765  5577777653


Q ss_pred             ----CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245           85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (270)
Q Consensus        85 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  160 (270)
                          +-.|.+||++..+....  .-...+...+..                                      +.|+|..
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~--~~~eSH~DDVT~--------------------------------------lrFHP~~  177 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLR--QLNESHNDDVTQ--------------------------------------LRFHPSD  177 (376)
T ss_pred             cccCceEEEEEEeccccchhh--hhhhhccCccee--------------------------------------EEecCCC
Confidence                56899999998754110  011111111110                                      5699998


Q ss_pred             CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      ..+|+ +|+.||-|.|||+....    ++.++.             ....+-.+. |..   ++...|.+-+.+++..+|
T Consensus       178 pnlLl-SGSvDGLvnlfD~~~d~EeDaL~~viN-------------~~sSI~~ig-w~~---~~ykrI~clTH~Etf~~~  239 (376)
T KOG1188|consen  178 PNLLL-SGSVDGLVNLFDTKKDNEEDALLHVIN-------------HGSSIHLIG-WLS---KKYKRIMCLTHMETFAIY  239 (376)
T ss_pred             CCeEE-eecccceEEeeecCCCcchhhHHHhhc-------------ccceeeeee-eec---CCcceEEEEEccCceeEE
Confidence            88887 79999999999997543    233333             233466666 885   342268888899999999


Q ss_pred             EcCC
Q 024245          237 DIRN  240 (270)
Q Consensus       237 d~~~  240 (270)
                      +++.
T Consensus       240 ele~  243 (376)
T KOG1188|consen  240 ELED  243 (376)
T ss_pred             EccC
Confidence            9987

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=3.8e-12  Score=94.71  Aligned_cols=192  Identities=10%  Similarity=0.169  Sum_probs=135.3

Q ss_pred             cEEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           20 SVTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .|--+-|+..  ++|..+.  -+.+++.+.+++..+..+...   .+|.++.++.    ++|+++-++. |.|||+++.+
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee~-IyIydI~~Mk  117 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEES-IYIYDIKDMK  117 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEccc-EEEEecccce
Confidence            4555556644  4444433  345999999988888777654   5599999977    6777776654 9999999987


Q ss_pred             cCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCC
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~  170 (270)
                      .+. .+...+.+....+.+++.......   ...+.+.+.+||..+-+.+. .+..|..    ++|+++|. ++| ++++
T Consensus       118 lLh-TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I~aH~~~lAalafs~~G~-llA-TASe  193 (391)
T KOG2110|consen  118 LLH-TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TINAHKGPLAALAFSPDGT-LLA-TASE  193 (391)
T ss_pred             eeh-hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EEEecCCceeEEEECCCCC-EEE-Eecc
Confidence            654 122333445556666665543332   23335566778877776655 3447777    89999996 444 5555


Q ss_pred             Cce-EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          171 LSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       171 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .|+ ||||.+.+|+.+++|..       |-   ....+.+++ |+|+   ++ +|++.+..++|+++.+..
T Consensus       194 KGTVIRVf~v~~G~kl~eFRR-------G~---~~~~IySL~-Fs~d---s~-~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  194 KGTVIRVFSVPEGQKLYEFRR-------GT---YPVSIYSLS-FSPD---SQ-FLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceEEEEEEcCCccEeeeeeC-------Cc---eeeEEEEEE-ECCC---CC-eEEEecCCCeEEEEEecc
Confidence            564 79999999999999985       33   355788898 9996   44 999999999999999875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.5e-14  Score=110.22  Aligned_cols=214  Identities=16%  Similarity=0.147  Sum_probs=151.1

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      -.-..+.|+.+|++|+.|+..|.|..+|..+++....+..-   ..|..+.|..  +.+++++ .+...+.|||-..-++
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL  203 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE
Confidence            34567899999999999999999999999999998888765   5589999988  7566655 4567899999765432


Q ss_pred             CCCCccceecccceEEEEeeccCCc---cceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCc
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~  172 (270)
                      -     .+..+.   ....+.+-+.   .......+.....|+..++.+.....+...   ++-+|-..  ++-.|...|
T Consensus       204 H-----Clk~~~---~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnG  273 (545)
T KOG1272|consen  204 H-----CLKRHI---RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNG  273 (545)
T ss_pred             e-----ehhhcC---chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCc
Confidence            1     111111   1111222222   223333455566788888877665555444   56666654  444688899


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      +|.+|...+.+++..+-        .|    .+.+.+++ +.|   +|+ |++|.+.|..++|||+++ ...+.++.. .
T Consensus       274 tVSlWSP~skePLvKiL--------cH----~g~V~siA-v~~---~G~-YMaTtG~Dr~~kIWDlR~-~~ql~t~~t-p  334 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKIL--------CH----RGPVSSIA-VDR---GGR-YMATTGLDRKVKIWDLRN-FYQLHTYRT-P  334 (545)
T ss_pred             eEEecCCCCcchHHHHH--------hc----CCCcceEE-ECC---CCc-EEeecccccceeEeeecc-ccccceeec-C
Confidence            99999999999888877        46    45677787 998   466 999999999999999999 444444443 3


Q ss_pred             CCeeEEEeecCCCce
Q 024245          253 EPGLECSMWRNPITM  267 (270)
Q Consensus       253 ~~v~~~~~s~~g~~l  267 (270)
                      .+...++||..|.+.
T Consensus       335 ~~a~~ls~SqkglLA  349 (545)
T KOG1272|consen  335 HPASNLSLSQKGLLA  349 (545)
T ss_pred             CCcccccccccccee
Confidence            467778888877653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=2.8e-13  Score=96.89  Aligned_cols=120  Identities=13%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             cccEEEEEEeCCCCEEEE--ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEE
Q 024245           18 RASVTDVCFHQTKPILFA--GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD   92 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd   92 (270)
                      .++|.+++|+|+|+.+|.  |..++.|.+||++ ++.+..+.  .  ..+..+.|+|  +|++|+.++.   .|.|.+||
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~--~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--T--QPRNTISWSP--DGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--C--CCceEEEECC--CCCEEEEEEccCCCcEEEEEE
Confidence            457999999999997644  5567899999997 66666654  3  4478999999  9999998864   46799999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC---
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE---  169 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---  169 (270)
                      +++.+.+.    ..+... ..   .                                    ++|+|+|++++.++..   
T Consensus       132 ~~~~~~i~----~~~~~~-~t---~------------------------------------~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen  132 VRKKKKIS----TFEHSD-AT---D------------------------------------VEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             CCCCEEee----ccccCc-EE---E------------------------------------EEEcCCCCEEEEEEeccce
Confidence            99765432    221111 00   0                                    5699999988865543   


Q ss_pred             -CCceEEEEeCCCcceeeeec
Q 024245          170 -QLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       170 -~d~~i~iwd~~~~~~~~~~~  189 (270)
                       .|+.++||+.. |+.+.+..
T Consensus       168 ~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  168 RVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             eccccEEEEEec-CeEeEecc
Confidence             47889999985 77766654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=4.7e-13  Score=109.45  Aligned_cols=231  Identities=18%  Similarity=0.225  Sum_probs=143.4

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD   92 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~wd   92 (270)
                      +-|-...-..-.|++|+++++.... ..|.||...++.++..+..|.  .++..+.+.|.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEec
Confidence            3343333344568999998887665 479999999999999999998  77999999985332 4677999999999999


Q ss_pred             ccCCccCCCCccceecccceE------------------EEEe---e---------------------------------
Q 024245           93 IENGGLSSNPSLTIKTNSYHF------------------CKLS---L---------------------------------  118 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~---~---------------------------------  118 (270)
                      ...+.+.+.....++.+....                  ..+.   .                                 
T Consensus        89 ~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~  168 (792)
T KOG1963|consen   89 WSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD  168 (792)
T ss_pred             CCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence            988766541100000000000                  0000   0                                 


Q ss_pred             ccCCccceecCCCCceEEEeccCceee---eccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCC--c--ceeee
Q 024245          119 VKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNT--A--ERCTR  187 (270)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~--~~~~~  187 (270)
                      ........+.-...+.+|.........   ..-..|..    .+++|+++++.  +|..||.|.+|.--.  +  .....
T Consensus       169 ~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  169 NNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             cCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEeccccccccccceE
Confidence            000000000111111122222211000   01111222    78999998543  677899999996432  1  12233


Q ss_pred             eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +..            ....++++. |+++   |. +|++|+..|.+.+|.+.+ ++ .+.++.-.++|..+.+|||+.+.
T Consensus       247 lHW------------H~~~V~~L~-fS~~---G~-~LlSGG~E~VLv~Wq~~T-~~-kqfLPRLgs~I~~i~vS~ds~~~  307 (792)
T KOG1963|consen  247 LHW------------HHDEVNSLS-FSSD---GA-YLLSGGREGVLVLWQLET-GK-KQFLPRLGSPILHIVVSPDSDLY  307 (792)
T ss_pred             EEe------------cccccceeE-EecC---Cc-eEeecccceEEEEEeecC-CC-cccccccCCeeEEEEEcCCCCeE
Confidence            332            244788888 9985   55 999999999999999999 44 45566677899999999999875


Q ss_pred             e
Q 024245          268 S  268 (270)
Q Consensus       268 s  268 (270)
                      +
T Consensus       308 s  308 (792)
T KOG1963|consen  308 S  308 (792)
T ss_pred             E
Confidence            4

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.3e-14  Score=109.06  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=72.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +...|.+|.+.|+.+.|+..|..|++|+.|..|.+||..+++....+. +|.  ..|....|.|..+...+++++.||.+
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence            456788999999999999999999999999999999999888777664 566  55888899997666789999999999


Q ss_pred             EEEEccC
Q 024245           89 KCWDIEN   95 (270)
Q Consensus        89 ~~wd~~~   95 (270)
                      ++=.+..
T Consensus       212 r~s~i~~  218 (559)
T KOG1334|consen  212 RVSEILE  218 (559)
T ss_pred             eeeeecc
Confidence            9887643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.9e-12  Score=106.00  Aligned_cols=78  Identities=23%  Similarity=0.428  Sum_probs=66.1

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--C--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .|...++|.++||+++++|+|..||.|.+|.--.  +  .....+.=|.  +.|.+++|++  +|.+|+||+..+.+.+|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence            4777799999999999999999999999997432  2  2333454455  6699999999  99999999999999999


Q ss_pred             EccCCc
Q 024245           92 DIENGG   97 (270)
Q Consensus        92 d~~~~~   97 (270)
                      .+.+++
T Consensus       279 q~~T~~  284 (792)
T KOG1963|consen  279 QLETGK  284 (792)
T ss_pred             eecCCC
Confidence            999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.51  E-value=8.2e-12  Score=97.77  Aligned_cols=215  Identities=8%  Similarity=0.076  Sum_probs=117.2

Q ss_pred             EEEecCCCcEEEEeCCC-Cc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEEEEccC-CccCCCCcccee
Q 024245           33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIK  107 (270)
Q Consensus        33 l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~~~~~~~~  107 (270)
                      +++...++.|.+||+.+ ++  .++.+...   .....++++|  ++++|++++ .++.|.+|++.. ++...  .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESP   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeec
Confidence            34446789999999964 33  44444432   3467899999  989887654 578899999973 33211  11111


Q ss_pred             cccceEEEEeeccCCc--cceecCCCCceEEEeccCcee---eeccCCCC--C-eEecCCCCeEEEEecCCCceEEEEeC
Q 024245          108 TNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETV---DTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDL  179 (270)
Q Consensus       108 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-~~~s~~~~~~~~~~~~~d~~i~iwd~  179 (270)
                      . ....+.+.+.....  .......+....|++.....+   .....+..  . ++++|+++++++ +...++.|.+||+
T Consensus        78 ~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~  155 (330)
T PRK11028         78 L-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTL  155 (330)
T ss_pred             C-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEE
Confidence            1 11122233332222  222223455566777532211   11122221  2 789999988776 4556799999999


Q ss_pred             CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCCC-C--cceeeeecc----
Q 024245          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-G--IPLTAMKVH----  251 (270)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~~-~--~~~~~~~~~----  251 (270)
                      .+...+......      ............+. |+|   +|+ +++++.+ ++.|.+||+... +  +.+..+..+    
T Consensus       156 ~~~g~l~~~~~~------~~~~~~g~~p~~~~-~~p---dg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~  224 (330)
T PRK11028        156 SDDGHLVAQEPA------EVTTVEGAGPRHMV-FHP---NQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF  224 (330)
T ss_pred             CCCCcccccCCC------ceecCCCCCCceEE-ECC---CCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence            763322110000      00000111233455 998   466 6655554 899999999742 2  223333221    


Q ss_pred             --CCCeeEEEeecCCCce
Q 024245          252 --LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 --~~~v~~~~~s~~g~~l  267 (270)
                        ......+.|+|||++|
T Consensus       225 ~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        225 SDTRWAADIHITPDGRHL  242 (330)
T ss_pred             CCCccceeEEECCCCCEE
Confidence              1123468899999865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2e-12  Score=104.44  Aligned_cols=195  Identities=13%  Similarity=0.093  Sum_probs=111.5

Q ss_pred             CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEE
Q 024245           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (270)
Q Consensus        39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  115 (270)
                      +..|.+||..... .+.+..+.  ..+.+..|+|  +|+.|+.++.+   ..|.+||+.+++...  +........ ...
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~-~~~  254 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG-APA  254 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC-cee
Confidence            5789999987544 44555555  5699999999  99999877643   369999998875321  222222211 122


Q ss_pred             EeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeee
Q 024245          116 LSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRL  188 (270)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~  188 (270)
                      ++.++..........+...+|  ++..+....  +..+..    ..|+|||+.++++ +..++...||++.... ....+
T Consensus       255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--lt~~~~~~~~~~wSpDG~~i~f~-s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--LTSGAGNNTEPSWSPDGQSILFT-SDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             ECCCCCEEEEEEecCCcEEEEEEECCCCCeEe--eccCCCCcCCEEECCCCCEEEEE-ECCCCCceEEEEECCCCCeEEe
Confidence            222222222222223333444  444443222  222221    8999999987764 4457888888775432 22222


Q ss_pred             ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .         +    ..  .... |+|+   |+ +|+..+.++ +.+||+.+ ++.......+  ...+++|+|||++|-
T Consensus       332 ~---------~----~~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~-g~~~~lt~~~--~~~~~~~sPdG~~i~  387 (429)
T PRK01742        332 G---------G----RG--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS-GSTEVLSSTF--LDESPSISPNGIMII  387 (429)
T ss_pred             c---------C----CC--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-CCeEEecCCC--CCCCceECCCCCEEE
Confidence            2         2    11  2345 9984   55 777766654 55699987 5433222222  345788999998763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=3.6e-12  Score=100.03  Aligned_cols=236  Identities=13%  Similarity=0.110  Sum_probs=130.8

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~   87 (270)
                      +.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++....   ...++++++  +|+++++++ .++.
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~~  101 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPGT  101 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCCc
Confidence            5566666544444557899999999999999999999999999999988663   368899999  999988665 6899


Q ss_pred             EEEEEccCCccCCCCccceeccc-------ceEEEEeeccCCccceecCCCCceEE--EeccCceeee-cc-CCCCC--e
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNS-------YHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDT-DS-LCDSK--D  154 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~~~~--~  154 (270)
                      +.++|.++.+.++    .++...       .....+-.................+|  |....+.+.. .. .+...  .
T Consensus       102 v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen  102 VSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             EEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             eeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            9999999886544    333221       11122222222222222222233333  4444332221 11 12212  8


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc-------CCCceeeeeeecCCCCCCCceEEEEe
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-------KGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-------~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      .|+|++++++++.- .+..|-++|..+++.+..+...    ...|..       +..+.++... -     .+. ..++.
T Consensus       178 ~~dpdgry~~va~~-~sn~i~viD~~~~k~v~~i~~g----~~p~~~~~~~~php~~g~vw~~~-~-----~~~-~~~~~  245 (369)
T PF02239_consen  178 GFDPDGRYFLVAAN-GSNKIAVIDTKTGKLVALIDTG----KKPHPGPGANFPHPGFGPVWATS-G-----LGY-FAIPL  245 (369)
T ss_dssp             EE-TTSSEEEEEEG-GGTEEEEEETTTTEEEEEEE-S----SSBEETTEEEEEETTTEEEEEEE-B-----SSS-SEEEE
T ss_pred             ccCcccceeeeccc-ccceeEEEeeccceEEEEeecc----ccccccccccccCCCcceEEeec-c-----ccc-eeccc
Confidence            89999998887544 3578999999998877766420    001111       1112222221 0     122 22222


Q ss_pred             cCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          228 YEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      -....+.+||..+ .+.++.++....+ ..+.-+||++++
T Consensus       246 ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~v  283 (369)
T PF02239_consen  246 IGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYV  283 (369)
T ss_dssp             EE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEE
T ss_pred             ccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccE
Confidence            2233666788888 8889999876666 778999999875

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.49  E-value=6.1e-13  Score=103.60  Aligned_cols=178  Identities=11%  Similarity=0.107  Sum_probs=117.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+....|.++|.+-.|+|||.-|+++++||.|++|.- +|-...++....  .+|+|++|.|  +.+.++-+.. +.+
T Consensus        95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h~  168 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GHI  168 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-CeE
Confidence            455677889999999999999999999999999999984 454444444444  6699999999  6665554433 344


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      .+=.+.....    +...+.+.....+                                      +.|++... ++ ++|
T Consensus       169 ~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-lI-~sg  204 (737)
T KOG1524|consen  169 SIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-II-ASG  204 (737)
T ss_pred             EEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-ce-eec
Confidence            4433332211    1223333322221                                      34667665 33 478


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      ++|-..+|||.. |..+..-.        .|    .-.+++++ |+|+ .    .++.++.. +++   +         -
T Consensus       205 GED~kfKvWD~~-G~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R---~---------~  252 (737)
T KOG1524|consen  205 GEDFRFKIWDAQ-GANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TAR---F---------S  252 (737)
T ss_pred             CCceeEEeeccc-CcccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eee---e---------c
Confidence            899999999976 66665544        34    34688888 9995 2    55555532 333   1         1


Q ss_pred             eccCCCeeEEEeecCCCcee
Q 024245          249 KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +...+.|..++||+||..+.
T Consensus       253 ~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  253 SPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             CCCccceEEEEEcCCCceee
Confidence            22457899999999998764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.48  E-value=8.6e-14  Score=113.40  Aligned_cols=203  Identities=16%  Similarity=0.226  Sum_probs=132.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +++..++||.+.|+.++.+.+..+++++|.|..|++|.+..+.++..+.+|+  +.|++++|+|.      .+.+.||++
T Consensus       223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrght--gavtaiafsP~------~sss~dgt~  294 (1113)
T KOG0644|consen  223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHT--GAVTAIAFSPR------ASSSDDGTC  294 (1113)
T ss_pred             hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccc--cceeeeccCcc------ccCCCCCce
Confidence            5788899999999999999999999999999999999999999999999999  66999999993      278899999


Q ss_pred             EEEEccCCccCC--CCccceecccceEEEEee------------------------ccCCccceecCCC-----------
Q 024245           89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSL------------------------VKEPYANAKQANE-----------  131 (270)
Q Consensus        89 ~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-----------  131 (270)
                      ++||.+-.-...  .|.. +... ...+.+-.                        .+...........           
T Consensus       295 ~~wd~r~~~~~y~prp~~-~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar  372 (1113)
T KOG0644|consen  295 RIWDARLEPRIYVPRPLK-FTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR  372 (1113)
T ss_pred             EeccccccccccCCCCCC-cccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeee
Confidence            999987211110  1110 0000 00000000                        0000000000000           


Q ss_pred             ---CceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCC
Q 024245          132 ---PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR  204 (270)
Q Consensus       132 ---~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~  204 (270)
                         ....|++.++... ..+.+|..    +.++|-...+.. +.+.||...|||+-.|.+++.+..       +|     
T Consensus       373 ~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~m-sag~dgst~iwdi~eg~pik~y~~-------gh-----  438 (1113)
T KOG0644|consen  373 NDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAM-SAGYDGSTIIWDIWEGIPIKHYFI-------GH-----  438 (1113)
T ss_pred             eeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhh-hccCCCceEeeecccCCcceeeec-------cc-----
Confidence               0111222222211 12233333    788898887766 566799999999999988877763       44     


Q ss_pred             ceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ..+..-+ |++   ||. .++....-|.++|.....
T Consensus       439 ~kl~d~k-FSq---dgt-s~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  439 GKLVDGK-FSQ---DGT-SIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             ceeeccc-cCC---CCc-eEecCCCCCceEEeccCC
Confidence            2344444 998   455 777777778888887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3e-11  Score=98.04  Aligned_cols=222  Identities=13%  Similarity=0.026  Sum_probs=125.4

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC--
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG--   86 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~--   86 (270)
                      .+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++..... ...  +.+....|+|  +|+.|+ +.+.++  
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~--g~~~~~~~Sp--DG~~la~~~~~~g~~  267 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFE--GLNGAPAWSP--DGSKLAFVLSKDGNP  267 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCC--CCcCCeEECC--CCCEEEEEEccCCCc
Confidence            344567788999999999988776543   36999999887654432 222  3356789999  988876 555555  


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCC--eEecCCCCe
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSK--DDVPAEGPK  162 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~s~~~~~  162 (270)
                      .|.+||+.+++...  +.... .......++.++..........+...+  +++..++.......+...  ..|+|+|+.
T Consensus       268 ~Iy~~d~~~~~~~~--lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        268 EIYVMDLASRQLSR--VTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKT  344 (430)
T ss_pred             eEEEEECCCCCeEE--cccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            57788988775422  11111 111111122222211111111222233  344455443333333322  789999998


Q ss_pred             EEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEc
Q 024245          163 YMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDI  238 (270)
Q Consensus       163 ~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~  238 (270)
                      +++... .++  .|.+||+.+++. ..+..       ..      ...... |+|   ||+.++++...+|.  |+++++
T Consensus       345 i~~~~~-~~~~~~l~~~dl~tg~~-~~lt~-------~~------~~~~p~-~sp---dg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        345 LVMVHR-QDGNFHVAAQDLQRGSV-RILTD-------TS------LDESPS-VAP---NGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEEEEc-cCCceEEEEEECCCCCE-EEccC-------CC------CCCCce-ECC---CCCEEEEEEecCCceEEEEEEC
Confidence            776443 333  588899987764 33331       11      111234 998   46645555544444  666666


Q ss_pred             CCCCcceeeeeccCCCeeEEEeecC
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      .  +.....+..+.+.+...+|+|-
T Consensus       406 ~--g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        406 N--GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             C--CCceEECcCCCCCcCCCccCCC
Confidence            4  4545556555567788888873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=2.3e-11  Score=88.94  Aligned_cols=174  Identities=12%  Similarity=0.238  Sum_probs=116.9

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-ccCCCCccceecccceEEEEee
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL  118 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~  118 (270)
                      ..|.|||=...+++.++...   .+|.++.+.+    ++|++.- .+.|.||...+. +...  .+....++...|.+..
T Consensus        75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence            57999997777888888766   6699999988    5666665 457999998743 3222  1122223344444443


Q ss_pred             ccCCccceecC--CCCceEEEeccCce-eeeccCCCCC----eEecCCCCeEEEEecCCCce-EEEEeCCCcceeeeecc
Q 024245          119 VKEPYANAKQA--NEPKDCYEREVGET-VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~  190 (270)
                      .........-.  .+.+.+.++...+. ......+|..    ++++-+|. ++| +++..|+ |||||..+|+.++++..
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vA-TaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVA-TASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEE-EeccCcEEEEEEEcCCCcEeeeeec
Confidence            33222111111  23444555554443 3446677777    78888885 555 5555565 89999999999999985


Q ss_pred             CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                             |-   ....+.+++ |+|+..    +|++.|..|+|+|+.++.
T Consensus       223 -------G~---d~A~iy~ia-FSp~~s----~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 -------GV---DRADIYCIA-FSPNSS----WLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -------CC---chheEEEEE-eCCCcc----EEEEEcCCCeEEEEEeec
Confidence                   33   456788998 999644    999999999999999876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=2.1e-11  Score=98.66  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=115.0

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG-   86 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~-   86 (270)
                      +.+..+...+...+|+|+|++|+.++.+   ..|++||+.+++..... ...  ..+.+++|+|  +++.|+ +.+.++ 
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~--~~~~~~~~sp--Dg~~l~~~~~~~~~  257 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP--GMNGAPAFSP--DGSKLAVSLSKDGN  257 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC--CCccceEECC--CCCEEEEEECCCCC
Confidence            3444566678999999999998877643   47999999887654333 233  3467899999  988776 455444 


Q ss_pred             -cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245           87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        87 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  165 (270)
                       .|.+||+.++....     +.......                                      ....|+|+|+.+++
T Consensus       258 ~~i~~~d~~~~~~~~-----l~~~~~~~--------------------------------------~~~~~s~dg~~l~~  294 (417)
T TIGR02800       258 PDIYVMDLDGKQLTR-----LTNGPGID--------------------------------------TEPSWSPDGKSIAF  294 (417)
T ss_pred             ccEEEEECCCCCEEE-----CCCCCCCC--------------------------------------CCEEECCCCCEEEE
Confidence             58888887664321     10000000                                      00348899988776


Q ss_pred             EecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC---cEEEEEcCC
Q 024245          166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRN  240 (270)
Q Consensus       166 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg---~i~vwd~~~  240 (270)
                      ++ ..++  .|.++|+.+++.. .+..        +    ........ |+|+   |+ +|+.++.++   .|.+||+.+
T Consensus       295 ~s-~~~g~~~iy~~d~~~~~~~-~l~~--------~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       295 TS-DRGGSPQIYMMDADGGEVR-RLTF--------R----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             EE-CCCCCceEEEEECCCCCEE-Eeec--------C----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEeCCC
Confidence            43 3333  5888888766543 3331        1    12334455 9984   55 666666655   788999887


Q ss_pred             CCcceeeeeccCCCeeEEEeecCCCce
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       +.. ..+... ......+|+|||..|
T Consensus       356 -~~~-~~l~~~-~~~~~p~~spdg~~l  379 (417)
T TIGR02800       356 -GGE-RVLTDT-GLDESPSFAPNGRMI  379 (417)
T ss_pred             -CCe-EEccCC-CCCCCceECCCCCEE
Confidence             432 333322 234567899999876

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.8e-11  Score=97.34  Aligned_cols=218  Identities=11%  Similarity=0.027  Sum_probs=122.7

Q ss_pred             cccccEEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCc--EE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT--VK   89 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~--i~   89 (270)
                      .+...+....|+|||+.|+..+.+   ..|.+||+.+++....... .  .......|+|  +|+.|+ +.+.++.  |.
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~--g~~~~~~wSP--DG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P--GINGAPRFSP--DGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C--CCcCCeeECC--CCCEEEEEEeCCCCeEEE
Confidence            345567889999999988776543   3588999988765432222 2  2345789999  999776 4566665  77


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      ++|+.+++...  +.. .........++.+...........+...+|  ++..++.......+...  .+|+|||+.+++
T Consensus       290 ~~dl~tg~~~~--lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        290 VVDIATKALTR--ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEECCCCCeEE--Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence            77887765422  111 111111122222222211112222233444  44445443333333333  789999998776


Q ss_pred             EecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEcCCC
Q 024245          166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNP  241 (270)
Q Consensus       166 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~~~~  241 (270)
                      +. ..++  .|.++|+.+++.. .+..       ..      ...... |+|+   |+.++++...+|.  +++++..  
T Consensus       367 ~~-~~~g~~~I~~~dl~~g~~~-~lt~-------~~------~d~~ps-~spd---G~~I~~~~~~~g~~~l~~~~~~--  425 (448)
T PRK04792        367 VN-RTNGKFNIARQDLETGAMQ-VLTS-------TR------LDESPS-VAPN---GTMVIYSTTYQGKQVLAAVSID--  425 (448)
T ss_pred             EE-ecCCceEEEEEECCCCCeE-EccC-------CC------CCCCce-ECCC---CCEEEEEEecCCceEEEEEECC--
Confidence            43 3344  4566788776643 3331       11      111234 9984   5535555555554  6667764  


Q ss_pred             CcceeeeeccCCCeeEEEeec
Q 024245          242 GIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +.....+..+.+.+...+|+|
T Consensus       426 G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        426 GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEECcCCCCCcCCCccCC
Confidence            566666766666778888987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=8.1e-11  Score=92.53  Aligned_cols=177  Identities=16%  Similarity=0.111  Sum_probs=111.9

Q ss_pred             EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (270)
Q Consensus        33 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  112 (270)
                      +++-..++.|.|.|..+.+.+..+....  ..-..+.|+|  ||+++++++.||.|.++|+.+.+.+.    .++.....
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~   80 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP   80 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence            3556678999999999999999998654  2234578899  99999999999999999999987543    33332222


Q ss_pred             EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (270)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  192 (270)
                      ..                                       +++|+||+++++ +....+.+.++|.++.+.++.+....
T Consensus        81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred             ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence            11                                       669999998876 45568999999999999999887310


Q ss_pred             CCCCCCccc-CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          193 CGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       193 ~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                            ... .....+.++. .+|.   ...++++--+.+.|.+.|......+......-........|+|+++|+
T Consensus       121 ------~~~~~~~~Rv~aIv-~s~~---~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~  186 (369)
T PF02239_consen  121 ------MPVDGPESRVAAIV-ASPG---RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF  186 (369)
T ss_dssp             ------E-TTTS---EEEEE-E-SS---SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred             ------ccccccCCCceeEE-ecCC---CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence                  000 0122344454 5553   222666666668899999887433333333345677889999999875

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.2e-11  Score=92.65  Aligned_cols=181  Identities=15%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             ccEEEEEEeCC-CCEEEEecCC--CcEEEEeCCCCceeEEEeecCC---------CcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           19 ASVTDVCFHQT-KPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA---------AHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..+..|.-++. ..++|+|+..  ..+.|||++..+.+  +.+..-         +-.++++.|.+......|++++.-+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h  226 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH  226 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence            44556666663 3466779988  89999999977444  332211         1236788888822278999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .+++||.+.++   +|+.++.........                                      +...|.+..++  
T Consensus       227 qvR~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy--  263 (412)
T KOG3881|consen  227 QVRLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY--  263 (412)
T ss_pred             eEEEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--
Confidence            99999999765   566655444333222                                      23557777554  


Q ss_pred             ecCCCceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          167 AGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      +|..-+.+..||++.++.... +.        |    ..+.+.++. .+|..+    +|++++-|..|+|+|+.+ .+++
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~~~----~las~GLDRyvRIhD~kt-rkll  325 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPTHP----VLASCGLDRYVRIHDIKT-RKLL  325 (412)
T ss_pred             EecccchhheecccCceeeccccC--------C----ccCCcceEE-EcCCCc----eEEeeccceeEEEeeccc-chhh
Confidence            566789999999999887766 44        2    456777787 888543    999999999999999998 5554


Q ss_pred             eeeeccCCCeeEEEeecC
Q 024245          246 TAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~  263 (270)
                      ...- -...+++|-+.++
T Consensus       326 ~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  326 HKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             hhhh-hhccccEEEecCC
Confidence            4332 2456677777554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=4e-12  Score=95.99  Aligned_cols=171  Identities=17%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC---C-EEE-EEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL---N-KVI-SQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~l~-s~~   83 (270)
                      ..+.....|.+.|.+|.|+|||++|++-+.| ..+||+++++.+++.......+.....+.|+.  ++   . +++ ...
T Consensus       177 ~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~  253 (398)
T KOG0771|consen  177 LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQF  253 (398)
T ss_pred             hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecC
Confidence            4455666799999999999999999999999 89999999997777665333335567778877  53   2 233 333


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG  160 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~  160 (270)
                      .-+.|+.||+..-....  .....                                      .....++.   ++.+++|
T Consensus       254 ~~~~v~~~~~~~w~~~~--~l~~~--------------------------------------~~~~~~~siSsl~VS~dG  293 (398)
T KOG0771|consen  254 PGGGVRLCDISLWSGSN--FLRLR--------------------------------------KKIKRFKSISSLAVSDDG  293 (398)
T ss_pred             CCCceeEEEeeeecccc--ccchh--------------------------------------hhhhccCcceeEEEcCCC
Confidence            44567777764322100  00000                                      00011111   6688999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.+.  -|+.||.|-|++..+.+.++-.+.       .|    ...++.+. |+|+.   + ++++.+.|..+.|..+.-
T Consensus       294 kf~A--lGT~dGsVai~~~~~lq~~~~vk~-------aH----~~~VT~lt-F~Pds---r-~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  294 KFLA--LGTMDGSVAIYDAKSLQRLQYVKE-------AH----LGFVTGLT-FSPDS---R-YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEE--EeccCCcEEEEEeceeeeeEeehh-------hh----eeeeeeEE-EcCCc---C-cccccccCCceeEEEEee
Confidence            8544  477799999999999998888875       56    45889998 99963   3 889999998888887654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.42  E-value=1.4e-10  Score=94.37  Aligned_cols=210  Identities=12%  Similarity=0.084  Sum_probs=127.7

Q ss_pred             CCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc--eecccceEEE
Q 024245           39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT--IKTNSYHFCK  115 (270)
Q Consensus        39 dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~  115 (270)
                      ++.+.||+++.. .+...+...   ..|.++.|+|. +.++++.|+.+|.|.+||++.+.........  ...+......
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~---s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESP---SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             CceEEEEecCCCCCceEEEecC---CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            347999999876 344444433   66999999997 5589999999999999999987652111111  2222322222


Q ss_pred             EeeccCCc---cceecCCCCceEEEeccCceeeecc------------CCCCC---eEecCCCCeEEEEecCCCceEEEE
Q 024245          116 LSLVKEPY---ANAKQANEPKDCYEREVGETVDTDS------------LCDSK---DDVPAEGPKYMAVAGEQLSEVEIW  177 (270)
Q Consensus       116 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~---~~~s~~~~~~~~~~~~~d~~i~iw  177 (270)
                      +.......   .......+.+..|+++.........            .....   ++|.+...+.++ .|+++|.|.--
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~  375 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG  375 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence            22222211   2333446666677766543321110            11111   788888877776 47788988763


Q ss_pred             eCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245          178 DLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG  255 (270)
Q Consensus       178 d~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v  255 (270)
                      .....+.-  ..++.     ..+| ....+.+.++. ++|-..  . .+++++ |.+|+||.......|+..+..+...|
T Consensus       376 ~r~g~~~~~~~~~~~-----~~~~-~~h~g~v~~v~-~nPF~~--k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v  444 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKG-----HSTF-ITHIGPVYAVS-RNPFYP--K-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV  444 (555)
T ss_pred             eccCCcccccccccc-----cccc-cccCcceEeee-cCCCcc--c-eeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence            33222211  11120     0011 22355777887 888633  1 555555 99999999884378888888888889


Q ss_pred             eEEEeecCC
Q 024245          256 LECSMWRNP  264 (270)
Q Consensus       256 ~~~~~s~~g  264 (270)
                      ++++|||..
T Consensus       445 ~~vaWSptr  453 (555)
T KOG1587|consen  445 TDVAWSPTR  453 (555)
T ss_pred             eeeEEcCcC
Confidence            999999964

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=2.2e-11  Score=89.07  Aligned_cols=85  Identities=15%  Similarity=0.275  Sum_probs=77.0

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCc-EEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+.+|.+.|.|++.+.+|.++||+|..|+ |+|||..+|+.++++.-......|++|+|+|  +..+|+++|..|++++
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLHI  252 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEEE
Confidence            467899999999999999999999999997 7899999999999998665557899999999  9999999999999999


Q ss_pred             EEccCCcc
Q 024245           91 WDIENGGL   98 (270)
Q Consensus        91 wd~~~~~~   98 (270)
                      |.++....
T Consensus       253 F~l~~~~~  260 (346)
T KOG2111|consen  253 FSLRDTEN  260 (346)
T ss_pred             EEeecCCC
Confidence            99987543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=5.4e-11  Score=96.11  Aligned_cols=196  Identities=15%  Similarity=0.073  Sum_probs=107.3

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  116 (270)
                      ..|.++|.. +...+.+..+.  ..+.+.+|+|  +|+.|+..+.+   ..|.+||+.+++...  +...++.. ....+
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~-~~~~~  247 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSN-SAPAW  247 (427)
T ss_pred             cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCc-cceEE
Confidence            467777874 44444444454  5689999999  99988866543   359999998886432  21122111 11222


Q ss_pred             eeccCCccceecCCCCceEEEec--cCceeeeccCCC---CC-eEecCCCCeEEEEecCCCceEEEEeC--CCcceeeee
Q 024245          117 SLVKEPYANAKQANEPKDCYERE--VGETVDTDSLCD---SK-DDVPAEGPKYMAVAGEQLSEVEIWDL--NTAERCTRL  188 (270)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~-~~~s~~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~  188 (270)
                      +.++..........+...+|.+.  .+..  ..+..+   .. ..|+|||+.++++ +..++...||.+  ..++. ..+
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~-s~~~g~~~Iy~~~~~~g~~-~~l  323 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFT-SDRGGAPQIYRMPASGGAA-QRV  323 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEE-ecCCCCcEEEEEECCCCce-EEE
Confidence            22222222222223344555443  2322  122222   22 7899999987764 444566666654  44432 222


Q ss_pred             ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC---cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      ...      +      ....... |+|+   |+ +|+..+.++   .|++||+.+ ++.. .+.. .......+|+|||+
T Consensus       324 t~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d~~~-g~~~-~lt~-~~~~~~p~~spdg~  383 (427)
T PRK02889        324 TFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQDLAT-GQVT-ALTD-TTRDESPSFAPNGR  383 (427)
T ss_pred             ecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEECCC-CCeE-EccC-CCCccCceECCCCC
Confidence            210      1      1122345 9994   55 666555443   699999987 4433 3332 23456789999998


Q ss_pred             ce
Q 024245          266 TM  267 (270)
Q Consensus       266 ~l  267 (270)
                      .|
T Consensus       384 ~l  385 (427)
T PRK02889        384 YI  385 (427)
T ss_pred             EE
Confidence            76

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=4.7e-12  Score=111.11  Aligned_cols=197  Identities=13%  Similarity=0.199  Sum_probs=142.9

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      +.+-..|.++.=+|...+.++|+.||.|++|....++.+..+..... +.|+.+.|+.  .|+.+..+..||.+.+|.+.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeecccC
Confidence            34567788898899888999999999999999999999888876554 7799999999  99999999999999999987


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  168 (270)
                      .     .|....+.+......+.+..+...  .....+.....||..-..........|..    +++.|..+.++  +|
T Consensus      2282 p-----k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli--sg 2354 (2439)
T KOG1064|consen 2282 P-----KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI--SG 2354 (2439)
T ss_pred             C-----cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE--ec
Confidence            3     334444444444443443332111  22333455666776433322222255655    88889886433  79


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      +.+|.|.+||++..++++.++.                      +. .   .. ++++|+..|.++||++.. ...+..+
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~----------------------~~-~---~~-~f~~~ss~g~ikIw~~s~-~~ll~~~ 2406 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA----------------------LD-T---RE-YFVTGSSEGNIKIWRLSE-FGLLHTF 2406 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh----------------------hh-h---hh-eeeccCcccceEEEEccc-cchhhcC
Confidence            9999999999999888888871                      22 1   11 999999999999999998 4555555


Q ss_pred             e
Q 024245          249 K  249 (270)
Q Consensus       249 ~  249 (270)
                      .
T Consensus      2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred             c
Confidence            4

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=3.5e-11  Score=100.96  Aligned_cols=202  Identities=15%  Similarity=0.213  Sum_probs=131.5

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      .-++|.....+|++++.-..|+|||.......+.+..... ..|+++.-+-. .|+.+++|..||.|++||.+..... .
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~d-s 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPD-S 1245 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCcc-c
Confidence            4456777444555555578999999998888877765543 56777776553 4699999999999999999865432 1


Q ss_pred             Cccceecccce--EEEEeeccCCcc--ceecCCCCceEEEeccCcee-eeccC-----C--CCCeEecCCCCeEEEEecC
Q 024245          102 PSLTIKTNSYH--FCKLSLVKEPYA--NAKQANEPKDCYEREVGETV-DTDSL-----C--DSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus       102 ~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-----~--~~~~~~s~~~~~~~~~~~~  169 (270)
                      .+...+.+...  +...++......  ......+.+.+||++..... .....     |  +..+..++..+ ++ ++|+
T Consensus      1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-ii-AsGs 1323 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-II-ASGS 1323 (1387)
T ss_pred             cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-ee-eecC
Confidence            22223333322  444444443333  44555677788998874211 11111     2  23377777776 33 4777


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      . +.|+||++. |+.+..++..     .+......+.+.+++ |+|...    ++|+|+.|..|.||....
T Consensus      1324 ~-q~ikIy~~~-G~~l~~~k~n-----~~F~~q~~gs~scL~-FHP~~~----llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1324 A-QLIKIYSLS-GEQLNIIKYN-----PGFMGQRIGSVSCLA-FHPHRL----LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             c-ceEEEEecC-hhhhcccccC-----cccccCcCCCcceee-ecchhH----hhhhccCCceEEEeecCC
Confidence            5 999999997 6655555421     134344556678888 999633    899999999999998776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=2e-09  Score=84.69  Aligned_cols=234  Identities=10%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             ccEEEEEEeCCCCEEEEecC----CCcEEEEeCCCC--c--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245           19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--R--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK   89 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~   89 (270)
                      .....++++|++++|++..+    ++.|..|++...  +  .+.......  .....++++|  ++++|+++. .+|.|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence            34567889999999988866    578999998764  2  333333222  4467899999  989988776 589999


Q ss_pred             EEEccCCccCCCCcccee----------cccceEEEEeeccCCccceecCCCC--ceEEEeccCc--eee----eccCCC
Q 024245           90 CWDIENGGLSSNPSLTIK----------TNSYHFCKLSLVKEPYANAKQANEP--KDCYEREVGE--TVD----TDSLCD  151 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~----~~~~~~  151 (270)
                      ++++..............          ....+.-.+.+............+.  +..+++....  ...    ....+.
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            999987422211111110          0111112222222222333333333  3445555443  111    111222


Q ss_pred             CC--eEecCCCCeEEEEecCCCceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       152 ~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      ..  ++|+|+++++++ ....+++|.++++.  .+.  .+..+..-.    .+.  ........+. ++|   ||+++++
T Consensus       193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~----~~~--~~~~~~~~i~-isp---dg~~lyv  261 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTISTLP----EGF--TGENAPAEIA-ISP---DGRFLYV  261 (345)
T ss_dssp             SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESCE----TTS--CSSSSEEEEE-E-T---TSSEEEE
T ss_pred             CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeeecc----ccc--cccCCceeEE-Eec---CCCEEEE
Confidence            22  999999998887 46678999999998  332  233332100    011  0112455676 998   5665666


Q ss_pred             EecCCCcEEEEEcCCC-Cc--ceeeeeccCCCeeEEEeecCCCce
Q 024245          226 AGYEDGSILVWDIRNP-GI--PLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~-~~--~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +...++.|.+|++... +.  .+..+.........++++|+|++|
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL  306 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence            6667889999999432 22  333343334568999999999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.2e-10  Score=94.38  Aligned_cols=160  Identities=14%  Similarity=0.059  Sum_probs=99.9

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEccCCccCCCCccceecccceEEEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  116 (270)
                      ..|.++|... ...+.+..+.  ..+.+.+|+|  +|+.|+..+.   +..|.+||+.+++...  +.....   ..   
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~--l~~~~g---~~---  248 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL--VGNFPG---MT---  248 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE--eecCCC---cc---
Confidence            4788999864 4444555555  5699999999  9998886653   4689999998775321  110000   00   


Q ss_pred             eeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCC
Q 024245          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                                                         ...+|+|||+.++++ .+.++  .|.+||+.+++.. .+.     
T Consensus       249 -----------------------------------~~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~Lt-----  286 (435)
T PRK05137        249 -----------------------------------FAPRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTTT-RLT-----  286 (435)
T ss_pred             -----------------------------------cCcEECCCCCEEEEE-EecCCCceEEEEECCCCceE-Ecc-----
Confidence                                               004599999887654 33444  4777898876643 344     


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                         .+    ........ |+|+   |+ .|+..+ .+|  .|++||+.. ++ ...+..+...+....|+|||+.|.
T Consensus       287 ---~~----~~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        287 ---DS----PAIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             ---CC----CCccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEE
Confidence               22    12334455 9995   55 555444 344  688888775 43 344443455677789999998763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.9e-10  Score=91.87  Aligned_cols=160  Identities=13%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEccCCccCCCCccceecccceEEEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  116 (270)
                      ..|.+||........ +..+.  ..+.+.+|+|  +|+.|+..+   .+..|.+||+.+++...  +..++....     
T Consensus       179 ~~l~~~d~dg~~~~~-lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~-----  246 (429)
T PRK03629        179 YELRVSDYDGYNQFV-VHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG-----  246 (429)
T ss_pred             eeEEEEcCCCCCCEE-eecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence            379999987554433 33343  5699999999  999888554   23478899988765321  111111100     


Q ss_pred             eeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCC
Q 024245          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                                                          ...|+|||+.++++. +.+|  .|++||+.+++......     
T Consensus       247 ------------------------------------~~~~SPDG~~La~~~-~~~g~~~I~~~d~~tg~~~~lt~-----  284 (429)
T PRK03629        247 ------------------------------------APAFSPDGSKLAFAL-SKTGSLNLYVMDLASGQIRQVTD-----  284 (429)
T ss_pred             ------------------------------------CeEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEccC-----
Confidence                                                045999999877643 2334  59999998776543322     


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCc--EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGS--ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                          +    ........ |+|+   |+ .|+..+. +|.  |+++|+.+ ++ ...+..........+|+|||++|.
T Consensus       285 ----~----~~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        285 ----G----RSNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             ----C----CCCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEE
Confidence                1    12344555 9995   55 5555544 454  44456655 33 344444444567789999998863

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=5e-10  Score=81.30  Aligned_cols=188  Identities=14%  Similarity=0.145  Sum_probs=120.0

Q ss_pred             cccEEEEEEeC---CCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           18 RASVTDVCFHQ---TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        18 ~~~v~~~~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ++.+..|.|..   +|. .++-+..+|.|.++..........+.+-...    ....++.|++  .+..++++..+|.+.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSIS  146 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEE
Confidence            45567777764   455 5666777889999887655444444332110    1135778888  778898888899888


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +-+.....+..  ....+.+....-  .                                    ..|+...+.++. +|+
T Consensus       147 ~v~~t~~~le~--vq~wk~He~E~W--t------------------------------------a~f~~~~pnlvy-tGg  185 (339)
T KOG0280|consen  147 GVYETEMVLEK--VQTWKVHEFEAW--T------------------------------------AKFSDKEPNLVY-TGG  185 (339)
T ss_pred             EEecceeeeee--cccccccceeee--e------------------------------------eecccCCCceEE-ecC
Confidence            55544433322  222233322211  1                                    234444455554 899


Q ss_pred             CCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          170 QLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       170 ~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      +|+.+..||+| .++.+..-..       -|    ..-+.++. -+|.  .+. +++||++|..|++||.|+.++|+..-
T Consensus       186 DD~~l~~~D~R~p~~~i~~n~k-------vH----~~GV~SI~-ss~~--~~~-~I~TGsYDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  186 DDGSLSCWDIRIPKTFIWHNSK-------VH----TSGVVSIY-SSPP--KPT-YIATGSYDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             CCceEEEEEecCCcceeeecce-------ee----ecceEEEe-cCCC--CCc-eEEEeccccceeeeehhcccCccccC
Confidence            99999999999 3344433221       33    34566666 5553  344 99999999999999999879988776


Q ss_pred             eccCCCeeEEEeecCC
Q 024245          249 KVHLEPGLECSMWRNP  264 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g  264 (270)
                      +. .+.|+.+.++|.-
T Consensus       251 ~v-~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  251 KV-GGGVWRIKHHPEI  265 (339)
T ss_pred             cc-ccceEEEEecchh
Confidence            63 5789999998853

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.1e-10  Score=92.95  Aligned_cols=198  Identities=12%  Similarity=0.009  Sum_probs=109.6

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  116 (270)
                      ..|.+||.... ..+.+..+.  ..+.+.+|+|  +|+.|+..+.+   ..|.+||+.+++...  +....... ....+
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~-~~~~~  255 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGIN-GAPSF  255 (433)
T ss_pred             EEEEEECCCCC-CceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCc-cCceE
Confidence            46999998644 334454444  5689999999  99998877643   469999998876422  22222111 11122


Q ss_pred             eeccCCccceecCCC--CceEEEeccCceeeeccCC-CC-CeEecCCCCeEEEEecCCCce--EEEEeCCCcceeeeecc
Q 024245          117 SLVKEPYANAKQANE--PKDCYEREVGETVDTDSLC-DS-KDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       117 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~  190 (270)
                      +..+..........+  ....+++..++........ .. ..+|+|||+.++++ +..+|.  |.++|+.+++.. .+..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~-sd~~g~~~iy~~dl~~g~~~-~lt~  333 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFT-SDRGGRPQIYRVAASGGSAE-RLTF  333 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEE-ECCCCCceEEEEECCCCCeE-Eeec
Confidence            222222111111222  2444566665533221111 11 18999999987764 333444  666777666533 2321


Q ss_pred             CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .      +.      ...... |+|+   |+ +|+..+ .++  .|.+||+.+ ++.. .+. +........|+|||++|
T Consensus       334 ~------g~------~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i  393 (433)
T PRK04922        334 Q------GN------YNARAS-VSPD---GK-KIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLDESPSFAPNGSMV  393 (433)
T ss_pred             C------CC------CccCEE-ECCC---CC-EEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCCCCCceECCCCCEE
Confidence            0      11      223455 9994   55 555443 333  699999987 5443 333 22345678999999875

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=6.2e-11  Score=93.32  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=126.5

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      ..|+++.-..-|+.++....|+-.+++.|+.+..+....  +.++++..++  ...+|++|+.+|.|..||.+...... 
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~-  211 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GELNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVG-  211 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEcccccccccccccc--ccceeeeecC--ccceEEecccCceEEEecchhhhhhe-
Confidence            345555433334444445579999999999998888777  5699999999  76788999999999999999876543 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                         .+.....      +...+...                     ....-..+.|+.+|-.+  ++|..+|.+.|||+++
T Consensus       212 ---~l~~~~~------v~s~pg~~---------------------~~~svTal~F~d~gL~~--aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  212 ---TLDAASS------VNSHPGGD---------------------AAPSVTALKFRDDGLHV--AVGTSTGSVLIYDLRA  259 (703)
T ss_pred             ---eeecccc------cCCCcccc---------------------ccCcceEEEecCCceeE--EeeccCCcEEEEEccc
Confidence               1111100      00000000                     00000015677777443  3577799999999999


Q ss_pred             cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s  261 (270)
                      .+++..-.         |..  .-.+..+. |.+.  +++..+++. ....++|||-.+ +++...+.. ...++.+++-
T Consensus       260 ~~pl~~kd---------h~~--e~pi~~l~-~~~~--~~q~~v~S~-Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~  322 (703)
T KOG2321|consen  260 SKPLLVKD---------HGY--ELPIKKLD-WQDT--DQQNKVVSM-DKRILKIWDECT-GKPMASIEP-TSDLNDFCFV  322 (703)
T ss_pred             CCceeecc---------cCC--ccceeeec-cccc--CCCceEEec-chHHhhhccccc-CCceeeccc-cCCcCceeee
Confidence            98876543         432  34566676 8876  344255555 456899999998 888888874 5569999999


Q ss_pred             cCCCc
Q 024245          262 RNPIT  266 (270)
Q Consensus       262 ~~g~~  266 (270)
                      |++-+
T Consensus       323 p~sGm  327 (703)
T KOG2321|consen  323 PGSGM  327 (703)
T ss_pred             cCCce
Confidence            87543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.31  E-value=5e-12  Score=92.98  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCC
Q 024245           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      -++|||+|+++|++++- .+.|-|.++-+..+.+..-   +.|.-+.|..  +..+++ ....|+.|.+|++...+... 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c-   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC-   85 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence            46899999999999876 7899998887766665543   4488999998  766655 56788899999998664321 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                         .+.........                                      ++|||||+.++. +.+.|-.|.+|.+.+
T Consensus        86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT  123 (447)
T ss_pred             ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence               22221111110                                      569999998887 566799999999987


Q ss_pred             cceee
Q 024245          182 AERCT  186 (270)
Q Consensus       182 ~~~~~  186 (270)
                      .+...
T Consensus       124 ~~~~~  128 (447)
T KOG4497|consen  124 QKGYL  128 (447)
T ss_pred             ceeEE
Confidence            76544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=7.6e-10  Score=87.37  Aligned_cols=227  Identities=15%  Similarity=0.122  Sum_probs=134.0

Q ss_pred             cccccEEEEEEeCCCCE-EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           16 GHRASVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      +|...-+.|..+|||+| +|+|.+--.|++||+.+-...  |.-|.....|.-.-.+.  |-..++--..|.+|.+-..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEecc--chhhheEeecCceeeehhhc
Confidence            37788899999999996 577888899999999864433  44444434444444444  44455555667776553321


Q ss_pred             CCccCCCCccceecccceEEEEeec-cCCccceecCCCCceEEEeccCceeeeccC--CCCC-eEecCCCCeEEEEecCC
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGETVDTDSL--CDSK-DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~~~~~~  170 (270)
                       |....   ..++.   ....+... ++......+.+..+..++++.++-+...-.  +... +.+++... | +++|..
T Consensus       125 -G~hy~---~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-L-la~Gt~  195 (703)
T KOG2321|consen  125 -GRHYR---TRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-L-LACGTE  195 (703)
T ss_pred             -Ceeee---eecCc---CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-e-EEeccc
Confidence             11100   00000   00011111 112223334445555567776664432211  1111 66666654 4 447888


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCccc-CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-  248 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-  248 (270)
                      +|.|..||.++...+.++.....  +..|.. .....++++. |+.   +|- .+++|..+|.|.|||+++ .+|+..- 
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~--v~s~pg~~~~~svTal~-F~d---~gL-~~aVGts~G~v~iyDLRa-~~pl~~kd  267 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASS--VNSHPGGDAAPSVTALK-FRD---DGL-HVAVGTSTGSVLIYDLRA-SKPLLVKD  267 (703)
T ss_pred             CceEEEecchhhhhheeeecccc--cCCCccccccCcceEEE-ecC---Cce-eEEeeccCCcEEEEEccc-CCceeecc
Confidence            99999999999887777763211  111211 1223477887 985   354 899999999999999999 5554433 


Q ss_pred             eccCCCeeEEEeecC
Q 024245          249 KVHLEPGLECSMWRN  263 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~  263 (270)
                      .+..-+|..+.|.+.
T Consensus       268 h~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  268 HGYELPIKKLDWQDT  282 (703)
T ss_pred             cCCccceeeeccccc
Confidence            334568889999775

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=5.9e-10  Score=83.86  Aligned_cols=230  Identities=11%  Similarity=0.093  Sum_probs=143.8

Q ss_pred             ccccEEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        17 h~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      -...|..++|.-+++  .+...+.|..+....+....+...+    ..+....+|..++...    ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence            345678888887554  5555556777877777766555443    2222225677777655    68899999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCC----CCceEEEeccCceeeeccCCCCC------------e
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN----EPKDCYEREVGETVDTDSLCDSK------------D  154 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------------~  154 (270)
                      |..+.+.....++..+........ +..........+..|    ....+|+++..+.+-........            +
T Consensus       130 ~~~k~~d~hss~l~~la~g~g~~~-~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGPGLYD-VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             EeccCCccccccceeeecCCceee-eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence            999866533333333333322211 221111122222222    23456887766433221111111            5


Q ss_pred             EecCCC-CeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          155 DVPAEG-PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       155 ~~s~~~-~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                      .|-+.. .+-++ ++..-+.+++||.+.++ ++.++..            ....++++. .-|+   |. ++++|..-|.
T Consensus       209 ~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g~  270 (412)
T KOG3881|consen  209 RFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKGQ  270 (412)
T ss_pred             eecCCCCCceEE-EEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccch
Confidence            666652 23333 55667999999999765 6666653            234566666 7775   44 8999999999


Q ss_pred             EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCceec
Q 024245          233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMSE  269 (270)
Q Consensus       233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls~  269 (270)
                      +..+|++...-....+++..+.|.+|..+|.+.+|++
T Consensus       271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las  307 (412)
T KOG3881|consen  271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             hheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence            9999999943444458899999999999999888763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=5.4e-11  Score=99.39  Aligned_cols=150  Identities=14%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcc
Q 024245           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL  104 (270)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  104 (270)
                      .++++.-++++|+.-+.|.+|+....+.-..+.+|.  +.|.++.|+.  +|.++++.|+|.++++|++++.+...   .
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHe--G~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~---~  212 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHE--GSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLG---C  212 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccC--CceEEEEEcc--CCcEEEEEecCcceeeeecccccccC---c
Confidence            345666699999999999999987444333578898  6699999999  99999999999999999999986532   0


Q ss_pred             ceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245          105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (270)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~  184 (270)
                      ..-++...                      .|+                ++|.|+   .++ +.+.|-+.++|+.. ++.
T Consensus       213 ~~fgHsaR----------------------vw~----------------~~~~~n---~i~-t~gedctcrvW~~~-~~~  249 (967)
T KOG0974|consen  213 TGFGHSAR----------------------VWA----------------CCFLPN---RII-TVGEDCTCRVWGVN-GTQ  249 (967)
T ss_pred             ccccccce----------------------eEE----------------EEeccc---eeE-EeccceEEEEEecc-cce
Confidence            11111111                      111                346666   233 67789999999766 555


Q ss_pred             eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +..+.        +|.   ...++.+. ..+...    .++|++.||.+++||+..
T Consensus       250 l~~y~--------~h~---g~~iw~~~-~~~~~~----~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 LEVYD--------EHS---GKGIWKIA-VPIGVI----IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ehhhh--------hhh---hcceeEEE-EcCCce----EEEeeccCcchhhhhhhc
Confidence            55676        673   34567776 766433    999999999999999876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.8e-11  Score=95.87  Aligned_cols=172  Identities=12%  Similarity=0.125  Sum_probs=104.2

Q ss_pred             eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcccee-cccceEEEEeeccCCccc---eec
Q 024245           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYAN---AKQ  128 (270)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~  128 (270)
                      .+++.+|.  +.|.+++|+.  +|.+|++|+.|-.+.|||.-..+...    .+. ++...+-+..+.......   ..+
T Consensus        43 E~eL~GH~--GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   43 EAELTGHT--GCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH----SISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             hhhhcccc--ceecceeecC--CCCEEeecCCcceEEeecchhcceee----eeecccccceeEEeeeccCCCeEEEecc
Confidence            35678898  7799999999  99999999999999999998655432    332 233333333333322222   233


Q ss_pred             CCCCceEEEeccCc---------eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC
Q 024245          129 ANEPKDCYEREVGE---------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (270)
Q Consensus       129 ~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  195 (270)
                      ....+.++|+...+         ....-...|..    ++..|+++..+. ++++||+|+-+|++.......-.. +...
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw-sasEDGtirQyDiREph~c~p~~~-~~~~  192 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW-SASEDGTIRQYDIREPHVCNPDED-CPSI  192 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE-EecCCcceeeecccCCccCCcccc-ccHH
Confidence            34445556665421         12223334444    888899987776 567899999999986431111000 0000


Q ss_pred             CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      .... ........++. .+|..+   .+|+.|+.|--.++||.+
T Consensus       193 l~ny-~~~lielk~lt-isp~rp---~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  193 LVNY-NPQLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             HHHh-chhhheeeeee-ecCCCC---ceEEecCCCchhhhhhhh
Confidence            0000 00122344565 888633   399999999999999944

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=2e-10  Score=84.24  Aligned_cols=228  Identities=16%  Similarity=0.228  Sum_probs=132.2

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCC----------CcceEEEEEeeCCCCCEEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      .+.|+++.|...|.||++|...|.|.++.-+...     ....+++|..          +..|..+.|......+.++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4679999999999999999999999999865422     2223444432          134888999873334567777


Q ss_pred             eCCCcEEEEEccCCccCC---------------CCccc------------------------eecccceEEEEeeccCCc
Q 024245           83 GRDGTVKCWDIENGGLSS---------------NPSLT------------------------IKTNSYHFCKLSLVKEPY  123 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~---------------~~~~~------------------------~~~~~~~~~~~~~~~~~~  123 (270)
                      +.|++|++|.+....+..               -|+..                        ...++.....+++.....
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            889999999986542110               00000                        011222233333333333


Q ss_pred             cceecCCCCceEEEeccCce--eeeccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCccee----eee
Q 024245          124 ANAKQANEPKDCYEREVGET--VDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRL  188 (270)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~  188 (270)
                      ....++.-.+.+|.+.-...  -......|.-         ..|+|....++..+.+ .|.|++-|+|...+.    ..+
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhhh
Confidence            33333344444555442221  1111222222         6788988888877766 699999999954321    111


Q ss_pred             ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      ....-+.....-......+..+. |+|   +|+ |+++-+. -+|++||++....|+.++.-|.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~k-Fs~---ngr-yIlsRdy-ltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFK-FSD---NGR-YILSRDY-LTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceE-EcC---CCc-EEEEecc-ceEEEEecccccCCceeechHH
Confidence            11000000000012334566777 998   466 7777654 4899999999888998886553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.27  E-value=8.3e-10  Score=87.18  Aligned_cols=174  Identities=15%  Similarity=0.095  Sum_probs=117.2

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEe------e------------CCCCCEEEEEeCCCcE
Q 024245           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATG------P------------SIGLNKVISQGRDGTV   88 (270)
Q Consensus        28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~------------~~~~~~l~s~~~d~~i   88 (270)
                      |.+.++|....||.+++||..+++..+.|....+ .+...+..|.      |            ..+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4566899999999999999999887777643211 1334455552      1            1122356667777888


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      .+|++..+++..  .+.-..+......                                      +.++.+-..+  .++
T Consensus        83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~~~ci--yS~  120 (541)
T KOG4547|consen   83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQRLGCI--YSV  120 (541)
T ss_pred             EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccccCce--Eec
Confidence            888888776533  1111111111111                                      1122222223  366


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      +.|..+..|+..+.+.+..+..            ....+.+++ .+|+   |. .+++++  +.|++||+++ ++.+..|
T Consensus       121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f  180 (541)
T KOG4547|consen  121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF  180 (541)
T ss_pred             CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence            6799999999999998888874            234566676 8885   55 788876  4799999999 9999999


Q ss_pred             eccCCCeeEEEeecC
Q 024245          249 KVHLEPGLECSMWRN  263 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~  263 (270)
                      .+|.++|.+++|--+
T Consensus       181 tgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  181 TGHGSPVRTLSFTTL  195 (541)
T ss_pred             cCCCcceEEEEEEEe
Confidence            999999999999876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.24  E-value=1.7e-11  Score=63.60  Aligned_cols=38  Identities=29%  Similarity=0.711  Sum_probs=36.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd   46 (270)
                      ++++++++|++.|++|+|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            47889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.6e-11  Score=100.19  Aligned_cols=215  Identities=15%  Similarity=0.227  Sum_probs=143.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC-
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~-   86 (270)
                      +..++++.|...-+|++|+-+.+.|+.|+-.|.|+++++.+|.....+.+|.  ++|+-+.=+.  +|..+++.+. .. 
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~--SavT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ--SAVTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc--cccccccccC--CcceeeeeccccCc
Confidence            4677889999999999999999999999999999999999999999999999  6699888777  8887765443 33 


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC-------eEecC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPA  158 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~  158 (270)
                      -..+|++.+.-   .+..++...    ....+..+.... ....+....+||+.+.......+.+...       ..|+|
T Consensus      1168 lsaLW~~~s~~---~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTG---GPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             hHHHhcccccc---Ccccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence            46689987521   111122111    112222222222 2223345567899988877665544322       78999


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      +...++     .||  .+||++..+.++.|.        .......+      .|+|.+   . .++.-+     -|||+
T Consensus      1241 ~D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~g---~-eVIINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1241 CDTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPSG---N-EVIINS-----EIWDM 1290 (1516)
T ss_pred             CcceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCCC---c-eEEeec-----hhhhh
Confidence            997444     356  589999988888876        22211111      299963   3 566665     48999


Q ss_pred             CCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          239 RNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++ .+.+.....-  .-..+.|+..|.+|
T Consensus      1291 RT-F~lLh~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1291 RT-FKLLHSVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             HH-HHHHhcCccc--cceEEEeccCccch
Confidence            99 6655544432  12456777777654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.24  E-value=1.7e-09  Score=80.00  Aligned_cols=94  Identities=9%  Similarity=0.052  Sum_probs=63.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++|++|..++.-.....-+.+-+||++..+....+..             ...+.+.. |.|..+    .|+.+.....+
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL  385 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL  385 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence            9999999755432333346799999998776666652             23566676 999644    56666666679


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++|...- ...+.. ....-.|..+.|..+|..|
T Consensus       386 Y~W~psg-~~~V~v-P~~GF~i~~l~W~~~g~~i  417 (447)
T KOG4497|consen  386 YFWAPSG-PRVVGV-PKKGFNIQKLQWLQPGEFI  417 (447)
T ss_pred             EEEcCCC-ceEEec-CCCCceeeeEEecCCCcEE
Confidence            9998774 222222 2233578889998888765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=3.7e-11  Score=94.60  Aligned_cols=178  Identities=15%  Similarity=0.235  Sum_probs=121.2

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      +..+.||+..|+.++--.+.+-+++++.|.+|++|.++..       .+..+++.|.  .+|.++.|-.  +-..+++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~S--  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIAS--  801 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceeee--
Confidence            5678899999999988778888999999999999998642       3556677787  6799999998  6556654  


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCC-CCe
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPK  162 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~  162 (270)
                      .||-|++||.--++...    ++...+.....-.                                    +..-++ .+.
T Consensus       802 cD~giHlWDPFigr~La----q~~dapk~~a~~~------------------------------------ikcl~nv~~~  841 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLA----QMEDAPKEGAGGN------------------------------------IKCLENVDRH  841 (1034)
T ss_pred             ccCcceeecccccchhH----hhhcCcccCCCce------------------------------------eEecccCcch
Confidence            47889999987665432    2211111100000                                    001111 234


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++++.++...+|+++|.+..+....++.       ......++.+.+++ ..|.   |. .++++-..|.|.+.|.++ +
T Consensus       842 iliAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G  908 (1034)
T KOG4190|consen  842 ILIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-G  908 (1034)
T ss_pred             heeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-C
Confidence            5555556789999999999987776662       11111234555665 6664   43 899999999999999999 6


Q ss_pred             cceee
Q 024245          243 IPLTA  247 (270)
Q Consensus       243 ~~~~~  247 (270)
                      +.+..
T Consensus       909 ~vINs  913 (1034)
T KOG4190|consen  909 KVINS  913 (1034)
T ss_pred             ceecc
Confidence            65553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.22  E-value=4.1e-11  Score=91.92  Aligned_cols=186  Identities=17%  Similarity=0.153  Sum_probs=126.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .++.++.| ..|..+.|-|.--+|++++..|-+.--|+..|+.+..+....  +.+..++-+|  -...+-+|...|+|.
T Consensus       202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~--G~~~vm~qNP--~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA--GRTDVMKQNP--YNAVIHLGHSNGTVS  276 (545)
T ss_pred             EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--CccchhhcCC--ccceEEEcCCCceEE
Confidence            34555544 578899999988899999999999999999999999887776  5589999999  556778999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +|.....+    |+..+-.+......                                      +++.++|.+++  +.+
T Consensus       277 lWSP~ske----PLvKiLcH~g~V~s--------------------------------------iAv~~~G~YMa--TtG  312 (545)
T KOG1272|consen  277 LWSPNSKE----PLVKILCHRGPVSS--------------------------------------IAVDRGGRYMA--TTG  312 (545)
T ss_pred             ecCCCCcc----hHHHHHhcCCCcce--------------------------------------EEECCCCcEEe--ecc
Confidence            99988764    33344333333221                                      55778887654  445


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC--cceee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTA  247 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~  247 (270)
                      .|..++|||++.-..+.++..       .|      ....++ +|-    .  -+++.+....|.+|.-.-.+  ..-..
T Consensus       313 ~Dr~~kIWDlR~~~ql~t~~t-------p~------~a~~ls-~Sq----k--glLA~~~G~~v~iw~d~~~~s~~~~~p  372 (545)
T KOG1272|consen  313 LDRKVKIWDLRNFYQLHTYRT-------PH------PASNLS-LSQ----K--GLLALSYGDHVQIWKDALKGSGHGETP  372 (545)
T ss_pred             cccceeEeeeccccccceeec-------CC------Cccccc-ccc----c--cceeeecCCeeeeehhhhcCCCCCCcc
Confidence            699999999998776666652       12      233343 653    2  34445556689999532211  11111


Q ss_pred             eecc--CCCeeEEEeecCC
Q 024245          248 MKVH--LEPGLECSMWRNP  264 (270)
Q Consensus       248 ~~~~--~~~v~~~~~s~~g  264 (270)
                      +-.|  .++|.++.|.|=.
T Consensus       373 Ym~H~~~~~V~~l~FcP~E  391 (545)
T KOG1272|consen  373 YMNHRCGGPVEDLRFCPYE  391 (545)
T ss_pred             hhhhccCcccccceeccHH
Confidence            1112  3578888887743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.1e-08  Score=80.99  Aligned_cols=222  Identities=8%  Similarity=0.014  Sum_probs=114.8

Q ss_pred             ccccEEEEEEeCCCCE---EEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC----
Q 024245           17 HRASVTDVCFHQTKPI---LFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG----   86 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~---l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~----   86 (270)
                      ....+..-+|+|||+.   +++...+  ..|.+.++..++..+.... .  ......+|+|  ||+.|+..+. +|    
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~--g~~~~p~wSP--DG~~Laf~s~~~g~~di  257 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-Q--GNQLMPTFSP--RKKLLAFISDRYGNPDL  257 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-C--CCccceEECC--CCCEEEEEECCCCCcce
Confidence            4455677899999974   2244444  3578888887765443332 2  3356789999  9988875442 23    


Q ss_pred             cEEEEEccCCccCCCCcccee-cc--cceEEEEeeccCCccceecCCCCceEEEecc---Cceee-eccCCCC-C-eEec
Q 024245           87 TVKCWDIENGGLSSNPSLTIK-TN--SYHFCKLSLVKEPYANAKQANEPKDCYEREV---GETVD-TDSLCDS-K-DDVP  157 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~-~-~~~s  157 (270)
                      .+..|++..+....  ...+. ..  ......++.++..........+...+|.+..   +.... ....... . ..||
T Consensus       258 ~~~~~~~~~g~~g~--~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        258 FIQSFSLETGAIGK--PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             eEEEeecccCCCCc--ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence            34447766532100  01111 11  1111122222222221111223334444321   11111 1111111 2 8999


Q ss_pred             CCCCeEEEEecCC-CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--CCcEE
Q 024245          158 AEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSIL  234 (270)
Q Consensus       158 ~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--dg~i~  234 (270)
                      |||+.++.++... ...|.+||+.+++... +..       +     ........ |+|   ||+.+++++..  ...|+
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~-------~-----~~~~~~p~-wSp---DG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT-------S-----PENKESPS-WAI---DSLHLVYSAGNSNESELY  398 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC-------C-----CCCccceE-ECC---CCCEEEEEECCCCCceEE
Confidence            9999877643321 2479999998877543 331       1     11233455 998   45534444443  35688


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +||+.. ++...... ..+.+...+|+|-.
T Consensus       399 ~vdl~~-g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        399 LISLIT-KKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             EEECCC-CCEEEeec-CCCcccCceecCCC
Confidence            889886 54433333 34567788898854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.21  E-value=4e-08  Score=76.05  Aligned_cols=218  Identities=9%  Similarity=0.039  Sum_probs=119.5

Q ss_pred             EeCCCCEEEEecC----------CCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeCCCCCEEEEEe-C-CCcE
Q 024245           26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV   88 (270)
Q Consensus        26 ~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-d~~i   88 (270)
                      ++|||+.|+.+..          +..|.+||..+.+.+..+.....+     ..-..++++|  +|++|+... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence            8999997776654          788999999999999888743210     1234789999  999988766 3 6899


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEec-cCceeee---ccCCCCC-----eEecC-
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE-VGETVDT---DSLCDSK-----DDVPA-  158 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-----~~~s~-  158 (270)
                      .+.|+.+++.+.    .+.... ....+........ .....+....+.+. .++....   .+.....     -.|++ 
T Consensus       131 ~VvD~~~~kvv~----ei~vp~-~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~  204 (352)
T TIGR02658       131 GVVDLEGKAFVR----MMDVPD-CYHIFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK  204 (352)
T ss_pred             EEEECCCCcEEE----EEeCCC-CcEEEEecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence            999999987654    232211 1111111111111 11111111111111 1111100   1111000     13455 


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcc-----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-c----
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-Y----  228 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~----  228 (270)
                      +|..+++ +.  .|+|.+.|+....     ....+....     .-.....+....++ ++|+  .++ +++.. .    
T Consensus       205 dg~~~~v-s~--eG~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~d--g~~-lyV~~~~~~~~  272 (352)
T TIGR02658       205 SGRLVWP-TY--TGKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRA--RDR-IYLLADQRAKW  272 (352)
T ss_pred             CCcEEEE-ec--CCeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCC--CCE-EEEEecCCccc
Confidence            7876665 44  3999999965432     222222100     00011112222255 8885  233 33322 1    


Q ss_pred             ----CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          229 ----EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       229 ----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                          ..+.|.++|..+ ++.+..+.. ...+..++++|||+
T Consensus       273 thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgk  311 (352)
T TIGR02658       273 THKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAK  311 (352)
T ss_pred             cccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCC
Confidence                225799999999 888888774 46899999999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.1e-10  Score=97.51  Aligned_cols=79  Identities=18%  Similarity=0.400  Sum_probs=70.8

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .+.||++.|..+.|+-||+++++.|.|.++++|++++.+... ...+|.  ++|..+.|.|  +  .++|++.|-+.++|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--aRvw~~~~~~--n--~i~t~gedctcrvW  243 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--ARVWACCFLP--N--RIITVGEDCTCRVW  243 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc--ceeEEEEecc--c--eeEEeccceEEEEE
Confidence            588999999999999999999999999999999999987666 666787  7799999999  4  99999999999999


Q ss_pred             EccCCc
Q 024245           92 DIENGG   97 (270)
Q Consensus        92 d~~~~~   97 (270)
                      +.+...
T Consensus       244 ~~~~~~  249 (967)
T KOG0974|consen  244 GVNGTQ  249 (967)
T ss_pred             ecccce
Confidence            766543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.7e-09  Score=82.74  Aligned_cols=73  Identities=18%  Similarity=0.332  Sum_probs=59.2

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-----------CCcEE
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVK   89 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------d~~i~   89 (270)
                      =+-+.|||-|.||+|-...| |.+|--++...++.|. |   -.|.-+.|||  +.++|+|-+-           ...+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H---p~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~  285 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H---PGVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLI  285 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C---CCceeeecCC--ccceEEEecCCccccCcccCCCceEE
Confidence            46789999999999998887 9999877777777764 4   3389999999  8899997542           25799


Q ss_pred             EEEccCCccCC
Q 024245           90 CWDIENGGLSS  100 (270)
Q Consensus        90 ~wd~~~~~~~~  100 (270)
                      |||+.+|...+
T Consensus       286 IWDI~tG~lkr  296 (698)
T KOG2314|consen  286 IWDIATGLLKR  296 (698)
T ss_pred             EEEccccchhc
Confidence            99999997654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.14  E-value=7.5e-09  Score=83.88  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEE
Q 024245           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (270)
Q Consensus        39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  115 (270)
                      ...|.++|...... +.+..+.  ..+....|+|  +|++|+.+..+   ..|.+||+.+++...  +........    
T Consensus       169 ~~~l~~~d~~g~~~-~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~----  237 (417)
T TIGR02800       169 RYELQVADYDGANP-QTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNG----  237 (417)
T ss_pred             cceEEEEcCCCCCC-EEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCcc----
Confidence            34688888764433 4444444  4588999999  99998876543   479999998764321  100000000    


Q ss_pred             EeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC-CCceEEEEeCCCcceeeeeccCcCC
Q 024245          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                                                           ..+|+|+|+.++++... .+..|++||+.+++.. .+.     
T Consensus       238 -------------------------------------~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-----  274 (417)
T TIGR02800       238 -------------------------------------APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-----  274 (417)
T ss_pred             -------------------------------------ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-----
Confidence                                                 04599999877754322 2346888999876543 333     


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                         .+.    ....... |+|   ||+ .|+.. ..++  .|+++|+.+ ++ ...+..+...+...+|+|||++|-
T Consensus       275 ---~~~----~~~~~~~-~s~---dg~-~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       275 ---NGP----GIDTEPS-WSP---DGK-SIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             ---CCC----CCCCCEE-ECC---CCC-EEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEE
Confidence               121    1223344 888   455 55444 3344  588888876 43 344444556677899999998763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=6.5e-09  Score=84.47  Aligned_cols=159  Identities=16%  Similarity=0.118  Sum_probs=92.0

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC--cEEEEEccCCccCCCCccceecccceEEEEe
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (270)
                      .|.++|...... +.+....  ..+.+..|+|  +|+.|+..+. ++  .|.+||+.+++...  +...+....      
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------  265 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------  265 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence            677778765433 3343344  5688999999  9998886543 33  57888887764311  111111000      


Q ss_pred             eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCC
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~  195 (270)
                                                         ..+|+|||+.++++ .+.++  .|+++|+.+++.. .+.      
T Consensus       266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------  302 (448)
T PRK04792        266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------  302 (448)
T ss_pred             -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence                                               04599999987764 33455  4788888876643 343      


Q ss_pred             CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                        .+    ........ |+|+   |+.++++...++  .|+++|+.+ ++. ..+..........+|+|||++|
T Consensus       303 --~~----~~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        303 --RH----RAIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             --cC----CCCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEE
Confidence              12    11234455 9984   553444444444  466677776 443 3332222334567899999876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=7.8e-10  Score=85.56  Aligned_cols=209  Identities=14%  Similarity=0.132  Sum_probs=132.0

Q ss_pred             cccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceEEEEEeeCCCCCEEEEEeCCC
Q 024245           12 AVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..+..|.+.|..++.-|+. .-|.+++.|+.+.-.|+..+.+...+......    -...+++..|. +.+.+++++.|.
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dq  304 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR-NTNEFAVGGSDQ  304 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC-CccccccCChhh
Confidence            3455699999999999954 47899999999999999877554444321111    24678899996 447899999999


Q ss_pred             cEEEEEccCCccCC--CCccc------eecccceEEEEeeccC-CccceecCCCCceEEEec--cC----------ceee
Q 024245           87 TVKCWDIENGGLSS--NPSLT------IKTNSYHFCKLSLVKE-PYANAKQANEPKDCYERE--VG----------ETVD  145 (270)
Q Consensus        87 ~i~~wd~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~----------~~~~  145 (270)
                      .+++||.+.-....  .++..      .......+..+..... ...........+.++.-.  .+          ..+.
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            99999987543221  00001      0122222222222211 111111111122222111  11          1223


Q ss_pred             eccCCCCC------e-EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          146 TDSLCDSK------D-DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       146 ~~~~~~~~------~-~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      ..+.||.+      + -|-|...++  ++|++-|.|.||+-.+++.++-++.        -    ...|.|+. =+|..+
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyV--vSGSDCGhIFiW~K~t~eii~~Meg--------D----r~VVNCLE-pHP~~P  449 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYV--VSGSDCGHIFIWDKKTGEIIRFMEG--------D----RHVVNCLE-PHPHLP  449 (559)
T ss_pred             hhhcccccccccceeeeccCccceE--EecCccceEEEEecchhHHHHHhhc--------c----cceEeccC-CCCCCc
Confidence            34778877      3 345777644  3899999999999999999888873        2    33788887 777655


Q ss_pred             CCceEEEEecCCCcEEEEEcCC
Q 024245          219 QGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                          .||+.+-|..|+||--.+
T Consensus       450 ----vLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  450 ----VLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ----hhhccCCccceeeecCCc
Confidence                999999999999998643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=3.2e-09  Score=80.31  Aligned_cols=162  Identities=9%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEeccCc-
Q 024245           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGE-  142 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-  142 (270)
                      ...+..++  ++.+|+.+..+....++++.......++...... +.....++... ..........+....+++.... 
T Consensus        65 ~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            44555667  7788888888888777777654321111111111 11111111111 1111122222333334433322 


Q ss_pred             eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          143 TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       143 ~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      .......||..    ++++||++.++  ++..|..|+|-....-..+..+..       ||.    ..|..++ .-+   
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~Iesfcl-------GH~----eFVS~is-l~~---  204 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCL-------GHK----EFVSTIS-LTD---  204 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhcc-------ccH----hheeeee-ecc---
Confidence            33335567766    89999997554  688999999998887777777776       774    4666665 554   


Q ss_pred             CCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                       ++ .|++||.|++|++||+++ ++.+.++.
T Consensus       205 -~~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d  232 (390)
T KOG3914|consen  205 -NY-LLLSGSGDKTLRLWDITS-GKLLDTCD  232 (390)
T ss_pred             -Cc-eeeecCCCCcEEEEeccc-CCcccccc
Confidence             44 789999999999999999 66655554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.10  E-value=3.1e-08  Score=85.09  Aligned_cols=237  Identities=14%  Similarity=0.074  Sum_probs=128.8

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--c-----eeEEEeecCCCcceEEE-EEeeCCCCC-EEEEEeCCCcE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--R-----TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQGRDGTV   88 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~-----~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~~~d~~i   88 (270)
                      ...+.++...+.+..+|.++.||.|++.+++..  +     +.+....+.. +.+.++ +|... .+. .|+.+..-+.|
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYATDLSRI 1175 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEEEeccce
Confidence            567888888899999999999999999998752  1     2222222322 334444 44332 334 67788888899


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCC-ccceecCCCCceEEEeccCceeeecc-CCCCC---eEecCCCC--
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDS-LCDSK---DDVPAEGP--  161 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~s~~~~--  161 (270)
                      ..||+++...............  ...+..+... ........+...+||++-+..+.... ..+..   +..+|-.+  
T Consensus      1176 v~~D~r~~~~~w~lk~~~~hG~--vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGL--VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred             EEecchhhhhHHhhhcCccccc--eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC
Confidence            9999988754431112222222  2222222222 22334445566779998776555433 22222   44444332  


Q ss_pred             eEEEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCcccCC-----CceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          162 KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       162 ~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      ...+++++ ..+.|.+|++.+|.+...+..........+..+.     ...+-... ....+.++  ++.+|+.|..|+.
T Consensus      1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~--~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNG--FLLTGGSDMKIRK 1330 (1431)
T ss_pred             ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCc--eeeecCCccceee
Confidence            34444555 6789999999999877666531000000111111     00000000 11111122  8999999999999


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEee
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s  261 (270)
                      ||...+...-....+.+........+
T Consensus      1331 wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1331 WDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred             ccCCCcccccccccCccccccccchh
Confidence            99987544323333333333333333

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=4.1e-08  Score=77.51  Aligned_cols=218  Identities=16%  Similarity=0.207  Sum_probs=129.4

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-----EeCCCcEEEEEccCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG   96 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~   96 (270)
                      ++..|+.|..+. +--..+.+.+|++.+.+.+.. ..|.  ..|..+.++|......+++     .+.-+.|++|.....
T Consensus       129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~-kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQH-KLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhh-hhhhcceEEEEecCCccceee-eeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            688888876533 333456899999987433321 2234  5589999998322234442     455568999988633


Q ss_pred             ccCCCCccceecc-cceEEEEeec-------------cCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCC
Q 024245           97 GLSSNPSLTIKTN-SYHFCKLSLV-------------KEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAE  159 (270)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~  159 (270)
                      ....  ....+.. ....+.+.+.             .+.............++.+. +......+.....   +.|+|+
T Consensus       205 ~~~~--~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s  281 (566)
T KOG2315|consen  205 GQHQ--PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPS  281 (566)
T ss_pred             cccc--hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCC
Confidence            2211  0000000 0000111111             11111111122223334444 3444444433333   999999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec--CCCcEEEEE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWD  237 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~--~dg~i~vwd  237 (270)
                      ++.+.++-|-.-..+.|||++ +.++..+..              +.-.++- |+|.   |++.+++|-  .-|.|-|||
T Consensus       282 ~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  282 GREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceE-ECCC---CCEEEEeecCCCCCceEEEe
Confidence            998888888888899999998 788887763              3445555 9995   664444443  348899999


Q ss_pred             cCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          238 IRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.+ .+++..+...  .-+-+.|+|||+++-
T Consensus       343 v~n-~K~i~~~~a~--~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  343 VPN-RKLIAKFKAA--NTTVFEWSPDGEYFL  370 (566)
T ss_pred             ccc-hhhccccccC--CceEEEEcCCCcEEE
Confidence            999 8888888753  345689999999863

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.4e-08  Score=80.35  Aligned_cols=160  Identities=13%  Similarity=0.082  Sum_probs=94.1

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (270)
                      .|.++|...+.. +.+..+.  ..+....|+|  +|+.|+..+.+   ..|.+||+.+++...  +....+...      
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~------  246 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNG------  246 (430)
T ss_pred             EEEEECCCCCCc-eEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcC------
Confidence            477888775444 3444444  5689999999  99988765543   368888998775322  111111000      


Q ss_pred             eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCC
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~  195 (270)
                                                         ...|+|||+.++++. +.++  .|++||+.+++.. .+.      
T Consensus       247 -----------------------------------~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~-~lt------  283 (430)
T PRK00178        247 -----------------------------------APAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLS-RVT------  283 (430)
T ss_pred             -----------------------------------CeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeE-Ecc------
Confidence                                               045999998877543 3334  6888899877643 343      


Q ss_pred             CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                        .+    ........ |+|+   |+.++++...+|  .|+++|+.+ ++. ..+..........+|+|||+.|.
T Consensus       284 --~~----~~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        284 --NH----PAIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             --cC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEE
Confidence              12    11233445 9985   542444444444  577778776 443 22222222344578999998763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=8.6e-10  Score=89.49  Aligned_cols=208  Identities=14%  Similarity=0.120  Sum_probs=136.8

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .-++|.||.+.|.-+.|+.+.+.|-+...+|.|.||-+.+++..........++-|.+++|+.  +|..+...-.||.|.
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI  140 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence            457899999999999999999999999999999999999887766655444447799999999  999999999999998


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +=.++.++...+   .+++.....                                        +.|++|.+.+++  +-
T Consensus       141 VGsvdGNRIwgK---eLkg~~l~h----------------------------------------v~ws~D~~~~Lf--~~  175 (1189)
T KOG2041|consen  141 VGSVDGNRIWGK---ELKGQLLAH----------------------------------------VLWSEDLEQALF--KK  175 (1189)
T ss_pred             EEeeccceecch---hcchheccc----------------------------------------eeecccHHHHHh--hh
Confidence            877766543321   111111000                                        448888876664  44


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeee----ecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ----AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~----~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      .+|.+++||.. |....+++..+.....|-.......+-.+.    .+.|..+|.. .|+.+-..|.+.+..-.+...|+
T Consensus       176 ange~hlydnq-gnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  176 ANGETHLYDNQ-GNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             cCCcEEEeccc-ccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCe
Confidence            57999999976 332222221110000011000001111111    1222233444 89999999999998766645565


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..-.+  ..+..+.|+++|.+|.
T Consensus       254 v~dtg--m~~vgakWnh~G~vLA  274 (1189)
T KOG2041|consen  254 VVDTG--MKIVGAKWNHNGAVLA  274 (1189)
T ss_pred             EEecc--cEeecceecCCCcEEE
Confidence            44443  5788899999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.5e-07  Score=75.61  Aligned_cols=210  Identities=7%  Similarity=-0.035  Sum_probs=113.9

Q ss_pred             cEEEEEEeCCCCE-EEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCC--CcEEEEE
Q 024245           20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD   92 (270)
Q Consensus        20 ~v~~~~~s~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--~~i~~wd   92 (270)
                      .+....|+|||+. ++..+.   +..|.++|+.+++...... ..  +.+....|+|  ||+.|+ +.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence            6678999999984 554333   3569999998887665443 22  4466788999  988765 44434  4677778


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCCeEecCCCCeEEEEecCC
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  170 (270)
                      +.+++..+  +..... ......++.++..........+...+  +++..++..+....+.....|+|+|+.+++++...
T Consensus       264 l~~g~~~~--LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        264 TNTKTLTQ--ITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCCcEEE--cccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCC
Confidence            87775322  211111 11112233333322222222222233  45555554343333333378999999887755432


Q ss_pred             C-------ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc--EEEEEcCCC
Q 024245          171 L-------SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNP  241 (270)
Q Consensus       171 d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~--i~vwd~~~~  241 (270)
                      +       ..|.+.|+.+++. ..+..       +      ....... |+|   ||+..+++....+.  +.+.++.  
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~-------~------~~~~~p~-~SP---DG~~I~f~~~~~~~~~L~~~~l~--  400 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYI-RRLTA-------N------GVNQFPR-FSS---DGGSIMFIKYLGNQSALGIIRLN--  400 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCe-EECCC-------C------CCcCCeE-ECC---CCCEEEEEEccCCcEEEEEEecC--
Confidence            1       3688889887764 34441       1      0112344 999   46534444433444  5555665  


Q ss_pred             CcceeeeeccCCCeeE
Q 024245          242 GIPLTAMKVHLEPGLE  257 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~  257 (270)
                      +.....+....+.+..
T Consensus       401 g~~~~~l~~~~g~~~~  416 (419)
T PRK04043        401 YNKSFLFPLKVGKIQS  416 (419)
T ss_pred             CCeeEEeecCCCccCC
Confidence            4444444433344443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.08  E-value=1.3e-08  Score=80.64  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=110.2

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      ...++-|...|.|.+|++..++....+....+.++|.++.++.  +-..|.|++.|+.+..|+.......+    .....
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~----~~~~~  143 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIR----IWKEQ  143 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeee----eeccC
Confidence            3467888899999999999999999888666658899999998  77899999999999999998876533    11111


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .....                                      .++++|||..++  +++  +.|++||+.+++.+.+|.
T Consensus       144 ~~~~~--------------------------------------sl~is~D~~~l~--~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  144 KPLVS--------------------------------------SLCISPDGKILL--TAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             CCccc--------------------------------------eEEEcCCCCEEE--ecc--ceEEEEEccCceEEEEec
Confidence            11110                                      056889987665  354  789999999999999999


Q ss_pred             cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                              ||..+.+....... +...  -|.++|.+...+.-+.+|-+..
T Consensus       182 --------gh~s~v~t~~f~~~-~~g~--~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  182 --------GHGSPVRTLSFTTL-IDGI--IGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --------CCCcceEEEEEEEe-cccc--ccceeeeccccccceeEEEEEc
Confidence                    89664433322221 2221  3564666667777788887764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=1.3e-07  Score=74.12  Aligned_cols=223  Identities=12%  Similarity=0.042  Sum_probs=127.1

Q ss_pred             ccEEEEEEeCCCCEEEEecCC---------------CcEEEEeCCCCceeEEEeecC-----------------------
Q 024245           19 ASVTDVCFHQTKPILFAGTTG---------------GELRIWDTVQHRTVSSSWVHS-----------------------   60 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~-----------------------   60 (270)
                      ..|..+.|+|++.+|.+=++.               ..+.+||+.++..+..+....                       
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            568889999999999986543               359999998876554332111                       


Q ss_pred             --------------------CCcceEEEEEeeCCCCCEEE-----EEeCCCcEEEEEccCCccCCCCccceecccceEEE
Q 024245           61 --------------------AAHGIVSVATGPSIGLNKVI-----SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (270)
Q Consensus        61 --------------------~~~~v~~~~~~~~~~~~~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  115 (270)
                                          ....|....|+|..++..|+     ..+.++++++|.+..+..+.  ...+-  ....+.
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~--tk~lf--k~~~~q  227 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV--TKNLF--KVSGVQ  227 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee--eeeeE--eecccE
Confidence                                01346666777733333343     24667788888876554322  00110  011111


Q ss_pred             EeeccCC------------ccceecCCCCceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          116 LSLVKEP------------YANAKQANEPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       116 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      +......            ........+...++++........ .+.+... .+|.|.++.+.+++|-.+..+.++|++.
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            1111111            011111122233344442222221 1222222 8999999999988888999999999995


Q ss_pred             cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWDIRNPGIPLTAMKVHLEPGLEC  258 (270)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  258 (270)
                      . ....+..              ..-..+. |+|.   ++ +++.++-   .|.+-+||......++..+.+.  ...-+
T Consensus       308 N-l~~~~Pe--------------~~rNT~~-fsp~---~r-~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~  365 (561)
T COG5354         308 N-LRFYFPE--------------QKRNTIF-FSPH---ER-YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYC  365 (561)
T ss_pred             c-eEEecCC--------------ccccccc-ccCc---cc-EEEEecCCccccceEEeccCCceEEEEEeecC--CceEe
Confidence            4 5555542              1223333 9995   55 6666554   4789999988745555566653  34557


Q ss_pred             EeecCCCce
Q 024245          259 SMWRNPITM  267 (270)
Q Consensus       259 ~~s~~g~~l  267 (270)
                      .|+|||+++
T Consensus       366 ~wspd~qF~  374 (561)
T COG5354         366 DWSPDGQFY  374 (561)
T ss_pred             eccCCceEE
Confidence            899999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.06  E-value=8.4e-09  Score=75.12  Aligned_cols=178  Identities=15%  Similarity=0.141  Sum_probs=111.1

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      ..++.|++.+..++++..+|.+.+-+.....  .++.++.|.  -.+...+|+.. +.+.+.+|+.|+.+..||++..+ 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He--~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~-  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE--FEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPK-  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc--eeeeeeecccC-CCceEEecCCCceEEEEEecCCc-
Confidence            4578899988899999999999966655443  344778888  44888999875 34889999999999999999332 


Q ss_pred             CCCCccc-eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEE
Q 024245           99 SSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (270)
Q Consensus        99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iw  177 (270)
                        ..++. .+.+....+.+.                                      -+|..++.++ +|++|..|++|
T Consensus       200 --~~i~~n~kvH~~GV~SI~--------------------------------------ss~~~~~~I~-TGsYDe~i~~~  238 (339)
T KOG0280|consen  200 --TFIWHNSKVHTSGVVSIY--------------------------------------SSPPKPTYIA-TGSYDECIRVL  238 (339)
T ss_pred             --ceeeecceeeecceEEEe--------------------------------------cCCCCCceEE-Eeccccceeee
Confidence              11111 222233333222                                      2232234443 89999999999


Q ss_pred             eCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC-c---ceeeeeccC
Q 024245          178 DLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVHL  252 (270)
Q Consensus       178 d~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-~---~~~~~~~~~  252 (270)
                      |.| .++++..-.             ..+-++.+. ++|... ++ +|+++ .-.-.+|-+..... +   .....+.|.
T Consensus       239 DtRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~~-lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hd  301 (339)
T KOG0280|consen  239 DTRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-HR-LLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHD  301 (339)
T ss_pred             ehhcccCccccCc-------------cccceEEEE-ecchhh-hH-HHHHH-HhcCceEEEecccccchheeeecccccc
Confidence            999 456655433             457899998 998632 22 34444 33345555555421 2   233344555


Q ss_pred             CCeeEEEe
Q 024245          253 EPGLECSM  260 (270)
Q Consensus       253 ~~v~~~~~  260 (270)
                      +-+..-.|
T Consensus       302 Sl~YG~DW  309 (339)
T KOG0280|consen  302 SLCYGGDW  309 (339)
T ss_pred             ceeecccc
Confidence            44444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.06  E-value=4.2e-07  Score=71.62  Aligned_cols=222  Identities=13%  Similarity=0.165  Sum_probs=119.1

Q ss_pred             ccEEEEEEeCCCCEEEEecC-CCcEEEEeCCC-CceeEE---Ee--ec------CCCcceEEEEEeeCCCCCEEEEEe-C
Q 024245           19 ASVTDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRTVSS---SW--VH------SAAHGIVSVATGPSIGLNKVISQG-R   84 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~---~~--~~------~~~~~v~~~~~~~~~~~~~l~s~~-~   84 (270)
                      .....++++|++++|+++.. +|.|.++++.. +.....   +.  +.      .......++.|+|  +++++++.. .
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG  164 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLG  164 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecC
Confidence            44567899999998888864 89999999986 433322   21  00      1114478999999  988887654 3


Q ss_pred             CCcEEEEEccCCc--cCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEec--cCc--ee---ee---ccCC
Q 024245           85 DGTVKCWDIENGG--LSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYERE--VGE--TV---DT---DSLC  150 (270)
Q Consensus        85 d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~--~~---~~---~~~~  150 (270)
                      ...|.+|++....  +.......++.. .....+.+.......  .....+.+..+++.  .+.  .+   ..   ...+
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  243 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG  243 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence            4589999997764  211001111111 112222232222222  22233444455555  221  11   11   1112


Q ss_pred             CCC---eEecCCCCeEEEEecCCCceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          151 DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       151 ~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      ...   ++++|||++++++.. .+++|.+|++.  +++  .+..+..            .......+. ++|   +|+++
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~------------~G~~Pr~~~-~s~---~g~~l  306 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPT------------GGKFPRHFA-FSP---DGRYL  306 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEE------------SSSSEEEEE-E-T---TSSEE
T ss_pred             cCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeC------------CCCCccEEE-EeC---CCCEE
Confidence            212   899999998887554 47899999993  233  2222221            112355666 888   46645


Q ss_pred             EEEecCCCcEEEEEcCCC-Ccceeeee-ccCCCeeEEEe
Q 024245          224 VLAGYEDGSILVWDIRNP-GIPLTAMK-VHLEPGLECSM  260 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~-~~~~~~~~-~~~~~v~~~~~  260 (270)
                      +++...++.|.+|++... +.....-. ..-....||.|
T Consensus       307 ~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  307 YVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            555567789999987531 44322221 12345667766

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.04  E-value=2.1e-09  Score=79.85  Aligned_cols=87  Identities=20%  Similarity=0.403  Sum_probs=73.7

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..++.++++|.+.+++++|.+...+|.+|..|..+.+||+...+ ....+.+|.  +.|..+...+  -...+++++.||
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~--~kV~~l~~~~--~t~~l~S~~edg  262 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN--DKVQALSYAQ--HTRQLISCGEDG  262 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch--hhhhhhhhhh--hheeeeeccCCC
Confidence            46788999999999999999999999999999999999997543 344667777  4588888877  668899999999


Q ss_pred             cEEEEEccCCcc
Q 024245           87 TVKCWDIENGGL   98 (270)
Q Consensus        87 ~i~~wd~~~~~~   98 (270)
                      .|.+||++..+.
T Consensus       263 ~i~~w~mn~~r~  274 (404)
T KOG1409|consen  263 GIVVWNMNVKRV  274 (404)
T ss_pred             eEEEEeccceee
Confidence            999999976543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=5.4e-08  Score=76.89  Aligned_cols=168  Identities=13%  Similarity=0.172  Sum_probs=105.5

Q ss_pred             EEEEEeCCCC-EE--EEecCCC---------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE--EEeCCCc
Q 024245           22 TDVCFHQTKP-IL--FAGTTGG---------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI--SQGRDGT   87 (270)
Q Consensus        22 ~~~~~s~~~~-~l--~s~~~dg---------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~d~~   87 (270)
                      ..+.|++-|. +|  ++..-|.         ++++.+++..++.-.+.. .  ++|.++.|+|  ++.-++  -|-.-..
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~--GPVhdv~W~~--s~~EF~VvyGfMPAk  295 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-E--GPVHDVTWSP--SGREFAVVYGFMPAK  295 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-C--CCceEEEECC--CCCEEEEEEecccce
Confidence            4577877665 22  2332232         567777663333333322 2  7899999999  876655  4556678


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEe
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  167 (270)
                      +.+||++..     +++.+...+...                                        +-|+|.|..+++ +
T Consensus       296 vtifnlr~~-----~v~df~egpRN~----------------------------------------~~fnp~g~ii~l-A  329 (566)
T KOG2315|consen  296 VTIFNLRGK-----PVFDFPEGPRNT----------------------------------------AFFNPHGNIILL-A  329 (566)
T ss_pred             EEEEcCCCC-----EeEeCCCCCccc----------------------------------------eEECCCCCEEEE-e
Confidence            899998753     233333222221                                        448999987765 4


Q ss_pred             cC--CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC------CCcEEEEEcC
Q 024245          168 GE--QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIR  239 (270)
Q Consensus       168 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~------dg~i~vwd~~  239 (270)
                      |-  -.|.|-|||+.+.+++..+..        -      ..+-+ .|+|   ||+ +++|+..      |+.++||+..
T Consensus       330 GFGNL~G~mEvwDv~n~K~i~~~~a--------~------~tt~~-eW~P---dGe-~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKLIAKFKA--------A------NTTVF-EWSP---DGE-YFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ecCCCCCceEEEeccchhhcccccc--------C------CceEE-EEcC---CCc-EEEEEeccccEEecCCeEEEEec
Confidence            43  358899999999888888872        1      22223 4999   566 6776653      7889999987


Q ss_pred             CCCcceeeeeccCCCeeEEEeec
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                        |..+..-...+ ..+.+.|-|
T Consensus       391 --G~~l~~~~f~s-EL~qv~W~P  410 (566)
T KOG2315|consen  391 --GSLLHEKMFKS-ELLQVEWRP  410 (566)
T ss_pred             --CceeehhhhhH-hHhheeeee
Confidence              55554443222 577788876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=2.7e-09  Score=55.15  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=35.5

Q ss_pred             CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ++++.++.+|.  ..|.+|+|+|  ++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~--~~i~~i~~~~--~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHS--SSINSIAWSP--DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSS--SSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCC--CcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence            36788899998  6699999999  899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.95  E-value=2.4e-07  Score=66.94  Aligned_cols=185  Identities=14%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             EEEEEeC-----CCCEEEEecCCCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEEc
Q 024245           22 TDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        22 ~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~   93 (270)
                      +.|.|-|     ...+||.|+..|...+|...+.+- .+....+.     ..+......  ..-.+..++.|.++++.++
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn-----n~v~~~~r~cd~~~~~~i~sndht~k~~~~  145 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN-----NDVTLVKRYCDLKFPLNIASNDHTGKTMVV  145 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc-----cchhhhhhhcccccceeeccCCcceeEEEE
Confidence            4566666     234899999999999999986543 33333332     222221100  1134667888999999998


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~  173 (270)
                      +.+....    ..+......  .+                                    ++++++++.+. ..| +...
T Consensus       146 ~~~s~~~----~~h~~~~~~--ns------------------------------------~~~snd~~~~~-~Vg-ds~~  181 (344)
T KOG4532|consen  146 SGDSNKF----AVHNQNLTQ--NS------------------------------------LHYSNDPSWGS-SVG-DSRR  181 (344)
T ss_pred             ecCcccc----eeeccccce--ee------------------------------------eEEcCCCceEE-Eec-CCCc
Confidence            7654321    111111110  01                                    45788887544 345 4577


Q ss_pred             EEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----
Q 024245          174 VEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----  248 (270)
Q Consensus       174 i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~----  248 (270)
                      |..|.+.. ++.+..+..          .+....-.+.. |+....    .+|++..||++.|||++..+.+....    
T Consensus       182 Vf~y~id~~sey~~~~~~----------a~t~D~gF~~S-~s~~~~----~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr  246 (344)
T KOG4532|consen  182 VFRYAIDDESEYIENIYE----------APTSDHGFYNS-FSENDL----QFAVVFQDGTCAIYDVRNMATPMAEISSTR  246 (344)
T ss_pred             ceEEEeCCccceeeeeEe----------cccCCCceeee-eccCcc----eEEEEecCCcEEEEEecccccchhhhcccC
Confidence            88888763 333333221          11122223333 775422    89999999999999999866665544    


Q ss_pred             eccCCCeeEEEeecCCC----ceecC
Q 024245          249 KVHLEPGLECSMWRNPI----TMSEH  270 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~----~ls~~  270 (270)
                      ..|.+++..+.|++-|.    ++|||
T Consensus       247 p~hnGa~R~c~Fsl~g~lDLLf~sEh  272 (344)
T KOG4532|consen  247 PHHNGAFRVCRFSLYGLLDLLFISEH  272 (344)
T ss_pred             CCCCCceEEEEecCCCcceEEEEecC
Confidence            35889999999998554    36676

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=6.2e-06  Score=62.29  Aligned_cols=241  Identities=12%  Similarity=0.086  Sum_probs=135.3

Q ss_pred             cccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCC--CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK   89 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~   89 (270)
                      .+.+.++-|+|+|+++.|+++-.   +|.|..|.+..  |+....-.......+-..+++++  ++++|+++.. .|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence            35677899999999999988755   47788887764  44332211111113358899999  9899987764 57899


Q ss_pred             EEEccCCccCCCCccceeccc-----------ceEEEEeeccCCccceecCCCCc--eEEEeccCceeee----ccC--C
Q 024245           90 CWDIENGGLSSNPSLTIKTNS-----------YHFCKLSLVKEPYANAKQANEPK--DCYEREVGETVDT----DSL--C  150 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~--~  150 (270)
                      ++-+.....+..++.......           .+...+.  .........+-+.+  .++++..+.....    ...  |
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t--P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G  192 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT--PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG  192 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeC--CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence            999966333322222221111           1122222  22222333333333  3456664432211    111  2


Q ss_pred             CCCeEecCCCCeEEEEecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       151 ~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                      ...+.|+|+++...+ ...-+++|-+|..... ..+..++.-. .......  ......++. .+|   ||+++.++--.
T Consensus       193 PRHi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~--g~~~~aaIh-is~---dGrFLYasNRg  264 (346)
T COG2706         193 PRHIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFT--GTNWAAAIH-ISP---DGRFLYASNRG  264 (346)
T ss_pred             cceEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeec-cCccccC--CCCceeEEE-ECC---CCCEEEEecCC
Confidence            222999999997776 4677999999998763 2222222100 0000111  123444565 777   67744444444


Q ss_pred             CCcEEEEEcCCCCcceeee---eccCCCeeEEEeecCCCcee
Q 024245          230 DGSILVWDIRNPGIPLTAM---KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ...|-++.+...+..+...   ..+......+.|+|+|.+|-
T Consensus       265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            5588888887644433333   23444578899999988763

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=9.2e-09  Score=76.60  Aligned_cols=175  Identities=10%  Similarity=0.112  Sum_probs=109.4

Q ss_pred             EEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC-C
Q 024245           25 CFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS-N  101 (270)
Q Consensus        25 ~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~  101 (270)
                      +|+-  .|-. ++.+.+-.|.+-|++++-.. .|. ..  +.|.++.|..  .++++..|+.+|.|...|++.+..-. .
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sk--sDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SK--SDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGW  290 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeeccccc-ccc-cc--hhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCc
Confidence            5553  2333 44455566888888876433 333 23  4599999988  77999999999999999998763211 0


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      +...+ .+....+.+..                                     +--+++++++  ++.+|.|++||++.
T Consensus       291 ~a~rl-yh~Ssvtslq~-------------------------------------Lq~s~q~Lma--S~M~gkikLyD~R~  330 (425)
T KOG2695|consen  291 CAQRL-YHDSSVTSLQI-------------------------------------LQFSQQKLMA--SDMTGKIKLYDLRA  330 (425)
T ss_pred             ceEEE-EcCcchhhhhh-------------------------------------hccccceEee--ccCcCceeEeeehh
Confidence            00000 01111111100                                     1113455653  55789999999998


Q ss_pred             cce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC----CC
Q 024245          182 AER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL----EP  254 (270)
Q Consensus       182 ~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~  254 (270)
                      -++   +.+++        ||.+...-....   ..|  .+|  .+++++.|...+||.++. +..+.+++...    ..
T Consensus       331 ~K~~~~V~qYe--------GHvN~~a~l~~~---v~~--eeg--~I~s~GdDcytRiWsl~~-ghLl~tipf~~s~~e~d  394 (425)
T KOG2695|consen  331 TKCKKSVMQYE--------GHVNLSAYLPAH---VKE--EEG--SIFSVGDDCYTRIWSLDS-GHLLCTIPFPYSASEVD  394 (425)
T ss_pred             hhcccceeeee--------cccccccccccc---ccc--ccc--eEEEccCeeEEEEEeccc-CceeeccCCCCcccccc
Confidence            777   88888        886533222211   233  234  788899999999999998 88888877533    24


Q ss_pred             eeEEEeec
Q 024245          255 GLECSMWR  262 (270)
Q Consensus       255 v~~~~~s~  262 (270)
                      +.+++|..
T Consensus       395 ~~sv~~~s  402 (425)
T KOG2695|consen  395 IPSVAFDS  402 (425)
T ss_pred             ccceehhc
Confidence            56677654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=1.6e-08  Score=75.29  Aligned_cols=185  Identities=14%  Similarity=0.198  Sum_probs=112.3

Q ss_pred             ccccc-ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEE--eecCCC---cceEEEEEeeCCCCCEEEEE
Q 024245           10 PVAVL-RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSS--WVHSAA---HGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        10 ~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~--~~~~~~---~~v~~~~~~~~~~~~~l~s~   82 (270)
                      |.+.+ .+|+--|++++++.|++.++++. |=.|.+|+++-- +....+  +.+..+   .-|++..|+|.+. +.++-.
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YS  232 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYS  232 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEe
Confidence            33444 36889999999999999998875 567999998642 222222  222110   3488999999644 778888


Q ss_pred             eCCCcEEEEEccCCccCCCCcccee--cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  160 (270)
                      +..|+|++-|++...+-......+.  ..+....-++                            .....-..+.|+.+|
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sG  284 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSG  284 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCC
Confidence            8899999999986543221111111  1111100000                            000000016799999


Q ss_pred             CeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccC--------CCcee---eeeeecCCCCCCCceEEEEec
Q 024245          161 PKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSK--------GRGMC---MAVQAYLPSKSQGFVNVLAGY  228 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~--------~~~~~---~~~~~~~p~~~~g~~~l~~~~  228 (270)
                      ++++  +-. --+|++||+. ..+++.+++        -|..-        ....+   ..++ |+.+   +. +++||+
T Consensus       285 ryil--sRD-yltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~---~~-~v~TGs  348 (433)
T KOG1354|consen  285 RYIL--SRD-YLTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGN---DS-YVMTGS  348 (433)
T ss_pred             cEEE--Eec-cceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCC---cc-eEeccc
Confidence            8876  343 3799999994 556666665        23211        01111   2344 7764   33 999999


Q ss_pred             CCCcEEEEEcCC
Q 024245          229 EDGSILVWDIRN  240 (270)
Q Consensus       229 ~dg~i~vwd~~~  240 (270)
                      ....++++++..
T Consensus       349 y~n~frvf~~~~  360 (433)
T KOG1354|consen  349 YNNVFRVFNLAR  360 (433)
T ss_pred             ccceEEEecCCC
Confidence            999999999654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.93  E-value=5.5e-07  Score=78.93  Aligned_cols=225  Identities=10%  Similarity=0.074  Sum_probs=122.1

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEE----eCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..... +.....-.  .+|.+++|||  |++.|+..+.++++.+-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence            34689999999999989999999999999    544332 21222122  5699999999  999999888888887764


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCce----EEEeccCceeeeccC--CCCC-eEecCCCCeEEE
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD----CYEREVGETVDTDSL--CDSK-DDVPAEGPKYMA  165 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~  165 (270)
                      -.-.-....++..  ........+++-+.....-.-+.....    ..+....+.-...+.  .... ++|..||.++.+
T Consensus       149 ~~fd~i~E~~l~~--~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV  226 (928)
T PF04762_consen  149 RDFDPISEVPLDS--DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV  226 (928)
T ss_pred             ccceEEEEeecCc--cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence            2211100000000  000001112222211110000000000    001000000001111  1111 899999998766


Q ss_pred             Eec--CC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCcEEEEEc
Q 024245          166 VAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWDI  238 (270)
Q Consensus       166 ~~~--~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~i~vwd~  238 (270)
                      .+-  ..  -..++||+.. |.+..+-+            +..+.-.+++ |.|.++    +||+...   ...|.+|.-
T Consensus       227 ss~~~~~~~~R~iRVy~Re-G~L~stSE------------~v~gLe~~l~-WrPsG~----lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  227 SSVEPETGSRRVIRVYSRE-GELQSTSE------------PVDGLEGALS-WRPSGN----LIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             EEEEcCCCceeEEEEECCC-ceEEeccc------------cCCCccCCcc-CCCCCC----EEEEEEEcCCCcEEEEEec
Confidence            443  22  2689999976 66444433            1344445566 999643    7777754   345777764


Q ss_pred             CCCCcceeeee----ccCCCeeEEEeecCCCcee
Q 024245          239 RNPGIPLTAMK----VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       239 ~~~~~~~~~~~----~~~~~v~~~~~s~~g~~ls  268 (270)
                      +  |-.-..|.    .....|..++|++|+..|.
T Consensus       289 N--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA  320 (928)
T PF04762_consen  289 N--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA  320 (928)
T ss_pred             C--CcEeeeEecCCCCCCceeeEEEECCCCCEEE
Confidence            3  33222222    2356799999999998875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.3e-07  Score=71.91  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             cccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..+.+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+   ..+++++|.-. +.++|..|...|.|
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGMV  260 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCceE
Confidence            4556778889999999999666 8889999999999999999888888877   55999999873 35678899999999


Q ss_pred             EEEEccCCc
Q 024245           89 KCWDIENGG   97 (270)
Q Consensus        89 ~~wd~~~~~   97 (270)
                      .+||++..+
T Consensus       261 lvyD~R~~~  269 (463)
T KOG1645|consen  261 LVYDMRQPE  269 (463)
T ss_pred             EEEEccCCC
Confidence            999998654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.92  E-value=1.8e-08  Score=72.25  Aligned_cols=193  Identities=15%  Similarity=0.127  Sum_probs=104.4

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee------------EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV------------SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      |+.+.++.+. .|+++-.++.+......++.+.            +.+..+...++......    .++.++++..||.+
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~----~~t~V~~~~~dg~~  113 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM----TDNRVCIGYADGSL  113 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc----cCCceEecCCCceE
Confidence            5666666543 5667766766666655443332            23333332233333222    34789999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC--------CceEEEeccCceeeec---cCCCCCeEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--------PKDCYEREVGETVDTD---SLCDSKDDVP  157 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~s  157 (270)
                      .+++.+......   ..++............  .....+..+.        ....|+++..+.....   +.+-..++-+
T Consensus       114 ~v~s~~~~~~~~---~~i~~~~~~~as~~~~--~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h  188 (319)
T KOG4714|consen  114 AVFSTDKDLALM---SRIPSIHSGSASRKIC--RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH  188 (319)
T ss_pred             EEEechHHHhhh---hhccccccccccccee--ecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence            999987632211   1111111000000000  0011111111        1112222222221111   1111116777


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCccee-eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      |..+.+++ +|+.||.+.+||.+..... ..+.        .|    +..++.+. |+|.  ++. .|+++++||.+-.|
T Consensus       189 p~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~--------ah----k~~i~eV~-FHpk--~p~-~Lft~sedGslw~w  251 (319)
T KOG4714|consen  189 PAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLK--------AH----KAEIWEVH-FHPK--NPE-HLFTCSEDGSLWHW  251 (319)
T ss_pred             cccccEEE-EecCCCeEEEEEcccccchHHHHH--------Hh----hhhhhhee-ccCC--Cch-heeEecCCCcEEEE
Confidence            88887776 7889999999999977533 3333        55    44677777 9997  455 89999999999999


Q ss_pred             EcCC
Q 024245          237 DIRN  240 (270)
Q Consensus       237 d~~~  240 (270)
                      |..+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.90  E-value=1.5e-07  Score=70.21  Aligned_cols=229  Identities=12%  Similarity=0.160  Sum_probs=130.0

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      .|.+++.++||.+.|++...-|..+-+++.+.|.+++||--. +++.-..+. |..+.++.++++.+  +...|+.|-..
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~n   89 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDN   89 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEec
Confidence            357889999999999999999977789999999999999643 343333332 33337799999999  87889999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEe-ccCceeeeccCCCCC-eEec--CCCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER-EVGETVDTDSLCDSK-DDVP--AEGP  161 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~s--~~~~  161 (270)
                      |++.-+.+...-...........+.......-....+.-...........|.. +.+..+     ++.. .+..  ++-.
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l-----g~Y~~~~~~t~~~~d  164 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL-----GGYNFETPASALQFD  164 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc-----cceEeeccCCCCcee
Confidence            99988876432111111111111211111111111111111111111111111 111111     0000 0000  1101


Q ss_pred             eEEEEecCCCceEEEEeCC--CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          162 KYMAVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      ...+..|...|.|.+-.+.  .-.++.++.        +|    .+.+.++. |.|.  ++  .|.+|..|..+.+||+.
T Consensus       165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~--~~--~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  165 ALYAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPG--QR--LLFSGASDHSVIMWDIG  227 (404)
T ss_pred             eEEEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCC--Cc--EEEeccccCceEEEecc
Confidence            1122345555655554433  234566666        56    44677787 9985  22  89999999999999998


Q ss_pred             CCCcceeeeeccCCCeeEEEe
Q 024245          240 NPGIPLTAMKVHLEPGLECSM  260 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~  260 (270)
                      -.......+.+|...|..+..
T Consensus       228 g~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  228 GRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             CCcceeeeeccchhhhhhhhh
Confidence            655566677788776665443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=4.5e-09  Score=79.48  Aligned_cols=84  Identities=18%  Similarity=0.284  Sum_probs=72.0

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+-||-..++.++|+||+++++++.+|..|+|-....-..+..+. +|.  .-|..++..+  + ..|+++|.|++|++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~--eFVS~isl~~--~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHK--EFVSTISLTD--N-YLLLSGSGDKTLRL  219 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccH--hheeeeeecc--C-ceeeecCCCCcEEE
Confidence            3456899999999999999999999999999998887655555554 577  6699999988  5 67899999999999


Q ss_pred             EEccCCccCC
Q 024245           91 WDIENGGLSS  100 (270)
Q Consensus        91 wd~~~~~~~~  100 (270)
                      ||+.+++...
T Consensus       220 Wd~~sgk~L~  229 (390)
T KOG3914|consen  220 WDITSGKLLD  229 (390)
T ss_pred             EecccCCccc
Confidence            9999998754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=8.4e-09  Score=76.80  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      -++.|.++.|...+.++..|.+.|.|...|++.+     .+.+.+ .|.  ..|+++..-.+ ++++|++.+.+|+|++|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~--Ssvtslq~Lq~-s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD--SSVTSLQILQF-SQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC--cchhhhhhhcc-ccceEeeccCcCceeEe
Confidence            4567888999988899999999999999999764     344444 455  66888887664 45899999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      |++--++.. .+.+.++|......+.                                    +-+.+... +++ ++++|
T Consensus       327 D~R~~K~~~-~V~qYeGHvN~~a~l~------------------------------------~~v~~eeg-~I~-s~GdD  367 (425)
T KOG2695|consen  327 DLRATKCKK-SVMQYEGHVNLSAYLP------------------------------------AHVKEEEG-SIF-SVGDD  367 (425)
T ss_pred             eehhhhccc-ceeeeecccccccccc------------------------------------cccccccc-eEE-EccCe
Confidence            998765422 1112222211110000                                    11333333 344 46679


Q ss_pred             ceEEEEeCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~  190 (270)
                      -..|||.++++.++.+++.
T Consensus       368 cytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eEEEEEecccCceeeccCC
Confidence            9999999999999988874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=6.3e-07  Score=72.53  Aligned_cols=166  Identities=13%  Similarity=0.034  Sum_probs=88.7

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE--E-EEEeCCC--cEEEEEccCCccCCCCccceecccceEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~  114 (270)
                      ..|.+.|...+.... +....  ..+..-.|+|  ||+.  + ++...++  .|.+.++.+++...  +..+++....  
T Consensus       165 ~~l~~~d~dG~~~~~-lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~--  235 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM--  235 (428)
T ss_pred             ceEEEEcCCCCCceE-cccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence            467778876554443 43333  4467889999  9875  2 2444444  46666777664322  1111111100  


Q ss_pred             EEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec---CCCceEEEEeCCCcc--eeeeec
Q 024245          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH  189 (270)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~--~~~~~~  189 (270)
                                                             .+|||||+.+++++.   ..+-.+.+|++..+.  ....+.
T Consensus       236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt  276 (428)
T PRK01029        236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL  276 (428)
T ss_pred             ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence                                                   359999998876442   123334457766531  222222


Q ss_pred             cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE--EcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .       +.    ........ |+|+   |+.++++...+|...+|  ++...+.....+..+...+...+|||||+.|
T Consensus       277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            1       11    11223455 9994   55234444456755555  4442233344455455667889999999876


Q ss_pred             e
Q 024245          268 S  268 (270)
Q Consensus       268 s  268 (270)
                      .
T Consensus       342 a  342 (428)
T PRK01029        342 A  342 (428)
T ss_pred             E
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.84  E-value=5e-06  Score=64.64  Aligned_cols=202  Identities=10%  Similarity=0.015  Sum_probs=110.4

Q ss_pred             EEEEEeCCCCEEEEec-C-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           22 TDVCFHQTKPILFAGT-T-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      ..++++|||++|+... . +..|.+.|+.+++.+..+....   ...-...++  + ..+ .-+.||......+.+....
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~vy~t~e--~-~~~-~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYHIFPTAN--D-TFF-MHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcEEEEecC--C-ccE-EEeecCceEEEEecCCCce
Confidence            4789999999888766 3 6899999999999988877532   122222222  2 222 3334554444333221110


Q ss_pred             C-CCccceec--ccceEE-EEeeccCCccceecCCCCceEEEeccC-----ceeee----------ccCCCCCeEecCCC
Q 024245          100 S-NPSLTIKT--NSYHFC-KLSLVKEPYANAKQANEPKDCYEREVG-----ETVDT----------DSLCDSKDDVPAEG  160 (270)
Q Consensus       100 ~-~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~s~~~  160 (270)
                      . .....+..  ...... .+.. ...........+.+...|+...     .....          ...+-+.+++++++
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~-~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg  259 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSN-KSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR  259 (352)
T ss_pred             EEeeeeeecCCccccccCCceEc-CCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence            0 00000000  000000 0000 0111111222233344443221     11111          11111128999999


Q ss_pred             CeEEEEecCC--------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCC
Q 024245          161 PKYMAVAGEQ--------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDG  231 (270)
Q Consensus       161 ~~~~~~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg  231 (270)
                      ++++++.-..        .+.|.++|..+++.+..+..       +      ..++.++ ++|+   ++ .++++...++
T Consensus       260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G------~~~~~ia-vS~D---gkp~lyvtn~~s~  322 (352)
T TIGR02658       260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------G------HEIDSIN-VSQD---AKPLLYALSTGDK  322 (352)
T ss_pred             CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------C------CceeeEE-ECCC---CCeEEEEeCCCCC
Confidence            9988743211        25899999999999999884       2      3577787 9994   55 3555555789


Q ss_pred             cEEEEEcCCCCcceeeee
Q 024245          232 SILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~  249 (270)
                      .|.++|..+ ++.+..+.
T Consensus       323 ~VsViD~~t-~k~i~~i~  339 (352)
T TIGR02658       323 TLYIFDAET-GKELSSVN  339 (352)
T ss_pred             cEEEEECcC-CeEEeeec
Confidence            999999999 77777773

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=1.2e-08  Score=83.19  Aligned_cols=194  Identities=18%  Similarity=0.235  Sum_probs=119.1

Q ss_pred             CCcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ......+.||..+|+.+-|+|. ...+++++.|-.+..||+++. .++..+....  ..-..++|+-. +++.++ .+..
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~p~vla-sshg  179 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-DPNVLA-SSHG  179 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-Ccchhh-hccC
Confidence            3455668899999999999994 458999999999999999874 4454444433  44678999873 434444 4556


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  165 (270)
                      +.|++||.+.+.   .|+..++++......                                      ++|..--...+.
T Consensus       180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~--------------------------------------~~fnr~~~s~~~  218 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS---TPLCSLKGHVSSVNS--------------------------------------IDFNRFKYSEIM  218 (1081)
T ss_pred             CceEEEeccCCC---cceEEecccceeeeh--------------------------------------HHHhhhhhhhhc
Confidence            679999999886   444555553222211                                      112211112233


Q ss_pred             EecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce--------EEEEecCCCcEEE
Q 024245          166 VAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV--------NVLAGYEDGSILV  235 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~--------~l~~~~~dg~i~v  235 (270)
                       +++.|++|+.||.....  ..++..             ....++.-. |-|-+ +|..        .+.----+.....
T Consensus       219 -s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  219 -SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFG-EGYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             -ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccC-ceeEeccccCCeeeeeccccchhhh
Confidence             56779999999987543  222222             222344443 55543 2321        1111112333445


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      |++.+..+++.+|.||.+.|...-|-.
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~  309 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRK  309 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhh
Confidence            677776789999999998887665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.1e-05  Score=60.91  Aligned_cols=222  Identities=11%  Similarity=0.113  Sum_probs=117.7

Q ss_pred             EEEEEeCCCCEEEEecC-CCcEEEEeCCC-CceeEE--EeecCCC--------cceEEEEEeeCCCCCEEEEEeC-CCcE
Q 024245           22 TDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRTVSS--SWVHSAA--------HGIVSVATGPSIGLNKVISQGR-DGTV   88 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~--~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~-d~~i   88 (270)
                      +-++++++|++|+++.. .|.|.++-++. |.....  +..|...        .-+....+.|  ++++|++... -..|
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP--~~~~l~v~DLG~Dri  169 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP--DGRYLVVPDLGTDRI  169 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC--CCCEEEEeecCCceE
Confidence            77888999999988876 47899998865 432221  1112210        1178899999  9888887653 3479


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccC--c--------eeeeccCCCCC---
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVG--E--------TVDTDSLCDSK---  153 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~--------~~~~~~~~~~~---  153 (270)
                      .+|++..+++.......++.. .....+.+..+....++  --.+.+..|.....  +        .+...+.+...   
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            999999887644222222111 11122222222222222  22334444544442  1        12223334433   


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG  231 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg  231 (270)
                      +.+++||++|.++-- ....|.+|.+.... .+..+..        . ........... |+|+   |+ +|+++. .+.
T Consensus       249 Ihis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~--------~-~teg~~PR~F~-i~~~---g~-~Liaa~q~sd  313 (346)
T COG2706         249 IHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGI--------T-PTEGQFPRDFN-INPS---GR-FLIAANQKSD  313 (346)
T ss_pred             EEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEE--------e-ccCCcCCccce-eCCC---CC-EEEEEccCCC
Confidence            899999998886433 34588888776432 2222221        0 10111233444 7774   55 555555 445


Q ss_pred             cEEEEEcCCCCcceeeee--ccCCCeeEEEee
Q 024245          232 SILVWDIRNPGIPLTAMK--VHLEPGLECSMW  261 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~s  261 (270)
                      .|.+|......-.+..+.  .......||.|.
T Consensus       314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            688887764222233222  223445666664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=1.9e-06  Score=67.36  Aligned_cols=171  Identities=12%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             EeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-cEEEEEccCCccCCCCc
Q 024245           26 FHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-TVKCWDIENGGLSSNPS  103 (270)
Q Consensus        26 ~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~  103 (270)
                      |++ +|.+++..|+ |...|.+...+-.++.  ++.  ..|.-..+.-  +++-++.|..|| .+-++|.++++..+   
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~--~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~kr---  396 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKK--GGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEVKR---  396 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCC--CceEEEEEcc--CCcceEEeccCCceEEEEecCCceEEE---
Confidence            455 7888888886 5677777665555533  344  4588888877  777888999998 89999999886432   


Q ss_pred             cceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcc
Q 024245          104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (270)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~  183 (270)
                        +...-....  +                                    +..+++|+.+++  +.....|-+.|+.+++
T Consensus       397 --~e~~lg~I~--a------------------------------------v~vs~dGK~~vv--aNdr~el~vididngn  434 (668)
T COG4946         397 --IEKDLGNIE--A------------------------------------VKVSPDGKKVVV--ANDRFELWVIDIDNGN  434 (668)
T ss_pred             --eeCCccceE--E------------------------------------EEEcCCCcEEEE--EcCceEEEEEEecCCC
Confidence              111111111  1                                    458899987764  4556888899999887


Q ss_pred             eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcceeeeeccCCCeeEEE
Q 024245          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPGLECS  259 (270)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~  259 (270)
                      ....-+            ...+.++... |+|+   ++ ++|-+--+|    .|+++|+.. ++....-. ..+.=.+-+
T Consensus       435 v~~idk------------S~~~lItdf~-~~~n---sr-~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT-~ta~DfsPa  495 (668)
T COG4946         435 VRLIDK------------SEYGLITDFD-WHPN---SR-WIAYAFPEGYYTQSIKLYDMDG-GKIYDVTT-PTAYDFSPA  495 (668)
T ss_pred             eeEecc------------cccceeEEEE-EcCC---ce-eEEEecCcceeeeeEEEEecCC-CeEEEecC-CcccccCcc
Confidence            543222            1467888888 9994   55 888877665    689999997 55433322 233335567


Q ss_pred             eecCCCce
Q 024245          260 MWRNPITM  267 (270)
Q Consensus       260 ~s~~g~~l  267 (270)
                      |.|||++|
T Consensus       496 FD~d~ryL  503 (668)
T COG4946         496 FDPDGRYL  503 (668)
T ss_pred             cCCCCcEE
Confidence            88998875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.79  E-value=1.1e-06  Score=68.95  Aligned_cols=218  Identities=12%  Similarity=0.066  Sum_probs=128.2

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC----------
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----------   86 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~----------   86 (270)
                      -.-++..++|||.|.+|++....| |.+|.-.....+..+..    ..|..+.|+|  ++++|.+=+...          
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~----~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH----PDVKYLDFSP--NEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeeec----CCceecccCc--ccceeeeeccCCccChhhccCC
Confidence            456789999999999999988776 99999887765555543    3399999999  999999755433          


Q ss_pred             -----cEEEEEccCCccCCCCccceecccce-----EEEEeeccCCccceecCCCCceEEEeccCceee---eccC--CC
Q 024245           87 -----TVKCWDIENGGLSSNPSLTIKTNSYH-----FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSL--CD  151 (270)
Q Consensus        87 -----~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~  151 (270)
                           .+.+||+.++.++.    .+......     ...++..  .....-..+....++++ +.....   ..+.  +-
T Consensus       104 ~~~~n~~~vwd~~sg~iv~----sf~~~~q~~~~Wp~~k~s~~--D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVF----SFNGISQPYLGWPVLKFSID--DKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             ccccCceeEEeccCceeEe----eccccCCcccccceeeeeec--chhhhhhccCeEEEEec-CCccccCchhhccccce
Confidence                 59999999997643    33322222     2222222  22222224555555664 222111   1111  11


Q ss_pred             CCeEecCCCCeE--EEE---ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          152 SKDDVPAEGPKY--MAV---AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       152 ~~~~~s~~~~~~--~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      ....|+|.++.-  ...   ....+++++||.+..+..+.+-..            ....-..+. |.+.   |.++++-
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~~ll~l  240 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GKYLLVL  240 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---CceEEEE
Confidence            116677764321  111   134578999999987665544331            111223344 7764   3322221


Q ss_pred             ec----------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          227 GY----------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       227 ~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      .-          ....++|++++.  ..+.....-.++|.+.+|.|.+..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~  288 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSR  288 (561)
T ss_pred             EEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCc
Confidence            11          134688888884  323333355789999999998765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=1.2e-06  Score=72.43  Aligned_cols=214  Identities=10%  Similarity=0.109  Sum_probs=130.9

Q ss_pred             CCcccccccccccEEEEEEeCC------------CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQT------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (270)
                      .+.++.+..|...|+.+.|.|.            .-+||++...|.|.+||...+..+..+..+.  +++..++|-+..+
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence            3678889999999999999873            1268888899999999999888887787777  7799999988543


Q ss_pred             C--CEEEEEeCCCcEEEEEccCCccCC------CCccceecccceEEEEeeccCCcccee-------cCCCCceEEEecc
Q 024245           76 L--NKVISQGRDGTVKCWDIENGGLSS------NPSLTIKTNSYHFCKLSLVKEPYANAK-------QANEPKDCYEREV  140 (270)
Q Consensus        76 ~--~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  140 (270)
                      .  ..|+.-....++.+|+..+|+...      .++..+...+.....+.+.........       -.......+.+.+
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence            2  456777778899999999987643      111112211111111111111110000       0011111222221


Q ss_pred             Ccee-----e------eccCCCCC---------eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245          141 GETV-----D------TDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (270)
Q Consensus       141 ~~~~-----~------~~~~~~~~---------~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~  200 (270)
                      ...-     +      ........         .+|+|.-++.++++-  ...+.|+|++-..++.....          
T Consensus       203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpi----------  270 (1062)
T KOG1912|consen  203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPI----------  270 (1062)
T ss_pred             CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEe----------
Confidence            1000     0      00000001         678888777776553  57899999998888877763          


Q ss_pred             cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                        .++.+--+. +-|+.. .. .|++.-.||.+.+|-.+.
T Consensus       271 --er~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  271 --ERGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             --ccCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence              122233344 777633 22 899999999999997654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.75  E-value=1.8e-06  Score=62.54  Aligned_cols=177  Identities=10%  Similarity=-0.008  Sum_probs=102.1

Q ss_pred             EEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (270)
Q Consensus        33 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  112 (270)
                      +..++.|.++++.+++.+.....+....  -.+.++++++  ++.++++.+....|..|.+........-+...+.....
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g  206 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG  206 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccc--cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence            4556677777777776544333322222  2378999999  99999999999999999887543211000000111111


Q ss_pred             EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (270)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  192 (270)
                      ++                                       ..|+..... + +++..||++.|||++..........  
T Consensus       207 F~---------------------------------------~S~s~~~~~-F-Av~~Qdg~~~I~DVR~~~tpm~~~s--  243 (344)
T KOG4532|consen  207 FY---------------------------------------NSFSENDLQ-F-AVVFQDGTCAIYDVRNMATPMAEIS--  243 (344)
T ss_pred             ee---------------------------------------eeeccCcce-E-EEEecCCcEEEEEecccccchhhhc--
Confidence            11                                       335555543 3 3677899999999997653332221  


Q ss_pred             CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-------ccC-CCeeEEEeecCC
Q 024245          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-------VHL-EPGLECSMWRNP  264 (270)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~-~~v~~~~~s~~g  264 (270)
                       ...+.    ..+.+..+. |+|.+...  +|+..-.-+.+.+.|+++ ....+.+.       .|. ..|..-.|+.++
T Consensus       244 -strp~----hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  244 -STRPH----HNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             -ccCCC----CCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCCC
Confidence             01112    355666666 99865433  555555567899999998 44333322       122 236666676654


Q ss_pred             C
Q 024245          265 I  265 (270)
Q Consensus       265 ~  265 (270)
                      .
T Consensus       315 ~  315 (344)
T KOG4532|consen  315 E  315 (344)
T ss_pred             c
Confidence            3

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=1e-05  Score=65.32  Aligned_cols=197  Identities=6%  Similarity=-0.081  Sum_probs=102.3

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE-EEEEeC---CCcEEEEEccCCccCCCCccceecccceEEE
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  115 (270)
                      ..|.+-|..... .+.+...   ..+....|+|  +|+. ++..+.   +..|.++|+.+++...  +...++. .....
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~---~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~-~~~~~  239 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG---GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGM-LVVSD  239 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC---CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCc-EEeeE
Confidence            456665554333 3333322   2478899999  9885 553333   3468888998876432  2221111 11122


Q ss_pred             EeeccCCccceecCCCCceEE--EeccCceeeec-cCCCCC-eEecCCCCeEEEEecCCC-ceEEEEeCCCcceeeeecc
Q 024245          116 LSLVKEPYANAKQANEPKDCY--EREVGETVDTD-SLCDSK-DDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~s~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~  190 (270)
                      +++++..........+...+|  ++..++....+ ..+... ..|+|||+.+++++...+ ..|.+.|+.+++..+....
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence            333332222222223333444  44444432221 122122 789999998887653322 2688888887665332221


Q ss_pred             CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--------CcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                             +.    .    ... |+|+   |+.++++...+        ..|.+.|+.+ +.. ..+... .......|+|
T Consensus       320 -------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~~-~~LT~~-~~~~~p~~SP  377 (419)
T PRK04043        320 -------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DYI-RRLTAN-GVNQFPRFSS  377 (419)
T ss_pred             -------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CCe-EECCCC-CCcCCeEECC
Confidence                   11    1    124 9994   55344444332        3688888877 443 334332 2334688999


Q ss_pred             CCCce
Q 024245          263 NPITM  267 (270)
Q Consensus       263 ~g~~l  267 (270)
                      ||+.|
T Consensus       378 DG~~I  382 (419)
T PRK04043        378 DGGSI  382 (419)
T ss_pred             CCCEE
Confidence            99875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.68  E-value=2.7e-05  Score=57.22  Aligned_cols=74  Identities=8%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec-----CCCcceEEEEEeeCC-C---CCEEEEEeCCCcEEEE
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSI-G---LNKVISQGRDGTVKCW   91 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~---~~~l~s~~~d~~i~~w   91 (270)
                      =+.++||||+.+||.+...|+|+++|+... .+..+...     .-...|..+.|.+.. +   ...|+....+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            367999999999999999999999998753 33233211     111457777776521 1   1246667778888877


Q ss_pred             EccC
Q 024245           92 DIEN   95 (270)
Q Consensus        92 d~~~   95 (270)
                      -+..
T Consensus       125 ~vs~  128 (282)
T PF15492_consen  125 LVSV  128 (282)
T ss_pred             EEEc
Confidence            7643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=3.1e-07  Score=75.36  Aligned_cols=225  Identities=11%  Similarity=0.131  Sum_probs=134.2

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .+.+.++..+|.|+-+|.+++-| +.+-|+...-....+-.|..+-.|-.+.|+|.....+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788899999999999999988 67778765322222222332234777888874333344433334445689886432


Q ss_pred             cCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCC-CCC---eEecCCCCeEEEEecCCC
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLC-DSK---DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~s~~~~~~~~~~~~~d  171 (270)
                      .. ..-+.++++......+.+.......  ..........|+++........... +..   ++|+--...+++  .+..
T Consensus       103 ~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg  179 (1081)
T KOG0309|consen  103 SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHG  179 (1081)
T ss_pred             cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccC
Confidence            21 1223455555544444444333222  2333556777888877655443322 222   889977777775  3345


Q ss_pred             ceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          172 SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       172 ~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      ..|++||.+.|. ++..++        +|.    ..+..+. |.... .+  .+.+.+.||+|++||.....+.-.....
T Consensus       180 ~~i~vwd~r~gs~pl~s~K--------~~v----s~vn~~~-fnr~~-~s--~~~s~~~d~tvkfw~y~kSt~e~~~~vt  243 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPLCSLK--------GHV----SSVNSID-FNRFK-YS--EIMSSSNDGTVKFWDYSKSTTESKRTVT  243 (1081)
T ss_pred             CceEEEeccCCCcceEEec--------ccc----eeeehHH-Hhhhh-hh--hhcccCCCCceeeecccccccccceecc
Confidence            789999999775 677777        553    3455555 65431 12  7999999999999998763332222222


Q ss_pred             cCCCeeEEEeec
Q 024245          251 HLEPGLECSMWR  262 (270)
Q Consensus       251 ~~~~v~~~~~s~  262 (270)
                      ...+|+--++-|
T Consensus       244 t~~piw~~r~~P  255 (1081)
T KOG0309|consen  244 TNFPIWRGRYLP  255 (1081)
T ss_pred             ccCcceeccccc
Confidence            345566555555

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=9.5e-06  Score=72.66  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=104.0

Q ss_pred             EEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecC-------------CCcceEEEEEeeCCCCCE-EEEEeCC
Q 024245           21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-------------AAHGIVSVATGPSIGLNK-VISQGRD   85 (270)
Q Consensus        21 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~-l~s~~~d   85 (270)
                      -+.++|+| ++.++++.+.++.|++||..++... .+.+..             .-.....|+++|  +++. +++-+.+
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n  761 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSES  761 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCC
Confidence            35789999 5667777778899999998876433 222110             002356799999  8774 4566678


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  165 (270)
                      +.|++||+.++....    ...+......       .....   +..       .+......+.....++++++|. +++
T Consensus       762 ~~Irv~D~~tg~~~~----~~gg~~~~~~-------~l~~f---G~~-------dG~g~~~~l~~P~Gvavd~dG~-LYV  819 (1057)
T PLN02919        762 SSIRALDLKTGGSRL----LAGGDPTFSD-------NLFKF---GDH-------DGVGSEVLLQHPLGVLCAKDGQ-IYV  819 (1057)
T ss_pred             CeEEEEECCCCcEEE----EEecccccCc-------ccccc---cCC-------CCchhhhhccCCceeeEeCCCc-EEE
Confidence            999999998764210    0000000000       00000   000       0000000111112278999997 444


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                       +...++.|++||..++...........+...|. ..........++ ++|   +|+ ++++-+.++.|++||+.+
T Consensus       820 -ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa-vd~---dG~-lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        820 -ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA-LGE---NGR-LFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             -EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE-EeC---CCC-EEEEECCCCEEEEEECCC
Confidence             445689999999987765533321000000000 000112344565 777   466 788888999999999988

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.66  E-value=1.8e-05  Score=59.62  Aligned_cols=169  Identities=14%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEe-----cCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .-+.|.||      -.||+||++|++.     ...|.|-|||.. +.+.+.++..+.  -.-..+.+.|  +|..|+.+.
T Consensus        48 ~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--IGPHel~l~p--DG~tLvVAN  117 (305)
T PF07433_consen   48 PGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--IGPHELLLMP--DGETLVVAN  117 (305)
T ss_pred             CCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--cChhhEEEcC--CCCEEEEEc
Confidence            44567777      6899999999885     345899999998 667888888776  4467888999  987777652


Q ss_pred             C------------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC------CCCceEEEec
Q 024245           84 R------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA------NEPKDCYERE  139 (270)
Q Consensus        84 ~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  139 (270)
                      .                  +-++.+-|..+++++.+..+....+......+.+...........      ...-.+.-.+
T Consensus       118 GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~  197 (305)
T PF07433_consen  118 GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR  197 (305)
T ss_pred             CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc
Confidence            2                  224555566666654422221122333344444433322111110      0000111111


Q ss_pred             cCceee---------eccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          140 VGETVD---------TDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       140 ~~~~~~---------~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .++.+.         ..+.+... +++++++..+.+ ++-..+.+.+||..+++.+....
T Consensus       198 ~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  198 RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-TSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE-ECCCCCEEEEEECCCCCEeeccc
Confidence            111111         11112222 899999976554 67778999999999999888776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=6.9e-05  Score=56.25  Aligned_cols=216  Identities=12%  Similarity=0.135  Sum_probs=120.8

Q ss_pred             EEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEe-eCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        22 ~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      .+..|.+ ++.++++--..+.|..|+..+++.. .+...   . ...+.+. +  + ..|+.+...+ +.++|+.+++..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~--~-g~l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRP--D-GRLYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECT--T-SEEEEEETTC-EEEEETTTTEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEcc--C-CEEEEEEcCc-eEEEecCCCcEE
Confidence            3678898 7778888778899999999876543 23322   2 6778888 4  5 5555555554 566698887653


Q ss_pred             CCCccceecc---cceEEEEeeccCCccceecCCC-----C--ceEEEeccCceeee---ccCCCCCeEecCCCCeEEEE
Q 024245          100 SNPSLTIKTN---SYHFCKLSLVKEPYANAKQANE-----P--KDCYEREVGETVDT---DSLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus       100 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~  166 (270)
                      .  +......   ......+.+.............     .  ..+|.+.....+..   .+.....++|+|+++.+++ 
T Consensus        74 ~--~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv-  150 (246)
T PF08450_consen   74 V--LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYV-  150 (246)
T ss_dssp             E--EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEE-
T ss_pred             E--EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheee-
Confidence            2  3333211   1222223333222211111111     0  23444444422222   2222222999999998776 


Q ss_pred             ecCCCceEEEEeCCCcce-e---eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          167 AGEQLSEVEIWDLNTAER-C---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      +-+..+.|..|++..... +   ..+..        . ....+..-.++ +..   +|. +.++....+.|.++|.+  +
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~--------~-~~~~g~pDG~~-vD~---~G~-l~va~~~~~~I~~~~p~--G  214 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFID--------F-PGGPGYPDGLA-VDS---DGN-LWVADWGGGRIVVFDPD--G  214 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEE-EBT---TS--EEEEEETTTEEEEEETT--S
T ss_pred             cccccceeEEEeccccccceeeeeeEEE--------c-CCCCcCCCcce-EcC---CCC-EEEEEcCCCEEEEECCC--c
Confidence            445578899999863221 1   12210        0 00112344454 665   565 66666678899999977  7


Q ss_pred             cceeeeeccCCCeeEEEee-cCCC
Q 024245          243 IPLTAMKVHLEPGLECSMW-RNPI  265 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s-~~g~  265 (270)
                      +.+..+......+++++|. ++..
T Consensus       215 ~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  215 KLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             cEEEEEcCCCCCEEEEEEECCCCC
Confidence            7777777665689999995 4443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=5.7e-05  Score=67.89  Aligned_cols=235  Identities=9%  Similarity=-0.045  Sum_probs=122.3

Q ss_pred             EEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCC------------CcceEEEEEeeCCCCCEEEEE-eCCCc
Q 024245           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQ-GRDGT   87 (270)
Q Consensus        22 ~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~-~~d~~   87 (270)
                      ..+++++ ++.++++-+..+.|++||.. +..+..+.....            -.....+++.+  +++.|+.+ ...+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence            4688887 46677777788899999976 444433322110            01257899998  77766554 45678


Q ss_pred             EEEEEccCCccCCCC---c--cceeccc-------ceEEEEeeccCCccceecC--CCCceEEEeccCceeee-------
Q 024245           88 VKCWDIENGGLSSNP---S--LTIKTNS-------YHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDT-------  146 (270)
Q Consensus        88 i~~wd~~~~~~~~~~---~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------  146 (270)
                      |+++|+.++......   .  ....+..       .....+.+.......+...  ...+..++...+.....       
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            999998765431100   0  0000000       0001122221111122222  22233344433322110       


Q ss_pred             ----------ccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccC-cCCC---CCC-ccc----CCCcee
Q 024245          147 ----------DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN-SCGG---SPN-FSS----KGRGMC  207 (270)
Q Consensus       147 ----------~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~~~-h~~----~~~~~~  207 (270)
                                .+.....++++|++..++++ ...++.|++||+.++......... ....   ..+ ...    ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                      01111118999999877764 455799999999876532111000 0000   000 000    001123


Q ss_pred             eeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec--------------cCCCeeEEEeecCCCce
Q 024245          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--------------HLEPGLECSMWRNPITM  267 (270)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~s~~g~~l  267 (270)
                      ..++ ++|   +|. ++++-..++.|++||..+ +... .+.+              .-..+..|+++++|+++
T Consensus       807 ~Gva-vd~---dG~-LYVADs~N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        807 LGVL-CAK---DGQ-IYVADSYNHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             ceee-EeC---CCc-EEEEECCCCEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence            3555 776   455 788888899999999986 4432 2222              11357889999999753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.53  E-value=1.7e-05  Score=62.26  Aligned_cols=78  Identities=22%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCC-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|..+++..+ +...-  +.|.++..++  +|++++.+.....|.+.|+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence            5778898888888888899999999 89999998776554 44344  5699999999  99999999988899999999


Q ss_pred             CCcc
Q 024245           95 NGGL   98 (270)
Q Consensus        95 ~~~~   98 (270)
                      ++..
T Consensus       432 ngnv  435 (668)
T COG4946         432 NGNV  435 (668)
T ss_pred             CCCe
Confidence            9864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.52  E-value=3.9e-05  Score=66.78  Aligned_cols=225  Identities=11%  Similarity=0.048  Sum_probs=117.3

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      +.|.++.|.-++..++.+..+|.|.+-|.++....- ...-.  .+|.+++|+|  |++.++-.+.++++.+-...-.-.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVD--NGISAASWSP--DEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeecc--CceEEEeecC--CCcEEEEEeCCcEEEEEeccccch
Confidence            589999999999988889999999999887654332 21122  6699999999  999998888887776543321111


Q ss_pred             CCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeee--ccCCCCC-eEecCCCCeEEEE--ecCCC-
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAV--AGEQL-  171 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~s~~~~~~~~~--~~~~d-  171 (270)
                      ...++. ..... ......+-+..... +-...+.....+....+....  ....|.. ++|.-||+++.+.  +...+ 
T Consensus       144 ~E~~L~-~d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  144 AEKPLD-ADDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             hccccc-ccccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            111110 00000 00000111100000 000000000000000000000  1222333 8999999866541  11223 


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cCCCcEEEEEcCCC--Cccee
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GIPLT  246 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~dg~i~vwd~~~~--~~~~~  246 (270)
                      ..|+|||.. |.+-..-.            +..+.-.++. |-|.++    .+++-   .+|+.|.++.-+.-  +....
T Consensus       222 RkirV~drE-g~Lns~se------------~~~~l~~~Ls-WkPsgs----~iA~iq~~~sd~~IvffErNGL~hg~f~l  283 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSE------------PVEGLQHSLS-WKPSGS----LIAAIQCKTSDSDIVFFERNGLRHGEFVL  283 (1265)
T ss_pred             eeEEEeccc-chhhcccC------------ccccccccee-ecCCCC----eEeeeeecCCCCcEEEEecCCcccccccc
Confidence            789999987 44322211            1233344555 999643    66665   35667989875421  11222


Q ss_pred             eeeccCCCeeEEEeecCCCcee
Q 024245          247 AMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+......|..++|+.++..|+
T Consensus       284 ~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  284 PFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             CCcccccchheeeecCCCCcee
Confidence            2222233489999999988775

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=3.5e-07  Score=65.84  Aligned_cols=74  Identities=26%  Similarity=0.458  Sum_probs=62.2

Q ss_pred             ccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           19 ASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        19 ~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      ..|.+++-+| ...++++|+.||.+.+||.++.. +...+..|.  .+|..+.|+|. ++..|+++++||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk--~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHK--AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhh--hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence            3499999999 55588899999999999998763 344566787  66999999997 568999999999999999875

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.52  E-value=8.1e-07  Score=71.22  Aligned_cols=75  Identities=16%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ....|.|++++|+.+.|+.|..||+|.+||...+..... + ..  -....++|+|  +|..+++|+..|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~--~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AE--FIPTLIAWHP--DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ec--ccceEEEEcC--CCcEEEEEcCCceEEEEEeecC
Confidence            567899999999999999999999999999876633322 2 22  3378999999  9999999999999999998754


Q ss_pred             c
Q 024245           97 G   97 (270)
Q Consensus        97 ~   97 (270)
                      .
T Consensus       332 p  332 (545)
T PF11768_consen  332 P  332 (545)
T ss_pred             c
Confidence            3

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.50  E-value=4.8e-07  Score=81.02  Aligned_cols=121  Identities=23%  Similarity=0.409  Sum_probs=91.8

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEec---CCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      |+++...+-|.....+..|-.  ..+++++   .++.+.+||.-..   ..+.  ..|.  ++++++++.|  ..+.|++
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~--~gaT~l~~~P--~~qllis 2353 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD--GGATVLAYAP--KHQLLIS 2353 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecC--CCceEEEEcC--cceEEEe
Confidence            588889999999999999976  5677764   4689999996432   3343  6677  6699999999  8889999


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCC
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  161 (270)
                      |+.+|.|++||++..++..    .++.                                               +. ...
T Consensus      2354 ggr~G~v~l~D~rqrql~h----~~~~-----------------------------------------------~~-~~~ 2381 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRH----TFQA-----------------------------------------------LD-TRE 2381 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHH----Hhhh-----------------------------------------------hh-hhh
Confidence            9999999999999876533    2221                                               00 013


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      +++  +|+..|.|+||++..-..++.+..
T Consensus      2382 ~f~--~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2382 YFV--TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             eee--ccCcccceEEEEccccchhhcCch
Confidence            333  688899999999998888888874

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2.6e-05  Score=64.94  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=101.7

Q ss_pred             cccccccEEEEEEeCC-------------CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC---CCCC
Q 024245           14 LRGHRASVTDVCFHQT-------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLN   77 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~   77 (270)
                      |..|.+.|.-..+.-+             |++++|||.||.|.|-.+.+.+....+..+   .++.+++++|.   +..+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhhh
Confidence            4456666666555444             999999999999999999998888877776   66999999992   1146


Q ss_pred             EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec
Q 024245           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  157 (270)
                      .+++|+..| +.++.-+--.... ++ ........+                                        .+++
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk~-~v-~l~~~eG~I----------------------------------------~~i~  167 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNKD-SV-VLSEGEGPI----------------------------------------HSIK  167 (846)
T ss_pred             heeecCcce-EEEehhhhhcCcc-ce-eeecCccce----------------------------------------EEEE
Confidence            799999988 7676432111100 00 111111111                                        1233


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      ..|. ++|- ++ |--|++||+.+++.+..++.+       +... .......+. |.+.   .  .|+.|=.| +|+|.
T Consensus       168 W~g~-lIAW-an-d~Gv~vyd~~~~~~l~~i~~p-------~~~~R~e~fpphl~-W~~~---~--~LVIGW~d-~v~i~  230 (846)
T KOG2066|consen  168 WRGN-LIAW-AN-DDGVKVYDTPTRQRLTNIPPP-------SQSVRPELFPPHLH-WQDE---D--RLVIGWGD-SVKIC  230 (846)
T ss_pred             ecCc-EEEE-ec-CCCcEEEeccccceeeccCCC-------CCCCCcccCCCceE-ecCC---C--eEEEecCC-eEEEE
Confidence            4454 4443 33 445899999999988888753       2111 122333455 8763   2  56666444 78888


Q ss_pred             EcCC
Q 024245          237 DIRN  240 (270)
Q Consensus       237 d~~~  240 (270)
                      .++.
T Consensus       231 ~I~~  234 (846)
T KOG2066|consen  231 SIKK  234 (846)
T ss_pred             EEec
Confidence            8773

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.45  E-value=6e-05  Score=60.44  Aligned_cols=199  Identities=11%  Similarity=0.065  Sum_probs=101.9

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEE--EeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA--TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      ..++.++.++.|..||.++++.+..+.....   ...+.  -+|...+..++.+..++.+..+|.++++...........
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSRVTP---ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEccCCC---ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            3555666677788888877777666544321   11110  011001246777888899999999888654311100000


Q ss_pred             ccceE-----EEEeecc-CCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245          109 NSYHF-----CKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (270)
Q Consensus       109 ~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~  182 (270)
                      .....     ...++.. ..........+....++..+++.+-. ............+.++++  ++.+|.+..+|..++
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~~~~~~~p~~~~~~vyv--~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK-RDASSYQGPAVDDNRLYV--TDADGVVVALDRRSG  299 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe-eccCCccCceEeCCEEEE--ECCCCeEEEEECCCC
Confidence            00000     0000000 00111111233344456655543221 111111122234555654  345899999999999


Q ss_pred             ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                      +.+.+...        ...   ....+.. .     .+. .|++++.+|.|+++|..+ ++.+..++.+...
T Consensus       300 ~~~W~~~~--------~~~---~~~ssp~-i-----~g~-~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~  352 (377)
T TIGR03300       300 SELWKNDE--------LKY---RQLTAPA-V-----VGG-YLVVGDFEGYLHWLSRED-GSFVARLKTDGSG  352 (377)
T ss_pred             cEEEcccc--------ccC---CccccCE-E-----ECC-EEEEEeCCCEEEEEECCC-CCEEEEEEcCCCc
Confidence            87766531        000   0111111 1     122 788899999999999998 8888888765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=4.2e-06  Score=70.45  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=100.5

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---------CCcEEEE
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKCW   91 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------d~~i~~w   91 (270)
                      |+-|+.  +++++.+|...|+|.+-|.++.+.++++..|.  +.|..+..    .|+.|++++.         |..|+||
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs--~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS--GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc--cceeeeec----cCCeEEEeecccccccccccchhhhh
Confidence            444543  57899999999999999999999999999999  55877776    4589998876         4578999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      |++..+.+.  ...++..+..                                         +.|.|.=...++++.+ .
T Consensus       252 DLRmmral~--PI~~~~~P~f-----------------------------------------lrf~Psl~t~~~V~S~-s  287 (1118)
T KOG1275|consen  252 DLRMMRALS--PIQFPYGPQF-----------------------------------------LRFHPSLTTRLAVTSQ-S  287 (1118)
T ss_pred             hhhhhhccC--CcccccCchh-----------------------------------------hhhcccccceEEEEec-c
Confidence            999876543  1222222111                                         2244543333443333 5


Q ss_pred             ceEEEEeCCC-cce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          172 SEVEIWDLNT-AER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       172 ~~i~iwd~~~-~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      |...+-|..+ +++ ...+.        -  .+....+..+. ++++   |+ .++.|..+|.|.+|.-
T Consensus       288 Gq~q~vd~~~lsNP~~~~~~--------v--~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  288 GQFQFVDTATLSNPPAGVKM--------V--NPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cceeeccccccCCCccceeE--------E--ccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecC
Confidence            8888888432 222 22221        1  11233477777 8874   55 9999999999999973

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.41  E-value=0.00014  Score=54.29  Aligned_cols=185  Identities=12%  Similarity=0.101  Sum_probs=100.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC-Ccccee
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN-PSLTIK  107 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~  107 (270)
                      ++..+++++.++.|..||..+|+.+..+.....   +......   .++.++.++.++.+..+|..+++.... .....+
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---ccceeee---cccccccccceeeeEecccCCcceeeeecccccc
Confidence            456777778999999999999999888876332   2221222   336777777888999999999976541 000000


Q ss_pred             cccc-eEEEEeeccCCcccee-cCCCCceEEEeccCceeeeccCCC-C------------CeEecCCCCeEEEEecCCCc
Q 024245          108 TNSY-HFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCD-S------------KDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus       108 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~s~~~~~~~~~~~~~d~  172 (270)
                      .... ......+.  ...... ...+....++..+++.+-...... .            .-.+..++ .+++ +.. ++
T Consensus       109 ~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~-~g  183 (238)
T PF13360_consen  109 PAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYV-SSG-DG  183 (238)
T ss_dssp             TCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEE-ECC-TS
T ss_pred             ccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEE-EcC-CC
Confidence            0110 11111111  111222 224555667777776543321111 1            01111234 5554 333 45


Q ss_pred             e-EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          173 E-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       173 ~-i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      . +.+ |+.+++.+.+...             .. ....  ..+   ++. .|+.++.++.|..||+++ ++.+.
T Consensus       184 ~~~~~-d~~tg~~~w~~~~-------------~~-~~~~--~~~---~~~-~l~~~~~~~~l~~~d~~t-G~~~W  236 (238)
T PF13360_consen  184 RVVAV-DLATGEKLWSKPI-------------SG-IYSL--PSV---DGG-TLYVTSSDGRLYALDLKT-GKVVW  236 (238)
T ss_dssp             SEEEE-ETTTTEEEEEECS-------------S--ECEC--EEC---CCT-EEEEEETTTEEEEEETTT-TEEEE
T ss_pred             eEEEE-ECCCCCEEEEecC-------------CC-ccCC--cee---eCC-EEEEEeCCCEEEEEECCC-CCEEe
Confidence            4 555 9999986643221             11 1111  112   233 666666999999999999 66554

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.40  E-value=1.1e-05  Score=68.13  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=115.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      ++..++-|+-...+..+|+.+.+..+......  ..|.-|..    ++..+.+|...|+|.+-|.++.+.+.    ++..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~ih----t~~a  215 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIH----TFDA  215 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEe----cCcEEEeecccceEEeecCCcCceee----eeec
Confidence            34467777777788999999888887776555  33666665    34889999999999999999875433    6666


Q ss_pred             ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC--------CCceEEEEeCC
Q 024245          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIWDLN  180 (270)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--------~d~~i~iwd~~  180 (270)
                      +......+.+.                                        |+ +++++|-        .|.-|+|||+|
T Consensus       216 Hs~siSDfDv~----------------------------------------GN-lLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  216 HSGSISDFDVQ----------------------------------------GN-LLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             cccceeeeecc----------------------------------------CC-eEEEeecccccccccccchhhhhhhh
Confidence            66555444433                                        22 2222322        36779999999


Q ss_pred             CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE---cCCCCcceeeeeccCCCeeE
Q 024245          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD---IRNPGIPLTAMKVHLEPGLE  257 (270)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~~v~~  257 (270)
                      ..+.+.-+..        +-++     .-+ .|+|.-.  . .++.++..|...+-|   +.++..-+..+......+..
T Consensus       255 mmral~PI~~--------~~~P-----~fl-rf~Psl~--t-~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  255 MMRALSPIQF--------PYGP-----QFL-RFHPSLT--T-RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA  317 (1118)
T ss_pred             hhhccCCccc--------ccCc-----hhh-hhccccc--c-eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence            8887666652        2111     112 3888632  2 788999999999999   44433334444444556999


Q ss_pred             EEeecCCCcee
Q 024245          258 CSMWRNPITMS  268 (270)
Q Consensus       258 ~~~s~~g~~ls  268 (270)
                      +.+|++|..|.
T Consensus       318 fDiSsn~~ala  328 (1118)
T KOG1275|consen  318 FDISSNGDALA  328 (1118)
T ss_pred             EEecCCCceEE
Confidence            99999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=3.6e-06  Score=69.23  Aligned_cols=77  Identities=12%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---------------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ....|++|+.+..++|.|+.||.++|-.+.+..               .-+++.+|.  +.|.-+.|+.  +.+.|-+..
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~--~sV~vvTWNe--~~QKLTtSD   90 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN--ASVMVVTWNE--NNQKLTTSD   90 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc--ceEEEEEecc--ccccccccC
Confidence            456899999998999999999999999886531               123567888  6699999998  778899999


Q ss_pred             CCCcEEEEEccCCccC
Q 024245           84 RDGTVKCWDIENGGLS   99 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~   99 (270)
                      .+|.|.+|-+-.+...
T Consensus        91 t~GlIiVWmlykgsW~  106 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWC  106 (1189)
T ss_pred             CCceEEEEeeecccHH
Confidence            9999999999887653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=4.7e-05  Score=61.45  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      .+++|+.+.+++  |..||+|.+||...+..... +             ..-....++ |+|++   . ++++|+..|.+
T Consensus       265 ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~-k-------------a~~~P~~ia-WHp~g---a-i~~V~s~qGel  323 (545)
T PF11768_consen  265 CARSPSEDKLVL--GCEDGSIILYDTTRGVTLLA-K-------------AEFIPTLIA-WHPDG---A-IFVVGSEQGEL  323 (545)
T ss_pred             EecCcccceEEE--EecCCeEEEEEcCCCeeeee-e-------------ecccceEEE-EcCCC---c-EEEEEcCCceE
Confidence            778999988875  66799999999876543222 2             112344555 99964   4 99999999999


Q ss_pred             EEEEcCC
Q 024245          234 LVWDIRN  240 (270)
Q Consensus       234 ~vwd~~~  240 (270)
                      .+||+.-
T Consensus       324 Q~FD~AL  330 (545)
T PF11768_consen  324 QCFDMAL  330 (545)
T ss_pred             EEEEeec
Confidence            9999864

>smart00320 WD40 WD40 repeats

Probab=98.32  E-value=1.2e-06  Score=44.47  Aligned_cols=38  Identities=29%  Similarity=0.657  Sum_probs=34.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd   46 (270)
                      +++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.6e-05  Score=63.46  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCcee
Q 024245           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (270)
                      =+-+.|||  .|.+|+|-...| |.+|--.+-....    .+.......                               
T Consensus       213 etyv~wSP--~GTYL~t~Hk~G-I~lWGG~~f~r~~----RF~Hp~Vq~-------------------------------  254 (698)
T KOG2314|consen  213 ETYVRWSP--KGTYLVTFHKQG-IALWGGESFDRIQ----RFYHPGVQF-------------------------------  254 (698)
T ss_pred             eeeEEecC--CceEEEEEeccc-eeeecCccHHHHH----hccCCCcee-------------------------------
Confidence            35789999  999999998877 7789655433221    111111111                               


Q ss_pred             eeccCCCCCeEecCCCCeEEEEecC---------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          145 DTDSLCDSKDDVPAEGPKYMAVAGE---------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       145 ~~~~~~~~~~~~s~~~~~~~~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                               +.|||+.+||+-.+..         +...+.|||+++|...+.|..        ..  .....+.+-.||.
T Consensus       255 ---------idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~--------~~--~~~~~WP~frWS~  315 (698)
T KOG2314|consen  255 ---------IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV--------IK--SPYLKWPIFRWSH  315 (698)
T ss_pred             ---------eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec--------cC--CCccccceEEecc
Confidence                     4578888777644322         225799999999999888873        11  1223444445887


Q ss_pred             CCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       216 ~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +   +. |+|.-.. ..|.||+... -.++..-.---..|....|+|.+.+|.
T Consensus       316 D---dK-y~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  316 D---DK-YFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             C---Cc-eeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCcceEE
Confidence            5   43 7777665 5789998776 333322222235788999999987764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.1e-06  Score=63.22  Aligned_cols=214  Identities=14%  Similarity=0.083  Sum_probs=124.2

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--C-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd   92 (270)
                      |++.|+-+.-.. .+++.+++.||.++.|--..  + +.+..+..|.  ..|.+++.+-  ++.++.|.+. |..++++|
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL--~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL--GVILSLAVSY--DGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHH--HHHHhhhccc--cceeEeeccCcccceeEEE
Confidence            777777766544 45999999999999997543  1 3444556666  5688999888  8888889887 99999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeee-ccCCCCC----eEecCCCCeEE
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDT-DSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~s~~~~~~~  164 (270)
                      +++-....  ...+...+...+.....+....   ......+...++|-........ ...-|..    +.+.+.+...+
T Consensus        83 vEn~Dmin--miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   83 VENFDMIN--MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             eeccchhh--hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence            98765432  2222222222222222221111   1222233344444333322111 1122222    56777777554


Q ss_pred             EEecCCCceEEEEeCCC------cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          165 AVAGEQLSEVEIWDLNT------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                        +....|.|.-|....      .+....++  ......+.. .-.....++. |+|++.    .+.+-+.|..|+++++
T Consensus       161 --SiD~~gmVEyWs~e~~~qfPr~~l~~~~K--~eTdLy~f~-K~Kt~pts~E-fsp~g~----qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  161 --SIDISGMVEYWSAEGPFQFPRTNLNFELK--HETDLYGFP-KAKTEPTSFE-FSPDGA----QISTLNPDRKVRGFVF  230 (558)
T ss_pred             --eccccceeEeecCCCcccCcccccccccc--ccchhhccc-ccccCccceE-EccccC----cccccCcccEEEEEEe
Confidence              566679999998762      11111111  000000110 1133456676 999643    8899999999999999


Q ss_pred             CCCCcceeee
Q 024245          239 RNPGIPLTAM  248 (270)
Q Consensus       239 ~~~~~~~~~~  248 (270)
                      ++ ++.++.+
T Consensus       231 Kt-Gklvqei  239 (558)
T KOG0882|consen  231 KT-GKLVQEI  239 (558)
T ss_pred             cc-chhhhhh
Confidence            98 6655444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.26  E-value=0.00021  Score=57.34  Aligned_cols=184  Identities=15%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      +..++.++.++.+..+|..+|+.+.......   .+.+.-..   .++.++.++.++.|..||.++++...    .....
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W----~~~~~  174 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLW----TYSRV  174 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceee----EEccC
Confidence            3455555666666666666666555443221   12211111   23566677778888999988876543    11111


Q ss_pred             cceE-----EEEeeccCCccceecCCCCceEEEeccCceeeec-cC---CCCC------eEecC--CCCeEEEEecCCCc
Q 024245          110 SYHF-----CKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLS  172 (270)
Q Consensus       110 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~s~--~~~~~~~~~~~~d~  172 (270)
                      ....     ....... .........+....++..+++.+-.. ..   +...      +.-+|  .+..+++  ++.+|
T Consensus       175 ~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g  251 (377)
T TIGR03300       175 TPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQG  251 (377)
T ss_pred             CCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCC
Confidence            0000     0000000 11111111223334555555432111 00   0000      00011  2345554  33579


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      .++.||..+++.+.....             .. ..... ..    ++  .++.++.||.|+.+|..+ ++.+...
T Consensus       252 ~l~a~d~~tG~~~W~~~~-------------~~-~~~p~-~~----~~--~vyv~~~~G~l~~~d~~t-G~~~W~~  305 (377)
T TIGR03300       252 RVAALDLRSGRVLWKRDA-------------SS-YQGPA-VD----DN--RLYVTDADGVVVALDRRS-GSELWKN  305 (377)
T ss_pred             EEEEEECCCCcEEEeecc-------------CC-ccCce-Ee----CC--EEEEECCCCeEEEEECCC-CcEEEcc
Confidence            999999999987766551             00 11111 11    23  677788999999999988 6655544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=4.2e-06  Score=66.86  Aligned_cols=155  Identities=15%  Similarity=0.146  Sum_probs=90.6

Q ss_pred             EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCc
Q 024245           54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK  133 (270)
Q Consensus        54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (270)
                      ..+.+|.  ..|..++--.  +.+-+++++.|++|++|.++...-..         ....|.+                 
T Consensus       729 ~nf~GH~--~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~---------~tsaCQf-----------------  778 (1034)
T KOG4190|consen  729 CNFTGHQ--EKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEI---------GTSACQF-----------------  778 (1034)
T ss_pred             ecccCcH--HHhHHHHhcc--cccceeeccCCceEEEEEeccccCcc---------ccceeee-----------------
Confidence            3456676  5588777666  67899999999999999997532111         0011111                 


Q ss_pred             eEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245          134 DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (270)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (270)
                                   +++.|..    +.|-.+-+++ + +  .||.|++||.--++++.++....     .|.  ..+.+.+
T Consensus       779 -------------TY~aHkk~i~~igfL~~lr~i-~-S--cD~giHlWDPFigr~Laq~~dap-----k~~--a~~~ikc  834 (1034)
T KOG4190|consen  779 -------------TYQAHKKPIHDIGFLADLRSI-A-S--CDGGIHLWDPFIGRLLAQMEDAP-----KEG--AGGNIKC  834 (1034)
T ss_pred             -------------EhhhccCcccceeeeecccee-e-e--ccCcceeecccccchhHhhhcCc-----ccC--CCceeEe
Confidence                         1111111    3344444433 2 3  37999999998888777655311     121  1223333


Q ss_pred             eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-----ccCCCeeEEEeecCCCcee
Q 024245          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.    +- +....++.++...+|+++|.+. .+-...++     +....+.+++..+.|..|.
T Consensus       835 l~----nv-~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA  892 (1034)
T KOG4190|consen  835 LE----NV-DRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLA  892 (1034)
T ss_pred             cc----cC-cchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence            32    10 2332444447889999999998 44333333     3446678899998887653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=1.7e-06  Score=72.73  Aligned_cols=186  Identities=10%  Similarity=0.138  Sum_probs=107.7

Q ss_pred             eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecC
Q 024245           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQA  129 (270)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  129 (270)
                      ..+.|..+.  ..-+|++|+-  +.++|+.|+..|.|++|++.+|....    ....+......+.+..  +........
T Consensus      1093 ~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~----s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1093 SWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE----SVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc----cccccccccccccccCCcceeeeeccc
Confidence            344555565  6689999999  88999999999999999999986543    2222222222222222  111111111


Q ss_pred             CC-CceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245          130 NE-PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (270)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (270)
                      .. ...+|+....-..+..+.+...+.|+..-..-++  |.......|||+.++..+.++-.       +-.. ..-.-.
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~--gt~~d~a~~YDvqT~~~l~tylt-------~~~~-~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRAL--GTEADDALLYDVQTCSPLQTYLT-------DTVT-SSYSNN 1234 (1516)
T ss_pred             cCchHHHhccccccCccccccccceeehhhhHHHHHh--cccccceEEEecccCcHHHHhcC-------cchh-hhhhcc
Confidence            11 3345666554444444444444778766443343  33346689999999998887442       1111 111113


Q ss_pred             eeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .. .|+|++.    +++-   ||  .+||++. .+.+..|...+..+ .-.|+|+|..+
T Consensus      1235 ~a-~FsP~D~----LIln---dG--vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1235 LA-HFSPCDT----LILN---DG--VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEV 1281 (1516)
T ss_pred             cc-ccCCCcc----eEee---Cc--eeeeecc-HHHHhhhhhheecc-cccccCCCceE
Confidence            33 4999632    4432   33  5899998 57777776555332 34588877643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.20  E-value=0.0013  Score=49.98  Aligned_cols=222  Identities=12%  Similarity=0.093  Sum_probs=116.3

Q ss_pred             EEEEEeC-CCCEEEEecCCCc-EEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-----CCCcEEEEEcc
Q 024245           22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-----RDGTVKCWDIE   94 (270)
Q Consensus        22 ~~~~~s~-~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~d~~i~~wd~~   94 (270)
                      ..++.+| .+..++.+-+-|+ ..+||..+++..+.+.......--=.-.|++  +|++|++.-     ..|.|-|||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEECc
Confidence            3577888 5667777777664 6789999998887775443221122457999  999999763     35789999998


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCC-------------------CceEEEeccCceeee-cc--CCCC
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-------------------PKDCYEREVGETVDT-DS--LCDS  152 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-~~--~~~~  152 (270)
                      .+ ..+  +-.+..+....-.+.+........++.++                   ...+.|..+++.+.. .+  .-|.
T Consensus        86 ~~-~~r--i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   86 RG-YRR--IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             CC-cEE--EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            32 111  22333332222112222222112222221                   122234455554443 22  1222


Q ss_pred             C----eEecCCCCeEEEEecCCCc-------eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          153 K----DDVPAEGPKYMAVAGEQLS-------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       153 ~----~~~s~~~~~~~~~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                      .    +++.++|.-+++  .-..|       -|-+++.  ++.+..+..+.     .-......++-+++ +++   ++.
T Consensus       163 lSiRHLa~~~~G~V~~a--~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~-----~~~~~l~~Y~gSIa-~~~---~g~  229 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFA--MQYQGDPGDAPPLVALHRR--GGALRLLPAPE-----EQWRRLNGYIGSIA-ADR---DGR  229 (305)
T ss_pred             cceeeEEecCCCcEEEE--EecCCCCCccCCeEEEEcC--CCcceeccCCh-----HHHHhhCCceEEEE-EeC---CCC
Confidence            2    778888753332  22222       1223322  22222222100     00112345788887 887   455


Q ss_pred             eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      ...+|+=..|.+.+||..+ ++.+....-  ..+..++-.+++
T Consensus       230 ~ia~tsPrGg~~~~~d~~t-g~~~~~~~l--~D~cGva~~~~~  269 (305)
T PF07433_consen  230 LIAVTSPRGGRVAVWDAAT-GRLLGSVPL--PDACGVAPTDDG  269 (305)
T ss_pred             EEEEECCCCCEEEEEECCC-CCEeecccc--CceeeeeecCCc
Confidence            3556666778999999998 776655542  234445555544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=8.5e-05  Score=59.84  Aligned_cols=97  Identities=14%  Similarity=0.162  Sum_probs=57.0

Q ss_pred             eEecCCCCeEEEEecCCCce--EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      -.|+|||+++++ +...||.  |.++|+..++ ...+..            ..+....-. |+|   ||+.++++.+..|
T Consensus       243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~-~~~Lt~------------~~gi~~~Ps-~sp---dG~~ivf~Sdr~G  304 (425)
T COG0823         243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKN-LPRLTN------------GFGINTSPS-WSP---DGSKIVFTSDRGG  304 (425)
T ss_pred             ccCCCCCCEEEE-EECCCCCccEEEEcCCCCc-ceeccc------------CCccccCcc-CCC---CCCEEEEEeCCCC
Confidence            569999988776 4555675  5556777666 333441            111122333 998   5665667777777


Q ss_pred             cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .-.||-....+.....+......-..-.|||||++|.
T Consensus       305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEE
Confidence            6555544332333344443333333788999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.17  E-value=0.0013  Score=48.91  Aligned_cols=205  Identities=10%  Similarity=0.050  Sum_probs=105.9

Q ss_pred             ccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .+.+-...+.+++|+|+ +.++++....+.|...+.+ |+.++.+..... +-...|++..  ++.++++--.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEEE
Confidence            45565667999999996 5577778888888888864 788887765442 4478999987  76666666668999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      ++.......    ...  .  ...+.+....                       ..-.+-+.++|.+.+..++++.  +.
T Consensus        92 ~~~~~~~~~----~~~--~--~~~~~l~~~~-----------------------~~N~G~EGla~D~~~~~L~v~k--E~  138 (248)
T PF06977_consen   92 TIDDDTTSL----DRA--D--VQKISLGFPN-----------------------KGNKGFEGLAYDPKTNRLFVAK--ER  138 (248)
T ss_dssp             EE----TT------EE--E--EEEEE---S--------------------------SS--EEEEEETTTTEEEEEE--ES
T ss_pred             EEecccccc----chh--h--ceEEeccccc-----------------------CCCcceEEEEEcCCCCEEEEEe--CC
Confidence            986542110    000  0  1111111100                       0000111178989888888753  33


Q ss_pred             ceEEEEeCCC---cceeeeeccCcCCCCCCcc--cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          172 SEVEIWDLNT---AERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       172 ~~i~iwd~~~---~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      .-..||.++.   ...+......      .+.  ........++. ++|.  .+. +++....+..|..+|..  ++++.
T Consensus       139 ~P~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~~  206 (248)
T PF06977_consen  139 KPKRLYEVNGFPGGFDLFVSDDQ------DLDDDKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVVS  206 (248)
T ss_dssp             SSEEEEEEESTT-SS--EEEE-H------HHH-HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EEE
T ss_pred             CChhhEEEccccCccceeecccc------ccccccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEEE
Confidence            4455665543   1111111100      010  01122355666 8886  566 77778888999999944  67666


Q ss_pred             eeeccC---------CCeeEEEeecCCCc
Q 024245          247 AMKVHL---------EPGLECSMWRNPIT  266 (270)
Q Consensus       247 ~~~~~~---------~~v~~~~~s~~g~~  266 (270)
                      .+.-..         ...-.|+|.++|.+
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCCE
Confidence            554322         24678999999965

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00056  Score=57.90  Aligned_cols=200  Identities=13%  Similarity=0.110  Sum_probs=106.0

Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc-----EEEEEccCCccC
Q 024245           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS   99 (270)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~   99 (270)
                      +|++.+..+|.|+.+|.|.+.+-. -+.++.++.+.. +.|..+....  ..++|++.++|+.     +++||++.....
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~-siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ-SIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecch-hhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence            356778899999999998887732 455577777763 2244444444  4478888887764     899999765322


Q ss_pred             CCCccc---------eecccceEEEEeeccCCccceecCCCCceEEE-----eccCceee--eccCCCCC---eEecCCC
Q 024245          100 SNPSLT---------IKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-----REVGETVD--TDSLCDSK---DDVPAEG  160 (270)
Q Consensus       100 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~---~~~s~~~  160 (270)
                      ..|...         .+..+...+.+.+...  ....+.|-..+.+-     +...+..+  ....+...   +++..++
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence            112111         1222333333333332  22333332222222     21222111  12223333   7888888


Q ss_pred             Ce-EEEEecCCCceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          161 PK-YMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       161 ~~-~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      .. +++++.   ..|.+|.+....+... +.        .|    .....+.. |++.  .+  .+++++ +.-+.+||.
T Consensus       184 ~s~lFv~Tt---~~V~~y~l~gr~p~~~~ld--------~~----G~~lnCss-~~~~--t~--qfIca~-~e~l~fY~s  242 (933)
T KOG2114|consen  184 KSVLFVATT---EQVMLYSLSGRTPSLKVLD--------NN----GISLNCSS-FSDG--TY--QFICAG-SEFLYFYDS  242 (933)
T ss_pred             ceeEEEEec---ceeEEEEecCCCcceeeec--------cC----Cccceeee-cCCC--Cc--cEEEec-CceEEEEcC
Confidence            77 444333   5799999883332222 33        22    22344443 6653  12  244444 347999998


Q ss_pred             CCCCcceeeee-ccC
Q 024245          239 RNPGIPLTAMK-VHL  252 (270)
Q Consensus       239 ~~~~~~~~~~~-~~~  252 (270)
                      .. ..+...+. +|.
T Consensus       243 d~-~~~cfaf~~g~k  256 (933)
T KOG2114|consen  243 DG-RGPCFAFEVGEK  256 (933)
T ss_pred             CC-cceeeeecCCCe
Confidence            86 55555555 554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.11  E-value=0.0005  Score=57.11  Aligned_cols=182  Identities=11%  Similarity=0.062  Sum_probs=100.3

Q ss_pred             EeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CC-cEEEEEccCCccCC
Q 024245           26 FHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DG-TVKCWDIENGGLSS  100 (270)
Q Consensus        26 ~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~-~i~~wd~~~~~~~~  100 (270)
                      +.|||+.+.. .-..+.+.+.|.++.+....+....   ....++++|  +|.++++.+.   .+ ++..-+......  
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~--  272 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDW--  272 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECC--CCCEEEEeccCcccCcceeeeccccCce--
Confidence            4556665433 3335667778888776666655442   246778889  8888877753   21 222222211110  


Q ss_pred             CCccceecccceEEEEeeccCCccceecCCCCceEEEecc-----CceeeeccCCCCC--eEecCCCCeEEEEecCCCce
Q 024245          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-----GETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~  173 (270)
                        ...+.-..  ..  .......... ..++.+..+|..+     .+.......+...  +.++|||+++++ ++..+.+
T Consensus       273 --~vvfni~~--ie--a~vkdGK~~~-V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV-anklS~t  344 (635)
T PRK02888        273 --VVVFNIAR--IE--EAVKAGKFKT-IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA-NGKLSPT  344 (635)
T ss_pred             --EEEEchHH--HH--HhhhCCCEEE-ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE-eCCCCCc
Confidence              00000000  00  0000000111 1234455667666     3344444555555  999999998886 5667899


Q ss_pred             EEEEeCCCcce------------eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          174 VEIWDLNTAER------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       174 i~iwd~~~~~~------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      |.|+|+.+.+.            ..+.+.             .......+ |.+   +|. ...|-.-|..|..||+..
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevev-------------GlGPLHTa-FDg---~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL-------------GLGPLHTA-FDG---RGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeecc-------------CCCcceEE-ECC---CCC-EEEeEeecceeEEEehHH
Confidence            99999987553            222221             11122333 876   454 788888999999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.10  E-value=0.0005  Score=61.01  Aligned_cols=94  Identities=11%  Similarity=0.075  Sum_probs=53.2

Q ss_pred             eEecCCCCeEEEEecC--CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          154 DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      ++|.|.|. +++++-.  ....|.+|.- .|..-..|..+       . .+....+..+. |+++   +. .||..-.|.
T Consensus       262 l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~-------~-~~~~~~v~~l~-Wn~d---s~-iLAv~~~~~  326 (928)
T PF04762_consen  262 LSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLR-------F-DPEEEKVIELA-WNSD---SE-ILAVWLEDR  326 (928)
T ss_pred             ccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecC-------C-CCCCceeeEEE-ECCC---CC-EEEEEecCC
Confidence            67999996 4443322  1245666654 35555555421       1 12344678888 9985   43 777776554


Q ss_pred             cEEEEEcCCCC-cceeeeecc-CCCeeEEEeecC
Q 024245          232 SILVWDIRNPG-IPLTAMKVH-LEPGLECSMWRN  263 (270)
Q Consensus       232 ~i~vwd~~~~~-~~~~~~~~~-~~~v~~~~~s~~  263 (270)
                       |.+|-..+-. -..+.+... ...+..+.|+|.
T Consensus       327 -vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  327 -VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             -ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence             9999887622 122333322 233455888875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=1.2e-06  Score=70.90  Aligned_cols=186  Identities=18%  Similarity=0.203  Sum_probs=109.5

Q ss_pred             cccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeC----CCcEE
Q 024245           18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVK   89 (270)
Q Consensus        18 ~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d~~i~   89 (270)
                      ...+.|+++..  +..+++.|..+|.|.+-..+...-  ....+.+.  .++++++|++- |.+.|+.|-.    |-.+.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence            45677888766  335889999999999998865432  22334455  66999999985 5577777632    45799


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +||+.++-...       .....+.   - .                          .+.+...++|-.+.+ +++ +|.
T Consensus       133 Iwdi~s~ltvP-------ke~~~fs---~-~--------------------------~l~gqns~cwlrd~k-lvl-aGm  173 (783)
T KOG1008|consen  133 IWDINSLLTVP-------KESPLFS---S-S--------------------------TLDGQNSVCWLRDTK-LVL-AGM  173 (783)
T ss_pred             ceecccccCCC-------ccccccc---c-c--------------------------cccCccccccccCcc-hhh-ccc
Confidence            99998863211       0000000   0 0                          111111144554544 333 577


Q ss_pred             CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE-cCCCCcceee
Q 024245          170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA  247 (270)
Q Consensus       170 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd-~~~~~~~~~~  247 (270)
                      ....++++|++... ....+..+      -|    .+...  ..|+|+      |+++-. ||.|-+|| .++...++..
T Consensus       174 ~sr~~~ifdlRqs~~~~~svnTk------~v----qG~tV--dp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSVSSVNTK------YV----QGITV--DPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             ccchhhhhhhhhhhhhhhhhhhh------hc----cccee--cCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence            77899999998332 22222210      11    12221  136653      666655 99999999 5555556665


Q ss_pred             eeccCC----CeeEEEeecCC
Q 024245          248 MKVHLE----PGLECSMWRNP  264 (270)
Q Consensus       248 ~~~~~~----~v~~~~~s~~g  264 (270)
                      +.....    .+..++|.|..
T Consensus       235 i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             HhhCCCCcccceeeEEeccCC
Confidence            553333    38899999854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.08  E-value=2.8e-05  Score=57.83  Aligned_cols=144  Identities=16%  Similarity=0.218  Sum_probs=85.7

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCC---cceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAA---HGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..|.--|++++|+.|.+.++++. |-.|.+|+++--.   .+--++.|..+   .-|++..|+|... +.+.-.+..|.|
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~I  246 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEI  246 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcE
Confidence            56888899999999998888875 5679999986422   12222233211   3478899999633 667777888999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++-|++...+...+...+......   ....+-..                       ....-..+.|+++|++++  +-
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~---v~~~ff~e-----------------------ivsSISD~kFs~ngryIl--sR  298 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDG---VDVDFFEE-----------------------IVSSISDFKFSDNGRYIL--SR  298 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCc---ccchhHHH-----------------------HhhhhcceEEcCCCcEEE--Ee
Confidence            999998654322111111100000   00000000                       000000156999998765  34


Q ss_pred             CCCceEEEEeCCCc-ceeeeec
Q 024245          169 EQLSEVEIWDLNTA-ERCTRLH  189 (270)
Q Consensus       169 ~~d~~i~iwd~~~~-~~~~~~~  189 (270)
                      + --+++|||.+.. .++.++.
T Consensus       299 d-yltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         299 D-YLTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             c-cceEEEEecccccCCceeec
Confidence            3 479999999864 4677764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=6.9e-05  Score=62.51  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (270)
                      ..-.++.|+|  . .+|+-|+. ..|.+-|..+.+.++    .++.+......+.+...+...                 
T Consensus        16 sN~~A~Dw~~--~-GLiAygsh-slV~VVDs~s~q~iq----sie~h~s~V~~VrWap~~~p~-----------------   70 (1062)
T KOG1912|consen   16 SNRNAADWSP--S-GLIAYGSH-SLVSVVDSRSLQLIQ----SIELHQSAVTSVRWAPAPSPR-----------------   70 (1062)
T ss_pred             ccccccccCc--c-ceEEEecC-ceEEEEehhhhhhhh----ccccCccceeEEEeccCCCch-----------------
Confidence            3357889998  5 56666654 468889988876654    444444444333333221110                 


Q ss_pred             eeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       143 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                                 --+||....++++++...|.|.+||...+..+..+.        .|..    .+..++ |-|...+.+.
T Consensus        71 -----------~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------~~~~----~~qdl~-W~~~rd~Srd  126 (1062)
T KOG1912|consen   71 -----------DLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------HSND----SVQDLC-WVPARDDSRD  126 (1062)
T ss_pred             -----------hccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------CCCc----chhhee-eeeccCcchh
Confidence                       125555455677788889999999999888887777        3433    345555 7766556654


Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +|++-.....|.+|+..+ |+.++..........++.+.|
T Consensus       127 ~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             eeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCC
Confidence            777777788999999999 777776665444555577766

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00015  Score=61.25  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.......|.  .+|..+.|++  +|+.++++..-|.+.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence            5679999988899999999999999988766665555676  7799999999  999999999999999998763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.04  E-value=4.3e-06  Score=67.79  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=98.4

Q ss_pred             cccccccEEEEEEeC-CCCEEEEec----CCCcEEEEeCCCC--ceeE--EEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           14 LRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-~~~~l~s~~----~dg~i~vwd~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ..+|....++++|++ |...||+|-    .|..+.|||+.++  .+..  .+.+. ......+++|..  +..++++|..
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm~  174 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGMT  174 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhcccc
Confidence            446778899999999 667888773    3678999999876  2222  22221 114567889986  8788889999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCccceecCCCCceEEEe-ccCceeeeccC--------CCCCe
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYER-EVGETVDTDSL--------CDSKD  154 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~  154 (270)
                      .+.++++|++......   ..+.+.  ....+.+.. .+........+...+||. ..-+.+.....        .+..+
T Consensus       175 sr~~~ifdlRqs~~~~---~svnTk--~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSV---SSVNTK--YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             cchhhhhhhhhhhhhh---hhhhhh--hcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence            9999999998432111   111111  111122222 344444555667777883 33222221111        11128


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCC
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLN  180 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~  180 (270)
                      +|+|....++++..-+.++|+++|+.
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEeccc
Confidence            99998877787666677899999986

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.04  E-value=0.0025  Score=47.44  Aligned_cols=141  Identities=12%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee
Q 024245           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL  118 (270)
Q Consensus        39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (270)
                      +|.|..||..+|+.+.............+..+ +  +++.+++++.++.|..||..+++...  ...+.......  ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~l~~~d~~tG~~~W--~~~~~~~~~~~--~~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P--DGGRVYVASGDGNLYALDAKTGKVLW--RFDLPGPISGA--PVV   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E--ETTEEEEEETTSEEEEEETTTSEEEE--EEECSSCGGSG--EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E--eCCEEEEEcCCCEEEEEECCCCCEEE--Eeeccccccce--eee
Confidence            68899999999999988865221122222233 2  34778888899999999999997643  11111110010  011


Q ss_pred             ccCCccceecCCCCceEEEeccCceeeec-cCC---CC---CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          119 VKEPYANAKQANEPKDCYEREVGETVDTD-SLC---DS---KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~---~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .. .........+....++..+++..-.. ...   ..   .......+..+++..  .++.|..+|+++|+.+....
T Consensus        75 ~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen   75 DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--SSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--TCSEEEEEETTTTEEEEEEE
T ss_pred             cc-cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe--ccCcEEEEecCCCcEEEEee
Confidence            11 11111112234455666666654431 211   11   133334466666533  36999999999999988877

...

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4e-05  Score=62.22  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=69.5

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      -...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..++  ..+. +++|.|  ||+.|+.|-.||+|++-|+++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~--~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG--ENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC--CccceeeeecC--CCCEEEEEecCCeEEEEEccC
Confidence            34578889999999999999999999999998 78888888666  4466 999999  999999999999999999999


Q ss_pred             CccCC
Q 024245           96 GGLSS  100 (270)
Q Consensus        96 ~~~~~  100 (270)
                      +..+.
T Consensus        94 ~~~l~   98 (665)
T KOG4640|consen   94 GGRLV   98 (665)
T ss_pred             CCcee
Confidence            87654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.0014  Score=53.06  Aligned_cols=163  Identities=12%  Similarity=0.020  Sum_probs=90.2

Q ss_pred             cccEEEEEEeCCCCEEEEe---cCC-CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEE--E
Q 024245           18 RASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVK--C   90 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~---~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~--~   90 (270)
                      ...+..-+|+|++..++--   ... ..+.++++++++....+...   ..-..-+|+|  +|++|+ +...||...  +
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCCccEEE
Confidence            4556677899988754433   223 46999999988766655533   2246788999  988876 666777554  5


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~  166 (270)
                      .|+.++...+  +....+... ...++.++.........++.-.+|  +.+.....+.+..+...  -.++|||+++++.
T Consensus       267 ~dl~~~~~~~--Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         267 MDLDGKNLPR--LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EcCCCCccee--cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEE
Confidence            5666655322  111111111 112233333222333333333443  33444433333333333  7899999988876


Q ss_pred             ecCCCce--EEEEeCCCcceeeeec
Q 024245          167 AGEQLSE--VEIWDLNTAERCTRLH  189 (270)
Q Consensus       167 ~~~~d~~--i~iwd~~~~~~~~~~~  189 (270)
                      + ..+|.  |.+.|+.++...+.+.
T Consensus       344 ~-~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         344 S-SSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             e-ccCCceeeEEeccCCCCcEEEcc
Confidence            5 33454  7777777666544444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.00013  Score=60.95  Aligned_cols=171  Identities=13%  Similarity=0.083  Sum_probs=101.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .+.+.|++++  +++++-|+-+|.|++.+... .. .+...|.  . .     .-  +|.+++||+.||+|.|-.+-+.+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s--~-~-----~~--~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHS--S-S-----IL--EGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccc--c-c-----cc--CCceEEEecCCCcEEEeeccCCc
Confidence            4567777776  66899999999999999763 33 3333343  1 1     34  88999999999999999887765


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCC----CCeEEEEecCCCce
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE----GPKYMAVAGEQLSE  173 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~d~~  173 (270)
                      ...  ...++.   ....                                      ++++|+    ....++ +|+..| 
T Consensus       105 ~~~--~~df~r---piks--------------------------------------ial~Pd~~~~~sk~fv-~GG~ag-  139 (846)
T KOG2066|consen  105 EIT--QYDFKR---PIKS--------------------------------------IALHPDFSRQQSKQFV-SGGMAG-  139 (846)
T ss_pred             cce--eEecCC---ccee--------------------------------------EEeccchhhhhhhhee-ecCcce-
Confidence            322  111111   1111                                      234444    122333 576666 


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  253 (270)
                      +.++.-+=-.......        .|  ...+.+.++. |.-+      ++|=++.+ -|+|||+.+ ++.+..++....
T Consensus       140 lvL~er~wlgnk~~v~--------l~--~~eG~I~~i~-W~g~------lIAWand~-Gv~vyd~~~-~~~l~~i~~p~~  200 (846)
T KOG2066|consen  140 LVLSERNWLGNKDSVV--------LS--EGEGPIHSIK-WRGN------LIAWANDD-GVKVYDTPT-RQRLTNIPPPSQ  200 (846)
T ss_pred             EEEehhhhhcCcccee--------ee--cCccceEEEE-ecCc------EEEEecCC-CcEEEeccc-cceeeccCCCCC
Confidence            7777643211111111        22  2467888988 9742      66666555 589999998 665555543322


Q ss_pred             C------eeEEEeecCCCc
Q 024245          254 P------GLECSMWRNPIT  266 (270)
Q Consensus       254 ~------v~~~~~s~~g~~  266 (270)
                      .      ...+.|.++..+
T Consensus       201 ~~R~e~fpphl~W~~~~~L  219 (846)
T KOG2066|consen  201 SVRPELFPPHLHWQDEDRL  219 (846)
T ss_pred             CCCcccCCCceEecCCCeE
Confidence            2      235666665544

>smart00320 WD40 WD40 repeats

Probab=97.91  E-value=5.1e-05  Score=38.06  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ++...+..|.  ..|.++.|.+  ++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHT--GPVTSVAFSP--DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecC--CceeEEEECC--CCCEEEEecCCCeEEEcC
Confidence            4556666676  5699999999  778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.88  E-value=0.0011  Score=52.98  Aligned_cols=225  Identities=13%  Similarity=0.163  Sum_probs=104.4

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec------CCCcceEEEEEeeC---CCC---C
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH------SAAHGIVSVATGPS---IGL---N   77 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~---~   77 (270)
                      |+..++..++.|++++.|.-| ++|.|..+|.+.|.|++....+..-...      .....|+++.|.-.   .|+   -
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            445555668999999998666 9999999999999999876666542211      12256888988731   122   3


Q ss_pred             EEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCCCCCeE
Q 024245           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLCDSKDD  155 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  155 (270)
                      .++.|...|.+.+|.+.-....   .+.     .......        ....+....+  ++..+++........-..+.
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g---~f~-----v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~  220 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNG---RFS-----VQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLS  220 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG----EE-----EEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred             EEEEEeCCCCEEEEEEecCCCC---ceE-----EEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence            6788999999999987521100   000     0000000        0000000000  11111111000000000000


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-CCCceEEEEecCCCcEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-~~g~~~l~~~~~dg~i~  234 (270)
                      -...-+.++++++  +..++++...+.+...+...            ..-.+..+. +-+.. ..+...|++-..+|.|+
T Consensus       221 ~g~~i~g~vVvvS--e~~irv~~~~~~k~~~K~~~------------~~~~~~~~~-vv~~~~~~~~~~Lv~l~~~G~i~  285 (395)
T PF08596_consen  221 KGISIPGYVVVVS--ESDIRVFKPPKSKGAHKSFD------------DPFLCSSAS-VVPTISRNGGYCLVCLFNNGSIR  285 (395)
T ss_dssp             GT----EEEEEE---SSEEEEE-TT---EEEEE-S------------S-EEEEEEE-EEEEE-EEEEEEEEEEETTSEEE
T ss_pred             cCCCcCcEEEEEc--ccceEEEeCCCCcccceeec------------cccccceEE-EEeecccCCceEEEEEECCCcEE
Confidence            0001123444444  47899999998876655442            111222232 42210 01223888889999999


Q ss_pred             EEEcCCCCcceeeeeccC----CCeeEEEeecCCCce
Q 024245          235 VWDIRNPGIPLTAMKVHL----EPGLECSMWRNPITM  267 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l  267 (270)
                      ++.+.. -+.+..++-..    ..+...+++++|..+
T Consensus       286 i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  286 IYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             EEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             EEECCC-chHhhcccCCCccccccccccEECCCCCEE
Confidence            999998 56665555422    234567778887754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.80  E-value=0.0028  Score=40.27  Aligned_cols=67  Identities=21%  Similarity=0.329  Sum_probs=51.5

Q ss_pred             EEEEEEeC-C--C-CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           21 VTDVCFHQ-T--K-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        21 v~~~~~s~-~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      |++|++.. +  | ..|+.|+.|..|++|+-  .+.+.++...   +.|.++.-..  . ..++.+..+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcc
Confidence            67777766 3  3 48999999999999974  3667666655   5588888776  5 7799999999999887643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0022  Score=53.32  Aligned_cols=77  Identities=10%  Similarity=0.095  Sum_probs=59.5

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee---EEEeecC-CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---SSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      -.+.+..+..|++..++|.|+..|.|.++-+.++.+.   ..-..+. +...|++++|++  ++..+++|...|+|.+-.
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence            4556777788888889999999999999988764221   1111111 126799999999  999999999999999988


Q ss_pred             ccC
Q 024245           93 IEN   95 (270)
Q Consensus        93 ~~~   95 (270)
                      +.+
T Consensus       153 L~s  155 (726)
T KOG3621|consen  153 LDS  155 (726)
T ss_pred             ech
Confidence            877

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.79  E-value=0.009  Score=48.33  Aligned_cols=196  Identities=15%  Similarity=0.129  Sum_probs=93.0

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccc
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  111 (270)
                      .++.+..++.|..+|.++|+.+..+........+.. .-+|...+..++.++.++.+..+|..+++..............
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~  240 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT  240 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence            444556667777777777776665543211000000 0111111245666777888888888888654311000000000


Q ss_pred             eE-----EEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          112 HF-----CKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       112 ~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      ..     ...++....... .....+....+|..+++.+=....+.. ......+..+++  ++.+|.+..+|..+++.+
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~vy~--~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAVDGGRIYL--VDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEEECCEEEE--EcCCCeEEEEECCCCcEE
Confidence            00     000000000111 111223334445555543211111110 111223455654  335799999999999876


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .+....      .+     ....+.. ..    ++  +|+.++.||.|++.|..+ ++.+...+.
T Consensus       318 W~~~~~------~~-----~~~~sp~-v~----~g--~l~v~~~~G~l~~ld~~t-G~~~~~~~~  363 (394)
T PRK11138        318 WSQSDL------LH-----RLLTAPV-LY----NG--YLVVGDSEGYLHWINRED-GRFVAQQKV  363 (394)
T ss_pred             Eccccc------CC-----CcccCCE-EE----CC--EEEEEeCCCEEEEEECCC-CCEEEEEEc
Confidence            554310      01     0111111 21    33  688889999999999998 787776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.77  E-value=0.0038  Score=50.75  Aligned_cols=172  Identities=15%  Similarity=0.124  Sum_probs=88.2

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .++.+....-....++++|+|++++.+ .||...|+.....+...  .+.     -....|.+  . +.+++-...++|.
T Consensus        24 ~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G~-----g~~~vw~~--~-n~yAv~~~~~~I~   92 (443)
T PF04053_consen   24 SVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FGS-----GLSFVWSS--R-NRYAVLESSSTIK   92 (443)
T ss_dssp             --EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EEE------SEEEE-T--S-SEEEEE-TTS-EE
T ss_pred             EeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cCc-----eeEEEEec--C-ccEEEEECCCeEE
Confidence            334444455567899999999998885 47888888844333332  222     35678887  5 5577777788899


Q ss_pred             EE-EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           90 CW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        90 ~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++ +++... .+    .+.... ....+                                       |.  |. +++..+
T Consensus        93 I~kn~~~~~-~k----~i~~~~-~~~~I---------------------------------------f~--G~-LL~~~~  124 (443)
T PF04053_consen   93 IYKNFKNEV-VK----SIKLPF-SVEKI---------------------------------------FG--GN-LLGVKS  124 (443)
T ss_dssp             EEETTEE-T-T---------SS--EEEE---------------------------------------E---SS-SEEEEE
T ss_pred             EEEcCcccc-ce----EEcCCc-ccceE---------------------------------------Ec--Cc-EEEEEC
Confidence            96 333221 11    111110 00000                                       22  44 344344


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC------
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG------  242 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~------  242 (270)
                        ++.|.+||..+++.+.++..             . .+..+. |+++   |. +++..+.+ .+++++... .      
T Consensus       125 --~~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~~-~i~il~~~~-~~~~~~~  181 (443)
T PF04053_consen  125 --SDFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTKD-SIYILKYNL-EAVAAIP  181 (443)
T ss_dssp             --TTEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBT
T ss_pred             --CCCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeCC-eEEEEEecc-hhccccc
Confidence              35899999999999999982             2 256666 9985   44 67777644 777777553 1      


Q ss_pred             -----cceeeeeccCCCeeEEEeecC
Q 024245          243 -----IPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       243 -----~~~~~~~~~~~~v~~~~~s~~  263 (270)
                           ..+..+..-...|.+.+|..|
T Consensus       182 ~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  182 EEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             TTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             ccCchhceEEEEEecceeEEEEEEcC
Confidence                 133444333567888888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00018  Score=55.51  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=63.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++|||..+.++. .++.+..|+|.|+++...+..+.        .+     ..+++++ |.-++   +.+|.+|-..|.|
T Consensus       199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a~-----~~~wSC~-wDlde---~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------AY-----NQIWSCC-WDLDE---RHVIYAGLQNGMV  260 (463)
T ss_pred             hccCccccceee-eeccCceEEEEecccceeeehee--------cc-----CCceeee-eccCC---cceeEEeccCceE
Confidence            889999876554 56778999999999999888887        33     4677877 88753   3499999999999


Q ss_pred             EEEEcCCCCcceeeeec
Q 024245          234 LVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~  250 (270)
                      .+||++.+..++..+.+
T Consensus       261 lvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVA  277 (463)
T ss_pred             EEEEccCCCchHhhhhh
Confidence            99999987666665544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.73  E-value=0.00015  Score=38.48  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT   52 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~   52 (270)
                      ...|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 4543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.70  E-value=0.013  Score=51.94  Aligned_cols=29  Identities=10%  Similarity=0.095  Sum_probs=24.1

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEe
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWD   46 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd   46 (270)
                      ...|.+++||||++.++..+.++++.+-+
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            56899999999999998888877776643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.67  E-value=0.0043  Score=50.16  Aligned_cols=64  Identities=11%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-EEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +..++.++.+|.+..+|.++|+.+.......   .+.+ ...    .+..++.+..++.+.-+|.++++...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W  184 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKW  184 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccCCCEee
Confidence            3466777889999999999999887765442   2222 122    22567778888999999999987654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.62  E-value=0.025  Score=45.93  Aligned_cols=67  Identities=18%  Similarity=0.172  Sum_probs=47.7

Q ss_pred             EEEeCCCCEEEEecCC----------C-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           24 VCFHQTKPILFAGTTG----------G-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ++.+|.|..+|....+          . .|.||+.. |+.+..+.-..  +.|.++.|+.  + ..|+....||.+++||
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYD  107 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEe
Confidence            4555655555555333          1 48888865 67777766555  5699999988  6 6677788999999999


Q ss_pred             ccCC
Q 024245           93 IENG   96 (270)
Q Consensus        93 ~~~~   96 (270)
                      +...
T Consensus       108 ~~G~  111 (410)
T PF04841_consen  108 LFGE  111 (410)
T ss_pred             CCCc
Confidence            8643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.58  E-value=0.021  Score=44.17  Aligned_cols=204  Identities=12%  Similarity=0.057  Sum_probs=104.9

Q ss_pred             EEEEeCCCCEEEEe--cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-CccC
Q 024245           23 DVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLS   99 (270)
Q Consensus        23 ~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~   99 (270)
                      .++++.||++++..  +-.-+|.|-|+..++.+.++....    +..+  .|..+ ..+.+.+.||.+....+.. |+..
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i--yP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI--YPSGN-RGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE--EEEET-TEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE--EecCC-CceEEEecCCceEEEEECCCCCEe
Confidence            35788889877653  445679999999988888876543    3333  34213 5688999999999998874 3321


Q ss_pred             CCCccceecccc-eEEEEee-ccCCccceecCCCCceEEEeccCce---------------eeeccCCCCCeEecCCCCe
Q 024245          100 SNPSLTIKTNSY-HFCKLSL-VKEPYANAKQANEPKDCYEREVGET---------------VDTDSLCDSKDDVPAEGPK  162 (270)
Q Consensus       100 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~~~~  162 (270)
                      ......+..... .+..-.. .......+....+.+...++.....               ..+...|-+.+++++...+
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            100000000000 0000000 0000011111122222222222210               1112222333788776665


Q ss_pred             EEEEe--c----CCC--ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCCCcE
Q 024245          163 YMAVA--G----EQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDGSI  233 (270)
Q Consensus       163 ~~~~~--~----~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~dg~i  233 (270)
                      +++.-  |    .+|  ..|-++|+.+++.+.++..             ...+.++. .+-+  +.. +|+ ....++.+
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-------------~~~~~Si~-Vsqd--~~P-~L~~~~~~~~~l  314 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-------------EHPIDSIA-VSQD--DKP-LLYALSAGDGTL  314 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-------------EEEESEEE-EESS--SS--EEEEEETTTTEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-------------CCccceEE-EccC--CCc-EEEEEcCCCCeE
Confidence            55432  1    112  2477779999999999984             23455666 6553  333 554 45578999


Q ss_pred             EEEEcCCCCcceeeeecc
Q 024245          234 LVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~  251 (270)
                      .+||..+ ++.+.+++.-
T Consensus       315 ~v~D~~t-Gk~~~~~~~l  331 (342)
T PF06433_consen  315 DVYDAAT-GKLVRSIEQL  331 (342)
T ss_dssp             EEEETTT---EEEEE---
T ss_pred             EEEeCcC-CcEEeehhcc
Confidence            9999999 8888888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.55  E-value=0.0076  Score=38.33  Aligned_cols=31  Identities=10%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             eEEEEEeeCCC--CCEEEEEeCCCcEEEEEccC
Q 024245           65 IVSVATGPSIG--LNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        65 v~~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~   95 (270)
                      |.+|++.....  .+.|+.|+.|..|++|+-+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e   34 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE   34 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc
Confidence            77888877533  26899999999999998653

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.55  E-value=0.0022  Score=53.42  Aligned_cols=37  Identities=11%  Similarity=-0.067  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCC----CCcceeeeeccCCCeeEEEeecCCCce
Q 024245          230 DGSILVWDIRN----PGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       230 dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++.|.+.|.++    ..+.+..+.. ...+..+++||||+++
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkyl  335 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYF  335 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEE
Confidence            46788899886    2345555553 4568999999999986

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.49  E-value=0.018  Score=45.85  Aligned_cols=222  Identities=10%  Similarity=0.005  Sum_probs=106.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC---------------CcceEEEEEeeCCCCCEEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ...+....|||+|+.+|... ++.|.+++..++...+.-.....               -+.-.++-|+|  ++++|+..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEE
Confidence            56788899999999988875 57899999887754432211100               01235788999  99998865


Q ss_pred             eC-CCcEEEEEccCCccCCC--C-ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC----CCCC-
Q 024245           83 GR-DGTVKCWDIENGGLSSN--P-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL----CDSK-  153 (270)
Q Consensus        83 ~~-d~~i~~wd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-  153 (270)
                      .. +..|+.+.+........  | ...++        ....+...     ......++++..++.......    .... 
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y  185 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIR--------YPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYY  185 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE----------BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccc--------cCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence            43 44555554432111000  0 00000        00000000     111123345544443221111    1111 


Q ss_pred             ---eEecCCCCeEEEEecCCC---ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEE
Q 024245          154 ---DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLA  226 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~  226 (270)
                         +.|++++..+++...+.+   ..+.+.|..++.....+..       ....... ...... |. ++  ++. +|..
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------~~~~Wv~-~~~~~~-~~~~~--~~~-~l~~  253 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------TSDGWVD-VYDPPH-FLGPD--GNE-FLWI  253 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------ESSSSSS-SSSEEE-E-TTT--SSE-EEEE
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-------cCCccee-eecccc-cccCC--CCE-EEEE
Confidence               789999885555444333   3466678877665433332       0111111 111222 43 43  333 6666


Q ss_pred             ecCCCcEEEEEcCCCCcceeeeeccCCCeeE-EEeecCCCce
Q 024245          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLE-CSMWRNPITM  267 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l  267 (270)
                      ...||--+||-+...+.....+....-.|+. +.|++++..|
T Consensus       254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~i  295 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRI  295 (353)
T ss_dssp             EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEE
T ss_pred             EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEE
Confidence            6688865555444434444455544556654 6777776643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.039  Score=44.41  Aligned_cols=185  Identities=13%  Similarity=0.069  Sum_probs=111.7

Q ss_pred             cEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEEEEccC
Q 024245           20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN   95 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~   95 (270)
                      ....++++++++.++.+..   ++.+.+.|..+.+.+.......  .+ ..+++.|  +|+.++... .++.|.+.|...
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence            4467889998887666554   6889999998888888755443  34 8999999  988766554 788999999665


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCC-CceE
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEV  174 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-d~~i  174 (270)
                      ....+      .......                                .....+..+.++|+|.+++++.... ++.+
T Consensus       192 ~~v~~------~~~~~~~--------------------------------~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         192 NSVVR------GSVGSLV--------------------------------GVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             cceec------ccccccc--------------------------------ccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            54321      0000000                                0111111166889999777644332 2689


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC--
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL--  252 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--  252 (270)
                      ...|..++.....-..       .-   .. ....+. ..|+   |....+.-+..+.+.+-|..+ ...........  
T Consensus       234 ~~id~~~~~v~~~~~~-------~~---~~-~~~~v~-~~p~---g~~~yv~~~~~~~V~vid~~~-~~v~~~~~~~~~~  297 (381)
T COG3391         234 LKIDTATGNVTATDLP-------VG---SG-APRGVA-VDPA---GKAAYVANSQGGTVSVIDGAT-DRVVKTGPTGNEA  297 (381)
T ss_pred             EEEeCCCceEEEeccc-------cc---cC-CCCcee-ECCC---CCEEEEEecCCCeEEEEeCCC-Cceeeeecccccc
Confidence            9999988776655221       00   11 233344 7774   442333335568899999887 55555443322  


Q ss_pred             -CCeeEEEeecC
Q 024245          253 -EPGLECSMWRN  263 (270)
Q Consensus       253 -~~v~~~~~s~~  263 (270)
                       ..+..+++.+.
T Consensus       298 ~~~~~~~~~~~~  309 (381)
T COG3391         298 LGEPVSIAISPL  309 (381)
T ss_pred             cccceeccceee
Confidence             23455555543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.0012  Score=51.93  Aligned_cols=173  Identities=8%  Similarity=-0.018  Sum_probs=98.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC---EEE-EEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN---KVI-SQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~-s~~   83 (270)
                      +.+..++.|-..|.+++.+-++.++.|.+. |..++++|+++-..+.-++...-   --.+.|... .|.   .|+ +.-
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---Pg~a~wv~s-kGd~~s~IAVs~~  119 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL---PGFAEWVTS-KGDKISLIAVSLF  119 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC---CCceEEecC-CCCeeeeEEeecc
Confidence            356677788899999999999999999777 99999999987655533332221   122333321 221   333 344


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEecc-Cce----eee----------c
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREV-GET----VDT----------D  147 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~----~~~----------~  147 (270)
                      .++.+.++|-....+..-....++..+.  ..+.......... ...++-+..|..+. .+.    +..          .
T Consensus       120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV--~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f  197 (558)
T KOG0882|consen  120 KSGKIFVVDGFGDFCQDGYFKKLHFSPV--KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF  197 (558)
T ss_pred             cCCCcEEECCcCCcCccceecccccCce--EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence            6788999998766543211112222222  2222222222222 22234445555442 111    110          1


Q ss_pred             cCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       148 ~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      ......   +.|+|+|..+-  +-+.|..|++++..+++.++.+.
T Consensus       198 ~K~Kt~pts~Efsp~g~qis--tl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  198 PKAKTEPTSFEFSPDGAQIS--TLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cccccCccceEEccccCccc--ccCcccEEEEEEeccchhhhhhh
Confidence            111111   89999997653  34469999999999998777665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.041  Score=44.29  Aligned_cols=184  Identities=15%  Similarity=0.083  Sum_probs=109.8

Q ss_pred             EEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEccCCc
Q 024245           22 TDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG   97 (270)
Q Consensus        22 ~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~   97 (270)
                      ..++.++.+. ..+....+..|.+.|....+.........   ....++++|  +++.+..+..   ++++.+.|..+++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence            4677788777 44445556889999988777776665443   357899999  8777765554   6778888877765


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEE
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iw  177 (270)
                      ...    ........                                       ..++++|+|..++++. ..++.|.+.
T Consensus       152 ~~~----~~~vG~~P---------------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi  187 (381)
T COG3391         152 VTA----TIPVGNTP---------------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI  187 (381)
T ss_pred             EEE----EEecCCCc---------------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence            433    11111100                                       0166899999887754 558999999


Q ss_pred             eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC--CcEEEEEcCCCCcceee-eeccCCC
Q 024245          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP  254 (270)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d--g~i~vwd~~~~~~~~~~-~~~~~~~  254 (270)
                      |........ -..       +-..........+. +.|+   |....++...+  +.+...|..+ +..... ...-...
T Consensus       188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~  254 (381)
T COG3391         188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA  254 (381)
T ss_pred             eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence            977655443 110       00000111223344 7774   44233333333  6899999887 444443 2221114


Q ss_pred             eeEEEeecCCCce
Q 024245          255 GLECSMWRNPITM  267 (270)
Q Consensus       255 v~~~~~s~~g~~l  267 (270)
                      ...+.++|+|.++
T Consensus       255 ~~~v~~~p~g~~~  267 (381)
T COG3391         255 PRGVAVDPAGKAA  267 (381)
T ss_pred             CCceeECCCCCEE
Confidence            5668888888764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.38  E-value=0.049  Score=43.59  Aligned_cols=219  Identities=11%  Similarity=0.022  Sum_probs=90.5

Q ss_pred             CCCCCCccccccc---cc----ccEEEEEEeCCCCEEEEec------CCCcEEEEeCCCCceeEEEeecCC-CcceEEEE
Q 024245            4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA   69 (270)
Q Consensus         4 ~~~~~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~   69 (270)
                      .|..|+..++++.   +.    ..-..+-.-|+|++++|+-      .-|-+.+.|-++.+.......... ..--+.+-
T Consensus       108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw  187 (461)
T PF05694_consen  108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW  187 (461)
T ss_dssp             -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred             CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence            3555666666664   22    1122333346898888852      234688888887776666544221 13356777


Q ss_pred             EeeCCCCCEEEEEeC--------------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245           70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (270)
Q Consensus        70 ~~~~~~~~~l~s~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (270)
                      |.|  ..+.++|...                    ..++.+||+.+.+..+    ++.-.......+.+.+         
T Consensus       188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRf---------  252 (461)
T PF05694_consen  188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRF---------  252 (461)
T ss_dssp             EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE---------
T ss_pred             EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee----EEecCCCCCceEEEEe---------
Confidence            888  6677887643                    2478888888876544    3332222222222221         


Q ss_pred             CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeC-CCcc----eeeeeccCc-----CCCCCCc
Q 024245          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL-NTAE----RCTRLHQNS-----CGGSPNF  199 (270)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~-~~~~----~~~~~~~~~-----~~~~~~h  199 (270)
                                               ...|+..+-++.+.- .++|..|-- ..++    .+..+..+.     +.....-
T Consensus       253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred             -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence                                     122334444433332 244444432 3332    122222100     0000000


Q ss_pred             ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc------------------CCCeeEEEee
Q 024245          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------LEPGLECSMW  261 (270)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~v~~~~~s  261 (270)
                      .......++.+. .|.   |.+++.+++=.+|.|+.||+..+..+...-+..                  .+...-+..|
T Consensus       307 ~~~~P~LitDI~-iSl---DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS  382 (461)
T PF05694_consen  307 FGAVPPLITDIL-ISL---DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS  382 (461)
T ss_dssp             G-EE------EE-E-T---TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred             cccCCCceEeEE-Ecc---CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence            000134566776 776   456577788899999999999877665443211                  1233567888


Q ss_pred             cCCCce
Q 024245          262 RNPITM  267 (270)
Q Consensus       262 ~~g~~l  267 (270)
                      .||+.|
T Consensus       383 ~DGkRl  388 (461)
T PF05694_consen  383 LDGKRL  388 (461)
T ss_dssp             TTSSEE
T ss_pred             cCCeEE
Confidence            888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.35  E-value=0.031  Score=43.28  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCccceecc
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      +.+.|+|..+++.+..+...-    .-.+..+|  +++.+++++          ....|.+||..+-....    .+.-.
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~----EI~iP   86 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG----EIEIP   86 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE----EEEET
T ss_pred             ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccc----eEecC
Confidence            479999999998887776543    34466788  888887643          24478899988764322    11111


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  188 (270)
                      .....                                ....+.. ..++.||+++++.--+--.+|.|-|+..++.+.++
T Consensus        87 ~k~R~--------------------------------~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei  134 (342)
T PF06433_consen   87 PKPRA--------------------------------QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI  134 (342)
T ss_dssp             TS-B----------------------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred             Ccchh--------------------------------eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence            10000                                0000111 66899999988876666789999999999998888


Q ss_pred             ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      ..             .+ |+.   ..|.++  + -+.+-+.||.+.-..+...+++.
T Consensus       135 ~~-------------PG-C~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  135 DT-------------PG-CWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             EG-------------TS-EEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEE
T ss_pred             cC-------------CC-EEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEe
Confidence            73             22 222   224322  2 46677789998888888656654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.33  E-value=0.0039  Score=53.87  Aligned_cols=118  Identities=13%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             ceEEEeccCceeeeccCCCCC--eEecCC--------CCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCCCCCCccc
Q 024245          133 KDCYEREVGETVDTDSLCDSK--DDVPAE--------GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSS  201 (270)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~--~~~s~~--------~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~  201 (270)
                      ....|++.++.+..--.....  ..+.|+        .+.++   |-.+..+..||.|-.. .+..-.        .|.-
T Consensus       506 ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~--------~k~Y  574 (794)
T PF08553_consen  506 LYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQ--------SKQY  574 (794)
T ss_pred             eEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeecc--------cccc
Confidence            344566666665432222212  344443        22333   4457889999999643 111111        2211


Q ss_pred             CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .......+++ -..   +|  +||.|+.+|.||+||--. .+....+++-..+|.+|..+.||++|-
T Consensus       575 ~~~~~Fs~~a-Tt~---~G--~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  575 SSKNNFSCFA-TTE---DG--YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             ccCCCceEEE-ecC---Cc--eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence            1112222322 222   45  899999999999999432 455556677789999999999999874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.003  Score=52.49  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      |...|.--++...+++++.|+.-|.+++|+-..++... ++.......+..+..++  +..+++.|+..|.|.++-+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence            44556666677788999999999999999977655443 33211224466777888  7677888899999999988773

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.24  E-value=0.049  Score=40.67  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           24 VCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ++.+.+|++||.- .|..|.|-..+..  ..+...+....+ -.=..++|+|  |+.+|+.+...|+|++||+....
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccce
Confidence            5677899888765 4667888776653  233333322211 2257899999  99999999999999999998654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.20  E-value=0.089  Score=42.93  Aligned_cols=72  Identities=14%  Similarity=0.050  Sum_probs=45.6

Q ss_pred             cEEEEEEeCCCCEEEEe-cCC----CcEEEEeCCCCceeEEE-eecCCCcceEEEEEeeCCCCCEEEEEeCCC-------
Q 024245           20 SVTDVCFHQTKPILFAG-TTG----GELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG-------   86 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~-~~d----g~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-------   86 (270)
                      .+....++|+|+++|-+ +..    ..|++.|+++++.+... ....    -..+.|.+  +++.|+-...+.       
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccC
Confidence            44567899999987754 333    45999999999776532 2221    23499999  877766444332       


Q ss_pred             ----cEEEEEccCCc
Q 024245           87 ----TVKCWDIENGG   97 (270)
Q Consensus        87 ----~i~~wd~~~~~   97 (270)
                          .|..|++.+..
T Consensus       199 ~~~~~v~~~~~gt~~  213 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQ  213 (414)
T ss_dssp             GCCEEEEEEETTS-G
T ss_pred             CCCcEEEEEECCCCh
Confidence                25666665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0025  Score=52.31  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=63.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      +.|+|.-. ++| .+..+|.|-+..+. .+.+.++.        -+..   ....+++ |.|+   |. +||.|-.||+|
T Consensus        26 ~ewnP~~d-LiA-~~t~~gelli~R~n-~qRlwtip--------~p~~---~v~~sL~-W~~D---Gk-llaVg~kdG~I   86 (665)
T KOG4640|consen   26 IEWNPKMD-LIA-TRTEKGELLIHRLN-WQRLWTIP--------IPGE---NVTASLC-WRPD---GK-LLAVGFKDGTI   86 (665)
T ss_pred             EEEcCccc-hhh-eeccCCcEEEEEec-cceeEecc--------CCCC---ccceeee-ecCC---CC-EEEEEecCCeE
Confidence            66888876 333 56668999999888 67777777        2222   1224676 9995   55 99999999999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      ++.|+.+++............|.++-|++
T Consensus        87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   87 RLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEccCCCceeccccccccchheeeccc
Confidence            99999994443333333456788888864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.022  Score=46.28  Aligned_cols=86  Identities=12%  Similarity=0.049  Sum_probs=57.3

Q ss_pred             cCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      |-.|..|.-||+|-...  +...+        +|.-.....-.   ||.-.+ +|  ++++||.+|.|++||--. ....
T Consensus       400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~-sG--~IvvgS~~GdIRLYdri~-~~AK  464 (644)
T KOG2395|consen  400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTE-SG--YIVVGSLKGDIRLYDRIG-RRAK  464 (644)
T ss_pred             eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecC-Cc--eEEEeecCCcEEeehhhh-hhhh
Confidence            44578899999984332  22222        33221111111   233332 35  899999999999999733 5566


Q ss_pred             eeeeccCCCeeEEEeecCCCcee
Q 024245          246 TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..+++...+|..|..+.||+.|-
T Consensus       465 TAlPgLG~~I~hVdvtadGKwil  487 (644)
T KOG2395|consen  465 TALPGLGDAIKHVDVTADGKWIL  487 (644)
T ss_pred             hcccccCCceeeEEeeccCcEEE
Confidence            67888899999999999999874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.14  E-value=0.038  Score=43.67  Aligned_cols=202  Identities=13%  Similarity=0.079  Sum_probs=84.2

Q ss_pred             EEeCCCCEEE-EecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           25 CFHQTKPILF-AGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        25 ~~s~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      +|.++|+.|+ ++..||  .+.+-|+.+++..+.-.+..  .......++|  +++.++-......|+-.|+++.+... 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~-  116 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERV-  116 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEE-
Confidence            5677887554 444454  57777888887776554432  2233566677  66777655556688888888876422 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                       +..++..-.....+.......          .+.-++..+.-...+   ..  +.-..+.+.   ..-...|.-.|+.+
T Consensus       117 -vy~~p~~~~g~gt~v~n~d~t----------~~~g~e~~~~d~~~l---~~--~~~f~e~~~---a~p~~~i~~idl~t  177 (386)
T PF14583_consen  117 -VYEVPDDWKGYGTWVANSDCT----------KLVGIEISREDWKPL---TK--WKGFREFYE---ARPHCRIFTIDLKT  177 (386)
T ss_dssp             -EEE--TTEEEEEEEEE-TTSS----------EEEEEEEEGGG--------S--HHHHHHHHH---C---EEEEEEETTT
T ss_pred             -EEECCcccccccceeeCCCcc----------EEEEEEEeehhccCc---cc--cHHHHHHHh---hCCCceEEEEECCC
Confidence             444443333222222111100          000000000000000   00  000001111   11235567778888


Q ss_pred             cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC---CCc-EEEEEcCCCCcceeeeeccC--CCe
Q 024245          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGS-ILVWDIRNPGIPLTAMKVHL--EPG  255 (270)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~---dg~-i~vwd~~~~~~~~~~~~~~~--~~v  255 (270)
                      |+....+..             ...+.-+. |+|..+  . +|+-|-+   |.. -+||-+++.+.....+..+.  ..+
T Consensus       178 G~~~~v~~~-------------~~wlgH~~-fsP~dp--~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  178 GERKVVFED-------------TDWLGHVQ-FSPTDP--T-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV  240 (386)
T ss_dssp             --EEEEEEE-------------SS-EEEEE-EETTEE--E-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred             CceeEEEec-------------CccccCcc-cCCCCC--C-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence            887666652             33556676 999733  3 4554432   222 37787776565555554332  344


Q ss_pred             eEEEeecCCCce
Q 024245          256 LECSMWRNPITM  267 (270)
Q Consensus       256 ~~~~~s~~g~~l  267 (270)
                      ..=-|.|||..|
T Consensus       241 gHEfw~~DG~~i  252 (386)
T PF14583_consen  241 GHEFWVPDGSTI  252 (386)
T ss_dssp             EEEEE-TTSS-E
T ss_pred             ccccccCCCCEE
Confidence            555688888765

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.022  Score=50.10  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      .+..++.|+..|.+...|+... .-.-..+.....+|.+++|+.  +|..++.|-.+|.|.+||+..++..+  .+...+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~--~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILK--VITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCccee--eeeecC
Confidence            4557888999999999887653 111122222237899999999  99999999999999999999987655  344444


Q ss_pred             ccc
Q 024245          109 NSY  111 (270)
Q Consensus       109 ~~~  111 (270)
                      .+.
T Consensus       173 ap~  175 (1206)
T KOG2079|consen  173 APV  175 (1206)
T ss_pred             Ccc
Confidence            443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.07  Score=40.08  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             EEeCCCCEEEEecC-----CCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           25 CFHQTKPILFAGTT-----GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        25 ~~s~~~~~l~s~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .|||||++|+..-.     -|.|-|||...+ +.+.++..|.  -.-..+.|.+  ||..++.+..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G--iGpHev~lm~--DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG--IGPHEVTLMA--DGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC--cCcceeEEec--CCcEEEEeCC
Confidence            58999999887543     378999998754 5677787777  4478899999  9998886643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.11  Score=44.86  Aligned_cols=174  Identities=13%  Similarity=0.121  Sum_probs=95.3

Q ss_pred             Cccccccccccc-EEEEEEeCCCCEEEEecCCCc-----EEEEeCCCC------cee---EEEe--ecCCCcceEEEEEe
Q 024245            9 DPVAVLRGHRAS-VTDVCFHQTKPILFAGTTGGE-----LRIWDTVQH------RTV---SSSW--VHSAAHGIVSVATG   71 (270)
Q Consensus         9 ~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~-----i~vwd~~~~------~~~---~~~~--~~~~~~~v~~~~~~   71 (270)
                      +.++-++.+... |..+-...+..+|++-+.|+.     |+||+++.-      .++   +.+.  ....+.++.+++.+
T Consensus        55 ~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs  134 (933)
T KOG2114|consen   55 QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS  134 (933)
T ss_pred             eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE
Confidence            344566777666 444433334468888777754     899999642      233   1121  12223678999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEcc--CCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeec-
Q 024245           72 PSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTD-  147 (270)
Q Consensus        72 ~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  147 (270)
                      .  +-+.+|.|-.+|.|..+.-+  ..+-.+  ..........+..+........ .++++...+..+.+.... +... 
T Consensus       135 ~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr--~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~  209 (933)
T KOG2114|consen  135 E--DLKTIVCGFTNGLVICYKGDILRDRGSR--QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV  209 (933)
T ss_pred             c--cccEEEEEecCcEEEEEcCcchhccccc--eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee
Confidence            8  77889999999999888432  111111  1111112222222333222222 455556666777776333 3322 


Q ss_pred             cCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       148 ~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      +..+..    ..+++....+++ ++  +..+.+||.....+...+..
T Consensus       210 ld~~G~~lnCss~~~~t~qfIc-a~--~e~l~fY~sd~~~~cfaf~~  253 (933)
T KOG2114|consen  210 LDNNGISLNCSSFSDGTYQFIC-AG--SEFLYFYDSDGRGPCFAFEV  253 (933)
T ss_pred             eccCCccceeeecCCCCccEEE-ec--CceEEEEcCCCcceeeeecC
Confidence            333333    333333332443 44  36899999987666666663

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0032  Score=54.96  Aligned_cols=73  Identities=22%  Similarity=0.432  Sum_probs=55.8

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEEcc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd~~   94 (270)
                      .++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+.  .+..++-+.-.. ++..++++...|.  +|.+.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~--ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG--APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC--CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            5789999999999999999999999999999999998887766  334444333221 4456778777775  66653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.02  E-value=0.085  Score=39.49  Aligned_cols=183  Identities=11%  Similarity=0.022  Sum_probs=96.8

Q ss_pred             ccEEEEEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++.......... ---..++...  + ....-.=.++...+||.++-
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTT
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccc
Confidence            3456888877888877777665  799999999987766554321 1223455544  3 33334456788899999876


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i  176 (270)
                      +...    .++-....                                         --+..+++.++++-|+  ..+++
T Consensus       121 ~~~~----~~~y~~EG-----------------------------------------WGLt~dg~~Li~SDGS--~~L~~  153 (264)
T PF05096_consen  121 KKIG----TFPYPGEG-----------------------------------------WGLTSDGKRLIMSDGS--SRLYF  153 (264)
T ss_dssp             EEEE----EEE-SSS-------------------------------------------EEEECSSCEEEE-SS--SEEEE
T ss_pred             eEEE----EEecCCcc-----------------------------------------eEEEcCCCEEEEECCc--cceEE
Confidence            5432    22111100                                         0123566778775554  68999


Q ss_pred             EeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec------
Q 024245          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV------  250 (270)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------  250 (270)
                      +|..+-+...++.-..       ....-..+.-+. |.    +|. ..|=.=....|...|..+ ++....+..      
T Consensus       154 ~dP~~f~~~~~i~V~~-------~g~pv~~LNELE-~i----~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~  219 (264)
T PF05096_consen  154 LDPETFKEVRTIQVTD-------NGRPVSNLNELE-YI----NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPE  219 (264)
T ss_dssp             E-TTT-SEEEEEE-EE-------TTEE---EEEEE-EE----TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHH
T ss_pred             ECCcccceEEEEEEEE-------CCEECCCcEeEE-EE----cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhc
Confidence            9988777666665210       011112233333 33    232 333333344555566666 554443320      


Q ss_pred             ---------cCCCeeEEEeecCCCc
Q 024245          251 ---------HLEPGLECSMWRNPIT  266 (270)
Q Consensus       251 ---------~~~~v~~~~~s~~g~~  266 (270)
                               ..+-.+.|||.|+...
T Consensus       220 ~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  220 VGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             HTSTTST--TTS-EEEEEEETTTTE
T ss_pred             ccccccccccCCeeEeEeEeCCCCE
Confidence                     1245788999987654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.02  E-value=0.055  Score=44.23  Aligned_cols=86  Identities=9%  Similarity=-0.022  Sum_probs=43.5

Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      +|.+.+++.+  -- ..++|.|+.--+.+....++.             ...+-.+  |.     |. +|...+. +.|.
T Consensus        75 vw~~~n~yAv--~~-~~~~I~I~kn~~~~~~k~i~~-------------~~~~~~I--f~-----G~-LL~~~~~-~~i~  129 (443)
T PF04053_consen   75 VWSSRNRYAV--LE-SSSTIKIYKNFKNEVVKSIKL-------------PFSVEKI--FG-----GN-LLGVKSS-DFIC  129 (443)
T ss_dssp             EE-TSSEEEE--E--TTS-EEEEETTEE-TT------------------SS-EEEE--E------SS-SEEEEET-TEEE
T ss_pred             EEecCccEEE--EE-CCCeEEEEEcCccccceEEcC-------------CcccceE--Ec-----Cc-EEEEECC-CCEE
Confidence            4777555332  22 257899974333444444542             1123333  33     43 4555443 4899


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +||..+ ++.+..+...  +|..+.|+++|.++.
T Consensus       130 ~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen  130 FYDWET-GKLIRRIDVS--AVKYVIWSDDGELVA  160 (443)
T ss_dssp             EE-TTT---EEEEESS---E-EEEEE-TTSSEEE
T ss_pred             EEEhhH-cceeeEEecC--CCcEEEEECCCCEEE
Confidence            999999 8888888743  489999999998864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.98  E-value=0.0051  Score=32.61  Aligned_cols=30  Identities=13%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      ..|..++|+|  ..++|+.++.+|.|.++.++
T Consensus        12 ~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCP--TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECC--CCCEEEEEECCCeEEEEECC
Confidence            5699999999  88899999999999999994

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.97  E-value=0.097  Score=39.31  Aligned_cols=157  Identities=11%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             EEEEEEe-CCCCEEEEecCCCcEEEEeCCCCceeEEEee--cC-CCcceEEEEEeeCCCCCEEEEEeCC--------CcE
Q 024245           21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HS-AAHGIVSVATGPSIGLNKVISQGRD--------GTV   88 (270)
Q Consensus        21 v~~~~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~d--------~~i   88 (270)
                      ...+.+. +++.+++ +...+ +.++|..+++....+..  .. .....+.+++.|  +|++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence            6778888 5665544 44544 66669988865544443  11 225688999999  98877766543        345


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC--CceEEEeccCce------eeeccCCCC----CeEe
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGET------VDTDSLCDS----KDDV  156 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~----~~~~  156 (270)
                      ..++.. ++..     ...........+.+.......+.....  .+..+++.....      +...+....    .+++
T Consensus       118 ~~~~~~-~~~~-----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  118 YRIDPD-GKVT-----VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV  191 (246)
T ss_dssp             EEEETT-SEEE-----EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred             EEECCC-CeEE-----EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence            555555 3321     111111112223333322223333333  333445532221      112222222    1999


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      ..+|..+++ .- ..+.|.++|.. |+.+..+..
T Consensus       192 D~~G~l~va-~~-~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  192 DSDGNLWVA-DW-GGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             BTTS-EEEE-EE-TTTEEEEEETT-SCEEEEEE-
T ss_pred             cCCCCEEEE-Ec-CCCEEEEECCC-ccEEEEEcC
Confidence            999964443 22 35899999988 888888874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.88  E-value=0.12  Score=39.02  Aligned_cols=204  Identities=12%  Similarity=0.075  Sum_probs=118.1

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +.|-+..|.++.|+|+.+.|++......-.||=..+|+.++++....- .-...|++..  ++++.++--.++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEE
Confidence            345556699999999999888888888888887778999988764332 2356788887  7777777778889988887


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~  173 (270)
                      .......    .....     .+.+....                       ..-.|-+.++|.|....++++ - +..-
T Consensus       158 d~~t~~~----~~~~~-----~i~L~~~~-----------------------k~N~GfEGlA~d~~~~~l~~a-K-Er~P  203 (316)
T COG3204         158 DADTTVI----SAKVQ-----KIPLGTTN-----------------------KKNKGFEGLAWDPVDHRLFVA-K-ERNP  203 (316)
T ss_pred             cCCccEE----eccce-----EEeccccC-----------------------CCCcCceeeecCCCCceEEEE-E-ccCC
Confidence            7653211    11100     11110000                       001122227899998888863 3 3455


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccC---CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSK---GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~---~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      +.||....+........     ...+...   ....+..+. |++.  .+. +|+-+.+++.+.-.|..  +.++..+.-
T Consensus       204 ~~I~~~~~~~~~l~~~~-----~~~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~lsL  272 (316)
T COG3204         204 IGIFEVTQSPSSLSVHA-----SLDPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLSL  272 (316)
T ss_pred             cEEEEEecCCccccccc-----ccCcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEEe
Confidence            67766553221111110     0011111   112344555 7764  444 88888888888888877  444444432


Q ss_pred             cC---------CCeeEEEeecCCC
Q 024245          251 HL---------EPGLECSMWRNPI  265 (270)
Q Consensus       251 ~~---------~~v~~~~~s~~g~  265 (270)
                      +.         ...-.|+..++|.
T Consensus       273 ~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         273 TKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccCCCCCcccCCCcceeEECCCCC
Confidence            21         1234667776664

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.85  E-value=0.12  Score=38.39  Aligned_cols=66  Identities=11%  Similarity=0.033  Sum_probs=51.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-EEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      |.+++.|...|.+++-+.++|+....+....   .|.+ ....+  ++..+..++.|++....|.++..++.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcC--CCceEEEecCCCcEEEecccccceEE
Confidence            5678889999999999999998887776543   2322 23345  77899999999999999998876643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.70  E-value=0.16  Score=37.77  Aligned_cols=111  Identities=13%  Similarity=0.028  Sum_probs=76.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      ..+++.|+-.+.+.--|..+|+.+.+-...   .+|.+-+.--   |++++.|+..|.+.+.+.+++....  .+.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w--~f~~~~~   94 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIW--NFVILET   94 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEEE---CCEEEEEEccCcEEEEEecchhhee--eeeehhh
Confidence            458888999999999999999887654333   3355544443   3789999999999999999996543  1111111


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      -...                                        ....+++..+  .+|+.|++.+..|.++..++++.+
T Consensus        95 vk~~----------------------------------------a~~d~~~glI--ycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   95 VKVR----------------------------------------AQCDFDGGLI--YCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             hccc----------------------------------------eEEcCCCceE--EEecCCCcEEEecccccceEEecc
Confidence            0000                                        1134566533  478899999999999999998876


Q ss_pred             c
Q 024245          190 Q  190 (270)
Q Consensus       190 ~  190 (270)
                      .
T Consensus       133 c  133 (354)
T KOG4649|consen  133 C  133 (354)
T ss_pred             c
Confidence            3

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.65  E-value=0.0034  Score=53.62  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             eEecCCCCeEEEEe--cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          154 DDVPAEGPKYMAVA--GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       154 ~~~s~~~~~~~~~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      ..|+|..+.+.+++  ....|+|.||- .+|++-.-...             .-.+.+++ |+|..    ..|+.|=+-|
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------------P~hatSLC-WHpe~----~vLa~gwe~g   81 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------------PVHATSLC-WHPEE----FVLAQGWEMG   81 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------------ceehhhhc-cChHH----HHHhhccccc
Confidence            45888887554432  22458888883 45665444431             12345576 99952    2888999999


Q ss_pred             cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+.+|...+ .+.-.....|..+|..+.||++|..|-
T Consensus        82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~  117 (1416)
T KOG3617|consen   82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLM  117 (1416)
T ss_pred             eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEE
Confidence            999999887 555555567999999999999997653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.59  E-value=0.35  Score=40.47  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccC----CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~----~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      .+|.+.-.|+.+|+.+.+....      .+...    .......+. .     .+. +|+.++.||.|+.+|.++ ++.+
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~------~~~~~~~~g~~~~~~~~~-~-----~g~-~v~~g~~dG~l~ald~~t-G~~l  429 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREG------TIRDSWNIGFPHWGGSLA-T-----AGN-LVFAGAADGYFRAFDATT-GKEL  429 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCC------ccccccccCCcccCcceE-e-----cCC-eEEEECCCCeEEEEECCC-Ccee
Confidence            3688999999999988777631      00000    000001111 1     223 788889999999999999 8877


Q ss_pred             eeeec
Q 024245          246 TAMKV  250 (270)
Q Consensus       246 ~~~~~  250 (270)
                      ..++-
T Consensus       430 W~~~~  434 (488)
T cd00216         430 WKFRT  434 (488)
T ss_pred             eEEEC
Confidence            77764

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.56  E-value=0.29  Score=39.08  Aligned_cols=93  Identities=8%  Similarity=0.085  Sum_probs=47.5

Q ss_pred             CCCCeEEEEecCCCce--EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC----
Q 024245          158 AEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----  231 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg----  231 (270)
                      +++..++..+- .+|-  |.+++...+. ...+..       |     .-.+..+..|.+.  .+. +++++..++    
T Consensus       245 ~~~~~~l~~s~-~~G~~hly~~~~~~~~-~~~lT~-------G-----~~~V~~i~~~d~~--~~~-iyf~a~~~~p~~r  307 (353)
T PF00930_consen  245 PDGNEFLWISE-RDGYRHLYLYDLDGGK-PRQLTS-------G-----DWEVTSILGWDED--NNR-IYFTANGDNPGER  307 (353)
T ss_dssp             TTSSEEEEEEE-TTSSEEEEEEETTSSE-EEESS--------S-----SS-EEEEEEEECT--SSE-EEEEESSGGTTSB
T ss_pred             CCCCEEEEEEE-cCCCcEEEEEcccccc-eecccc-------C-----ceeecccceEcCC--CCE-EEEEecCCCCCce
Confidence            66666665444 5665  4455655444 334442       1     2233333337764  333 555555432    


Q ss_pred             cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .|+.-++.. +..+..+......-..+.|||+|+++-
T Consensus       308 ~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  308 HLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             EEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             EEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEE
Confidence            455555552 344555553333335899999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.54  E-value=0.069  Score=40.11  Aligned_cols=100  Identities=18%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC----
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE----  229 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~----  229 (270)
                      ++|+|.-+.-++.+---.....++|....+...++.....    .|      .--.= .|+|   ||+ +|.+.-.    
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~----RH------fyGHG-vfs~---dG~-~LYATEndfd~  137 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG----RH------FYGHG-VFSP---DGR-LLYATENDFDP  137 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC----ce------eeccc-ccCC---CCc-EEEeecCCCCC
Confidence            8888888776665544344578899988876666542110    11      11111 2998   576 5555433    


Q ss_pred             -CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          230 -DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       230 -dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       -|.|-|||.+...+.+.++..|.-....+.|.+||+.|.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEE
Confidence             378999999987788889999988889999999999874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.49  E-value=0.29  Score=38.42  Aligned_cols=180  Identities=9%  Similarity=0.117  Sum_probs=98.5

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC-----CCEEEEEeC----------CCcEEEEEccCCccCCCCcc
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL  104 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~  104 (270)
                      ..|++.|..+.+.+..+..... ..+.+++.....+     ..+|+.|..          .|.|.++++.........+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            3688999888888877766554 4566665544322     356775543          28899999988410000011


Q ss_pred             cee--cccceEEEEeeccCCccceecCCCCceEEEeccCc-eeeeccC-CCCC-eEecCCCCeEEEEecCCCceEEEEeC
Q 024245          105 TIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSL-CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDL  179 (270)
Q Consensus       105 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~  179 (270)
                      .+.  ........+...  ......+.+....++++...+ ....... .... ++....++++++  |.....+.++..
T Consensus        81 ~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v--gD~~~sv~~~~~  156 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV--GDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE--EESSSSEEEEEE
T ss_pred             EEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE--EEcccCEEEEEE
Confidence            111  112223333322  333566667778888888777 3332222 2222 555555666654  444566777744


Q ss_pred             CC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          180 NT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       180 ~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      .. ...+..+..          +.....++++. |-++   +. .++++..+|.+.++...
T Consensus       157 ~~~~~~l~~va~----------d~~~~~v~~~~-~l~d---~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEENNKLILVAR----------DYQPRWVTAAE-FLVD---ED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTTE-EEEEEE----------ESS-BEEEEEE-EE-S---SS-EEEEEETTSEEEEEEE-
T ss_pred             EccCCEEEEEEe----------cCCCccEEEEE-EecC---Cc-EEEEEcCCCeEEEEEEC
Confidence            43 222333321          11244577776 7654   33 89999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.48  E-value=0.16  Score=41.02  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-------------------------------------------EE
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-------------------------------------------SS   56 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------------------------------~~   56 (270)
                      .|+.++|+++...|+.|...|.|.||.....+...                                           .+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999988899999999999999764321110                                           11


Q ss_pred             eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           57 WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        57 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      ...  .++|++++.+.  - .+++.|.++|.+.|.|++....+
T Consensus        83 ~~~--~g~vtal~~S~--i-GFvaigy~~G~l~viD~RGPavI  120 (395)
T PF08596_consen   83 DAK--QGPVTALKNSD--I-GFVAIGYESGSLVVIDLRGPAVI  120 (395)
T ss_dssp             -----S-SEEEEEE-B--T-SEEEEEETTSEEEEEETTTTEEE
T ss_pred             ecc--CCcEeEEecCC--C-cEEEEEecCCcEEEEECCCCeEE
Confidence            122  36799999986  4 79999999999999999876543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.43  E-value=0.57  Score=41.00  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----------Cce-e--EEEe------ecCCCcceEEEEEeeCC-CC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT-V--SSSW------VHSAAHGIVSVATGPSI-GL   76 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~-~--~~~~------~~~~~~~v~~~~~~~~~-~~   76 (270)
                      -.-.|..+.++|+|.+||..|..| |.|-.+..          ++. +  +++.      .......|..+.|+|.. ++
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            345789999999999999988876 55555432          111 1  1111      11112568999999942 25


Q ss_pred             CEEEEEeCCCcEEEEEccCCc
Q 024245           77 NKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        77 ~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .+|+.-..|+++|+||+....
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            789999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.37  E-value=0.05  Score=43.86  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--C------------
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--G------------   75 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~------------   75 (270)
                      ....|......+.++..+|++++.|+...-|.|.++|+.++..++.+++....    .+.|....  .            
T Consensus       299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCC
Confidence            44556666778999999999999999888899999999999888888776542    22222100  0            


Q ss_pred             ----CCE-EEEEeCCCcEEEEEccCCccC
Q 024245           76 ----LNK-VISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        76 ----~~~-l~s~~~d~~i~~wd~~~~~~~   99 (270)
                          ..+ ++-+-.-|.|.||.++++..+
T Consensus       375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  375 SSRFALFLVIYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             CCcceEEEEEEeccCCeEEEEecCCCCEE
Confidence                112 235667899999999988653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.27  E-value=0.56  Score=39.30  Aligned_cols=68  Identities=21%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCC----cceE--EEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIV--SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +..++.++.++.|.-.|..+++.+..+......    ..+.  .+...   ++..++.++.++.|.-+|.++++...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEee
Confidence            446777888899999999999888776543210    0010  11111   22678888889999999999987654

The alignment model contains an 8-bladed beta-propeller.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.26  E-value=0.035  Score=28.55  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             ccEEEEEEeCC-C--CEEEEecCCCcEEEEeCCC
Q 024245           19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ   49 (270)
Q Consensus        19 ~~v~~~~~s~~-~--~~l~s~~~dg~i~vwd~~~   49 (270)
                      ++|+++.|+|+ +  .+|+-+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999984 4  5888887889999999985

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.24  E-value=0.43  Score=40.73  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      .-+.-+.-++..+.-+....+.|||.+.+.....-.. ...+.|..+.|....+++.+++.+..+.|.+|--
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            3344444444444444455799999998765443332 1126799999987768999999999999999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.19  E-value=0.42  Score=37.03  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .+.+..+..+++|+++++++.-..+.-||-....-...-....  .+|.+|.|.|  ++.+.+. ...|.|+.=+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~~-~~Gg~~~~s~  213 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWML-ARGGQIQFSD  213 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEEE-ETTTEEEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEEE-eCCcEEEEcc
Confidence            4678888889999999888776666678754322222222233  6699999999  8666554 4788888776

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.15  E-value=0.73  Score=39.48  Aligned_cols=59  Identities=10%  Similarity=-0.043  Sum_probs=37.6

Q ss_pred             ccEEEEEEeCCCCEEEEec------CCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ..+...+++|+|+.++...      .|.  .|.+++.. +.......+    .....-.|+|  +|..|++...
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g----~~~t~PsWsp--DG~~lw~v~d  416 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG----HSLTRPSWSL--DADAVWVVVD  416 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC----CCCCCceECC--CCCceEEEec
Confidence            4678889999999776654      243  45555542 333222222    2278889999  9888877654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.93  E-value=0.034  Score=48.37  Aligned_cols=71  Identities=10%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      .....|++-+.+| +||.|+.+|.||+||--..+....+++-+  ++|.+|..+.  ||++|++.+ +..|.+++..
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~--DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTA--DGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecC--CCcEEEEee-cceEEEEEEe
Confidence            4456777777777 89999999999999954333333455555  7799999999  999988665 4577888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.64  Score=36.17  Aligned_cols=210  Identities=14%  Similarity=0.097  Sum_probs=98.3

Q ss_pred             EEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCc
Q 024245           25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (270)
Q Consensus        25 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  103 (270)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+...   +.+.++....  .+..|+++..  -+.+++.+++.... .+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t-~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---GGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKIT-LL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---CCcccceeec--CCCeEEEEcc--ccEEEeccCCceeE-Ee
Confidence            4566555 5666666788888888755433 33322   2244554444  4455555433  25666665444311 01


Q ss_pred             ccee-c---ccceEEEEeeccCC-----c---cceecCCCCceEEEecc-Cceeee--c-cCCCCCeEecCCCCeEEEEe
Q 024245          104 LTIK-T---NSYHFCKLSLVKEP-----Y---ANAKQANEPKDCYEREV-GETVDT--D-SLCDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus       104 ~~~~-~---~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~s~~~~~~~~~~  167 (270)
                      .... .   .......+...+.-     .   ...........+|.+.. +...+.  . +...+.++||||++.+++ +
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~-a  180 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV-A  180 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE-E
Confidence            1111 0   11111111111100     0   00000111123455552 222221  1 223333999999998776 4


Q ss_pred             cCCCceEEEEeCCC--cceee----eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEcCC
Q 024245          168 GEQLSEVEIWDLNT--AERCT----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRN  240 (270)
Q Consensus       168 ~~~d~~i~iwd~~~--~~~~~----~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~~~  240 (270)
                      =+..+.|.-|++..  +....    .+..       .......+.+     ..   .+|. +.+++..+| .|.+|+.. 
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-------~~~G~PDG~~-----vD---adG~-lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFD-------EEPGLPDGMA-----VD---ADGN-LWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEcc-------CCCCCCCceE-----Ee---CCCC-EEEecccCCceEEEECCC-
Confidence            44567888887752  11111    1110       0001111111     22   2465 332443443 89999977 


Q ss_pred             CCcceeeeeccCCCeeEEEeec
Q 024245          241 PGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                       ++++..+......+++++|--
T Consensus       244 -G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             -CcEEEEEECCCCCCccceEeC
Confidence             677777777667778888754

>PHA02713 hypothetical protein; Provisional

Probab=95.83  E-value=0.61  Score=39.77  Aligned_cols=21  Identities=0%  Similarity=-0.035  Sum_probs=16.5

Q ss_pred             CCceEEEEecCCC--cEEEEEcCC
Q 024245          219 QGFVNVLAGYEDG--SILVWDIRN  240 (270)
Q Consensus       219 ~g~~~l~~~~~dg--~i~vwd~~~  240 (270)
                      +|+ +.++|+.||  .+..||..+
T Consensus       512 ~~~-iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        512 DNT-IMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCE-EEEEeeecceeehhhcCccc
Confidence            455 788888888  788888887

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.68  E-value=0.68  Score=35.37  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             CCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           29 TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .++.|+.|..+| |.++++.. .........    ..|..+...|  +-+.|++-+ |+.+.++++..-.
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~   67 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLE   67 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhc
Confidence            567899999998 99999833 333333322    3399999999  666666554 5999999997654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.46  Score=34.18  Aligned_cols=33  Identities=12%  Similarity=0.009  Sum_probs=21.0

Q ss_pred             eEEEEEeeCCCCCEEEEEeCC--CcEEEEEccCCccCC
Q 024245           65 IVSVATGPSIGLNKVISQGRD--GTVKCWDIENGGLSS  100 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~  100 (270)
                      -..+...   ++.++.+.+.-  ..|++||+++++...
T Consensus        48 TQGL~~~---~g~i~esTG~yg~S~ir~~~L~~gq~~~   82 (262)
T COG3823          48 TQGLEYL---DGHILESTGLYGFSKIRVSDLTTGQEIF   82 (262)
T ss_pred             hcceeee---CCEEEEeccccccceeEEEeccCceEEE
Confidence            3445544   34666666653  379999999887543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.39  E-value=0.08  Score=27.26  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=25.4

Q ss_pred             ceEEEEEeeCCCC--CEEEEEeCCCcEEEEEccCC
Q 024245           64 GIVSVATGPSIGL--NKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        64 ~v~~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .|.++.|+|. ++  ++|+.+-..+.|.++|++++
T Consensus         2 AvR~~kFsP~-~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPE-PGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCC-CCcccEEEEEccCCeEEEEEcccC
Confidence            4899999973 23  57787778889999999964

It contains a characteristic DLL sequence motif.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.20  E-value=1.4  Score=36.01  Aligned_cols=32  Identities=22%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             eEEEEEeeCCCCCEEE-EEeCCC----cEEEEEccCCcc
Q 024245           65 IVSVATGPSIGLNKVI-SQGRDG----TVKCWDIENGGL   98 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~-s~~~d~----~i~~wd~~~~~~   98 (270)
                      +....++|  ++++++ +.+..|    .++++|+++++.
T Consensus       126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~  162 (414)
T PF02897_consen  126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKF  162 (414)
T ss_dssp             EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred             eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence            34567888  989887 334444    599999999854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.12  E-value=0.087  Score=42.30  Aligned_cols=165  Identities=12%  Similarity=0.110  Sum_probs=85.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee-EEEeec-CCC--cceE-EEEEeeCCCCCEEEEEe
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVH-SAA--HGIV-SVATGPSIGLNKVISQG   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~~--~~v~-~~~~~~~~~~~~l~s~~   83 (270)
                      +.++.+..--+.|..+-..|||+.++.-+. .++.|+++.+.... +.+... .++  ..|. ++..-.  .|.-++.++
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~  287 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH  287 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence            344445555677888899999997776655 57899998764321 112111 100  1122 222223  566788899


Q ss_pred             CCCcEEEE-EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccC-----------cee-ee-ccC
Q 024245           84 RDGTVKCW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-----------ETV-DT-DSL  149 (270)
Q Consensus        84 ~d~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~-~~~  149 (270)
                      .||-|.-| |++.+....         -.+...++....+............++.+...           +.+ .. ..+
T Consensus       288 ~dG~vsQWFdvr~~~~p~---------l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~  358 (733)
T COG4590         288 EDGLVSQWFDVRRDGQPH---------LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ  358 (733)
T ss_pred             CCCceeeeeeeecCCCCc---------ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence            99999887 555443211         11122222222222222222222222222211           111 11 112


Q ss_pred             CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245          150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (270)
Q Consensus       150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  188 (270)
                      +...+++||.+.+++.   .+.|.|+++.+.+..+-.++
T Consensus       359 ~~~~~~~Sp~~~~Ll~---e~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         359 APQLVAMSPNQAYLLS---EDQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             CcceeeeCcccchhee---ecCCceEEEEecCCCCCccH
Confidence            2222899999998874   34588999988765543333

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.76  E-value=2.3  Score=36.12  Aligned_cols=66  Identities=14%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceE----------EEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV----------SVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      +..|+.++.++.|.-.|..+|+.+..+..... ..+.          .+++.    +..++.++.|+.|.-.|.++++..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence            44677778888999999999998877654321 1111          12222    256777888999999999998865


Q ss_pred             C
Q 024245          100 S  100 (270)
Q Consensus       100 ~  100 (270)
                      .
T Consensus       144 W  144 (527)
T TIGR03075       144 W  144 (527)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.74  E-value=0.3  Score=41.69  Aligned_cols=90  Identities=11%  Similarity=0.045  Sum_probs=50.1

Q ss_pred             eEecCCCCeEEEEec------CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          154 DDVPAEGPKYMAVAG------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      .+++|+|+.++++..      .....|.+++.. +.. ..+..       +.      ....-. |+|+   |+ .|++.
T Consensus       355 paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-------g~------~~t~Ps-WspD---G~-~lw~v  414 (591)
T PRK13616        355 AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-------GH------SLTRPS-WSLD---AD-AVWVV  414 (591)
T ss_pred             ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-------CC------CCCCce-ECCC---CC-ceEEE
Confidence            789999998776552      222356665652 222 33321       11      133444 9985   33 34443


Q ss_pred             c------------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          228 Y------------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       228 ~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .            ..+.+.+.+++. ++...   .....|..++|||||..|
T Consensus       415 ~dg~~~~~v~~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~Ri  462 (591)
T PRK13616        415 VDGNTVVRVIRDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRA  462 (591)
T ss_pred             ecCcceEEEeccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEE
Confidence            2            233455555554 33322   234579999999999876

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.73  E-value=0.69  Score=38.69  Aligned_cols=78  Identities=9%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             ccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCC-c--ceEEEEEeeCCCCCEEEEEeC
Q 024245           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        17 h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .-+.|..++|.|-    -..|.+..-...|.||.+..     .+.+.....+-.+ -  --..+.|+|  ....|+.-..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence            3356999999994    22344445567899999852     2222222111100 1  124678999  7566665444


Q ss_pred             CCcEEEEEccCC
Q 024245           85 DGTVKCWDIENG   96 (270)
Q Consensus        85 d~~i~~wd~~~~   96 (270)
                      ...=.++++...
T Consensus       133 ~dvSV~~sV~~d  144 (671)
T PF15390_consen  133 RDVSVLPSVHCD  144 (671)
T ss_pred             CceeEeeeeeeC
Confidence            433345555433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.67  E-value=0.39  Score=35.36  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             EeCCCCEEEEecCCCcEEEEeCCCCceeEEE-------ee-----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +..++.+|++-+.+|.+++||+.+++.+..-       ..     ......|..+.++.  +|.-+++-+ +|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEecc
Confidence            3346788999999999999999987654321       11     01225588888887  877777655 577888887


Q ss_pred             cCCcc
Q 024245           94 ENGGL   98 (270)
Q Consensus        94 ~~~~~   98 (270)
                      .-+..
T Consensus        95 ~L~~W   99 (219)
T PF07569_consen   95 DLGCW   99 (219)
T ss_pred             cccee
Confidence            76543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.40  E-value=2.9  Score=35.85  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=40.2

Q ss_pred             CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCc
Q 024245           29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (270)
Q Consensus        29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~   97 (270)
                      ++.+.++|+.|      .++..||...++....-....... =.+++..   +|...+.|+.||     ++..||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence            34677888888      357788887776554222222111 1122222   457778888886     57788888776


Q ss_pred             cC
Q 024245           98 LS   99 (270)
Q Consensus        98 ~~   99 (270)
                      ..
T Consensus       408 W~  409 (571)
T KOG4441|consen  408 WT  409 (571)
T ss_pred             cc
Confidence            53

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.24  E-value=1.6  Score=32.19  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEe--CCCcce-----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd--~~~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      ++|+.+.+.+.. .-+.+-+|.-||  ..+|..     +..++..   ....+.. ..+.+     ..-   +|. +.++
T Consensus       163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~~-PDGm~-----ID~---eG~-L~Va  228 (310)
T KOG4499|consen  163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---QPFESLE-PDGMT-----IDT---EGN-LYVA  228 (310)
T ss_pred             ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC---CCcCCCC-CCcce-----Ecc---CCc-EEEE
Confidence            788888877765 455677887787  555542     2233210   0001100 11111     221   455 6777


Q ss_pred             ecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      .-..|+|...|..+ ++.+.+++-....|++++|--
T Consensus       229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecC
Confidence            77788999999999 899999998889999999953

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.04  E-value=0.21  Score=36.28  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=42.6

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEccC
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIEN   95 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~   95 (270)
                      ++.+..++..||.|+.|++.-++.+.....|.. .++.....+.  .+..+..+  |.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence            455888999999999999998888777666653 2233333333  33555555  6666666666654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.99  E-value=0.4  Score=24.36  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=28.2

Q ss_pred             CCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEee
Q 024245          219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMW  261 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s  261 (270)
                      +++.++++...++.|.++|..+ .+.+..+.. ......++|+
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC-CCCCceEEeC
Confidence            3443566666788999999988 777777765 3445566653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.97  E-value=0.69  Score=37.52  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC-----------CCCCce
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-----------KSQGFV  222 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~-----------~~~g~~  222 (270)
                      ++.+|++. +.++ ...-|.|.|+|+..+..++.++        |..+...+.+.... -...           .....+
T Consensus       313 i~~sP~~~-laA~-tDslGRV~LiD~~~~~vvrmWK--------GYRdAqc~wi~~~~-~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  313 ICLSPSGR-LAAV-TDSLGRVLLIDVARGIVVRMWK--------GYRDAQCGWIEVPE-EGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             EEECCCCC-EEEE-EcCCCcEEEEECCCChhhhhhc--------cCccceEEEEEeec-ccccccccccccCCCCcceEE
Confidence            78889976 4443 4557999999999999998888        55443333332211 1000           001223


Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      +++-.-.-|.|.||.+++ +..+..+.
T Consensus       382 LvIyaprRg~lEvW~~~~-g~Rv~a~~  407 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQ-GPRVAAFN  407 (415)
T ss_pred             EEEEeccCCeEEEEecCC-CCEEEEEE
Confidence            455566789999999998 66665554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.92  E-value=0.36  Score=24.52  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      |++++++++ ...+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~-~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVT-NSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEE-eCCCCEEEEEECCCCeEEEEEE
Confidence            567777764 4457899999999888887776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.17  E-value=2.8  Score=31.55  Aligned_cols=75  Identities=9%  Similarity=0.189  Sum_probs=47.2

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------eeEEEe--ec-CCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSW--VH-SAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~--~~-~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      +..-++++..++.++++--+++.+.+.++....      ....+.  .. .++..+..++|.|  .++.|+.+-+.....
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~  142 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKR  142 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET--TTTEEEEEEESSSEE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC--CCCEEEEEeCCCChh
Confidence            456778887778777776678999999884321      112222  11 2225689999999  777888787777778


Q ss_pred             EEEccC
Q 024245           90 CWDIEN   95 (270)
Q Consensus        90 ~wd~~~   95 (270)
                      +|.+..
T Consensus       143 l~~~~~  148 (248)
T PF06977_consen  143 LYEVNG  148 (248)
T ss_dssp             EEEEES
T ss_pred             hEEEcc
Confidence            887765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=0.35  Score=39.71  Aligned_cols=68  Identities=12%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      -.|.+-..+| ++|.||.+|.|++||--..+....+++-.  .+|..|..+.  +|.+|+..+ +..+.+-++.
T Consensus       433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvta--dGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTA--DGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeec--cCcEEEEec-ccEEEEEEEe
Confidence            3444444455 89999999999999974334444566666  6699999999  988887555 4567777654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.80  E-value=0.76  Score=33.52  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=28.7

Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccC-CCeeEEEeecCC
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPGLECSMWRNP  264 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~s~~g  264 (270)
                      +..+++.||.|+.|++.- .+.+.....|. .++..+..+..+
T Consensus       116 ~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd  157 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD  157 (238)
T ss_pred             eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC
Confidence            888999999999999886 66666666666 455444444433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.78  E-value=4.7  Score=33.02  Aligned_cols=154  Identities=11%  Similarity=-0.040  Sum_probs=74.6

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      +.+-|....+.|++. ..|.+.=|-++..  ...-.+.... +++|.++.|++  |.+.|+.--.+.+|.+++....+..
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d-~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDD-KGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecC-CCceeEEEecc--CcceEEEEecCceEEEEecCCCchh
Confidence            445555444444333 3344666655432  2222333222 26799999999  9888999999999999988443322


Q ss_pred             CCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEE
Q 024245          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE  175 (270)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~  175 (270)
                      .......+.....+..+.+..+ ....+........+.+...+........+..    ..|.++-...+++++-..+++.
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln  180 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN  180 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence            1112222222332333333333 2233333334444433322221111222222    5677777666665553334443


Q ss_pred             EEeCC
Q 024245          176 IWDLN  180 (270)
Q Consensus       176 iwd~~  180 (270)
                      =+.++
T Consensus       181 pf~~~  185 (657)
T KOG2377|consen  181 PFHFR  185 (657)
T ss_pred             cEEEe
Confidence            34333

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.71  E-value=3.1  Score=30.78  Aligned_cols=47  Identities=11%  Similarity=-0.021  Sum_probs=32.3

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                      +++..+|.. ++++ -..++|.-.|..+|+.+.+++.            ....+++++ |--
T Consensus       217 m~ID~eG~L-~Va~-~ng~~V~~~dp~tGK~L~eikl------------Pt~qitscc-FgG  263 (310)
T KOG4499|consen  217 MTIDTEGNL-YVAT-FNGGTVQKVDPTTGKILLEIKL------------PTPQITSCC-FGG  263 (310)
T ss_pred             ceEccCCcE-EEEE-ecCcEEEEECCCCCcEEEEEEc------------CCCceEEEE-ecC
Confidence            555556654 4333 3468999999999999999984            234566666 763

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.59  E-value=7.3  Score=34.79  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCC----------CcceEEEEEeeCCCCCEEEEEeC----------CCcEE
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQGR----------DGTVK   89 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~----------d~~i~   89 (270)
                      +..++.++.|+.|.-.|.++|+....+.....          ...-..+.-.|.-.++.++.++.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            34788888999999999999998876642210          00000111112112356666643          68899


Q ss_pred             EEEccCCccCC
Q 024245           90 CWDIENGGLSS  100 (270)
Q Consensus        90 ~wd~~~~~~~~  100 (270)
                      -+|.++++...
T Consensus       340 A~Da~TGkl~W  350 (764)
T TIGR03074       340 AFDVNTGALVW  350 (764)
T ss_pred             EEECCCCcEee
Confidence            99999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.27  E-value=3.1  Score=31.50  Aligned_cols=94  Identities=9%  Similarity=-0.017  Sum_probs=49.8

Q ss_pred             eEecCCCCeEEEEec-CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                      .+++++++.+.+++. .....+.++.  .+.....+..       +.      ...... |+++   +. ..+....+..
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~   88 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG   88 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence            779999987776551 2234444444  3333333321       11      334444 8884   44 4444455556


Q ss_pred             EEEEE-cCCCCcceeeeecc--CCCeeEEEeecCCCce
Q 024245          233 ILVWD-IRNPGIPLTAMKVH--LEPGLECSMWRNPITM  267 (270)
Q Consensus       233 i~vwd-~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l  267 (270)
                      .+++. ...+..........  ...|..+++||||..+
T Consensus        89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~Rv  126 (253)
T PF10647_consen   89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRV  126 (253)
T ss_pred             eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEE
Confidence            66663 33312222222211  1289999999999875

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.21  E-value=3.8  Score=33.38  Aligned_cols=71  Identities=10%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             EEEEEEeCCCCEEEEec--------------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE-E
Q 024245           21 VTDVCFHQTKPILFAGT--------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-V   79 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l   79 (270)
                      -..+-|.|..+.++|..                    .-.++.+||+.+.+.++++...........|.|....+..+ +
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            35666777777777753                    34689999999999999998654223356777754213333 3


Q ss_pred             EEEeCCCcEEEE
Q 024245           80 ISQGRDGTVKCW   91 (270)
Q Consensus        80 ~s~~~d~~i~~w   91 (270)
                      +.+-...+|..|
T Consensus       263 vg~aLss~i~~~  274 (461)
T PF05694_consen  263 VGCALSSSIWRF  274 (461)
T ss_dssp             EEEE--EEEEEE
T ss_pred             EEEeccceEEEE
Confidence            333334444444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.99  E-value=6.9  Score=33.18  Aligned_cols=163  Identities=10%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             ccccEEEEEEeCCCCEEEEec--CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd   92 (270)
                      --.+|..++|......+.+.-  ..|.++.=|   .+.+..|      ..|..+.|.|..  +.-.|++.-..+.|.||.
T Consensus        18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc------ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            345788999974333444432  223332221   1122222      338999999831  122455556677899999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC-CCCeEecCCCCeEEEEecCCC
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      +........-..     ....|.+.                            ..+.. .++..|+|...-+.+.++ .|
T Consensus        89 L~~s~~e~~K~l-----~sQtcEi~----------------------------e~~pvLpQGCVWHPk~~iL~VLT~-~d  134 (671)
T PF15390_consen   89 LCPSTTERNKLL-----MSQTCEIR----------------------------EPFPVLPQGCVWHPKKAILTVLTA-RD  134 (671)
T ss_pred             eccCccccccce-----eeeeeecc----------------------------CCcccCCCcccccCCCceEEEEec-Cc
Confidence            863321110000     00111110                            00111 111568898876665555 34


Q ss_pred             ceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          172 SEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       172 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      -. .+++++...  ...-++             ..+.+.+.+ |.++   |+.++++.+..=.-++||-..
T Consensus       135 vS-V~~sV~~d~srVkaDi~-------------~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  135 VS-VLPSVHCDSSRVKADIK-------------TSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ee-EeeeeeeCCceEEEecc-------------CCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCch
Confidence            33 356665433  222233             345666766 9984   553555556666788998553

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.95  E-value=7.5  Score=33.48  Aligned_cols=68  Identities=18%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEEEccCC
Q 024245           29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENG   96 (270)
Q Consensus        29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~   96 (270)
                      .+.+++.|+.+      ..+..+|..+++.......... ..-.++++..  + ...++|+.|      .++..||..++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~--~-~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN--G-KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC--C-EEEEEccccCCCcccceEEEecCCCC
Confidence            45577778777      3688889887754443322221 2244555554  3 777888888      35778888877


Q ss_pred             ccCC
Q 024245           97 GLSS  100 (270)
Q Consensus        97 ~~~~  100 (270)
                      +...
T Consensus       360 ~W~~  363 (571)
T KOG4441|consen  360 QWTP  363 (571)
T ss_pred             ceec
Confidence            6543

>PHA02713 hypothetical protein; Provisional

Probab=91.77  E-value=7.8  Score=33.30  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCc
Q 024245           29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (270)
Q Consensus        29 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~   97 (270)
                      ++.+.+.|+.+      ..+..||..++.....-......... +++..   ++...+.|+.++     ++..||..+++
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            45566666653      34677887766433211111110111 22222   446667777654     47788887765


Q ss_pred             c
Q 024245           98 L   98 (270)
Q Consensus        98 ~   98 (270)
                      .
T Consensus       379 W  379 (557)
T PHA02713        379 W  379 (557)
T ss_pred             E
Confidence            4

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.63  E-value=4.7  Score=30.53  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (270)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (270)
                      .+.++. |....-...+.|..  ++.++-+.+.-|  .|+.+|+.+++...  ...++.. .....+.            
T Consensus        35 vv~~yp-Hd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~-~FgEGit------------   96 (264)
T PF05096_consen   35 VVETYP-HDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPR-YFGEGIT------------   96 (264)
T ss_dssp             EEEEEE---TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT---EEEEE------------
T ss_pred             EEEECC-CCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcc-ccceeEE------------
Confidence            344444 44446678899977  767777888766  79999999987543  1111111 1111111            


Q ss_pred             CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (270)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (270)
                                                ..  +..++..+= .++...+||..+-+.+.++.-             .+.-+.
T Consensus        97 --------------------------~~--~d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y-------------~~EGWG  134 (264)
T PF05096_consen   97 --------------------------IL--GDKLYQLTW-KEGTGFVYDPNTLKKIGTFPY-------------PGEGWG  134 (264)
T ss_dssp             --------------------------EE--TTEEEEEES-SSSEEEEEETTTTEEEEEEE--------------SSS--E
T ss_pred             --------------------------EE--CCEEEEEEe-cCCeEEEEccccceEEEEEec-------------CCcceE
Confidence                                      11  234444454 579999999999988888872             223344


Q ss_pred             eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      ++ .     |+. .|+.......++++|..+ .+....+.
T Consensus       135 Lt-~-----dg~-~Li~SDGS~~L~~~dP~~-f~~~~~i~  166 (264)
T PF05096_consen  135 LT-S-----DGK-RLIMSDGSSRLYFLDPET-FKEVRTIQ  166 (264)
T ss_dssp             EE-E-----CSS-CEEEE-SSSEEEEE-TTT--SEEEEEE
T ss_pred             EE-c-----CCC-EEEEECCccceEEECCcc-cceEEEEE
Confidence            43 2     444 455555566899999876 44444443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=91.57  E-value=5.6  Score=31.28  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=46.4

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      ..++|++++-- ++. |+.+. .+.|.+|++...+ ....-..+.. ..+.++....    ++++.|...+.+.++.++.
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVFK----NYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEET----TEEEEEESSSSEEEEEEET
T ss_pred             ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-EEEEEEeccc----cEEEEEEcccCEEEEEEEc
Confidence            46788888866 444 44443 3689999998877 4443333322 3466666654    7999999888888886654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.50  E-value=6.8  Score=32.13  Aligned_cols=29  Identities=14%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCC
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV   48 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~   48 (270)
                      +.|-++.|+.+. .|+.-..||.++++|+.
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            678888888755 45566789999999987

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.44  E-value=2.4  Score=34.52  Aligned_cols=77  Identities=8%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE--eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      -.-+++|.++.||+|.+.||.--.|++|.+++....+....+  ........|....|+.  + .-++-.+..| +.+|-
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~e~y~  138 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-IEFYQ  138 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-eEEEE
Confidence            345679999999999999999999999999998544332221  1222225589999987  5 4555555444 56665


Q ss_pred             ccC
Q 024245           93 IEN   95 (270)
Q Consensus        93 ~~~   95 (270)
                      ...
T Consensus       139 v~p  141 (657)
T KOG2377|consen  139 VLP  141 (657)
T ss_pred             Ech
Confidence            543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.38  E-value=7.7  Score=35.67  Aligned_cols=50  Identities=10%  Similarity=0.112  Sum_probs=33.4

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                      ++|+|.|+.+++  |...|++.-|... .+....+.++        .......+.+++ |--
T Consensus       204 v~WSprGKQl~i--G~nnGt~vQy~P~-leik~~ip~P--------p~~e~yrvl~v~-Wl~  253 (1405)
T KOG3630|consen  204 VLWSPRGKQLFI--GRNNGTEVQYEPS-LEIKSEIPEP--------PVEENYRVLSVT-WLS  253 (1405)
T ss_pred             EEeccccceeeE--ecCCCeEEEeecc-cceeecccCC--------CcCCCcceeEEE-Eec
Confidence            899999998875  7778998888654 5555555521        122245677776 764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.05  E-value=6  Score=30.63  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCC------CC-ceeEEEeecC---CCcceEEEEEeeCC----------CCCEE
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV   79 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l   79 (270)
                      .-+.|+|+|.+.+-++....+...+||..      .. ..+-.+....   .+...+.+.|+...          ....+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45899999999888887778899999986      12 2232333111   11457788887510          11236


Q ss_pred             EEEeCCCcEEEEEcc
Q 024245           80 ISQGRDGTVKCWDIE   94 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~   94 (270)
                      +.+++||+|.-|...
T Consensus       104 if~tEdGTisaW~p~  118 (336)
T TIGR03118       104 LFVTEDGTLSGWAPA  118 (336)
T ss_pred             EEEeCCceEEeecCc
Confidence            778899999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.85  E-value=0.38  Score=42.23  Aligned_cols=66  Identities=21%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEE-----------EEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV-----------ATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      +-|-++..++..+-.+++|++-++.+... ..+.+|.  ..+..+           ..+|  ||..|++++.||.++.|.
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs--~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHS--QRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHHH-HHHHhcC--CCcccHHHHhhchhhheeeCC--CCcEEEEeecCCccceee
Confidence            33444667888888889998877664322 3333444  223332           3678  899999999999999887


Q ss_pred             cc
Q 024245           93 IE   94 (270)
Q Consensus        93 ~~   94 (270)
                      +.
T Consensus       264 iy  265 (1283)
T KOG1916|consen  264 IY  265 (1283)
T ss_pred             ee
Confidence            64

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.65  E-value=3.4  Score=35.63  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC-----CC-
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP-  241 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~-----~~-  241 (270)
                      .+....+.|||.+.+...+.-.         .  ...+.+..+. |... ++|+ .+++.+....|.+|--.     +. 
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst-~d~q-siLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTST-PDGQ-SILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeec-CCCC-EEEEEEcCcEEEEEEccchhhhcCC
Confidence            4446789999999887443322         1  1245677777 7755 3677 67777778888887531     11 


Q ss_pred             --Ccceeee--eccC-CCeeEEEeecCCCcee
Q 024245          242 --GIPLTAM--KVHL-EPGLECSMWRNPITMS  268 (270)
Q Consensus       242 --~~~~~~~--~~~~-~~v~~~~~s~~g~~ls  268 (270)
                        ..++..+  ..|+ .+|.+..|-+||..+.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV  144 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV  144 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEE
Confidence              1233333  2344 6899999999998874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.64  E-value=12  Score=33.28  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      ....+..+. |+|.+.++. .|+.=..|+++++||+..+..+..++.
T Consensus       145 ~~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  145 SSLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            345677777 999875566 788888999999999988666666654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.23  E-value=1.6  Score=37.33  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=40.4

Q ss_pred             CCCCEEEEecCCCcEEEEeCCC----CceeEEEee---------------c-----CCCcceEEEEEee--CCCCCEEEE
Q 024245           28 QTKPILFAGTTGGELRIWDTVQ----HRTVSSSWV---------------H-----SAAHGIVSVATGP--SIGLNKVIS   81 (270)
Q Consensus        28 ~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~---------------~-----~~~~~v~~~~~~~--~~~~~~l~s   81 (270)
                      ++...++.+..||.+.......    +........               .     .....+..+++..  ..+..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556777788888888877654    211111100               0     0012234444433  224578999


Q ss_pred             EeCCCcEEEEEccCCccC
Q 024245           82 QGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~   99 (270)
                      .+.|+++|+||+.++.++
T Consensus       236 l~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             EETTSEEEEEETTTTCEE
T ss_pred             EeCCCeEEEEECCCCeEE
Confidence            999999999999999873

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.20  E-value=0.92  Score=38.67  Aligned_cols=38  Identities=16%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             ccEEEEEEeC----CCCEEEEecCCCcEEEEeCCCCceeEEE
Q 024245           19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSS   56 (270)
Q Consensus        19 ~~v~~~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~   56 (270)
                      ..+..++.+.    +..+|++.+.|+.+|+||+.+++++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455566665    6679999999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.09  E-value=3.6  Score=29.02  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=25.3

Q ss_pred             ceEEEEEeeC----CCCCEEEEEeCCCcEEEEEccC
Q 024245           64 GIVSVATGPS----IGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        64 ~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .|.+++|+|.    +.+..|++...++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            5899999992    2235788899999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.95  E-value=4.1  Score=33.83  Aligned_cols=45  Identities=16%  Similarity=0.029  Sum_probs=37.2

Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++|+++..|.|++||--. ......+++....|..+..+.+|+.|-
T Consensus       575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~il  619 (776)
T COG5167         575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHIL  619 (776)
T ss_pred             eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEE
Confidence            999999999999999654 444556777788999999999998763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.90  E-value=8  Score=30.27  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=42.6

Q ss_pred             cEEEEEEeCCCCEEEEecC-----------CCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC
Q 024245           20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG   86 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~-----------dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~   86 (270)
                      .-+.+...|+|.+-++...           -|  .||.+. .+..++.+..+-  ..-+.|+|+|  +++.|+.+.. .+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~~l~~~~~--~~~NGla~Sp--Dg~tly~aDT~~~  185 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVVRLLDDDL--TIPNGLAFSP--DGKTLYVADTPAN  185 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEEEeecCcE--EecCceEECC--CCCEEEEEeCCCC
Confidence            4456777788876555333           13  344444 455555554433  3357899999  9877765544 47


Q ss_pred             cEEEEEccC
Q 024245           87 TVKCWDIEN   95 (270)
Q Consensus        87 ~i~~wd~~~   95 (270)
                      .|.-|++..
T Consensus       186 ~i~r~~~d~  194 (307)
T COG3386         186 RIHRYDLDP  194 (307)
T ss_pred             eEEEEecCc
Confidence            777777753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.72  E-value=12  Score=31.95  Aligned_cols=57  Identities=12%  Similarity=0.050  Sum_probs=38.9

Q ss_pred             cEEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCCCC---EEEEEeCCCcEEEEEccCCccC
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIGLN---KVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      +|.--|+++|+....++...+.       ....-+.+..  +|+   .++.+.++|.+.+.|-++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~--~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK--DGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc--CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            6777899999988887653321       1111222222  555   6779999999999999999764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.60  E-value=7.7  Score=29.61  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe------------ecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------------VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .|..+...++-+.|++-+ |+.+.++++..-.....-.            .......+...+......+...+.....+.
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            499999999777666554 5999999997643332100            000012344444111113344444445558


Q ss_pred             EEEEEccCC
Q 024245           88 VKCWDIENG   96 (270)
Q Consensus        88 i~~wd~~~~   96 (270)
                      |.+|.....
T Consensus       116 i~i~~~~~~  124 (275)
T PF00780_consen  116 ILIYEWNDP  124 (275)
T ss_pred             EEEEEEECC
Confidence            999988764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.44  E-value=9.3  Score=30.32  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEe--ecCCCcceEEEEEee
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSW--VHSAAHGIVSVATGP   72 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~--~~~~~~~v~~~~~~~   72 (270)
                      .-+.|+|.|+|+++++ ...|.|++++ ..+..   +..+.  ....+.....++++|
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence            4578999999988776 5599999999 44443   22221  112235689999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.27  E-value=8.5  Score=29.67  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCC-CeeEEEeecCCCcee
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PGLECSMWRNPITMS  268 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~ls  268 (270)
                      +-..+..|+-+.+-|+.++..|...-.-..+ .+.++..+++..++.
T Consensus       183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v  229 (370)
T COG5276         183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV  229 (370)
T ss_pred             eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence            6666778999999999987777654443334 788888888877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.97  E-value=1.2  Score=32.87  Aligned_cols=45  Identities=20%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             EEEEecCCCcEEEEEcCCCCcceee------ee-------ccCCCeeEEEeecCCCce
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTA------MK-------VHLEPGLECSMWRNPITM  267 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~s~~g~~l  267 (270)
                      +|++-..+|.+++||+.+....+..      +.       .....|..+.++.+|.-|
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi   81 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI   81 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Confidence            8999999999999999983222111      11       244677888888877654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.58  E-value=1.9  Score=21.40  Aligned_cols=29  Identities=7%  Similarity=0.217  Sum_probs=18.8

Q ss_pred             ccccEEEEEEeCCCCEEEEec-CC--CcEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGT-TG--GELRIW   45 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~-~d--g~i~vw   45 (270)
                      ....-....|+|||+.|+-.+ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445677899999998766544 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK10115 protease 2; Provisional

Probab=88.54  E-value=17  Score=32.22  Aligned_cols=72  Identities=7%  Similarity=-0.103  Sum_probs=45.8

Q ss_pred             ccEEEEEEeCCCCEEEEec-----CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-C-----Cc
Q 024245           19 ASVTDVCFHQTKPILFAGT-----TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-D-----GT   87 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----~~   87 (270)
                      -.+..+.++|+|++|+.+.     +...|++-|+.+++.+.......    -..++|.+  +++.|+-... +     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~~~~~w~~--D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----EPSFVWAN--DSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----ceEEEEee--CCCEEEEEEecCCCCCCCE
Confidence            3477789999999877643     23468889998776432221111    14699999  8776654432 2     35


Q ss_pred             EEEEEccCC
Q 024245           88 VKCWDIENG   96 (270)
Q Consensus        88 i~~wd~~~~   96 (270)
                      |..+++.++
T Consensus       201 v~~h~lgt~  209 (686)
T PRK10115        201 VWRHTIGTP  209 (686)
T ss_pred             EEEEECCCC
Confidence            667777776

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=88.54  E-value=10  Score=29.61  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=53.7

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      -|+++...++|.+|+|.-.-..|.+.|-++|+.+..+.+... .-.+....|+-.++.+++-....++.|.++|-.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            377888888999999999999999999999999988876521 111122234333364555566788899999974

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.43  E-value=0.2  Score=40.73  Aligned_cols=96  Identities=15%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++|.-+++.+++ .....+.+.+||+.+.. .++++.       +-     ....++..|++..+    .++.|...|.+
T Consensus        80 m~wDkegdvlav-lAek~~piylwd~n~ey-tqqLE~-------gg-----~~s~sll~wsKg~~----el~ig~~~gn~  141 (615)
T KOG2247|consen   80 MAWDKEGDVLAV-LAEKTGPIYLWDVNSEY-TQQLES-------GG-----TSSKSLLAWSKGTP----ELVIGNNAGNI  141 (615)
T ss_pred             hhhccccchhhh-hhhcCCCeeechhhhhh-HHHHhc-------cC-----cchHHHHhhccCCc----cccccccccce
Confidence            345555665554 35567899999998543 233332       10     01122223887543    88889999999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+++..+ .+.+...-.|...+++++|.+.+..+.
T Consensus       142 viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  142 VIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             EEEeccc-hhhhhhhcccccceeEEEecccceeee
Confidence            9999988 454444444888999999999887764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.38  E-value=2.3  Score=38.76  Aligned_cols=61  Identities=18%  Similarity=0.109  Sum_probs=43.9

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe---ecCCCcceEEEEEeeCCCCCEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      -...++|++|+|.|..++.|-..|++.-|... .+....+.   ... ...|.+|.|..  ...++++
T Consensus       197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e-~yrvl~v~Wl~--t~eflvv  260 (1405)
T KOG3630|consen  197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE-NYRVLSVTWLS--TQEFLVV  260 (1405)
T ss_pred             cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC-CcceeEEEEec--ceeEEEE
Confidence            34678999999999999999999999988754 33333332   122 26699999988  6455553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.36  E-value=12  Score=30.21  Aligned_cols=55  Identities=13%  Similarity=-0.072  Sum_probs=27.6

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      ..++|+.+.++-......|+--|+.+.+....+....  ..+-...|....++..++
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEE
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc--ccccccceeeCCCccEEE
Confidence            4455666665444444567777888877666665554  445456665422444443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.12  E-value=14  Score=30.73  Aligned_cols=56  Identities=9%  Similarity=0.079  Sum_probs=37.6

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce--eEEEe---ecCCCcceEEEEEee
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP   72 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~   72 (270)
                      .-..-+.|+|.|+|++|++--..|.|++++..++..  +..+.   ....+.....|+++|
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            345678999999998887765469999998655432  21111   111236689999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.72  E-value=14  Score=30.34  Aligned_cols=65  Identities=14%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCC--CCCEEEEEeCCCcEEEEEcc
Q 024245           30 KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~~   94 (270)
                      ...++.||.+|.++||+...+.  ....+-...-+.+|..++.-++.  .....++.-.-+.+.+|.+.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence            3589999999999999986533  11111111222678888764420  12233334556788888884

>smart00564 PQQ beta-propeller repeat

Probab=87.70  E-value=1.8  Score=20.42  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=20.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEE
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSS   56 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~   56 (270)
                      .++.++.+|.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6777888999999999888876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.21  E-value=20  Score=31.53  Aligned_cols=167  Identities=9%  Similarity=0.027  Sum_probs=78.3

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +..+.-....+-.|.|+.+.. |+.-..||++.||++- |+.+...    ....  ..|..+.+..  +|=.+++.  +|
T Consensus        76 L~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~--~~I~ec~~f~--~GVavlt~--~g  147 (829)
T KOG2280|consen   76 LGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQM--SDIVECRFFH--NGVAVLTV--SG  147 (829)
T ss_pred             hHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhccccccccccc--CceeEEEEec--CceEEEec--CC
Confidence            333333345888999998765 5556889999999986 3333331    1111  2255555555  44444443  33


Q ss_pred             cEE-EEEccCCccCCCCccceecccceEEEEeeccCCccc---eecC-CCCceEEEeccCceeeecc-CCCCC---eEec
Q 024245           87 TVK-CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQA-NEPKDCYEREVGETVDTDS-LCDSK---DDVP  157 (270)
Q Consensus        87 ~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~s  157 (270)
                      .+. +-+.+......  ....+.......++++.......   .... .-...+............+ ..+..   +.+|
T Consensus       148 ~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS  225 (829)
T KOG2280|consen  148 QVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVS  225 (829)
T ss_pred             cEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEc
Confidence            333 33333322111  11112222221222222211111   0000 0000111111111111111 12233   8899


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      |+.+++.+.+.  .|.|.+-+....+....+.
T Consensus       226 ~n~~~laLyt~--~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  226 PNRRFLALYTE--TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCcceEEEEec--CCcEEEEecchhhhhhccC
Confidence            99988877654  5888888888777666665

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.96  E-value=7.2  Score=26.11  Aligned_cols=72  Identities=22%  Similarity=0.323  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCC--------ceeEEEeecCCCcceEEEEEeeC---CCCCEEEEEeCCCcEEE
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKC   90 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~d~~i~~   90 (270)
                      ..-.|......|+.++.-|.|.|++....        ..+..+...   ..|++|+--+.   .+...|+.|+.. .+..
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~lla   77 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLA   77 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEE
Confidence            34456666668888889999999987643        344555544   44777765543   234567776654 6889


Q ss_pred             EEccCCc
Q 024245           91 WDIENGG   97 (270)
Q Consensus        91 wd~~~~~   97 (270)
                      ||+....
T Consensus        78 YDV~~N~   84 (136)
T PF14781_consen   78 YDVENNS   84 (136)
T ss_pred             EEcccCc
Confidence            9998774

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.88  E-value=5.9  Score=34.69  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=55.6

Q ss_pred             cccccccccccEEEEEEe--CCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCC-CCC---EEEEE
Q 024245           10 PVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSI-GLN---KVISQ   82 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~---~l~s~   82 (270)
                      |...++ -...+++++++  ...++||+++....|.||-.... +.......+.....|-+|+|.+.. ++.   .|+++
T Consensus       156 P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~  234 (717)
T PF08728_consen  156 PFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT  234 (717)
T ss_pred             CCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence            444444 34589999999  78889999999888988866442 111111111222559999998832 112   67788


Q ss_pred             eCCCcEEEEEc
Q 024245           83 GRDGTVKCWDI   93 (270)
Q Consensus        83 ~~d~~i~~wd~   93 (270)
                      +-.|.+.+|++
T Consensus       235 dI~G~v~~~~I  245 (717)
T PF08728_consen  235 DISGEVWTFKI  245 (717)
T ss_pred             eccCcEEEEEE
Confidence            99999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.62  E-value=22  Score=31.33  Aligned_cols=51  Identities=14%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .|+|+++. |+.+..+.-..  ..+..+.|+.  + ..|+....+|++++|++-...
T Consensus        65 ~I~If~~s-G~lL~~~~w~~--~~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKH--GELIGMGWSD--D-EELICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eEEEEecc-ccchHHHHhcC--CCeeeecccC--C-ceEEEEeccceEEEeecchhh
Confidence            47777765 55555443333  3588999998  6 778888999999999986543

>PHA03098 kelch-like protein; Provisional

Probab=86.38  E-value=20  Score=30.64  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             CCCEEEEecCCC------cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCc
Q 024245           29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (270)
Q Consensus        29 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~   97 (270)
                      ++.+++.|+.++      .+..||..+.+....-......... +++. -  ++...+.|+.+     ..+..||..+++
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-F--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            455666666542      5778888776553321111111112 2222 2  44667777765     357788888776


Q ss_pred             cCC
Q 024245           98 LSS  100 (270)
Q Consensus        98 ~~~  100 (270)
                      ...
T Consensus       370 W~~  372 (534)
T PHA03098        370 WRE  372 (534)
T ss_pred             eee
Confidence            543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.38  E-value=7.5  Score=28.40  Aligned_cols=56  Identities=20%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             eEecCCC-CeEEEEecCCCceEEEEeCCC--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          154 DDVPAEG-PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       154 ~~~s~~~-~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                      .++...| +.++++++  ...|.+|++..  .+.+.+|..             -+.+..+. ++..   |. ||+|--+
T Consensus        21 ~~~c~~g~d~Lfva~~--g~~Vev~~l~~~~~~~~~~F~T-------------v~~V~~l~-y~~~---GD-YlvTlE~   79 (215)
T PF14761_consen   21 TAVCCGGPDALFVAAS--GCKVEVYDLEQEECPLLCTFST-------------VGRVLQLV-YSEA---GD-YLVTLEE   79 (215)
T ss_pred             ceeeccCCceEEEEcC--CCEEEEEEcccCCCceeEEEcc-------------hhheeEEE-eccc---cc-eEEEEEe
Confidence            3444445 55666444  37899999883  345666662             35677887 8874   44 8888743

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=85.58  E-value=4.6  Score=24.71  Aligned_cols=30  Identities=0%  Similarity=0.071  Sum_probs=22.9

Q ss_pred             CCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       151 ~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      ...+.++|++++++++ ....+.|++|....
T Consensus        56 aNGI~~s~~~k~lyVa-~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   56 ANGIAISPDKKYLYVA-SSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEcCCCCEEEEE-eccCCeEEEEEecC
Confidence            3338899999988875 45579999998653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PRK10115 protease 2; Provisional

Probab=85.48  E-value=16  Score=32.39  Aligned_cols=96  Identities=5%  Similarity=-0.025  Sum_probs=50.1

Q ss_pred             eEecCCCCeEEEEe---cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 DDVPAEGPKYMAVA---GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 ~~~s~~~~~~~~~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                      ..++|+|++++++.   |++...|++.|+.+++.+....              ......+. |.++   ++.++++...+
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------------~~~~~~~~-w~~D---~~~~~y~~~~~  193 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------------DNVEPSFV-WAND---SWTFYYVRKHP  193 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------------cCcceEEE-EeeC---CCEEEEEEecC
Confidence            56899998665532   3333458889998776432221              11113355 9885   33244444322


Q ss_pred             -----CcEEEEEcCCCC-cceeeeeccCCCee-EEEeecCCCce
Q 024245          231 -----GSILVWDIRNPG-IPLTAMKVHLEPGL-ECSMWRNPITM  267 (270)
Q Consensus       231 -----g~i~vwd~~~~~-~~~~~~~~~~~~v~-~~~~s~~g~~l  267 (270)
                           ..|+.+++.++. +....+........ .+..+.|++++
T Consensus       194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l  237 (686)
T PRK10115        194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYV  237 (686)
T ss_pred             CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEE
Confidence                 368888988842 22333332222222 33334466654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.12  E-value=3.2  Score=34.43  Aligned_cols=59  Identities=12%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      .++|.||..|.|++||--.-+....+++-+  ..|..+..+.  +|.++++.+.. .+.+-|+.
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta--~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTA--NGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeec--CCcEEEEeecc-eEEEEecc
Confidence            389999999999999965444445566666  5599999998  98988766654 67777765

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.00  E-value=3.6  Score=35.94  Aligned_cols=69  Identities=9%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ...++++.-+|.|.-+++++.||+|++|+....+..+.....   .+-..+.|..    .-|++...|..+.-|.-
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheeec
Confidence            356788888999999999999999999998765443333222   2234555654    34666666766666643

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.53  E-value=3.6  Score=20.43  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .+..++.||.|+-.|.++ ++.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~T-G~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKT-GKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTT-TSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCC-CCEEEeeeC
Confidence            456669999999999999 888877763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.96  E-value=14  Score=26.99  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             CEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           31 PILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ..|+.+...+.|.+|++...  +....|..-   +.|..+.++.  .|++|+|--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEe
Confidence            34444455678999999833  444455433   6699999999  8999998644

>PHA02790 Kelch-like protein; Provisional

Probab=83.76  E-value=25  Score=29.62  Aligned_cols=67  Identities=9%  Similarity=0.006  Sum_probs=35.3

Q ss_pred             CCCEEEEecCCC-----cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--CcEEEEEccCCccC
Q 024245           29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGGLS   99 (270)
Q Consensus        29 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~   99 (270)
                      ++.+++.|+.++     .+..||..+++....-......... +++ .-  ++...+.|+.+  ..+..||..+++..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA--NNKLYVVGGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE--CCEEEEECCcCCCCceEEEECCCCeEE
Confidence            455667777543     4677888776544322211111111 222 23  54666677653  35788888766543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.28  E-value=31  Score=30.23  Aligned_cols=85  Identities=11%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             CCCccccccc-ccccEEEEEEeCC---CCEEEEecCCCc-EEEEeCCCC-----------ceeE--EEeecCCCcceEEE
Q 024245            7 PPDPVAVLRG-HRASVTDVCFHQT---KPILFAGTTGGE-LRIWDTVQH-----------RTVS--SSWVHSAAHGIVSV   68 (270)
Q Consensus         7 ~~~~~~~~~~-h~~~v~~~~~s~~---~~~l~s~~~dg~-i~vwd~~~~-----------~~~~--~~~~~~~~~~v~~~   68 (270)
                      .|+++..+.- .+..|.||..-..   .++.+.|-.++. -++-.+..+           +...  .+.. .  +.|.++
T Consensus        59 TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~--~kvv~I  135 (670)
T PF10395_consen   59 TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-D--DKVVGI  135 (670)
T ss_pred             CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-c--cceEEE
Confidence            3477766653 4667888887542   234445534433 333333222           1111  2222 2  569999


Q ss_pred             EEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           69 ATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        69 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .|.+  +++.+++...+|.|.+||...+
T Consensus       136 k~~~--~~~~I~vvl~nG~i~~~d~~~~  161 (670)
T PF10395_consen  136 KFSS--DGKIIYVVLENGSIQIYDFSEN  161 (670)
T ss_pred             EEec--CCCEEEEEEcCCcEEEEecccc
Confidence            9998  8899999999999999999444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=82.97  E-value=32  Score=30.16  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=28.7

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ   49 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~   49 (270)
                      .+.|-.+.|.++++.++..-.+|.|.+||...
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~  160 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE  160 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence            57889999999999999999999999999943

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=82.66  E-value=3.5  Score=18.88  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             ceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           64 GIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .|.+++..+    .+++.+...+.+|+|.
T Consensus         3 ~i~aia~g~----~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGD----SWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccC----CEEEEEeCCCeEEecC
Confidence            478888876    7898888889999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.02  E-value=42  Score=30.27  Aligned_cols=70  Identities=13%  Similarity=0.055  Sum_probs=47.6

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc------ceEEEEEee--------------CCCCCEEEEEeCCCcEE
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSVATGP--------------SIGLNKVISQGRDGTVK   89 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~v~~~~~~~--------------~~~~~~l~s~~~d~~i~   89 (270)
                      +..|+.++.++.|.-.|..+|+.+..+.......      ....+.+..              ...+.+++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            4577778888999999999999888776433211      012233321              11235788888899999


Q ss_pred             EEEccCCccC
Q 024245           90 CWDIENGGLS   99 (270)
Q Consensus        90 ~wd~~~~~~~   99 (270)
                      -.|.++++..
T Consensus       274 ALDA~TGk~~  283 (764)
T TIGR03074       274 ALDADTGKLC  283 (764)
T ss_pred             EEECCCCCEE
Confidence            9999988754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=80.23  E-value=29  Score=27.99  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             eeeeeecCCCCCCCceEEEEecC------------------CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYE------------------DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~------------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ...+. |.|   ||.+|+..|+.                  .|.|.-+|... ++ +..+..--...+.++|+|+|.++
T Consensus       126 ~~~l~-~gp---DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg-~~-~e~~a~G~rnp~Gl~~d~~G~l~  198 (367)
T TIGR02604       126 LNSLA-WGP---DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG-GK-LRVVAHGFQNPYGHSVDSWGDVF  198 (367)
T ss_pred             ccCce-ECC---CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC-Ce-EEEEecCcCCCccceECCCCCEE
Confidence            44565 888   56656655632                  13455555543 22 33333223456789999998764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=80.09  E-value=54  Score=30.90  Aligned_cols=27  Identities=4%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~  180 (270)
                      +.|--+|..+-++++..+++|++|-..
T Consensus      1187 ~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             eeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            667778887777778889999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
           D    L+GH  SV D+ F  +  +L + +    +++WD      + +  +H   H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENG 96
           +  P+   + ++S  RD T+K W+++ G
Sbjct: 199 SIMPN--GDHIVSASRDKTIKMWEVQTG 224

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
           P   L GH   ++ + F+ T  +L + +  G LRIW      + +  + HS      S+ 
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 293
Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
           +   +G +KVIS   DG+V+ W ++   L
Sbjct: 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
           P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H    
Sbjct: 260 PYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYIL----SGHTDRI 313
Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
            +T       + IS   D T++ WD+ENG L
Sbjct: 314 YSTIYDHERKRCISASXDTTIRIWDLENGEL 344

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
           P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H    
Sbjct: 260 PYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYIL----SGHTDRI 313
Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
            +T       + IS   D T++ WD+ENG L
Sbjct: 314 YSTIYDHERKRCISASMDTTIRIWDLENGEL 344

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 11  VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
           V +L+GH   +  + +  +   L +G+    +RIWD    RT   S   S   G+ +VA 
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTLSIEDGVTTVAV 214
Query: 71  GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
            P  G  K I+ G  D  V+ WD E G L
Sbjct: 215 SPGDG--KYIAAGSLDRAVRVWDSETGFL 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.26
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.23
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.19
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.12
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.09
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.01
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.91
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.89
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.87
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.83
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.64
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.52
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.52
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.47
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.36
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.35
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.32
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.23
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.23
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.02
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.95
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.82
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.79
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.77
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.74
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.63
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.57
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.44
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.29
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.27
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.91
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.73
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.49
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.13
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.53
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.42
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.03
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.37
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.41
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.19
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.6
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.51
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.28
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.27
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.94
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.54
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	87.41
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	87.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.17
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.6
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.2
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.46
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	83.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	83.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.85
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.07
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.74
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.09

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.6e-38  Score=242.08  Aligned_cols=236  Identities=13%  Similarity=0.160  Sum_probs=193.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..++|++|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|.  .+|.+++|+|  ++++|++++.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeC--CCCEEEEECCCCEE
Confidence            5678899999999999999999999999999999999999999999999888  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||+.+++..    ..+..+......+.+...... ......+.+.+|++..+......+.+|..    ++|+|++..+
T Consensus        80 ~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           80 RVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EEEETTTCCEE----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             EEEECCCCcEE----EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            99999998653    356666666655555443332 23344567788999988777777888877    8999955445


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      ++ +|+.|++|++||++++.....+..       +|    ...+..+. |.|.. ++. +|++|+.|++|++||+++ ++
T Consensus       156 l~-sgs~D~~v~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~~-~~~-~l~s~s~D~~i~iWd~~~-~~  219 (304)
T 2ynn_A          156 FA-SGCLDRTVKVWSLGQSTPNFTLTT-------GQ----ERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-KS  219 (304)
T ss_dssp             EE-EEETTSEEEEEETTCSSCSEEEEC-------CC----TTCEEEEE-ECCST-TCC-EEEEEETTSEEEEEETTT-TE
T ss_pred             EE-EEeCCCeEEEEECCCCCccceecc-------CC----cCcEEEEE-EEEcC-CCC-EEEEEcCCCeEEEEeCCC-Cc
Confidence            54 677899999999998887776663       33    23455666 77742 345 999999999999999999 89


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++..+.+|...|.+++|+|++.+|.
T Consensus       220 ~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          220 CVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             cceeeCCCCCCEEEEEECCCCCEEE
Confidence            9999999999999999999997653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-37  Score=240.28  Aligned_cols=224  Identities=12%  Similarity=0.117  Sum_probs=174.1

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE----eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..|+..|++++|+|++ .|++|+.||+|+|||+.+++.+..+    .+|.  +.|.+++|+|  ++++|++++.|++|++
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~sp--dg~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLS--SGTQAVSGSKDICIKV  153 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECC--CCCEEEEEeCCCeEEE
Confidence            3467889999999985 6889999999999999988765443    3566  6799999999  9999999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccC-CCCC----eEecCCCCeE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKY  163 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~  163 (270)
                      ||+++++...    .+.++......+.+.....  .......+.+.+||++.++....... .+..    ++|+|++..+
T Consensus       154 wd~~~~~~~~----~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  229 (344)
T 4gqb_B          154 WDLAQQVVLS----SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV  229 (344)
T ss_dssp             EETTTTEEEE----EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred             EECCCCcEEE----EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence            9999987643    6666666655555544332  23344467788999998876654332 2222    8899987777


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      ++ +|+.|++|+|||+++++++.++.        +|.    ..+.+++ |+|+   +..+|++|+.|++|+|||+++ ++
T Consensus       230 l~-sg~~dg~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-fsp~---g~~~lasgs~D~~i~vwd~~~-~~  291 (344)
T 4gqb_B          230 FV-FGDENGTVSLVDTKSTSCVLSSA--------VHS----QCVTGLV-FSPH---SVPFLASLSEDCSLAVLDSSL-SE  291 (344)
T ss_dssp             EE-EEETTSEEEEEESCC--CCEEEE--------CCS----SCEEEEE-ECSS---SSCCEEEEETTSCEEEECTTC-CE
T ss_pred             eE-EeccCCcEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EccC---CCeEEEEEeCCCeEEEEECCC-Cc
Confidence            65 67789999999999999999998        774    4678888 9995   322899999999999999997 55


Q ss_pred             ceeeeeccCCCeeEEEeecCCCc
Q 024245          244 PLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      + ..+.+|.+.|++++|+|++..
T Consensus       292 ~-~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          292 L-FRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             E-EEECCCSSCEEEEEECSSSTT
T ss_pred             E-EEEcCCCCCEEEEEEeCCCCe
Confidence            4 467899999999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=243.15  Aligned_cols=234  Identities=18%  Similarity=0.249  Sum_probs=191.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .....+.+|.+.|++++|+|++.+|++|+.||.|+|||+.+++....+.+|.  ..|.+++|+|  ++++|++|+.|++|
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~--~~~~l~sgs~D~~i  174 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDH--SGKLLASCSADMTI  174 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSCC
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--CcEEEEEEcC--CCCEEEEEeCCCeE
Confidence            3467789999999999999999999999999999999999999999999998  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||+.++++..    .+..+......+.+...... ......+...+|++.++..+. .+.+|..    +.++|++..+
T Consensus       175 ~iwd~~~~~~~~----~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          175 KLWDFQGFECIR----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             CEEETTSSCEEE----CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEeCCCCceeE----EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECCCCCEE
Confidence            999998876543    55555555555554443322 233345667789998887654 4556665    8899999754


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-----------------CCceEEEE
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGFVNVLA  226 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----------------~g~~~l~~  226 (270)
                      +  +|+.|++|++||++++++...+.        +|.    ..+.++. |+|+..                 +|. +|++
T Consensus       250 ~--s~s~D~~v~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~s  313 (410)
T 1vyh_C          250 A--SCSNDQTVRVWVVATKECKAELR--------EHR----HVVECIS-WAPESSYSSISEATGSETKKSGKPGP-FLLS  313 (410)
T ss_dssp             E--EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECCSCGGGGGGGCCSCC-------CC-EEEE
T ss_pred             E--EEcCCCeEEEEECCCCceeeEec--------CCC----ceEEEEE-EcCcccccchhhhccccccccCCCCC-EEEE
Confidence            4  56679999999999999988887        663    4677787 988521                 144 8999


Q ss_pred             ecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |+.||.|++||+++ ++++..+.+|...|++++|+|+|.+|-
T Consensus       314 gs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~  354 (410)
T 1vyh_C          314 GSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFIL  354 (410)
T ss_dssp             EETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             EeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEE
Confidence            99999999999998 889999999999999999999998763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.3e-36  Score=234.09  Aligned_cols=236  Identities=14%  Similarity=0.220  Sum_probs=187.4

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+..+++++|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|  ++++|++++.|+.
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~s~~~d~~  120 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNI  120 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECT--TSSEEEEEETTCE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECC--CCCEEEEEeCCCe
Confidence            35677899999999999999999999999999999999999999999999888  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      |++||+.+..........+..+......+.+............+...+|++.+++.+. .+.+|..    ++|+|++..+
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCCCCEE
Confidence            9999998764322122334445444444444333334444556778889998877654 4566766    8999999754


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +|+.|+.|++||+++++++..+.        +|.    ..+.+++ |+|+   +. +|++|+.||.|++||+++ ++
T Consensus       200 ~--sg~~d~~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-~~p~---~~-~l~s~s~d~~v~iwd~~~-~~  259 (340)
T 1got_B          200 V--SGACDASAKLWDVREGMCRQTFT--------GHE----SDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA-DQ  259 (340)
T ss_dssp             E--EEETTSCEEEEETTTCSEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TE
T ss_pred             E--EEeCCCcEEEEECCCCeeEEEEc--------CCc----CCEEEEE-EcCC---CC-EEEEEcCCCcEEEEECCC-Cc
Confidence            3  57779999999999999999888        673    4678887 9995   44 999999999999999998 66


Q ss_pred             ceeeeec--cCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKV--HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~--~~~~v~~~~~s~~g~~ls  268 (270)
                      ++..+..  +...|++++|+|+|.+|.
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~  286 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEE
Confidence            6666542  335799999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=231.91  Aligned_cols=230  Identities=14%  Similarity=0.215  Sum_probs=187.2

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      +...+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..+.  ..+.+++|+|  ++++|++++.|+.|+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~sp--dg~~l~~g~~dg~v~  147 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSP--DSQYLATGTHVGKVN  147 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECT--TSSEEEEECTTSEEE
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECC--CCCEEEEEcCCCcEE
Confidence            345688999999999999999999999999999999999999999998877  5599999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEE
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~  164 (270)
                      +||+++++..    ..+..+......+.+...... ......+...+|++.+++.+. .+.+|..    ++|+|+++.++
T Consensus       148 i~~~~~~~~~----~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          148 IFGVESGKKE----YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGHAMPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             EEETTTCSEE----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCCCEEEECTTSCEEE
T ss_pred             EEEcCCCcee----EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEcccCCceeEEEEcCCCCEEE
Confidence            9999988643    244444443433333332222 223335667889998876654 4556655    89999998554


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                        +++.|+.|++||+++++....+.        +|.    ..+.+++ |+|+   ++ +|++|+.|++|++||+++ +++
T Consensus       223 --s~s~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~sp~---~~-~l~s~s~D~~v~iwd~~~-~~~  282 (321)
T 3ow8_A          223 --TASDDGYIKIYDVQHANLAGTLS--------GHA----SWVLNVA-FCPD---DT-HFVSSSSDKSVKVWDVGT-RTC  282 (321)
T ss_dssp             --EECTTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TEE
T ss_pred             --EEcCCCeEEEEECCCcceeEEEc--------CCC----CceEEEE-ECCC---CC-EEEEEeCCCcEEEEeCCC-CEE
Confidence              67789999999999999988888        673    4678888 9995   44 999999999999999998 899


Q ss_pred             eeeeeccCCCeeEEEeecCCCcee
Q 024245          245 LTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..+.+|...|++++|+|+|.+|.
T Consensus       283 ~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          283 VHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE
Confidence            999999999999999999998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-36  Score=240.61  Aligned_cols=232  Identities=17%  Similarity=0.291  Sum_probs=190.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++++++++|.+.|++++|+|++++|++|+.|++|++||+.+++++..+.+|.  ..|.+++|+|  ++++|++++.|++|
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~l~s~s~D~~i  216 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD--HNVSSVSIMP--NGDHIVSASRDKTI  216 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS--SCEEEEEECS--SSSEEEEEETTSEE
T ss_pred             cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCEEEEEEeC--CCCEEEEEeCCCeE
Confidence            5678899999999999999999999999999999999999999999999998  5699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC--
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP--  161 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~--  161 (270)
                      ++||++++.+..    .+..+......+.+...... ......+...+|++...+... .+.+|..    ++|+|++.  
T Consensus       217 ~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          217 KMWEVQTGYCVK----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYS  291 (410)
T ss_dssp             EEEETTTCCEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGGG
T ss_pred             EEEECCCCcEEE----EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCccccc
Confidence            999999886543    55566555555544433322 233345677889998776554 4455655    78888632  


Q ss_pred             -----------------eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          162 -----------------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       162 -----------------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                                       .+++ +|+.|+.|++||+++++++..+.        +|.    ..+.++. |+|+   |+ +|
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~-sgs~D~~i~iwd~~~~~~~~~~~--------~h~----~~v~~v~-~~~~---g~-~l  353 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLV--------GHD----NWVRGVL-FHSG---GK-FI  353 (410)
T ss_dssp             GGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEE--------CCS----SCEEEEE-ECSS---SS-CE
T ss_pred             chhhhccccccccCCCCCEEE-EEeCCCeEEEEECCCCceEEEEE--------CCC----CcEEEEE-EcCC---CC-EE
Confidence                             2343 67789999999999999999998        774    3677887 9985   55 89


Q ss_pred             EEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       225 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++|+.||.|++||+++ ++++..+.+|...|++++|+|++.+|.
T Consensus       354 ~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~  396 (410)
T 1vyh_C          354 LSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVV  396 (410)
T ss_dssp             EEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             EEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence            9999999999999998 888999999999999999999998763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.9e-36  Score=231.30  Aligned_cols=230  Identities=17%  Similarity=0.168  Sum_probs=185.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++++.+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.  +.|.+++|+|  ++++|++++.|++|
T Consensus        46 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~sgs~D~~v  121 (304)
T 2ynn_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLTV  121 (304)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSCE
T ss_pred             ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC--CcEEEEEEcC--CCCEEEEECCCCeE
Confidence            5677889999999999999999999999999999999999999999999998  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--CC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EG  160 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~~  160 (270)
                      ++||++++...   ...+..+......+.+...  .........+.+.+|++...........++..    +.|+|  ++
T Consensus       122 ~lWd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (304)
T 2ynn_A          122 KLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (304)
T ss_dssp             EEEEGGGTTEE---EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC
T ss_pred             EEEECCCCcch---hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC
Confidence            99999876421   2234455555554544432  12233444567788998777655544445543    67776  45


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .++ + +++.|++|++||+++++++.++.        +|.    ..+.+++ |+|+   ++ +|++|+.||+|++||+++
T Consensus       199 ~~l-~-s~s~D~~i~iWd~~~~~~~~~~~--------~h~----~~v~~~~-~~p~---~~-~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          199 PYM-I-TASDDLTIKIWDYQTKSCVATLE--------GHM----SNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             CEE-E-EEETTSEEEEEETTTTEEEEEEE--------CCS----SCEEEEE-ECSS---SS-EEEEEETTSCEEEEETTT
T ss_pred             CEE-E-EEcCCCeEEEEeCCCCccceeeC--------CCC----CCEEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC
Confidence            433 3 67789999999999999999998        774    3577787 9995   44 999999999999999999


Q ss_pred             CCcceeeeeccCCCeeEEEeecCCC
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                       ++++..+..|...+++++|+|++.
T Consensus       260 -~~~~~~~~~~~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          260 -YKVEKTLNVGLERSWCIATHPTGR  283 (304)
T ss_dssp             -CCEEEEECCSSSSEEEEEECTTCG
T ss_pred             -CceeeeccCCCccEEEEEECCCCC
Confidence             889999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-35  Score=231.78  Aligned_cols=234  Identities=17%  Similarity=0.247  Sum_probs=183.4

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE-------------------------------
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-------------------------------   56 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------   56 (270)
                      .+..+++++|.+.|++++|+|++++|++|+.||.|+|||..+++....+                               
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            3567889999999999999999999999999999999998766544333                               


Q ss_pred             -----------------eecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeec
Q 024245           57 -----------------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV  119 (270)
Q Consensus        57 -----------------~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (270)
                                       ..|.  ..|.+++|+|  ++..|++++.|++|++||+++++...    .+..+......+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~----~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHT--NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQ----SFHGHGADVLCLDLA  205 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECS--SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEE----EEECCSSCEEEEEEC
T ss_pred             EEeccccccccccceeeeccC--CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEE----EEcCCCCCeEEEEEE
Confidence                             2344  5588899998  88899999999999999999886533    566666655555555


Q ss_pred             cCCc---cceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245          120 KEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (270)
Q Consensus       120 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  192 (270)
                      ....   .......+...+||+.+++.+. .+.+|..    ++|+|++..++  +++.|++|++||++.++.+..+..  
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~~~~~~--  280 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREVAIYSK--  280 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECC--
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEEEEEcC--
Confidence            4432   2333445677889998887654 4566665    89999997544  567799999999998887776652  


Q ss_pred             CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                            +.  ....+.++. |+|+   |+ +|++|+.|+.|++||+.+ ++++..+.+|...|++++|+|||.+|.
T Consensus       281 ------~~--~~~~~~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          281 ------ES--IIFGASSVD-FSLS---GR-LLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             ------TT--CCSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             ------CC--cccceeEEE-EeCC---CC-EEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEE
Confidence                  21  123466777 9995   55 999999999999999998 788899999999999999999998864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.2e-36  Score=238.05  Aligned_cols=247  Identities=13%  Similarity=0.210  Sum_probs=179.7

Q ss_pred             CCCCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         5 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      |..+.+.++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|.  ..|.+++|+|  ++++|++++.
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~--~g~~las~~~  128 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAP--NGQSVACGGL  128 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--TTCCCCEECT--TSSEEEECCS
T ss_pred             cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--CCEEEEEECC--CCCEEEEeeC
Confidence            34456778899999999999999999999999999999999999999999999888  5599999999  8888999888


Q ss_pred             CCcEEEEEccCCccCC---CCcccee------------------------------------------------cccceE
Q 024245           85 DGTVKCWDIENGGLSS---NPSLTIK------------------------------------------------TNSYHF  113 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~---~~~~~~~------------------------------------------------~~~~~~  113 (270)
                      |+.+++||+.+.....   .....+.                                                .+....
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            9889999876421100   0000000                                                000111


Q ss_pred             EEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeee
Q 024245          114 CKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (270)
Q Consensus       114 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~  187 (270)
                      ..+.+..  ..........+.+.+||++........+.+|..    ++|+|++..++  +|+.|++|++||+++++.+..
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETTTTEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECCCCcEEEE
Confidence            1111111  011122333556778998765555556777776    89999998554  677899999999999998888


Q ss_pred             eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----eccCCCeeEEEeecC
Q 024245          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPGLECSMWRN  263 (270)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~s~~  263 (270)
                      +....     .........+.+++ |+|+   |+ +|++|+.||.|++||+.+ ++.+..+    .+|...|++++|+||
T Consensus       287 ~~~~~-----~~~~~~~~~v~~~~-~s~~---g~-~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          287 YNREP-----DRNDNELPIVTSVA-FSIS---GR-LLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSD  355 (380)
T ss_dssp             ECCCC-----SSSCCSSCSCSEEE-ECSS---SS-EEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred             ecccc-----cccccccCceEEEE-ECCC---CC-EEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEECCC
Confidence            76310     01111223477887 9995   55 999999999999999988 6666666    689999999999999


Q ss_pred             CCcee
Q 024245          264 PITMS  268 (270)
Q Consensus       264 g~~ls  268 (270)
                      |.+|.
T Consensus       356 g~~l~  360 (380)
T 3iz6_a          356 GSALC  360 (380)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            98764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.5e-35  Score=224.63  Aligned_cols=239  Identities=14%  Similarity=0.122  Sum_probs=175.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC--CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..  .+.+..+.+|.  ++|.+++|++..++++|++++.|++|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            346789999999999999999999999999999999974  36778888998  66999999862237899999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccC---CccceecCCCCceEEEeccCcee-eeccCCCCC----eEecCCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---PYANAKQANEPKDCYEREVGETV-DTDSLCDSK----DDVPAEG  160 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~s~~~  160 (270)
                      ++||+++++...  +..+..+......+.+...   .........+...+|++...... ...+.+|..    ++|+|++
T Consensus        80 ~iWd~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           80 MIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEBSSSCBCC--CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEcCCCceEE--EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            999999875322  3344444444444444432   12233344566778888765322 334556665    8899873


Q ss_pred             ------------CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          161 ------------PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       161 ------------~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                                  ..+++ +|+.|++|+|||+++++    ....+.        +|    ...+.+++ |+|+...+. +|
T Consensus       158 ~~~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~--------~H----~~~V~~v~-~sp~~~~~~-~l  222 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YM  222 (297)
T ss_dssp             ------------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EE
T ss_pred             ccccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEec--------CC----CCceEEEE-ECCCCCCce-EE
Confidence                        13444 67789999999998766    455666        67    34688888 999632245 99


Q ss_pred             EEecCCCcEEEEEcCCCCc--ceeee--eccCCCeeEEEeecCCCcee
Q 024245          225 LAGYEDGSILVWDIRNPGI--PLTAM--KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       225 ~~~~~dg~i~vwd~~~~~~--~~~~~--~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++|+.|++|++||+++...  ....+  ..|...|.+++|+|+|.+|.
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la  270 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  270 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEE
Confidence            9999999999999987322  12233  46788999999999998874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=227.55  Aligned_cols=229  Identities=17%  Similarity=0.224  Sum_probs=176.8

Q ss_pred             CcccccccccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      .+++.+++|.+.|++++|+|+    +.+|++|+.|++|+|||+..++.  ...+.+|.  ..|.+++|++  ++.+++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~--~~v~~~~~~~--~~~~l~s~   98 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ--LGVVSVDISH--TLPIAASS   98 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECS--SSSEEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC--CCEEEEEECC--CCCEEEEE
Confidence            345677899999999999984    56999999999999999987654  34567777  6699999999  98999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec---CCCCceEEEeccCceeeeccCCCCC----eE
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ---ANEPKDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                      +.|++|++||+.+++...    .+..+......+.+  .+....+.   ..+...+|++..++.... +..+..    ++
T Consensus        99 s~D~~i~lWd~~~~~~~~----~~~~~~~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~~v~~~~  171 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIK----SIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIA  171 (321)
T ss_dssp             ETTSEEEEEETTTTEEEE----EEECCTTCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE-EECSSSCEEEEE
T ss_pred             eCCCcEEEEECCCCCEEE----EEeCCCccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCCCceEEEEE
Confidence            999999999999886543    34443333322332  33332222   244566788887765543 333333    89


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |+|++++++  +|+.|+.|++||+++++.+.++.        +|.    ..+.+++ |+|+   ++ +|++|+.||.|++
T Consensus       172 ~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~l~-~spd---~~-~l~s~s~dg~i~i  232 (321)
T 3ow8_A          172 YSPDGKYLA--SGAIDGIINIFDIATGKLLHTLE--------GHA----MPIRSLT-FSPD---SQ-LLVTASDDGYIKI  232 (321)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCCCEEE-ECTT---SC-EEEEECTTSCEEE
T ss_pred             ECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEc--------ccC----CceeEEE-EcCC---CC-EEEEEcCCCeEEE
Confidence            999998654  56679999999999999999988        674    3577787 9995   55 9999999999999


Q ss_pred             EEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          236 WDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||+++ ++....+.+|...|.+++|+|++.+|.
T Consensus       233 wd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          233 YDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             EETTT-CCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EECCC-cceeEEEcCCCCceEEEEECCCCCEEE
Confidence            99998 788899999999999999999998763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-35  Score=232.14  Aligned_cols=229  Identities=12%  Similarity=0.143  Sum_probs=169.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE----EeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .....+|...|++++|+|++. +++++.||+|+|||+.+++....    ..+|.  ..|.+++|+|  ++++|++++.|+
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--dg~~l~sgs~dg  161 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFS--DGTQAVSGGKDF  161 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCS--SCEEEEEECS--SSSEEEEEETTS
T ss_pred             ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCC--CCEEEEEECC--CCCEEEEEeCCC
Confidence            344567999999999999985 45677899999999988765432    23455  6799999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeec-cCCCCC----eEecCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTD-SLCDSK----DDVPAE  159 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~s~~  159 (270)
                      +|++||+++++...    .+..+......+.+....  ........+.+.+||++.++..... ...+..    ++|+|+
T Consensus       162 ~v~iwd~~~~~~~~----~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          162 SVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             CEEEEETTTTEEEE----EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             eEEEEECCCCcEEE----EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            99999999886543    555555555555544333  2334445567888999887765443 233333    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +..+++ +|+.|+.|++||+++++++..+.        +|.    ..+.+++ |+|+  +++ +|++|+.||+|+|||++
T Consensus       238 ~~~~la-~g~~d~~i~~wd~~~~~~~~~~~--------~~~----~~v~~l~-~sp~--~~~-~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          238 KDDTFA-CGDETGNVSLVNIKNPDSAQTSA--------VHS----QNITGLA-YSYH--SSP-FLASISEDCTVAVLDAD  300 (357)
T ss_dssp             STTEEE-EEESSSCEEEEESSCGGGCEEEC--------CCS----SCEEEEE-ECSS--SSC-CEEEEETTSCEEEECTT
T ss_pred             ccceEE-EeecccceeEEECCCCcEeEEEe--------ccc----eeEEEEE-EcCC--CCC-EEEEEeCCCEEEEEECC
Confidence            877766 56779999999999999999888        663    4678888 9995  233 89999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeec-CCCce
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWR-NPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l  267 (270)
                      + ++++..+ +|.+.|++++|+| |+.+|
T Consensus       301 ~-~~~~~~~-~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          301 F-SEVFRDL-SHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             S-CEEEEEC-CCSSCEEEEEECSSSTTEE
T ss_pred             C-CcEeEEC-CCCCCEEEEEEeCCCCCEE
Confidence            8 7766555 7999999999998 77765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-34  Score=220.58  Aligned_cols=235  Identities=15%  Similarity=0.295  Sum_probs=187.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|.  ..|.+++|+|  ++++|++++.|+.|
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~~~d~~i  131 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP--QSNLIVSGSFDESV  131 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSCE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcC--CCCEEEEEeCCCcE
Confidence            5667888999999999999999999999999999999999999999999988  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||+++++...    .+..+......+.+...... ......+...+|++..++.+......+..    ++|+|+++++
T Consensus       132 ~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  207 (312)
T 4ery_A          132 RIWDVKTGKCLK----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI  207 (312)
T ss_dssp             EEEETTTCCEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEE
T ss_pred             EEEECCCCEEEE----EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEE
Confidence            999999886533    44444444444444433322 23334566788999888776655544443    8999999866


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +++.|+.|++||+++++.+..+.        +|.....  +.... +.+.  ++. +|++|+.||.|++||+++ ++
T Consensus       208 ~--~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~--~~~~~-~~~~--~~~-~l~sg~~dg~i~vwd~~~-~~  270 (312)
T 4ery_A          208 L--AATLDNTLKLWDYSKGKCLKTYT--------GHKNEKY--CIFAN-FSVT--GGK-WIVSGSEDNLVYIWNLQT-KE  270 (312)
T ss_dssp             E--EEETTTEEEEEETTTTEEEEEEC--------SSCCSSS--CCCEE-EECS--SSC-EEEECCTTSCEEEEETTT-CC
T ss_pred             E--EEcCCCeEEEEECCCCcEEEEEE--------ecCCceE--EEEEE-EEeC--CCc-EEEEECCCCEEEEEECCC-ch
Confidence            5  45568999999999999998888        5644222  22222 4432  455 999999999999999998 88


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+..+.+|...|.+++|+|++.+|.
T Consensus       271 ~~~~~~~h~~~v~~~~~~p~~~~l~  295 (312)
T 4ery_A          271 IVQKLQGHTDVVISTACHPTENIIA  295 (312)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEE
T ss_pred             hhhhhhccCCcEEEEeecCcCCceE
Confidence            8999999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-34  Score=224.07  Aligned_cols=231  Identities=14%  Similarity=0.174  Sum_probs=180.6

Q ss_pred             CCcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCC-----CceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      ..+..+|++|.+.|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|.  ..|.+++|+|  ++++|++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~--dg~~l~s   82 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--HIVQDCTLTA--DGAYALS   82 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--SCEEEEEECT--TSSEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc--ccEEEEEECC--CCCEEEE
Confidence            35678899999999999999954 7999999999999999864     34567788888  6699999999  9999999


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      ++.|++|++||+++++...    .+..+......+.+...... ......+...+|++....  ...+.+|..    ++|
T Consensus        83 ~s~D~~v~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDWVSQVRV  156 (319)
T ss_dssp             EETTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEE
T ss_pred             EeCCCEEEEEECCCCCeeE----EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeccCCcEEEEEE
Confidence            9999999999999986543    56666665555555443322 233345567789886432  234556665    788


Q ss_pred             cCCCC-----eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          157 PAEGP-----KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       157 s~~~~-----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      +|.+.     .+++ +++.|+.|++||+++.+....+.        +|.    ..+.+++ |+|+   |+ +|++|+.||
T Consensus       157 ~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~--------~h~----~~v~~~~-~sp~---g~-~l~s~~~dg  218 (319)
T 3frx_A          157 VPNEKADDDSVTII-SAGNDKMVKAWNLNQFQIEADFI--------GHN----SNINTLT-ASPD---GT-LIASAGKDG  218 (319)
T ss_dssp             CCC------CCEEE-EEETTSCEEEEETTTTEEEEEEC--------CCC----SCEEEEE-ECTT---SS-EEEEEETTC
T ss_pred             ccCCCCCCCccEEE-EEeCCCEEEEEECCcchhheeec--------CCC----CcEEEEE-EcCC---CC-EEEEEeCCC
Confidence            87543     2343 66779999999999998888887        673    4678887 9995   55 999999999


Q ss_pred             cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          232 SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .|++||+++ ++++..+.. ...|.+++|+|++.+|.
T Consensus       219 ~i~iwd~~~-~~~~~~~~~-~~~v~~~~~sp~~~~la  253 (319)
T 3frx_A          219 EIMLWNLAA-KKAMYTLSA-QDEVFSLAFSPNRYWLA  253 (319)
T ss_dssp             EEEEEETTT-TEEEEEEEC-CSCEEEEEECSSSSEEE
T ss_pred             eEEEEECCC-CcEEEEecC-CCcEEEEEEcCCCCEEE
Confidence            999999998 888888875 46899999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-34  Score=223.28  Aligned_cols=238  Identities=13%  Similarity=0.116  Sum_probs=169.2

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+.+|++.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+.+|.  ..|.+++|++..++++|++++.|++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3567999999999999999999999999999999998774  466788888  669999998622378999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCC---ccceecCCCCceEEEeccCce--eeeccCCCCC----eEecCCC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVPAEG  160 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~s~~~  160 (270)
                      +||++++....  ...+..+......+.+....   ........+...+|++.....  ....+.+|..    ++|+|+.
T Consensus        85 iWd~~~~~~~~--~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           85 IWREENGTWEK--SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EECCSSSCCCE--EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEECCCCcceE--EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            99998864322  33444454444444443331   222333455677888876532  2345566665    8899873


Q ss_pred             C----------------eEEEEecCCCceEEEEeCCCc---ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC-CC
Q 024245          161 P----------------KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-QG  220 (270)
Q Consensus       161 ~----------------~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-~g  220 (270)
                      .                .+++ +|+.|++|++||++..   +++..+.        +|.    ..+.+++ |+|+.. ++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~--------~h~----~~V~~v~-~sp~~~~~~  228 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLE--------AHS----DWVRDVA-WAPSIGLPT  228 (316)
T ss_dssp             CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCB--------CCS----SCEEEEE-CCCCSSCSC
T ss_pred             CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecc--------cCC----CceEEEE-ecCCCCCCC
Confidence            1                2343 7888999999999755   3555666        673    4688888 999631 12


Q ss_pred             ceEEEEecCCCcEEEEEcCCC---CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          221 FVNVLAGYEDGSILVWDIRNP---GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      . +|++|+.||+|++||+++.   ......+..|...|++++|+|+|.+|.
T Consensus       229 ~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~la  278 (316)
T 3bg1_A          229 S-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILA  278 (316)
T ss_dssp             C-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEE
T ss_pred             c-eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEE
Confidence            4 8999999999999999862   123345677899999999999998874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-33  Score=218.32  Aligned_cols=232  Identities=15%  Similarity=0.163  Sum_probs=184.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +.+..+..|...|.+++|+|++++|++|+.|+.|++||+.++    .....+.+|.  ..|.++.|++  + +.+++++.
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~-~~l~s~s~  162 (340)
T 1got_B           88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT--GYLSCCRFLD--D-NQIVTSSG  162 (340)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS--SCEEEEEEEE--T-TEEEEEET
T ss_pred             CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC--ccEEEEEECC--C-CcEEEEEC
Confidence            566778899999999999999999999999999999999865    3556677887  6699999999  7 56999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      |++|++||+++++...    .+..+......+.+...... ......+...+|++..+.... .+.+|..    ++|+|+
T Consensus       163 d~~i~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~  237 (340)
T 1got_B          163 DTTCALWDIETGQQTT----TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPN  237 (340)
T ss_dssp             TSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTT
T ss_pred             CCcEEEEECCCCcEEE----EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCC
Confidence            9999999999886543    55555555555554443322 233345677889998876554 4556665    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +..++  +|+.|++|++||+++++.+..+..        + . ....+.+++ |+|+   |+ +|++|+.||.|++||+.
T Consensus       238 ~~~l~--s~s~d~~v~iwd~~~~~~~~~~~~--------~-~-~~~~v~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          238 GNAFA--TGSDDATCRLFDLRADQELMTYSH--------D-N-IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             SSEEE--EEETTSCEEEEETTTTEEEEEECC--------T-T-CCSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETT
T ss_pred             CCEEE--EEcCCCcEEEEECCCCcEEEEEcc--------C-C-cccceEEEE-ECCC---CC-EEEEECCCCeEEEEEcc
Confidence            98554  567799999999999888777652        1 1 233577887 9995   55 99999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      + ++.+..+.+|...|++++|+|+|.+|.
T Consensus       301 ~-~~~~~~~~~h~~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          301 K-ADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             T-CCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             c-CcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence            8 888999999999999999999998763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-33  Score=219.06  Aligned_cols=233  Identities=15%  Similarity=0.217  Sum_probs=181.6

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc-----eeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ++..+|+||++.|++++|+|+ +++|+||+.|++|+|||+.+.+     +...+.+|.  ..|.+++|+|  ++++|+++
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~--dg~~l~s~  104 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISS--DGQFALSG  104 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECT--TSSEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECC--CCCEEEEE
Confidence            355689999999999999996 6899999999999999987643     456777887  6699999999  99999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s  157 (270)
                      +.|+.|++|+........    ................... .......+...+|+............+|..    ++|+
T Consensus       105 ~~d~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~  180 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS  180 (340)
T ss_dssp             ETTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred             cccccceEEeecccceee----eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence            999999999998775432    2222222222222222222 222334556677888777777667777766    7888


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      +++...++++++.|+.|++||+++++.+..+.        +|.    ..+.+++ |+|+   ++ +|++|+.||.|++||
T Consensus       181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--------~h~----~~v~~~~-~s~~---~~-~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GHT----GYLNTVT-VSPD---GS-LCASGGKDGQAMLWD  243 (340)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTCEEEEEE
T ss_pred             cCCCCcEEEEEcCCCEEEEEECCCCceeeEec--------CCC----CcEEEEE-ECCC---CC-EEEEEeCCCeEEEEE
Confidence            88766555577789999999999999998888        673    4678888 9995   44 999999999999999


Q ss_pred             cCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          238 IRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +++ .+++..+.. ...|.+++|+|++.+++
T Consensus       244 ~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          244 LNE-GKHLYTLDG-GDIINALCFSPNRYWLC  272 (340)
T ss_dssp             TTT-TEEEEEEEC-SSCEEEEEECSSSSEEE
T ss_pred             ecc-CceeeeecC-CceEEeeecCCCCceee
Confidence            998 788888875 46899999999988775

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=222.58  Aligned_cols=203  Identities=15%  Similarity=0.148  Sum_probs=154.1

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w   91 (270)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+.+|.  ..|.+++|+|  ++ .+|++++.|++|++|
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~--~~V~~~~~~~--~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA--AQVTCVAASP--HKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECS--SCTTEEEEEETTSCEEEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC--CceEEEEecC--CCCCceeeeccccccccc
Confidence            456899999999999999999999999999999999999999999998  6699999999  65 478999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      |+++++...  .+....+......+.+....  ........+.+.+||+.+++.+. .+.+|..    ++|+|++..+++
T Consensus       198 d~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~fsp~g~~~la  274 (344)
T 4gqb_B          198 DTRCPKPAS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-SSAVHSQCVTGLVFSPHSVPFLA  274 (344)
T ss_dssp             ETTSSSCEE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-EEECCSSCEEEEEECSSSSCCEE
T ss_pred             cccccceee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-EEcCCCCCEEEEEEccCCCeEEE
Confidence            999886543  11112222222333332221  12223345667889998877654 4566766    899999976665


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                       +|+.|++|+|||+++++++ .+.        +|.    ..+.+++ |+|+   ++.+|++|+.||+|++|++.+
T Consensus       275 -sgs~D~~i~vwd~~~~~~~-~~~--------~H~----~~V~~v~-~sp~---~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          275 -SLSEDCSLAVLDSSLSELF-RSQ--------AHR----DFVRDAT-WSPL---NHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             -EEETTSCEEEECTTCCEEE-EEC--------CCS----SCEEEEE-ECSS---STTEEEEEETTSCEEEEECCC
T ss_pred             -EEeCCCeEEEEECCCCcEE-EEc--------CCC----CCEEEEE-EeCC---CCeEEEEEcCCCeEEEEECCC
Confidence             6778999999999988765 455        673    4688898 9995   333788999999999999987

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.5e-33  Score=215.13  Aligned_cols=228  Identities=15%  Similarity=0.228  Sum_probs=176.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+++.+++|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|.  ..|.+++|+|  ++.+|++++.|++|
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~D~~i  131 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDK--KASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSCEEEEEETTSCE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcC--CCCEEEEEeCCCeE
Confidence            3577899999999999999999999999999999999999999999999998  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCC-------ccceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-------YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s  157 (270)
                      ++||++...     +..+..+......+.+....       ........+...+|++...+... .+.+|..    ++|+
T Consensus       132 ~vwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~s  205 (319)
T 3frx_A          132 KVWTIKGQC-----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTAS  205 (319)
T ss_dssp             EEEETTSCE-----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEEC
T ss_pred             EEEECCCCe-----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEc
Confidence            999997542     22344444444333333221       12333445667889988765443 4556666    8999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      |++++++  +++.|+.|+|||+++++.+..+.        .+     ..+.+++ |+|+   +. +|++++. +.+++|+
T Consensus       206 p~g~~l~--s~~~dg~i~iwd~~~~~~~~~~~--------~~-----~~v~~~~-~sp~---~~-~la~~~~-~~i~v~~  264 (319)
T 3frx_A          206 PDGTLIA--SAGKDGEIMLWNLAAKKAMYTLS--------AQ-----DEVFSLA-FSPN---RY-WLAAATA-TGIKVFS  264 (319)
T ss_dssp             TTSSEEE--EEETTCEEEEEETTTTEEEEEEE--------CC-----SCEEEEE-ECSS---SS-EEEEEET-TEEEEEE
T ss_pred             CCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CC-----CcEEEEE-EcCC---CC-EEEEEcC-CCcEEEE
Confidence            9998554  56779999999999999988887        22     3578888 9995   54 7777765 4599999


Q ss_pred             cCCCCcceeeee--------ccCCCeeEEEeecCCCcee
Q 024245          238 IRNPGIPLTAMK--------VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       238 ~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.. ...+..+.        .|...+.+++|+|||++|.
T Consensus       265 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  302 (319)
T 3frx_A          265 LDP-QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF  302 (319)
T ss_dssp             ETT-EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred             eCc-CeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence            987 55444443        3456789999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=218.34  Aligned_cols=235  Identities=12%  Similarity=0.147  Sum_probs=176.4

Q ss_pred             Ccccccccccc-cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE---EeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ++++++.+|.. .|++++|+|+|++||+|+.|+.|+|||+.++.....   ..+|.  ..|.+++|+|  ++++|++++.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp--~g~~l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSP--CGNYLASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECT--TSSEEEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECC--CCCEEEEEEC
Confidence            57888999988 999999999999999999999999999988764322   24566  6799999999  9999999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce--eeeccCCCCC----eEec
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVP  157 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~s  157 (270)
                      |+++++||+.++....  +..+.++......+.+...... ......+...+|++.....  ....+.+|..    ++|+
T Consensus        82 D~~v~iw~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           82 DATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             TSCEEEEEECCC-EEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             CCcEEEEEccCCCeEE--EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            9999999998764321  3355556555555554433322 2233456678899876643  2345666766    8999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |+++.++  +++.|+.|++||.++++  +..++.        +|    ...+.+++ |+|+   |+ +|++|+.||+|++
T Consensus       160 p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~--------~h----~~~v~~l~-~sp~---g~-~l~s~s~D~~v~i  220 (345)
T 3fm0_A          160 PSQELLA--SASYDDTVKLYREEEDDWVCCATLE--------GH----ESTVWSLA-FDPS---GQ-RLASCSDDRTVRI  220 (345)
T ss_dssp             SSSSCEE--EEETTSCEEEEEEETTEEEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEE
T ss_pred             CCCCEEE--EEeCCCcEEEEEecCCCEEEEEEec--------CC----CCceEEEE-ECCC---CC-EEEEEeCCCeEEE
Confidence            9998554  56779999999998775  345666        66    34688888 9995   55 9999999999999


Q ss_pred             EEcCCCCc--------------ceeeeec-cCCCeeEEEeecCCCcee
Q 024245          236 WDIRNPGI--------------PLTAMKV-HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       236 wd~~~~~~--------------~~~~~~~-~~~~v~~~~~s~~g~~ls  268 (270)
                      ||...++.              ++..+.+ |...|++++|+|++..|.
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  268 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA  268 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence            99754221              2334444 888999999999887653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-32  Score=214.79  Aligned_cols=230  Identities=15%  Similarity=0.152  Sum_probs=165.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+...+.+|...|++++|+|++.++++|+.|++|++||+++++.+..+.+|.  ..|.+++|+|  ++++|++++.|++|
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSP--DNRQILSAGAEREI  142 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECS--STTEEEEEETTSCE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECC--CCCEEEEEcCCCEE
Confidence            3567789999999999999999999999999999999999999999999998  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCC-----------ccceecCCCCceEEEeccCceeeeccCCCCC----
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-----------YANAKQANEPKDCYEREVGETVDTDSLCDSK----  153 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (270)
                      ++||+.......  ......+......+......           ........+...+|+..  ......+.+|..    
T Consensus       143 ~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          143 KLWNILGECKFS--SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNH  218 (343)
T ss_dssp             EEEESSSCEEEE--CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEE
T ss_pred             EEEeccCCceee--eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceE
Confidence            999997432211  11111222223323222211           12223334556678732  233345566666    


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                      ++|+|+|++++  +|+.|+.|++||++. ......+..             ...+.+++ |+|+   ++ +++ ++.|+.
T Consensus       219 ~~~s~~g~~l~--sgs~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~-~sp~---~~-~la-~~~d~~  277 (343)
T 2xzm_R          219 LSISPNGKYIA--TGGKDKKLLIWDILNLTYPQREFDA-------------GSTINQIA-FNPK---LQ-WVA-VGTDQG  277 (343)
T ss_dssp             EEECTTSSEEE--EEETTCEEEEEESSCCSSCSEEEEC-------------SSCEEEEE-ECSS---SC-EEE-EEESSC
T ss_pred             EEECCCCCEEE--EEcCCCeEEEEECCCCcccceeecC-------------CCcEEEEE-ECCC---CC-EEE-EECCCC
Confidence            89999998654  567799999999954 334444431             22478888 9995   44 555 556888


Q ss_pred             EEEEEcCCCCccee--eee-----------ccCCCeeEEEeecCCCcee
Q 024245          233 ILVWDIRNPGIPLT--AMK-----------VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       233 i~vwd~~~~~~~~~--~~~-----------~~~~~v~~~~~s~~g~~ls  268 (270)
                      |++||+.+ ++...  .+.           +|...|++++|+|+|.+|.
T Consensus       278 v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          278 VKIFNLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             EEEEESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             EEEEEeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence            99999987 44332  333           6788899999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-32  Score=210.92  Aligned_cols=231  Identities=19%  Similarity=0.251  Sum_probs=179.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|.  ..|.+++|+|  ++++|++++.|+.|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~i   89 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSS--DSNLLVSASDDKTL   89 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--CceEEEEEcC--CCCEEEEECCCCEE
Confidence            4577889999999999999999999999999999999999999999998888  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||+++++...    .+..+......+.+...... ......+...+|++..++.+. .+..|..    ++|+|+++.+
T Consensus        90 ~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           90 KIWDVSSGKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEEETTTCCEEE----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEECCCCcEEE----EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEE
Confidence            999999886533    55555554444444433222 223345667889998877654 3445544    8999999855


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +++.|+.|++||+++++.+..+..       .+    ...+..++ |+|+   ++ +|++++.||.|++||+++ ++
T Consensus       165 ~--~~~~d~~i~~wd~~~~~~~~~~~~-------~~----~~~~~~~~-~~~~---~~-~l~~~~~d~~i~iwd~~~-~~  225 (312)
T 4ery_A          165 V--SSSYDGLCRIWDTASGQCLKTLID-------DD----NPPVSFVK-FSPN---GK-YILAATLDNTLKLWDYSK-GK  225 (312)
T ss_dssp             E--EEETTSCEEEEETTTCCEEEEECC-------SS----CCCEEEEE-ECTT---SS-EEEEEETTTEEEEEETTT-TE
T ss_pred             E--EEeCCCcEEEEECCCCceeeEEec-------cC----CCceEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC-Cc
Confidence            4  566799999999999988877752       22    33566677 9995   44 999999999999999998 88


Q ss_pred             ceeeeeccCCCeeE--EEee-cCCCce
Q 024245          244 PLTAMKVHLEPGLE--CSMW-RNPITM  267 (270)
Q Consensus       244 ~~~~~~~~~~~v~~--~~~s-~~g~~l  267 (270)
                      ++..+.+|...+..  ..|+ +++.+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWI  252 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEE
Confidence            88888888765433  3444 455543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-32  Score=213.59  Aligned_cols=232  Identities=15%  Similarity=0.191  Sum_probs=174.3

Q ss_pred             CcccccccccccEEEEEE-----eC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCC
Q 024245            9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG   75 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~   75 (270)
                      ++..+|+||.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .+...+.+|.  ..|.+++|+|  +
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~--~   87 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ--E   87 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS--S
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC--C
Confidence            467889999999999999     77 8999999999999999998753       3566778888  6699999999  9


Q ss_pred             CCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeee-ccCCCCC
Q 024245           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDT-DSLCDSK  153 (270)
Q Consensus        76 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  153 (270)
                      +.+|++++.|++|++||+++++...    .+..+......+.+...... ......+...+|++........ ...+|..
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~----~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYK----RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD  163 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEE----EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEE----EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence            9999999999999999999886533    55566555554444433322 2233456678898874332221 2234544


Q ss_pred             ----eEecCCCC---------eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          154 ----DDVPAEGP---------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       154 ----~~~s~~~~---------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                          ++|+|++.         .+++ +++.|+.|++||. ..+....+.        +|.    ..+.+++ |+|+   |
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~-~~~~~~~~~--------~h~----~~v~~~~-~s~~---g  225 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNT-NFQIRYTFK--------AHE----SNVNHLS-ISPN---G  225 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEE-EEETTSEEEEEET-TTEEEEEEE--------CCS----SCEEEEE-ECTT---S
T ss_pred             eeeeeeeccccccccccCCCCCEEE-EEcCCCEEEEEcC-CCceeEEEc--------Ccc----ccceEEE-ECCC---C
Confidence                88888872         2344 5667999999994 456666776        663    4678888 9995   5


Q ss_pred             ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      + +|++|+.||.|++||++....+...+. +...|++++|+|++.+|+
T Consensus       226 ~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la  271 (343)
T 2xzm_R          226 K-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVA  271 (343)
T ss_dssp             S-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEE
T ss_pred             C-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEE
Confidence            5 999999999999999965455555554 456799999999998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-32  Score=216.78  Aligned_cols=215  Identities=21%  Similarity=0.360  Sum_probs=164.9

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      ..|++++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|.  ..|.+++|+|  ++++|++++.|++|++||+++++.
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCee
Confidence            359999999999999999999999999999999999999998  6699999999  999999999999999999998865


Q ss_pred             CCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeec------cCCCCC----eEecCCCCeEEEE
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTD------SLCDSK----DDVPAEGPKYMAV  166 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~s~~~~~~~~~  166 (270)
                      ..    .+... .....+.+..  ..........+.+.+|++.+++.+...      ..+|..    ++|+|+++.++  
T Consensus       200 ~~----~~~~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~--  272 (393)
T 1erj_A          200 SL----TLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV--  272 (393)
T ss_dssp             EE----EEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE--
T ss_pred             EE----EEEcC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE--
Confidence            32    22221 2222233322  122233344567788998887655432      145655    89999998654  


Q ss_pred             ecCCCceEEEEeCCCcc------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          167 AGEQLSEVEIWDLNTAE------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      +|+.|+.|++||+++..            +...+.        +|    ...+.+++ |+|+   ++ +|++|+.||.|+
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~~~---~~-~l~sgs~D~~v~  335 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--------GH----KDFVLSVA-TTQN---DE-YILSGSKDRGVL  335 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEE--------CC----SSCEEEEE-ECGG---GC-EEEEEETTSEEE
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe--------cc----cCcEEEEE-ECCC---CC-EEEEEeCCCeEE
Confidence            57779999999998643            333444        55    34678887 9985   44 999999999999


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +||+++ ++++..+.+|...|.+++|++
T Consensus       336 iwd~~~-~~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          336 FWDKKS-GNPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             EEETTT-CCEEEEEECCSSCEEEEEECS
T ss_pred             EEECCC-CeEEEEECCCCCCEEEEEecC
Confidence            999999 888999999999999999987

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=213.37  Aligned_cols=238  Identities=16%  Similarity=0.154  Sum_probs=170.0

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEE-ee-cCCCcceEEEEEeeCCCCCEEEEEe
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSS-WV-HSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      .++++++++|.+.|++++|+|+  +|++|+.|+.|++||+..+  +....+ .. |.  ..|.+++|+|  ++++|++++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~las~s   77 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRP--HTSLLAAGS   77 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECT--TSSEEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECC--CCCEEEEEe
Confidence            3678899999999999999988  9999999999999999875  345555 23 65  6799999999  999999999


Q ss_pred             CCCcEEEEEccCCcc---CCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccC-c--eeeeccCCCCC---
Q 024245           84 RDGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVG-E--TVDTDSLCDSK---  153 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---  153 (270)
                      .|++|++||++....   ...+...+.++......+.+...... ......+...+|++... .  .....+.+|..   
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            999999999964321   01112334455554544444333222 22333566788998532 2  23445677766   


Q ss_pred             -eEecCCCCeEEEEecCCCceEEEEeCCCc--ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                       ++|+|++..++  +++.|++|++||.+++  +++..+.        +|.    ..+.++. |+|+. ++. +|++|+.|
T Consensus       158 ~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~--------~h~----~~v~~~~-~~~~~-~~~-~l~s~s~D  220 (330)
T 2hes_X          158 HVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLN--------GHE----GTVWSSD-FDKTE-GVF-RLCSGSDD  220 (330)
T ss_dssp             EEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEEC--------CCS----SCEEEEE-ECCSS-SSC-EEEEEETT
T ss_pred             EEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEcc--------CCC----CcEEEEE-ecCCC-Cee-EEEEEeCC
Confidence             89999997543  5777999999998766  5677777        673    4688888 99962 144 89999999


Q ss_pred             CcEEEEEcCCCC-------cceeeeec-cCCCeeEEEeecCCCcee
Q 024245          231 GSILVWDIRNPG-------IPLTAMKV-HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       231 g~i~vwd~~~~~-------~~~~~~~~-~~~~v~~~~~s~~g~~ls  268 (270)
                      ++|++||++...       .+...+.+ |...|++++|++++.+++
T Consensus       221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s  266 (330)
T 2hes_X          221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIAS  266 (330)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEE
T ss_pred             CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEE
Confidence            999999997621       33445554 889999999998886655

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.2e-33  Score=217.01  Aligned_cols=208  Identities=16%  Similarity=0.180  Sum_probs=156.6

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w   91 (270)
                      ...+|.+.|++++|+|++++|++|+.|+.|++||+++++.+..+.+|.  ..|.+++|+|  ++ .++++++.|++|++|
T Consensus       134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~--~~~~~~~s~~~dg~v~~w  209 (357)
T 4g56_B          134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS--SEVNCVAACP--GKDTIFLSCGEDGRILLW  209 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TCSSCEEEEETTSCEEEC
T ss_pred             ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEcc--CCCceeeeeccCCceEEE
Confidence            455899999999999999999999999999999999999999999988  6699999999  65 478999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      |+++++...  ......+......+.+....  ........+.+.+|++.+++.+. .+.+|..    ++|+|++..+++
T Consensus       210 d~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          210 DTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-TSAVHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             CTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-EECCCSSCEEEEEECSSSSCCEE
T ss_pred             ECCCCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-EEeccceeEEEEEEcCCCCCEEE
Confidence            999886543  22222233333333333221  22223345667889998876554 4455555    899999977665


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +|+.|++|+|||+++++++..+         +|    ...+.+++ |+|.  ++. +|++|+.||+|++||+.+.++..
T Consensus       287 -sgs~D~~i~iwd~~~~~~~~~~---------~H----~~~V~~va-fsP~--d~~-~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          287 -SISEDCTVAVLDADFSEVFRDL---------SH----RDFVTGVA-WSPL--DHS-KFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             -EEETTSCEEEECTTSCEEEEEC---------CC----SSCEEEEE-ECSS--STT-EEEEEETTSCEEEEECC------
T ss_pred             -EEeCCCEEEEEECCCCcEeEEC---------CC----CCCEEEEE-EeCC--CCC-EEEEEcCCCeEEEEECCCCCccc
Confidence             6778999999999998877654         46    34688898 9995  455 99999999999999998744433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.3e-32  Score=227.45  Aligned_cols=237  Identities=13%  Similarity=0.126  Sum_probs=177.2

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ++...++.+|...|++++|+|+|++||+|+.|++|+|||+.+++  ....+.+|.  .+|.+++|+|  ++++|++++.+
T Consensus        49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~--~~v~~v~fs~--dg~~l~~~~~~  124 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGEG  124 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEECC
T ss_pred             cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC--CceEEEEECC--CCCEEEEEECC
Confidence            46778899999999999999999999999999999999997543  445677787  6699999999  99999988865


Q ss_pred             ----CcEEEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245           86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        86 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                          +.|++||.  ++..    ..+.++......+.+.....  .......+...+|+....+.. ..+.+|..    ++
T Consensus       125 ~~~~~~v~~wd~--~~~~----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          125 RERFGHVFLFDT--GTSN----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVR  197 (611)
T ss_dssp             SSCSEEEEETTT--CCBC----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEE
T ss_pred             CCceeEEEEeeC--CCCc----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-eeeccccCceEEEE
Confidence                36777774  4332    24455555555444443322  334445667788987766544 45677877    89


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      |+|+|+.++  +++.|++|++||+.+++.+..+.... ....+|    ...+.+++ |+|+   |+ +|++++.|++|++
T Consensus       198 fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h----~~~V~~v~-~spd---g~-~l~s~s~D~~v~l  265 (611)
T 1nr0_A          198 YNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKI  265 (611)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT-SSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEE
T ss_pred             ECCCCCEEE--EEECCCcEEEEECCCCcEeeeecccc-cccccc----CCCEEEEE-ECCC---CC-EEEEEeCCCeEEE
Confidence            999998543  56779999999999998887774100 000134    45788898 9995   55 9999999999999


Q ss_pred             EEcCCCCcce-------------------------------------------eeeeccCCCeeEEEeecCCCcee
Q 024245          236 WDIRNPGIPL-------------------------------------------TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       236 wd~~~~~~~~-------------------------------------------~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||+++ ++++                                           ..+.+|...|++++|+|||++|.
T Consensus       266 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~  340 (611)
T 1nr0_A          266 WNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF  340 (611)
T ss_dssp             EETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE
Confidence            99987 4432                                           34457999999999999998763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=216.63  Aligned_cols=240  Identities=15%  Similarity=0.128  Sum_probs=174.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +++..+++|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.  ..|.+++|++..++++|++++.||
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEeccCC
Confidence            4678899999999999999999999999999999999998  556777788887  669999999821289999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccC--C-ccceecCCCCceEEEeccCcee-eeccCCCCC----eEecC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--P-YANAKQANEPKDCYEREVGETV-DTDSLCDSK----DDVPA  158 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~s~  158 (270)
                      .|++||+.+++...  ...+..+......+.+...  . ........+...+|++...... ...+.+|..    ++|+|
T Consensus        80 ~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           80 KVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             CEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             EEEEEEcCCCceeE--eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            99999999886322  3344444444554444443  2 2233444566778998876432 224445554    88999


Q ss_pred             -------------CCCeEEEEecCCCceEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          159 -------------EGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       159 -------------~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                                   ++..++  +++.|+.|++||++++..    ...+.        +|    ...+.+++ |+|+...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~sp~~~~~~  222 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFV--TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS  222 (379)
T ss_dssp             CC----------CTTCEEE--EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE
T ss_pred             ccccccccccCCCCCCEEE--EEeCCCeEEEEEecCCCcceeeEEEEe--------cc----cCcEeEEE-ECCCCCCCC
Confidence                         566444  466799999999987653    34444        45    44688888 999521145


Q ss_pred             eEEEEecCCCcEEEEEcCCCCc----ceeeeeccCCCeeEEEeecCCCcee
Q 024245          222 VNVLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       +|++++.||.|++||+++...    .+.....|...|++++|+|+|.+|.
T Consensus       223 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          223 -YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             -EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             -eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence             999999999999999998422    2222234788999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-31  Score=210.94  Aligned_cols=229  Identities=11%  Similarity=0.081  Sum_probs=178.4

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      +..|.++|++++|+|++++|++|+.|+.|++||+.+++  .+..+..|.  ..|.+++|+|  ++++|++++.|+.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeC--CCCEEEEEcCCCeEEEE
Confidence            45699999999999999999999999999999999887  888888888  6699999999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce---eeeccCCCCC----eEecCCCCeE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET---VDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      |+++++...  ......+......+.+...... ......+...+|++.....   ......+|..    ++|+|++..+
T Consensus        80 d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           80 TLKGRTWKP--TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEETTEEEE--EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             ECCCCeeee--eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            998876432  2222333334444444333222 2233356677899887763   3334455554    8999999755


Q ss_pred             EEEecCCCceEEEEeCC------------------CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          164 MAVAGEQLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      +  +++.|+.|++||++                  .++.+..+.        +|    ...+.+++ |+|+   +. +|+
T Consensus       158 ~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~  218 (372)
T 1k8k_C          158 A--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------SS----CGWVHGVC-FSAN---GS-RVA  218 (372)
T ss_dssp             E--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------CC----SSCEEEEE-ECSS---SS-EEE
T ss_pred             E--EEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------CC----CCeEEEEE-ECCC---CC-EEE
Confidence            4  46679999999954                  566677766        45    34678887 9995   44 999


Q ss_pred             EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +++.||.|++||+++ ++++..+..|..+|++++|+|++.+|.
T Consensus       219 ~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~  260 (372)
T 1k8k_C          219 WVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVA  260 (372)
T ss_dssp             EEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             EEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEE
Confidence            999999999999998 889999999999999999999998875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.2e-32  Score=225.44  Aligned_cols=226  Identities=15%  Similarity=0.118  Sum_probs=172.8

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .+++.+.+++|+|+|++|++++ ++.|++|++.+++....+.+|.  ..|.+++|+|  +|++|++|+.|++|++||+.+
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~--~~v~~~~~sp--dg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEESSS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCC--CceEEEEECC--CCcEEEEEeCCCCEEEeECCC
Confidence            3467788999999999999988 5699999999889999999998  6699999999  999999999999999999976


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEec
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  168 (270)
                      ++...  ...+..+......+.+..............   ..++....+. ....+.+|..    ++|+|+++..++ ++
T Consensus        91 ~~~~~--~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~~~~l~-s~  166 (611)
T 1nr0_A           91 TTHIL--KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRII-SG  166 (611)
T ss_dssp             TTCCE--EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEE-EE
T ss_pred             Cccee--eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCceEEEECCCCCeEEE-EE
Confidence            54321  234444544444444433322222222211   1233333333 2345677777    899999986555 67


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      +.|++|++||.+++++...+.        +|.    ..+.+++ |+|+   |+ +|++|+.|++|++||+.+ ++++..+
T Consensus       167 s~D~~v~lwd~~~~~~~~~l~--------~H~----~~V~~v~-fspd---g~-~las~s~D~~i~lwd~~~-g~~~~~~  228 (611)
T 1nr0_A          167 SDDNTVAIFEGPPFKFKSTFG--------EHT----KFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVF  228 (611)
T ss_dssp             ETTSCEEEEETTTBEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEEC
T ss_pred             eCCCeEEEEECCCCeEeeeec--------ccc----CceEEEE-ECCC---CC-EEEEEECCCcEEEEECCC-CcEeeee
Confidence            789999999999998888888        773    4688888 9995   55 999999999999999998 7777777


Q ss_pred             e-------ccCCCeeEEEeecCCCcee
Q 024245          249 K-------VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ~-------~~~~~v~~~~~s~~g~~ls  268 (270)
                      .       +|.+.|++++|+|||++|.
T Consensus       229 ~~~~~~~~~h~~~V~~v~~spdg~~l~  255 (611)
T 1nr0_A          229 EDDSLKNVAHSGSVFGLTWSPDGTKIA  255 (611)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccCCCEEEEEECCCCCEEE
Confidence            4       7999999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=210.67  Aligned_cols=240  Identities=16%  Similarity=0.210  Sum_probs=174.4

Q ss_pred             CCCCcccccccccccEEEEEEeCC---CCEEEEecCCCcEEEEeCCC-Ccee-EEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            6 PPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         6 ~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      .|.+.+..+++|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|.  ..|.+++|+|  ++++|+
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~  102 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--GPVLDVCWSD--DGSKVF  102 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--SCEEEEEECT--TSSEEE
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--CCEEEEEECc--CCCEEE
Confidence            455788899999999999999998   69999999999999999987 5444 6778888  6699999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeeeccC--------
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSL--------  149 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------  149 (270)
                      +++.||.|++||+++++...     ...+......+.+...+..   ......+...+|++..++.+.....        
T Consensus       103 s~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  177 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQ-----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD  177 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred             EEcCCCcEEEEEcCCCCcee-----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence            99999999999999886432     3334444444444223332   2223345566677765543221110        


Q ss_pred             ----------------------------------CCCC--eEecCCCCe--EEEEecCCCceEEEEeCCCc---ceeeee
Q 024245          150 ----------------------------------CDSK--DDVPAEGPK--YMAVAGEQLSEVEIWDLNTA---ERCTRL  188 (270)
Q Consensus       150 ----------------------------------~~~~--~~~s~~~~~--~~~~~~~~d~~i~iwd~~~~---~~~~~~  188 (270)
                                                        .+..  +++.++...  ..+++++.|+.|++||++..   ..+..+
T Consensus       178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence                                              0111  333333221  11335677999999999877   456666


Q ss_pred             ccCcCCCCCCcccCC--------CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe
Q 024245          189 HQNSCGGSPNFSSKG--------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM  260 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~--------~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  260 (270)
                      .        +|....        ...+.+++ |+|+   ++ +|++|+.||.|++||+++ ++++..+.+|..+|++++|
T Consensus       258 ~--------~~~~~~~~~~~~~~~~~v~~~~-~sp~---~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~  323 (368)
T 3mmy_A          258 K--------CHRSNGTNTSAPQDIYAVNGIA-FHPV---HG-TLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCF  323 (368)
T ss_dssp             E--------CSEEC----CCCEEECCEEEEE-ECTT---TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEE
T ss_pred             e--------eeecccccccccccccceEEEE-EecC---CC-EEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEE
Confidence            6        453211        11578888 9995   44 899999999999999998 8899999999999999999


Q ss_pred             ecCCCcee
Q 024245          261 WRNPITMS  268 (270)
Q Consensus       261 s~~g~~ls  268 (270)
                      +|+|.+|.
T Consensus       324 s~~g~~l~  331 (368)
T 3mmy_A          324 NHNGNIFA  331 (368)
T ss_dssp             CTTSSCEE
T ss_pred             CCCCCeEE
Confidence            99998874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-31  Score=208.60  Aligned_cols=228  Identities=15%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|  ++++|++++.|+.|++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--GTIWSIDVDC--FTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--CcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence            45688999999999999999999999999999999999999999999888  6699999999  9999999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecC-C-----CCceEEEeccCceee----------eccCCCC--
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N-----EPKDCYEREVGETVD----------TDSLCDS--  152 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~----------~~~~~~~--  152 (270)
                      ||+.+++...    .+. .......+.+........... .     +...+|++.......          ..+..+.  
T Consensus       101 wd~~~~~~~~----~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          101 WDVSNGQCVA----TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EETTTCCEEE----EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EECCCCcEEE----Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            9999886543    333 333333333333332222222 2     566778877654211          1111221  


Q ss_pred             -C---eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          153 -K---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       153 -~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                       .   ++|+|+++.++  +++.||.|++||+++ ++.+..+.        +|    ...+.+++ |+|+   +. +|+++
T Consensus       176 ~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~  236 (369)
T 3zwl_B          176 DAATVAGWSTKGKYII--AGHKDGKISKYDVSNNYEYVDSID--------LH----EKSISDMQ-FSPD---LT-YFITS  236 (369)
T ss_dssp             CCEEEEEECGGGCEEE--EEETTSEEEEEETTTTTEEEEEEE--------CC----SSCEEEEE-ECTT---SS-EEEEE
T ss_pred             cceeEEEEcCCCCEEE--EEcCCCEEEEEECCCCcEeEEEEe--------cC----CCceeEEE-ECCC---CC-EEEEe
Confidence             2   88999998655  456689999999998 67777777        55    34678887 9995   44 99999


Q ss_pred             cCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          228 YEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.||.|++||+++ ++.+..+. +...+..++|+|++.++.
T Consensus       237 ~~d~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~  275 (369)
T 3zwl_B          237 SRDTNSFLVDVST-LQVLKKYE-TDCPLNTAVITPLKEFII  275 (369)
T ss_dssp             ETTSEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred             cCCceEEEEECCC-Cceeeeec-CCCCceeEEecCCCceEE
Confidence            9999999999998 78888887 678999999999998763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-31  Score=212.27  Aligned_cols=227  Identities=15%  Similarity=0.236  Sum_probs=175.0

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +.+|...|++++|+|+|++||+|+.||.|+|||+++++.+..+.+|.  ..+.++++++    ..|++++.|+.+++||.
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~--~~v~~~s~~~----~~l~sgs~d~~i~~~d~  216 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNS----YILSSGSRSGHIHHHDV  216 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEET----TEEEEEETTSEEEEEET
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC--CceEEEeeCC----CEEEEEeCCCceeEeee
Confidence            45688899999999999999999999999999999999999999998  5688888765    79999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCcee---eeccCCCCC----eEecCCCCeEEE
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETV---DTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      .....   .+..+..+....+.......... ......+...+|+...++..   ......|..    ++|+|++..+++
T Consensus       217 ~~~~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          217 RVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             TSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             cccce---eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            87542   23345555555554444433332 22334556677888766532   223344444    889998877765


Q ss_pred             E-ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE--ecCCCcEEEEEcCCCC
Q 024245          166 V-AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPG  242 (270)
Q Consensus       166 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--~~~dg~i~vwd~~~~~  242 (270)
                      + +|+.|++|++||++++++...+.        .|     ..+.++. |+|+   +. .+++  |+.||.|+|||+.+ +
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~--------~~-----~~v~~~~-~~~~---~~-~lv~~sg~~d~~I~iwd~~~-~  354 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVD--------AH-----SQVCSIL-WSPH---YK-ELISGHGFAQNQLVIWKYPT-M  354 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-EETT---TT-EEEEEECTTTCCEEEEETTT-C
T ss_pred             EEeecCCCEEEEEeCCccccceeec--------cc-----cceeeee-ecCC---CC-eEEEEEecCCCEEEEEECCC-C
Confidence            4 46789999999999999988887        33     3466676 8885   33 4444  45899999999999 8


Q ss_pred             cceeeeeccCCCeeEEEeecCCCcee
Q 024245          243 IPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +++..+.+|.+.|++++|+|||.+|.
T Consensus       355 ~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          355 AKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            99999999999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=208.33  Aligned_cols=236  Identities=13%  Similarity=0.136  Sum_probs=161.5

Q ss_pred             ccccc-cc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-------CceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245           10 PVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus        10 ~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      .+..+ .+ |...|++++|+|++++|++|+.|+.|+|||+..       .+.+..+.+|.  ..|.+++|+|  ++++|+
T Consensus        48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--~g~~la  123 (330)
T 2hes_X           48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSN--DGYYLA  123 (330)
T ss_dssp             EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECT--TSCEEE
T ss_pred             EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECC--CCCEEE
Confidence            34445 44 999999999999999999999999999999853       34667788888  6699999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCc-eeeeccCCCCC----e
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGE-TVDTDSLCDSK----D  154 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~  154 (270)
                      +++.|++|++||++.......++..+..+......+.+...... ......+.+.+|+..... .....+.+|..    +
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~  203 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS  203 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence            99999999999995432111122344455554444444333222 223335567789887653 34456777877    8


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCc--------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTA--------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      +|+|++....+++++.|++|++||++.+        .+...+..       .|    ...+.+++ |+|.   +  +|++
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~s~~---~--~l~s  266 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-------VH----KRQVYNVA-WGFN---G--LIAS  266 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-------CC----SSCEEEEE-ECTT---S--CEEE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-------cc----ccceEEEE-EcCC---C--EEEE
Confidence            8999843222336778999999999765        23333331       24    44688888 9863   3  7999


Q ss_pred             ecCCCcEEEEEcCCCCc--cee-eeeccCC-CeeEEEeec--CCCce
Q 024245          227 GYEDGSILVWDIRNPGI--PLT-AMKVHLE-PGLECSMWR--NPITM  267 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~--~~~-~~~~~~~-~v~~~~~s~--~g~~l  267 (270)
                      ++.||.|++||..+ ++  ... .+.+|.. .|++++|+|  ++.+|
T Consensus       267 ~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l  312 (330)
T 2hes_X          267 VGADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVKWLELNGKTIL  312 (330)
T ss_dssp             EETTSCEEEEEEET-TEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred             EeCCCEEEEEEcCC-CceEEEeccccccccceEEEEEEecCCCceEE
Confidence            99999999999987 42  232 3357876 899999999  67665

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-31  Score=207.24  Aligned_cols=229  Identities=14%  Similarity=0.125  Sum_probs=167.3

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      ..+|...|++++|+|++++|++|+.|+.|++||+..+  +++..+.+|.  ..|.+++|+|  ++++|++++.|++|++|
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEVKSVAWAP--SGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC--CCceEEEEeC--CCCEEEEEECCCeEEEE
Confidence            3689999999999999999999999999999998876  4567788888  6699999999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce-eeeccCCCCC----eEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      |++++.... .+..+..+......+.+...... ......+.+.+|+....+. ....+.+|..    ++|+|++++++ 
T Consensus       133 d~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~-  210 (345)
T 3fm0_A          133 EVDEEDEYE-CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-  210 (345)
T ss_dssp             EECTTSCEE-EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE-
T ss_pred             ECCCCCCeE-EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE-
Confidence            998764211 12233344444444443333222 2233455677888887653 3456777777    89999998654 


Q ss_pred             EecCCCceEEEEeCCCcc---------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          166 VAGEQLSEVEIWDLNTAE---------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                       +++.|++|+|||.....               ++..+..       .|    ...+.+++ |+|+   +. .|++++.|
T Consensus       211 -s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~~~~---~~-~l~s~~~d  273 (345)
T 3fm0_A          211 -SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-------FH----SRTIYDIA-WCQL---TG-ALATACGD  273 (345)
T ss_dssp             -EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-------SC----SSCEEEEE-ECTT---TC-CEEEEETT
T ss_pred             -EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-------CC----CCcEEEEE-EecC---CC-EEEEEeCC
Confidence             56779999999964321               2223331       13    44688888 9995   44 89999999


Q ss_pred             CcEEEEEcCCCCc---c-----eeeeeccCCCeeEEEeecCCC
Q 024245          231 GSILVWDIRNPGI---P-----LTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       231 g~i~vwd~~~~~~---~-----~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      +.|++|+......   +     .....+|...|++++|+|++.
T Consensus       274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence            9999999876321   1     122357999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.7e-32  Score=217.66  Aligned_cols=235  Identities=14%  Similarity=0.137  Sum_probs=161.9

Q ss_pred             cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEE--eecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ......+|...|+||+|+| ++.+||+|+.||.|+|||+.+++....+  .+|.  +.|.+|+|+|. ++++|++++.||
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~-~~~~l~s~s~D~  187 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPL-NTNQFYASSMEG  187 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSS-CTTEEEEECSSS
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCC-CCCEEEEEeCCC
Confidence            4455667899999999999 6679999999999999999877654444  4566  77999999984 568999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      +|++||++++....  .............+.+....... .....+.+.+|++....  ...+.+|..    ++|+|+++
T Consensus       188 ~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          188 TTRLQDFKGNILRV--FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             CEEEEETTSCEEEE--EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEEECTTCS
T ss_pred             EEEEeeccCCceeE--EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--eEEEecccceEEeeeecCCCc
Confidence            99999998764321  11111222222333333222222 22234556778876432  335667766    89999998


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      .+++ +++.|+.|+|||+++.+....+...     .+|    ...+.+++ |+|+   |. +|++|+.||.|++||+++ 
T Consensus       264 ~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~-----~~h----~~~v~~~~-~spd---g~-~l~s~~~D~~i~iwd~~~-  327 (435)
T 4e54_B          264 WFLA-TASVDQTVKIWDLRQVRGKASFLYS-----LPH----RHPVNAAC-FSPD---GA-RLLTTDQKSEIRVYSASQ-  327 (435)
T ss_dssp             SEEE-EEETTSBCCEEETTTCCSSSCCSBC-----CBC----SSCEEECC-BCTT---SS-EEEEEESSSCEEEEESSS-
T ss_pred             eEEE-EecCcceeeEEecccccccceEEEe-----eec----ccccccee-ECCC---CC-eeEEEcCCCEEEEEECCC-
Confidence            7776 5667999999999987755544310     134    44688888 9995   55 999999999999999998 


Q ss_pred             CcceeeeeccCC------CeeEEEeecCCCce
Q 024245          242 GIPLTAMKVHLE------PGLECSMWRNPITM  267 (270)
Q Consensus       242 ~~~~~~~~~~~~------~v~~~~~s~~g~~l  267 (270)
                      +.....+..|..      .+....|+|++.++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (435)
T 4e54_B          328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI  359 (435)
T ss_dssp             SSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred             CccceEEecccccccccceeEEEEEcCCCCEE
Confidence            666666555432      23344555555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.3e-33  Score=219.96  Aligned_cols=229  Identities=12%  Similarity=0.071  Sum_probs=165.3

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      ++.|.+.|++++|+|++++|++|+.|+.|++||+.++  +.+..+.+|.  ..|.+++|+|  ++++|++++.|++|++|
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD--KIVTCVDWAP--KSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS--SCEEEEEECT--TTCCEEEEETTSSEEEC
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC--ceEEEEEEeC--CCCEEEEEeCCCeEEEE
Confidence            4557789999999999999999999999999999988  7778888888  6699999999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCce--eeeccCC-CCC----eEecCCCCeE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGET--VDTDSLC-DSK----DDVPAEGPKY  163 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~----~~~s~~~~~~  163 (270)
                      |+.+++.. .+...+..+......+.+...... ......+...+|++...+.  ....+.+ |..    ++|+|+++.+
T Consensus        83 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           83 EKRPDGTW-KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ------CC-CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             EcCCCCce-eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            99987611 123344445555554444433222 2333355677888887763  2333444 655    8999999755


Q ss_pred             EEEecCCCceEEEEeCCCcc------------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          164 MAVAGEQLSEVEIWDLNTAE------------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      +  +++.|+.|++||++..+                  ++..+         +|    ...+.+++ |+|+   ++ +|+
T Consensus       162 ~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~v~~~~-~sp~---~~-~l~  221 (377)
T 3dwl_C          162 A--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---------PS----GGWVHAVG-FSPS---GN-ALA  221 (377)
T ss_dssp             E--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---------CC----SSSEEEEE-ECTT---SS-CEE
T ss_pred             E--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---------cC----CceEEEEE-ECCC---CC-EEE
Confidence            4  56679999999986332                  22222         23    45688888 9995   54 999


Q ss_pred             EecCCCcEEEEEcCCCCcc----eeeeeccCCCeeEEEeecCCCcee
Q 024245          226 AGYEDGSILVWDIRNPGIP----LTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +++.||.|++||+++ ++.    +..+.+|...|++++|+|+|++|.
T Consensus       222 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  267 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVA  267 (377)
T ss_dssp             EEETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred             EEeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence            999999999999998 665    788999999999999999998875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.4e-31  Score=226.16  Aligned_cols=232  Identities=15%  Similarity=0.204  Sum_probs=179.2

Q ss_pred             cccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC-----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ....+++|.+.|++++|+|+ +.+|++|+.|++|++||+.+.     .....+.+|.  ..|.+++|+|  ++++|++++
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~--~g~~l~sgs  449 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSS--DGQFALSGS  449 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECT--TSSEEEEEE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC--CcEEEEEECC--CCCEEEEEe
Confidence            34568899999999999986 479999999999999999753     3456788888  6699999999  999999999


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceee--eccCCCCC----eEe
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVD--TDSLCDSK----DDV  156 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~  156 (270)
                      .|++|++||+.++....    .+..+...+..+.+...... ......+.+.+|+........  ....+|..    ++|
T Consensus       450 ~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTR----RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             TTSEEEEEETTTTEEEE----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred             CCCcEEEEECCCCccee----EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence            99999999999886543    55566555554444433322 233345567778875543322  22345655    889


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      +|++...++++++.|++|++||++++++...+.        +|    ...+.+++ |+|+   ++ +|++|+.||.|++|
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------~h----~~~v~~v~-~spd---g~-~l~sg~~Dg~i~iw  588 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------GH----TGYVSTVA-VSPD---GS-LCASGGKDGVVLLW  588 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSBCEEE
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EeCC---CC-EEEEEeCCCeEEEE
Confidence            998743233367789999999999999888888        67    34688888 9995   55 99999999999999


Q ss_pred             EcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          237 DIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |+++ ++++..+.. ...|.+++|+|++.+|+
T Consensus       589 d~~~-~~~~~~~~~-~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          589 DLAE-GKKLYSLEA-NSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             ETTT-TEEEECCBC-SSCEEEEEECSSSSEEE
T ss_pred             ECCC-CceEEEecC-CCcEEEEEEcCCCcEEE
Confidence            9998 777777764 56899999999998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-31  Score=211.22  Aligned_cols=233  Identities=20%  Similarity=0.249  Sum_probs=169.8

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC----------------CcceEEEEEeeCCCCCEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------AHGIVSVATGPSIGLNKV   79 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l   79 (270)
                      +|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..+..                ...|.+++|+|  ++++|
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCEE
Confidence            6999999999999999999987 68899999999988877765431                12489999999  99999


Q ss_pred             EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC---eE
Q 024245           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK---DD  155 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  155 (270)
                      ++++.|+.|++||+.+++...    .+..+......+.+...... ......+...+|++.+++...... .+..   ++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE----EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            999999999999999886533    45555555554444433322 223345567789998877554332 2222   88


Q ss_pred             ecC-CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          156 VPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       156 ~s~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      |+| ++.. ++ +|+.|+.|++||+++++.+..+.... ....+|    ...+.+++ |+|+   |+ +|++|+.||.|+
T Consensus       214 ~~~~~~~~-l~-~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h----~~~v~~v~-~~~~---g~-~l~s~s~d~~v~  281 (393)
T 1erj_A          214 VSPGDGKY-IA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVK  281 (393)
T ss_dssp             ECSTTCCE-EE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEE
T ss_pred             EECCCCCE-EE-EEcCCCcEEEEECCCCcEEEeecccc-cCCCCC----CCCEEEEE-ECCC---CC-EEEEEeCCCEEE
Confidence            999 6654 44 56779999999999998887764210 000134    45788888 9995   55 999999999999


Q ss_pred             EEEcCCC-----------CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          235 VWDIRNP-----------GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       235 vwd~~~~-----------~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +||+++.           +.+...+.+|...|.+++|+|++.+|.
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  326 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL  326 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE
Confidence            9999762           234567789999999999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.3e-31  Score=204.60  Aligned_cols=242  Identities=13%  Similarity=0.095  Sum_probs=175.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|.  ..|.+++|+|..++++|++++.
T Consensus         2 ~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~d~~~l~s~~~   79 (351)
T 3f3f_A            2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD--SSIVAIDWASPEYGRIIASASY   79 (351)
T ss_dssp             CCCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred             CccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC--CcEEEEEEcCCCCCCEEEEEcC
Confidence            345667899999999999999999999999999999999876    4666777787  6699999998323789999999


Q ss_pred             CCcEEEEEccCCccCC-----CCccceecccceEEEEeeccC--Cc-cceecCCCCceEEEeccCceeeec---------
Q 024245           85 DGTVKCWDIENGGLSS-----NPSLTIKTNSYHFCKLSLVKE--PY-ANAKQANEPKDCYEREVGETVDTD---------  147 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~---------  147 (270)
                      ||.|++||++++....     .+...+..+......+.+...  .. .......+...+|++...+.+...         
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            9999999998874321     112334444444544444443  22 233344566788998776533211         


Q ss_pred             ---cCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          148 ---SLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       148 ---~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                         ...+..    ++|+|+   +..+ + +++.|+.+.+|+...++.  +..+.        +|    ...+.+++ |+|
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~i~~~~-~~p  224 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKL-A-VSALEQAIIYQRGKDGKLHVAAKLP--------GH----KSLIRSIS-WAP  224 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEE-E-EEETTEEEEEEECTTSCEEEEEECC--------CC----CSCEEEEE-ECC
T ss_pred             ccccCCcccceeEEEeccCCCCCcEE-E-EecCCCcEEEEccCCCceeeeeecC--------CC----CcceeEEE-ECC
Confidence               112333    889997   6544 4 455689998888877764  45555        55    44688888 999


Q ss_pred             CCCC-CceEEEEecCCCcEEEEEcCCC---------------------------------------------Ccceeeee
Q 024245          216 SKSQ-GFVNVLAGYEDGSILVWDIRNP---------------------------------------------GIPLTAMK  249 (270)
Q Consensus       216 ~~~~-g~~~l~~~~~dg~i~vwd~~~~---------------------------------------------~~~~~~~~  249 (270)
                      ++.. +. +|++|+.||.|++||++..                                             .+++..+.
T Consensus       225 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          225 SIGRWYQ-LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CSSCSSE-EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             CCCCcce-EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence            6311 04 9999999999999999872                                             15677788


Q ss_pred             ccCCCeeEEEeecCCCcee
Q 024245          250 VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       250 ~~~~~v~~~~~s~~g~~ls  268 (270)
                      +|...|++++|+|++.+|.
T Consensus       304 ~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          304 DHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             TTSSCEEEEEECSSSCCEE
T ss_pred             cccccEEEEEEcCCCCEEE
Confidence            8999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-30  Score=201.40  Aligned_cols=249  Identities=14%  Similarity=0.132  Sum_probs=169.7

Q ss_pred             CCCCCccccccc--ccc--cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            5 PPPPDPVAVLRG--HRA--SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         5 ~~~~~~~~~~~~--h~~--~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      .-|-.|.+.|.+  ..+  .+++|+||+++ +||+| .|++|+|||+.++++++.+..+.+...|.+++|+|  ++++|+
T Consensus         8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~   83 (318)
T 4ggc_A            8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLA   83 (318)
T ss_dssp             CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEE
T ss_pred             ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEE
Confidence            344456666653  222  35789999986 77766 48999999999999999887666557799999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      +|+.||+|++||+++++...    .+..+......++.... ........+....++..........+.+|..    +.+
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~----~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEE----EEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEECCCcEEEeecCCceeEE----EecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999999999999987644    55566555554444332 1222233344455666666666666667766    788


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--------------CCCC-----CCc-----------------c
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------CGGS-----PNF-----------------S  200 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~-----~~h-----------------~  200 (270)
                      +++++.++  +++.|+.|++||+++++.........              ....     .+.                 .
T Consensus       159 ~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~  236 (318)
T 4ggc_A          159 APDGRHLA--SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  236 (318)
T ss_dssp             CTTSSEEE--EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred             cCCCCEEE--EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence            99998654  56679999999998765321111000              0000     000                 0


Q ss_pred             cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ......+..+. |+|..  ...++++|+.|+.|++||+++ ++++..+.+|.+.|++++|+|||.+|.
T Consensus       237 ~~~~~~v~~~~-~~~~~--~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          237 VDAHSQVCSIL-WSPHY--KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             EECSSCEEEEE-EETTT--TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             ccceeeeeeee-ecccc--cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            00112234444 77742  222333456899999999999 899999999999999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.4e-31  Score=209.20  Aligned_cols=234  Identities=18%  Similarity=0.246  Sum_probs=174.8

Q ss_pred             CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCC-------ceeEEEeecCCCcceEEEEEeeCCCC-CEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKV   79 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l   79 (270)
                      +.+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++       +++..+.+|.  ..|.+++|+|  ++ ++|
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p--~~~~~l  147 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT--KRVGIVAWHP--TAQNVL  147 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS--SCEEEEEECS--SBTTEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC--CeEEEEEECc--CCCCEE
Confidence            45667889999999999999 9999999999999999999987       6678888888  6699999999  86 699


Q ss_pred             EEEeCCCcEEEEEccCCccCCCCccce--ecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC---
Q 024245           80 ISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK---  153 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  153 (270)
                      ++++.|+.|++||+++++...    .+  ..+......+.+...... ......+...+|++..++.+.....+|..   
T Consensus       148 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGTGAAVL----TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP  223 (402)
T ss_dssp             EEEETTSCEEEEETTTTEEEE----EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred             EEEcCCCEEEEEECCCCCccE----EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence            999999999999999886543    44  344444444444433322 22334566788999888776654344543   


Q ss_pred             --eEecCCCCeEEEEec---CCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          154 --DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       154 --~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                        ++|+|++..+ + +|   +.|+.|++||+++++. +.....       .|    ...+.++. |+|+   ++.++++|
T Consensus       224 ~~~~~~~~~~~l-~-~g~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~---~~~l~~~g  286 (402)
T 2aq5_A          224 VHAVFVSEGKIL-T-TGFSRMSERQVALWDTKHLEEPLSLQEL-------DT----SSGVLLPF-FDPD---TNIVYLCG  286 (402)
T ss_dssp             CEEEECSTTEEE-E-EEECTTCCEEEEEEETTBCSSCSEEEEC-------CC----CSSCEEEE-EETT---TTEEEEEE
T ss_pred             eEEEEcCCCcEE-E-EeccCCCCceEEEEcCccccCCceEEec-------cC----CCceeEEE-EcCC---CCEEEEEE
Confidence              8999998643 3 45   5799999999998764 333331       12    33567777 9995   55344577


Q ss_pred             cCCCcEEEEEcCCCCcc-eeeeecc--CCCeeEEEeecCCCcee
Q 024245          228 YEDGSILVWDIRNPGIP-LTAMKVH--LEPGLECSMWRNPITMS  268 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~-~~~~~~~--~~~v~~~~~s~~g~~ls  268 (270)
                      +.||.|++||+.+ +++ +..+..|  ...|.+++|+|++.++.
T Consensus       287 ~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          287 KGDSSIRYFEITS-EAPFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             TTCSCEEEEEECS-STTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             cCCCeEEEEEecC-CCcceEeecccccCCcccceEEecccccce
Confidence            7899999999998 553 5666554  48999999999998763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-32  Score=221.47  Aligned_cols=233  Identities=9%  Similarity=0.006  Sum_probs=167.9

Q ss_pred             ccccEEEEEEeCCC---------CEEEE-------------------ecCCCcEEEEeCCCCcee----EEEeecCCCcc
Q 024245           17 HRASVTDVCFHQTK---------PILFA-------------------GTTGGELRIWDTVQHRTV----SSSWVHSAAHG   64 (270)
Q Consensus        17 h~~~v~~~~~s~~~---------~~l~s-------------------~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~   64 (270)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|.  +.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~--~~  209 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF--GE  209 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC--CS
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC--Cc
Confidence            57788999999875         45555                   567899999999877642    3455666  56


Q ss_pred             eEEEEEeeC----CCCCEEEEEeCCCcEEEEEccCCccC-------CCCccceecccceEEEEeeccCCccceecCCCCc
Q 024245           65 IVSVATGPS----IGLNKVISQGRDGTVKCWDIENGGLS-------SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK  133 (270)
Q Consensus        65 v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (270)
                      |.+++|+|.    .++.+|++++.||+|++||+.++...       ..+...+..+......+.+............+.+
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV  289 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFV  289 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEE
Confidence            999999992    12579999999999999999876432       1233445555555555554433333334445677


Q ss_pred             eEEEeccCceeeeccCCCCC----e--EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCcee
Q 024245          134 DCYEREVGETVDTDSLCDSK----D--DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC  207 (270)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~----~--~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  207 (270)
                      .+||+.++......+.+|..    +  +|+|++..+++ +++.|++|+|||++++++...+.        +|..  ...+
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~--------~~~~--~~~v  358 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTV--------SRFR--GSNL  358 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEE--------EECS--CCSC
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccc--------cccc--cCcc
Confidence            88999877655555677776    5  46787744555 67789999999999988877776        4532  1236


Q ss_pred             eeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+++ |+|+   ++ .|++++.|++|++||+++ +.++..+.+|.+.|++|+|+|+|.+|.
T Consensus       359 ~~v~-fsp~---~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          359 VPVV-YCPQ---IY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             CCEE-EETT---TT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred             cceE-eCCC---cC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEE
Confidence            7787 9995   55 899999999999999998 777788999999999999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-30  Score=208.82  Aligned_cols=231  Identities=16%  Similarity=0.131  Sum_probs=175.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +++..+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|.  ..|.+++|+|  ++++|++++.|+.|
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~v  205 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR--ATVTDIAIID--RGRNVLSASLDGTI  205 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS--SCEEEEEEET--TTTEEEEEETTSCE
T ss_pred             ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--CcEEEEEEcC--CCCEEEEEcCCCcE
Confidence            5667778999999999999999999999999999999999999999999888  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceec---ccceEEEEe-------------------eccCCccc---eecCCCCceEEEeccCce
Q 024245           89 KCWDIENGGLSSNPSLTIKT---NSYHFCKLS-------------------LVKEPYAN---AKQANEPKDCYEREVGET  143 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~  143 (270)
                      ++||+++++...    .+..   .......+.                   +.+++...   .....+...+|++..++.
T Consensus       206 ~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          206 RLWECGTGTTIH----TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             EEEETTTTEEEE----EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             EEeECCCCceeE----EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence            999999886543    2221   111111111                   11222222   223345677899998887


Q ss_pred             eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          144 VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       144 ~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      +......|..    ++|+|++..+++ +|+.||.|++||+++++. +..+.        +|   ....+.++. |.    
T Consensus       282 ~~~~~~~~~~~v~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~--------~~---~~~~v~~~~-~~----  344 (420)
T 3vl1_A          282 TIQLPSKFTCSCNSLTVDGNNANYIY-AGYENGMLAQWDLRSPECPVGEFL--------IN---EGTPINNVY-FA----  344 (420)
T ss_dssp             EEEECCTTSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------ES---TTSCEEEEE-EE----
T ss_pred             eEEcccccCCCceeEEEeCCCCCEEE-EEeCCCeEEEEEcCCCcCchhhhh--------cc---CCCCceEEE-eC----
Confidence            7777666665    899999985554 566799999999998754 66666        33   133455554 54    


Q ss_pred             CCceEEEEecCCCcEEEEEcCCCCc--------ceeeeeccCCCeeEEEeecCCC
Q 024245          219 QGFVNVLAGYEDGSILVWDIRNPGI--------PLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      +++ +|++++.||.|++||+..+.+        ....+..|...|.+++|+|++.
T Consensus       345 ~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          345 AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            344 999999999999999987422        2334567888999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-30  Score=225.56  Aligned_cols=234  Identities=13%  Similarity=0.146  Sum_probs=189.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+++.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|.  .+|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeE
Confidence            4567899999999999999999999999999999999999999999999888  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCCe
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGPK  162 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~~  162 (270)
                      ++||+.+++...    .+..+......+.+...... ......+...+|++..+......+.+|..    ++|+| ++. 
T Consensus        80 ~vw~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-  154 (814)
T 3mkq_A           80 RVFNYNTGEKVV----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-  154 (814)
T ss_dssp             EEEETTTCCEEE----EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-
T ss_pred             EEEECCCCcEEE----EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-
Confidence            999999886543    55555555554554443322 23334566788999888666666777766    89999 554 


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      .++ +++.||.|++||+++++....+..        +   ....+..+. |+|.. ++. +|++++.||.|++||+++ +
T Consensus       155 ~l~-~~~~dg~v~vwd~~~~~~~~~~~~--------~---~~~~v~~~~-~~~~~-~~~-~l~~~~~dg~i~~~d~~~-~  218 (814)
T 3mkq_A          155 TFA-SGCLDRTVKVWSLGQSTPNFTLTT--------G---QERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-K  218 (814)
T ss_dssp             EEE-EEETTSEEEEEETTCSSCSEEEEC--------C---CTTCCCEEE-ECCST-TCC-EEEEECTTSEEEEEETTT-T
T ss_pred             EEE-EEeCCCeEEEEECCCCcceeEEec--------C---CCCCEEEEE-EEECC-CCC-EEEEEeCCCEEEEEECCC-C
Confidence            444 466799999999998888877772        3   124566676 98831 344 999999999999999998 8


Q ss_pred             cceeeeeccCCCeeEEEeecCCCce
Q 024245          243 IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +++..+.+|...|.+++|+|+|.+|
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l  243 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPII  243 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            8899999999999999999999765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-30  Score=216.26  Aligned_cols=226  Identities=18%  Similarity=0.299  Sum_probs=175.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +.+..+.+|...|.+++|+|++++|++|+.|+.|++||. +++.+..+..|.  ..|.+++|+|  ++++|++++.|+.|
T Consensus       335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~--dg~~l~~~~~d~~v  409 (577)
T 2ymu_A          335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSP--DGQTIASASDDKTV  409 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSEE
T ss_pred             CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--CCeEEEEECC--CCCEEEEEeCCCEE
Confidence            455678899999999999999999999999999999995 577888888888  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||.. ++.    +..+..+......+.+....... .....+...+|+... + ....+.+|..    ++|+|+++.+
T Consensus       410 ~~~~~~-~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          410 KLWNRN-GQL----LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             EEECTT-CCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEE
T ss_pred             EEEeCC-CCE----EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEE
Confidence            999964 332    23445555544444443322222 222344566777533 2 2334555655    8999999855


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +++.|+.|++||. +++++..+.        +|.    ..+.+++ |+|+   |+ +|++++.||.|++||. + ++
T Consensus       483 a--s~~~d~~i~iw~~-~~~~~~~~~--------~h~----~~v~~l~-~s~d---g~-~l~s~~~dg~v~lwd~-~-~~  540 (577)
T 2ymu_A          483 A--SASDDKTVKLWNR-NGQLLQTLT--------GHS----SSVRGVA-FSPD---GQ-TIASASDDKTVKLWNR-N-GQ  540 (577)
T ss_dssp             E--EEETTSEEEEEET-TSCEEEEEE--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSEEEEECT-T-SC
T ss_pred             E--EEeCCCEEEEEcC-CCCEEEEEe--------CCC----CCEEEEE-EcCC---CC-EEEEEECcCEEEEEeC-C-CC
Confidence            4  5667999999995 588888888        674    4678888 9995   55 8999999999999996 3 78


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++..+.+|.+.|++++|+|||++|.
T Consensus       541 ~~~~~~~h~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          541 LLQTLTGHSSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            8999999999999999999998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=1.2e-30  Score=207.65  Aligned_cols=236  Identities=16%  Similarity=0.186  Sum_probs=179.0

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------eeEEEeecCCCcceEEEEEeeCCC----C--
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIG----L--   76 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~----~--   76 (270)
                      .....+++|.+.|++++|+|  ++|++|+.||.|++||+.+++      .+..+..|.  ..|.+++|+|  +    +  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~~g~~   80 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQ--AIERDAFE   80 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEE--EEETTTEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEec--ccccCCcc
Confidence            46678899999999999998  799999999999999999887      788888888  6699999999  8    8  


Q ss_pred             -CEEEEEeCCCcEEEEEccCCccCCCC-ccceecc-----cceEEEEeec----cCCc--cceecCCCCceEEEecc---
Q 024245           77 -NKVISQGRDGTVKCWDIENGGLSSNP-SLTIKTN-----SYHFCKLSLV----KEPY--ANAKQANEPKDCYEREV---  140 (270)
Q Consensus        77 -~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~---  140 (270)
                       ++|++++.|+.|++||+.+++..... ...+..+     ......+.+.    ....  .......+...+|++..   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence             99999999999999999987641100 2233333     2344444444    2222  22333456778899987   


Q ss_pred             ---Cceee-----ecc------CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCC---c
Q 024245          141 ---GETVD-----TDS------LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN---F  199 (270)
Q Consensus       141 ---~~~~~-----~~~------~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---h  199 (270)
                         .+.+.     ...      ..|..    ++|+|++ . ++ +++.|+.|++||+++++.+..+.        +   |
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~h  229 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IA-TGFNNGTVQISELSTLRPLYNFE--------SQHSM  229 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EE-EECTTSEEEEEETTTTEEEEEEE--------CCC--
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EE-EEeCCCcEEEEECCCCceeEEEe--------ccccc
Confidence               44333     111      22333    8999999 4 43 56779999999999999888887        4   4


Q ss_pred             ccCCCceeeeeeecCCCCCCCceEEEEecCC---CcEEEEEcCCCCcceeeeec-------------cCCCeeEEEeecC
Q 024245          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPGLECSMWRN  263 (270)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~s~~  263 (270)
                      .. ....+.+++ |+|+   +. +|++++.|   |.|++||+++ ++++..+.+             |...|.+++|+|+
T Consensus       230 ~~-~~~~i~~i~-~~~~---~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          230 IN-NSNSIRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             -C-CCCCEEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cc-cCCccceEE-ECCC---CC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCC
Confidence            10 134677887 9995   44 99999999   9999999998 888999998             9999999999999


Q ss_pred             CCcee
Q 024245          264 PITMS  268 (270)
Q Consensus       264 g~~ls  268 (270)
                      +.+|.
T Consensus       303 ~~~l~  307 (397)
T 1sq9_A          303 GETLC  307 (397)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            98764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3e-31  Score=212.41  Aligned_cols=233  Identities=15%  Similarity=0.170  Sum_probs=175.3

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCc------eeEE---EeecCCCcceEEEEEeeCCC-CC
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR------TVSS---SWVHSAAHGIVSVATGPSIG-LN   77 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~---~~~~~~~~~v~~~~~~~~~~-~~   77 (270)
                      +++..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+++      ....   +..|.  ..|.+++|+|  + +.
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~  179 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLAWNQ--SLAH  179 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEEECS--SCTT
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEEeCC--CCCc
Confidence            578889999999999999998 8999999999999999998876      3322   24565  6699999999  7 78


Q ss_pred             EEEEEeCCCcEEEEEccCCccCCCCccceecc------cceEEEEeeccCC--ccceecCCC---CceEEEeccCceeee
Q 024245           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN------SYHFCKLSLVKEP--YANAKQANE---PKDCYEREVGETVDT  146 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~  146 (270)
                      +|++++.|+.|++||+++++...    .+...      ......+.+....  ........+   ...+|++........
T Consensus       180 ~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~  255 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAKKEVI----HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ  255 (416)
T ss_dssp             EEEEESSSSCEEEEETTTTEEEE----EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred             EEEEEcCCCCEEEEECCCCCcce----EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence            99999999999999999876543    33222      2333334443332  223333344   788899998765555


Q ss_pred             ccC-CCCC----eEecC-CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          147 DSL-CDSK----DDVPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       147 ~~~-~~~~----~~~s~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                      .+. +|..    ++|+| ++..++  +++.|+.|++||+++++++..+.        +|.    ..+.+++ |+|++  .
T Consensus       256 ~~~~~~~~~v~~~~~s~~~~~~l~--s~~~dg~v~~wd~~~~~~~~~~~--------~~~----~~v~~~~-~s~~~--~  318 (416)
T 2pm9_A          256 TLNQGHQKGILSLDWCHQDEHLLL--SSGRDNTVLLWNPESAEQLSQFP--------ARG----NWCFKTK-FAPEA--P  318 (416)
T ss_dssp             CCCSCCSSCEEEEEECSSCSSCEE--EEESSSEEEEECSSSCCEEEEEE--------CSS----SCCCCEE-ECTTC--T
T ss_pred             EeecCccCceeEEEeCCCCCCeEE--EEeCCCCEEEeeCCCCccceeec--------CCC----CceEEEE-ECCCC--C
Confidence            666 7766    89999 676444  56679999999999999999988        663    4577787 99953  1


Q ss_pred             ceEEEEecCCCcEEEEEcCCCCcceeee-----------------------------------eccCCCeeEEEeecCCC
Q 024245          221 FVNVLAGYEDGSILVWDIRNPGIPLTAM-----------------------------------KVHLEPGLECSMWRNPI  265 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~s~~g~  265 (270)
                      . +|++++.||.|++||+.+.. .....                                   ..|..++.+++|+|||+
T Consensus       319 ~-~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  396 (416)
T 2pm9_A          319 D-LFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK  396 (416)
T ss_dssp             T-EEEECCSSSEEEEEESCCCC-CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred             C-EEEEEecCCcEEEEEccCCC-CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe
Confidence            4 99999999999999998733 22211                                   11667888999999999


Q ss_pred             cee
Q 024245          266 TMS  268 (270)
Q Consensus       266 ~ls  268 (270)
                      +|.
T Consensus       397 ~la  399 (416)
T 2pm9_A          397 LVQ  399 (416)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=7.2e-30  Score=203.69  Aligned_cols=245  Identities=15%  Similarity=0.166  Sum_probs=174.7

Q ss_pred             CcccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEe-------------ecCCCcceEEEEEeeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPSI   74 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~   74 (270)
                      +....+++|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.             +|.  ..|.+++|+|. 
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~-  110 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYPH-  110 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECTT-
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEccC-
Confidence            45677889999999999999 99999999999999999999876655443             355  67999999983 


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC----ccceecCCCCceEEEeccCceeeeccCC
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP----YANAKQANEPKDCYEREVGETVDTDSLC  150 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (270)
                      ++++|++++.|+.|++||+.+++...    .+. .......+......    ........+...+|++..++.+. .+.+
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~  184 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTAD----VFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQG  184 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEE----EEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccce----ecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecC
Confidence            34689999999999999999886543    222 12222222222211    22334445677889998776554 3445


Q ss_pred             CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc-eeeeeccCcCC---CCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCG---GSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       151 ~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~---~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                      |..    ++|+|+++++++ +++.||.|++||++++. .+..+......   ............+.+++ |+|+   ++ 
T Consensus       185 ~~~~v~~~~~~~~~~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---~~-  258 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC-FTSD---GL-  258 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE-ECTT---SS-
T ss_pred             CCCcEEEEEECCCCCcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE-EcCC---CC-
Confidence            555    899999987665 56679999999998776 44444210000   00000012345688888 9995   44 


Q ss_pred             EEEEecCCCcEEEEEcCCCC----------------------------------------------cceeeeeccCCCee
Q 024245          223 NVLAGYEDGSILVWDIRNPG----------------------------------------------IPLTAMKVHLEPGL  256 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~----------------------------------------------~~~~~~~~~~~~v~  256 (270)
                      +|++++.||.|++||+++..                                              +++..+.+|...|+
T Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~  338 (408)
T 4a11_B          259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD  338 (408)
T ss_dssp             EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence            99999999999999987622                                              34566778999999


Q ss_pred             EEEeecCCCcee
Q 024245          257 ECSMWRNPITMS  268 (270)
Q Consensus       257 ~~~~s~~g~~ls  268 (270)
                      +++|+|++.+|.
T Consensus       339 ~~~~s~~~~~l~  350 (408)
T 4a11_B          339 CCVFQSNFQELY  350 (408)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEcCCCCEEE
Confidence            999999998763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.9e-30  Score=196.52  Aligned_cols=230  Identities=14%  Similarity=0.178  Sum_probs=176.6

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.++++++++|.+.|++++| |++.+|++|+.||.|++||+.+++....+..|.  ..|.+++|+|  ++++|++++.|+
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~dg   81 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDS--EKELLLFGGKDT   81 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS--SCEEEEEEET--TTTEEEEEETTS
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--ccEEEEEECC--CCCEEEEecCCC
Confidence            34788999999999999999 999999999999999999999999898898887  6699999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC-CCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGP  161 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~-~~~  161 (270)
                      .|++|++...... .+...+..+......+.+.. .........+...+|+   .......+..|..    ++|.| ++.
T Consensus        82 ~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (313)
T 3odt_A           82 MINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSEN  156 (313)
T ss_dssp             CEEEEETTCCTTS-CC-CEECCCSSCEEEEEEET-TEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred             eEEEEEeeecCCC-CcccchhhcccCEEEEEecC-CEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCC
Confidence            9999999865422 23445555655565555532 2223334455566777   3333334445555    67777 666


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      .++  +++.|+.|++||.  .+....+..       .|    ...+.+++ |+|+   +  .+++++.||.|++||+++ 
T Consensus       157 ~l~--~~~~d~~i~i~d~--~~~~~~~~~-------~~----~~~i~~~~-~~~~---~--~~~~~~~dg~i~i~d~~~-  214 (313)
T 3odt_A          157 KFL--TASADKTIKLWQN--DKVIKTFSG-------IH----NDVVRHLA-VVDD---G--HFISCSNDGLIKLVDMHT-  214 (313)
T ss_dssp             EEE--EEETTSCEEEEET--TEEEEEECS-------SC----SSCEEEEE-EEET---T--EEEEEETTSEEEEEETTT-
T ss_pred             EEE--EEECCCCEEEEec--CceEEEEec-------cC----cccEEEEE-EcCC---C--eEEEccCCCeEEEEECCc-
Confidence            544  4566899999993  455556652       13    44677887 9984   4  489999999999999999 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++++..+.+|...|++++|+|++.+++
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~~l~~  241 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNGDIVS  241 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred             hhhhhhhhcCCceEEEEEEecCCCEEE
Confidence            889999999999999999999997655

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=9.4e-31  Score=208.20  Aligned_cols=220  Identities=15%  Similarity=0.094  Sum_probs=144.2

Q ss_pred             cccccccccccEEEEEEeC--------CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCC-CEEE
Q 024245           10 PVAVLRGHRASVTDVCFHQ--------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVI   80 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~   80 (270)
                      ++..+.||++.|++++|+|        ++++||+|+.|++|+|||+.++.++..+..|.  .+|.+++|+|  ++ ++|+
T Consensus       128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p--~~~~~l~  203 (393)
T 4gq1_A          128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRP--SNPNQLI  203 (393)
T ss_dssp             EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEET--TEEEEEE
T ss_pred             eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC--CCcEEEEECC--CCCceEE
Confidence            4567899999999999998        78899999999999999999888888887787  6699999999  65 4799


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      +++.|++|++||+++++............  ....+.........                   .....+|..    +.|
T Consensus       204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~--~~~~~s~~~~~~~~-------------------~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          204 VGERNGNIRIFDWTLNLSAEENSQTELVK--NPWLLTLNTLPLVN-------------------TCHSSGIASSLANVRW  262 (393)
T ss_dssp             EEETTSEEEEEETTCCC----------CS--CCCSEEEESGGGC-------------------------CCSSSCSEEEE
T ss_pred             ecCCCCEEEEEECCCCcccccccccCCcc--cceEEeccccccee-------------------eeecccccccceeeee
Confidence            99999999999999876533111110000  11111111111100                   001122322    556


Q ss_pred             c-CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC--------------CCceeeeeeecCCCCCCCc
Q 024245          157 P-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--------------GRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       157 s-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~--------------~~~~~~~~~~~~p~~~~g~  221 (270)
                      + +++..++  +++.|+++++||+..++....+.        .|...              ......... |.|.  .+.
T Consensus       263 ~~~dg~~l~--s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~  329 (393)
T 4gq1_A          263 IGSDGSGIL--AMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLLPNVQGISLFPSLLGAC-PHPR--YMD  329 (393)
T ss_dssp             ETTTTCEEE--EECTTSEEEEEEC---------------------------CCSCSEEEECSSCCSSCCE-ECSS--CTT
T ss_pred             ecCCCCEEE--EEeCCCCEEEEECccCCCCceEe--------eecCccccEEEccccccccccCcceeEE-EccC--CCC
Confidence            5 7887654  56779999999999877665554        22111              011222333 5553  233


Q ss_pred             eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .++++|+.||.|++||+.+ +++...+.+|..+|++++|+|||++|.
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             EEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            3888999999999999998 777788888999999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.3e-31  Score=213.74  Aligned_cols=231  Identities=12%  Similarity=0.121  Sum_probs=161.2

Q ss_pred             CCccccc-ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCC---Cc---eeEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245            8 PDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (270)
Q Consensus         8 ~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~---~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (270)
                      .+++..+ ++|.+.|++++|+| ++++|++|+.||.|+|||+.+   +.   ....+ .|.  ..|.+++|+|  ++++|
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~--~~v~~~~~~~--~~~~l  126 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS--STVTQITMIP--NFDAF  126 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS--SCEEEEEECT--TSSEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC--CCEEEEEEeC--CCCEE
Confidence            3567778 89999999999999 999999999999999999976   43   23233 366  6699999999  99999


Q ss_pred             EEEeCCCcEEEEEcc---CCccCCCCccceecc------------cceEEEEeeccCCcc---ceecCCCCceEEEeccC
Q 024245           80 ISQGRDGTVKCWDIE---NGGLSSNPSLTIKTN------------SYHFCKLSLVKEPYA---NAKQANEPKDCYEREVG  141 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  141 (270)
                      ++++.||.|++||++   +++...    ....+            ......+.....+..   ......+...+|++...
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  202 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVK----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL  202 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEE----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCEEEEEEeccccCCceee----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            999999999999995   443321    11111            111112221122222   22333456778999887


Q ss_pred             ceeeeccCC-CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245          142 ETVDTDSLC-DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (270)
Q Consensus       142 ~~~~~~~~~-~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (270)
                      +.+...... |..    ++|+|++..++  +|+.||.|++||+++++++..+..       +|    ...+.+++ |+|.
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~  268 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGIIDIWDIRFNVLIRSWSF-------GD----HAPITHVE-VCQF  268 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEEBC-------TT----CEEEEEEE-ECTT
T ss_pred             eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeEEEEEcCCccEEEEEec-------CC----CCceEEEE-eccc
Confidence            766543331 433    89999987554  566799999999999999888763       23    33567774 5543


Q ss_pred             C-CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          217 K-SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       217 ~-~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      - +++. +|++|+.||.|++||+++ ++++..+.+|...+..+.|+|+
T Consensus       269 ~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  314 (437)
T 3gre_A          269 YGKNSV-IVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPI  314 (437)
T ss_dssp             TCTTEE-EEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCB
T ss_pred             cCCCcc-EEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceeccc
Confidence            1 2455 999999999999999998 7777777765444443333333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=2e-30  Score=220.43  Aligned_cols=231  Identities=18%  Similarity=0.241  Sum_probs=173.9

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      +.+.+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|.  ..|.+++|+|  ++++|++++.|++|+
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDVLSVAFSL--DNRQIVSASRDRTIK  497 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCEE
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC--CCEEEEEEeC--CCCEEEEEeCCCEEE
Confidence            456789999999999999999999999999999999999999999999998  6699999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCC---ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~  162 (270)
                      +||+....... .......+......+.+....   ........+.+.+|++...+... .+.+|..    ++|+|+++.
T Consensus       498 iwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          498 LWNTLGECKYT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-TLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EECTTSCEEEE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSE
T ss_pred             EEECCCCccee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEeCCCCE
Confidence            99986543211 001112233334444443332   22334456678889998776543 5667766    899999985


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++  +|+.|+.|++||+++++.+..+.        .     ...+.+++ |+|+   +. +|+++ .|+.|++||+++ +
T Consensus       576 l~--sg~~Dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~sp~---~~-~l~~~-~~~~i~iwd~~~-~  633 (694)
T 3dm0_A          576 CA--SGGKDGVVLLWDLAEGKKLYSLE--------A-----NSVIHALC-FSPN---RY-WLCAA-TEHGIKIWDLES-K  633 (694)
T ss_dssp             EE--EEETTSBCEEEETTTTEEEECCB--------C-----SSCEEEEE-ECSS---SS-EEEEE-ETTEEEEEETTT-T
T ss_pred             EE--EEeCCCeEEEEECCCCceEEEec--------C-----CCcEEEEE-EcCC---Cc-EEEEE-cCCCEEEEECCC-C
Confidence            44  57779999999999999887776        2     23577787 9995   43 55555 466799999998 7


Q ss_pred             cceeeeeccC-------------------CCeeEEEeecCCCcee
Q 024245          243 IPLTAMKVHL-------------------EPGLECSMWRNPITMS  268 (270)
Q Consensus       243 ~~~~~~~~~~-------------------~~v~~~~~s~~g~~ls  268 (270)
                      +.+..+..+.                   ..+++++|+|||.+|.
T Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~  678 (694)
T 3dm0_A          634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF  678 (694)
T ss_dssp             EEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred             CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence            7666654321                   1378999999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=5.1e-30  Score=213.60  Aligned_cols=227  Identities=17%  Similarity=0.260  Sum_probs=165.7

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+.|+||++.|++++|+|||++||+|+.|+.|+|||. ++++++.+.+|.  ..|.+++|+|  ++++|++++.|++|+
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~--~~V~~l~fsp--dg~~las~~~d~~i~   82 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKTVK   82 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEE
T ss_pred             EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCC--CCEEEEEECC--CCCEEEEEeCCCEEE
Confidence            34569999999999999999999999999999999995 688999999998  6699999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCc--------------------------
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGE--------------------------  142 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------------  142 (270)
                      +||+.. +.    +..+..+......+.+........ .........|+.....                          
T Consensus        83 vWd~~~-~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  157 (577)
T 2ymu_A           83 LWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA  157 (577)
T ss_dssp             EEETTS-CE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEECCC-CE----EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceec
Confidence            999643 32    234444444444333332221111 1112222223221110                          


Q ss_pred             -------------eeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCc
Q 024245          143 -------------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG  205 (270)
Q Consensus       143 -------------~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~  205 (270)
                                   ........+..    +.++|+++.++  +++.|+.|++||. +++.+..+.        +|.    .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~v~~w~~-~~~~~~~~~--------~~~----~  222 (577)
T 2ymu_A          158 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA--SASDDKTVKLWNR-NGQLLQTLT--------GHS----S  222 (577)
T ss_dssp             ETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECT-TSCEEEEEE--------CCS----S
T ss_pred             ccccceeccccceeeeeeccCCCcceeeeeecCCCCEEE--EEcCCCEEEEEeC-CCcEEEEEe--------cCC----C
Confidence                         00011122222    78899998654  5667999999996 477777777        563    4


Q ss_pred             eeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+.+++ |+|+   ++ +|++++.|+.|++||..  ++.+..+.+|...|++++|+|++..|.
T Consensus       223 ~v~~~~-~s~d---g~-~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~  278 (577)
T 2ymu_A          223 SVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIA  278 (577)
T ss_dssp             CEEEEE-ECTT---SS-CEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEE-ECCC---CC-EEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEE
Confidence            577887 9995   54 89999999999999965  678889999999999999999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2e-30  Score=207.67  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=175.8

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC----CceeEEEeecCCCcceEEEEEeeCCC-CCEEEEEeC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGR   84 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~   84 (270)
                      ++..+ .|...|++++|+|++.+|++|+.||.|++||+.+    .+.+..+..|.  ..|.+++|+|  + +++|++++.
T Consensus        60 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~~l~s~~~  134 (416)
T 2pm9_A           60 PIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNA--KQDNVLASGGN  134 (416)
T ss_dssp             CSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS--SCCCEEEECS--SSTTBEEEECS
T ss_pred             EEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc--cceEEEEEcC--CCCCEEEEEcC
Confidence            33334 5889999999999999999999999999999987    35777888887  6699999999  7 789999999


Q ss_pred             CCcEEEEEccCCc------cCCCCccceecccceEEEEeeccC--CccceecCCCCceEEEeccCceeeeccCC-----C
Q 024245           85 DGTVKCWDIENGG------LSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLC-----D  151 (270)
Q Consensus        85 d~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  151 (270)
                      |+.|++||+.+++      .... ......+......+.+...  .........+...+|++...+.+......     |
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  213 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTPLT-PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI  213 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCCBC-CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred             CCeEEEEECCCCccccccccccc-cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence            9999999999876      2110 1112233333333333332  22333345667888999887765543322     1


Q ss_pred             CC----eEecCCCCeEEEEecCCCc---eEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLS---EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~---~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      ..    ++|+|++..+++ +++.|+   .|++||++++ .++..+..       +|    ...+.+++ |+|.  +++ +
T Consensus       214 ~~~v~~~~~~~~~~~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~--~~~-~  277 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVA-TATGSDNDPSILIWDLRNANTPLQTLNQ-------GH----QKGILSLD-WCHQ--DEH-L  277 (416)
T ss_dssp             CCCEEEEEECSSCTTEEE-EEECCSSSCCCCEEETTSTTSCSBCCCS-------CC----SSCEEEEE-ECSS--CSS-C
T ss_pred             CCceEEEEECCCCCCEEE-EEECCCCCceEEEEeCCCCCCCcEEeec-------Cc----cCceeEEE-eCCC--CCC-e
Confidence            22    899999876665 455677   9999999986 45555441       23    45688888 9983  344 9


Q ss_pred             EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC-Cce
Q 024245          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP-ITM  267 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l  267 (270)
                      |++++.||.|++||+++ ++++..+.+|...|++++|+|++ .+|
T Consensus       278 l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             EEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             EEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEE
Confidence            99999999999999999 88999999999999999999998 554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.5e-29  Score=200.58  Aligned_cols=230  Identities=13%  Similarity=0.186  Sum_probs=177.7

Q ss_pred             ccccccc-ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ....+.. |...|++++|+|++.+|++|+.||.|++||+.+++.+..+..|.  ..|.+++|++    +.|++++.||.|
T Consensus       125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~----~~l~~~~~dg~i  198 (401)
T 4aez_A          125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--ARVGCLSWNR----HVLSSGSRSGAI  198 (401)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEEET----TEEEEEETTSEE
T ss_pred             EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC--CceEEEEECC----CEEEEEcCCCCE
Confidence            3444444 88999999999999999999999999999999999999999888  6699999965    799999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||++....   ....+..+......+.+....... .....+...+|++...+.... +..|..    ++|+|++..+
T Consensus       199 ~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          199 HHHDVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             EEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTSTTE
T ss_pred             EEEecccCcc---eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCCCCE
Confidence            9999985432   233555565555555555433322 233356778899988765543 334444    9999999888


Q ss_pred             EEEe-cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE--ecCCCcEEEEEcCC
Q 024245          164 MAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--~~~dg~i~vwd~~~  240 (270)
                      ++++ |+.|+.|++||+++++.+..+..             ...+.+++ |+|+   ++ +|++  |+.||.|++||+.+
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~-~s~~---~~-~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDA-------------GSQVTSLI-WSPH---SK-EIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEECTTTCEEEEEEEET
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEE-ECCC---CC-eEEEEeecCCCcEEEEecCC
Confidence            7744 34799999999999999888872             33578887 9995   44 6777  56899999999998


Q ss_pred             CCcce--eeeeccCCCeeEEEeecCCCcee
Q 024245          241 PGIPL--TAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       241 ~~~~~--~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       ++..  ..+.+|...|++++|+|+|.+|.
T Consensus       337 -~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          337 -SGLTKQVDIPAHDTRVLYSALSPDGRILS  365 (401)
T ss_dssp             -TEEEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred             -ccceeEEEecCCCCCEEEEEECCCCCEEE
Confidence             4433  34678999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=8.4e-30  Score=199.99  Aligned_cols=204  Identities=17%  Similarity=0.267  Sum_probs=160.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|.  ..|.+++|+|..++++|++++.||+|
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~Dg~v  222 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCDKKA  222 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred             ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC--CCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence            3456778899999999999999999999999999999999999999999998  56999999884456899999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccC-CCC-C---eEecCCCCe
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSL-CDS-K---DDVPAEGPK  162 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---~~~s~~~~~  162 (270)
                      ++||++++++..    .+..+......+.+...... ......+...+||+...+.+..... .+. .   ++|+|++..
T Consensus       223 ~~wd~~~~~~~~----~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  298 (354)
T 2pbi_B          223 MVWDMRSGQCVQ----AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL  298 (354)
T ss_dssp             EEEETTTCCEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCcEEE----EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence            999999986543    55555555554444433322 2333456678899987765443221 111 1   899999985


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ++  +|+.|+.|++||+.+++.+..+.        +|.    ..+.+++ |+|+   |+ +|++|+.||+|++|+
T Consensus       299 l~--~g~~d~~i~vwd~~~~~~~~~l~--------~h~----~~v~~l~-~spd---g~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          299 LF--AGYNDYTINVWDVLKGSRVSILF--------GHE----NRVSTLR-VSPD---GT-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EE--EEETTSCEEEEETTTCSEEEEEC--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSEEEEEC
T ss_pred             EE--EEECCCcEEEEECCCCceEEEEE--------CCC----CcEEEEE-ECCC---CC-EEEEEcCCCCEEecC
Confidence            54  56679999999999999988888        774    4688888 9995   55 999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=5.9e-30  Score=202.98  Aligned_cols=232  Identities=13%  Similarity=0.138  Sum_probs=165.6

Q ss_pred             CCcccccccccccEEEEEEeCCC-CEEEEecCCCcEEEEeCCCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .++...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+..  |.  ..|.+++|+|. ++++|++++.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~~  139 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG--DAITGMKFNQF-NTNQLFVSSI  139 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT--CBEEEEEEETT-EEEEEEEEET
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC--CceeEEEeCCC-CCCEEEEEeC
Confidence            35677889999999999999998 8999999999999999998888877764  55  77999999983 2478999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      |+.|++||+++.....  .............+.+...... ......+...+|++. ++ ....+.+|..    ++|+|+
T Consensus       140 d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          140 RGATTLRDFSGSVIQV--FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             TTEEEEEETTSCEEEE--EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSS
T ss_pred             CCEEEEEECCCCceEE--EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCC
Confidence            9999999998643211  1111111223333333332222 223334566778884 33 3334455655    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCC----cceeeeeccCcCCCCCCcccCCCceeeeeeecCC-CCCCCceEEEEecCCCcEE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~~~~dg~i~  234 (270)
                      ++.+++ +++.|+.|++||+++    +.++..+.         |    ...+.+++ |+| +   +. +|++++.||.|+
T Consensus       216 ~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~----~~~v~~~~-~s~~~---~~-~l~~~~~d~~i~  276 (383)
T 3ei3_B          216 CDWLMA-TSSVDATVKLWDLRNIKDKNSYIAEMP---------H----EKPVNAAY-FNPTD---ST-KLLTTDQRNEIR  276 (383)
T ss_dssp             CTTEEE-EEETTSEEEEEEGGGCCSTTCEEEEEE---------C----SSCEEEEE-ECTTT---SC-EEEEEESSSEEE
T ss_pred             CCCEEE-EEeCCCEEEEEeCCCCCcccceEEEec---------C----CCceEEEE-EcCCC---CC-EEEEEcCCCcEE
Confidence            985555 566799999999998    44555543         3    45788888 999 5   44 999999999999


Q ss_pred             EEEcCCCCcceeeeeccC-----------------CCeeEEEeecCCCc
Q 024245          235 VWDIRNPGIPLTAMKVHL-----------------EPGLECSMWRNPIT  266 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~s~~g~~  266 (270)
                      +||+++ ++....+.+|.                 ..+..++|+|||++
T Consensus       277 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~  324 (383)
T 3ei3_B          277 VYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL  324 (383)
T ss_dssp             EEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT
T ss_pred             EEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc
Confidence            999998 66666666553                 23444677776655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.8e-30  Score=205.63  Aligned_cols=241  Identities=13%  Similarity=0.166  Sum_probs=176.0

Q ss_pred             CcccccccccccEEEEEEeCC----C---CEEEEecCCCcEEEEeCCCCce-----eEEEeecCC---CcceEEEEEe--
Q 024245            9 DPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSA---AHGIVSVATG--   71 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~---~~~v~~~~~~--   71 (270)
                      +++..+.+|...|++++|+|+    +   .+|++++.||.|++||+.+++.     ...+..|..   ...|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            467888999999999999999    9   9999999999999999998886     778877731   1669999999  


Q ss_pred             --eCCCCCE-EEEEeCCCcEEEEEccC------CccCC-CCcccee-------cccceEEEEeeccCCccceecCCCCce
Q 024245           72 --PSIGLNK-VISQGRDGTVKCWDIEN------GGLSS-NPSLTIK-------TNSYHFCKLSLVKEPYANAKQANEPKD  134 (270)
Q Consensus        72 --~~~~~~~-l~s~~~d~~i~~wd~~~------~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (270)
                        |  ++++ |++++.||.|++||+++      ++... .+...+.       .+......+.+............+...
T Consensus       133 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~  210 (397)
T 1sq9_A          133 NDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ  210 (397)
T ss_dssp             C------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEE
T ss_pred             cCC--CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEE
Confidence              8  8899 99999999999999998      54322 1111232       123333333333333222233345677


Q ss_pred             EEEeccCceeeeccCC---C---CC----eEecCCCCeEEEEecCCC---ceEEEEeCCCcceeeeeccCcCC-----CC
Q 024245          135 CYEREVGETVDTDSLC---D---SK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCG-----GS  196 (270)
Q Consensus       135 ~~~~~~~~~~~~~~~~---~---~~----~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~-----~~  196 (270)
                      +|++...+.+.. +..   |   ..    ++|+|++..++  +++.|   +.|++||+++++.+..+......     ..
T Consensus       211 i~d~~~~~~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~--~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          211 ISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             EEECCCCceeEE-EeccccccccCCccceEEECCCCCEEE--EEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            789887765543 333   4   33    89999998655  45568   99999999999988888720000     00


Q ss_pred             CCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee------cc---------------CCCe
Q 024245          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK------VH---------------LEPG  255 (270)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~---------------~~~v  255 (270)
                      ..|    ...+.+++ |+|+   ++ +|++++.||.|++||+++ ++++..+.      +|               ...|
T Consensus       288 ~~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v  357 (397)
T 1sq9_A          288 FAH----SSWVMSLS-FNDS---GE-TLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  357 (397)
T ss_dssp             BSB----SSCEEEEE-ECSS---SS-EEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             ccc----CCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCce
Confidence            004    34678888 9995   44 999999999999999999 88899998      88               9999


Q ss_pred             eEEEeecCC
Q 024245          256 LECSMWRNP  264 (270)
Q Consensus       256 ~~~~~s~~g  264 (270)
                      ++++|+|+|
T Consensus       358 ~~~~~~~~g  366 (397)
T 1sq9_A          358 FDVKFLKKG  366 (397)
T ss_dssp             EEEEEECTT
T ss_pred             eEEEecccc
Confidence            999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-29  Score=196.58  Aligned_cols=235  Identities=11%  Similarity=0.089  Sum_probs=182.3

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--   85 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--   85 (270)
                      .+++..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +.  ..|.+++|+|  ++++|++++.+  
T Consensus        64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~v~~~~~~~--~~~~l~~~~~~~~  138 (369)
T 3zwl_B           64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP--VPVKRVEFSP--CGNYFLAILDNVM  138 (369)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS--SCEEEEEECT--TSSEEEEEECCBT
T ss_pred             chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC--CCeEEEEEcc--CCCEEEEecCCcc
Confidence            36778899999999999999999999999999999999999999998887 54  6699999999  99999999998  


Q ss_pred             ---CcEEEEEccCCccCC-------CCccceecccc--eEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCC
Q 024245           86 ---GTVKCWDIENGGLSS-------NPSLTIKTNSY--HFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDS  152 (270)
Q Consensus        86 ---~~i~~wd~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (270)
                         +.|++||+.......       .+...+..+..  ....+.+...... ......+...+|++.........+..|.
T Consensus       139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence               999999998775432       11122222222  2333333322222 2223345677899988555555565565


Q ss_pred             C----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec
Q 024245          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (270)
Q Consensus       153 ~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~  228 (270)
                      .    ++|+|++..++  +++.|+.|++||+++++.+..+..             ...+..+. |+|+   ++ ++++++
T Consensus       219 ~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---~~-~l~~~~  278 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTLQVLKKYET-------------DCPLNTAV-ITPL---KE-FIILGG  278 (369)
T ss_dssp             SCEEEEEECTTSSEEE--EEETTSEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEE
T ss_pred             CceeEEEECCCCCEEE--EecCCceEEEEECCCCceeeeecC-------------CCCceeEE-ecCC---Cc-eEEEee
Confidence            5    89999998665  455689999999999998888872             34577777 9995   44 888888


Q ss_pred             CCC--------------cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          229 EDG--------------SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       229 ~dg--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .++              .+++||+.+ ++++..+.+|...|++++|+|++.+|.
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~  331 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQGTSYA  331 (369)
T ss_dssp             CCC-------------CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEEEEEECCCCCEEE
Confidence            888              899999999 889999999999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=201.84  Aligned_cols=240  Identities=12%  Similarity=0.124  Sum_probs=170.2

Q ss_pred             CCCCCCCCCcccccccccccEEEEEEeCCCC-EEEEecC---CCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCC
Q 024245            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTT---GGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIG   75 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~   75 (270)
                      |.....|......+++|...|++++|+|++. ++++|+.   |+.|++||+.+++...... .|.  ..|.+++|+|  +
T Consensus         1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~--~   76 (357)
T 3i2n_A            1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGA--T   76 (357)
T ss_dssp             ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTT--C
T ss_pred             CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcC--C
Confidence            5555555445566788999999999999886 5566766   9999999999887665443 565  6699999999  7


Q ss_pred             ---CCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeec----cCCcc---ceecCCCCceEEEeccCceee
Q 024245           76 ---LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV----KEPYA---NAKQANEPKDCYEREVGETVD  145 (270)
Q Consensus        76 ---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~  145 (270)
                         +++|++++.||.|++||+.+++   .+...+..+......+...    +.+..   ......+...+|++...+...
T Consensus        77 ~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           77 SLQQRYLATGDFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             CTTTCCEEEEETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred             CCCCceEEEecCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence               6999999999999999999876   1234555555555544332    22332   223345567889988776333


Q ss_pred             eccCCCC---C-----eE----ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeec
Q 024245          146 TDSLCDS---K-----DD----VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY  213 (270)
Q Consensus       146 ~~~~~~~---~-----~~----~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  213 (270)
                      ..+..+.   .     ++    |+|++..++  +++.|+.|++||+++++......         |    ...+.++. |
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~---------~----~~~v~~~~-~  217 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETN---------I----KNGVCSLE-F  217 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEE---------C----SSCEEEEE-E
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecC---------C----CCceEEEE-c
Confidence            3332222   1     44    778997554  46678999999999988755543         3    34678887 9


Q ss_pred             CCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-----ccCCCeeEEEeecCCC
Q 024245          214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPGLECSMWRNPI  265 (270)
Q Consensus       214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~  265 (270)
                      +|...++. +|++++.||.|++||+++ +++...+.     +|...|++++|+|++.
T Consensus       218 ~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          218 DRKDISMN-KLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             SCSSSSCC-EEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             CCCCCCCC-EEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCC
Confidence            98322344 899999999999999998 66655554     8999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.4e-29  Score=193.47  Aligned_cols=213  Identities=15%  Similarity=0.228  Sum_probs=156.8

Q ss_pred             Cccccc--ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC--------------------------
Q 024245            9 DPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS--------------------------   60 (270)
Q Consensus         9 ~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------------------------   60 (270)
                      ++++++  .+|...|++++|+|++++|++|+.||.|++||+++++++..+.+|.                          
T Consensus        56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD  135 (318)
T ss_dssp             CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence            445544  4688899999999999999999999999999999887766554332                          


Q ss_pred             -------------CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc-cce
Q 024245           61 -------------AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANA  126 (270)
Q Consensus        61 -------------~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  126 (270)
                                   +...+..+.+.+  ++++|++++.|++|++||+++++.......................... ...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence                         114477778888  8899999999999999999987654433333333333333333332222 222


Q ss_pred             ecCC---CCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc
Q 024245          127 KQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS  201 (270)
Q Consensus       127 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~  201 (270)
                      ...+   ....+|+................  +.|+|++..+++++|+.|+.|+|||+++++++.++.        +|. 
T Consensus       214 ~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH~-  284 (318)
T 4ggc_A          214 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GHT-  284 (318)
T ss_dssp             EEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCS-
T ss_pred             EEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CCC-
Confidence            2222   34566777766655443333322  889999999988888889999999999999999998        784 


Q ss_pred             CCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                         ..+.+++ |+|+   |+ +|++|+.||+|+|||+.+
T Consensus       285 ---~~V~~l~-~spd---g~-~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          285 ---SRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ---SCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred             ---CCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence               4688888 9995   55 899999999999999976

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.3e-30  Score=203.99  Aligned_cols=222  Identities=13%  Similarity=0.187  Sum_probs=172.7

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      +|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|.  ..|.+++|+|  ++++|++++.|+.|++||+.+
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNK--DGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECT--TSSEEEEEETTCCEEEEETTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECC--CCCEEEEEecCCeEEEEECCC
Confidence            3788999999999999999999999999999 6678888888888  6699999999  999999999999999999988


Q ss_pred             CccCCCCccceecccce---------------EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEe
Q 024245           96 GGLSSNPSLTIKTNSYH---------------FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (270)
                      ++...    .+......               ...+.+............+...+|++...+.+.. +.+|..    ++|
T Consensus       181 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~i~~~~~  255 (425)
T 1r5m_A          181 GTVMQ----HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK-LIGHHGPISVLEF  255 (425)
T ss_dssp             TEEEE----EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE-ECCCSSCEEEEEE
T ss_pred             CcEEE----EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee-eccCCCceEEEEE
Confidence            76543    22221111               2222222223333344456677788887755443 344544    899


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      +|+++.++  +++.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +  +|++++.||.|++|
T Consensus       256 ~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          256 NDTNKLLL--SASDDGTLRIWHGGNGNSQNCFY--------GH----SQSIVSAS-WVGD---D--KVISCSMDGSVRLW  315 (425)
T ss_dssp             ETTTTEEE--EEETTSCEEEECSSSBSCSEEEC--------CC----SSCEEEEE-EETT---T--EEEEEETTSEEEEE
T ss_pred             CCCCCEEE--EEcCCCEEEEEECCCCccceEec--------CC----CccEEEEE-ECCC---C--EEEEEeCCCcEEEE
Confidence            99998554  45678999999999999888887        55    34677887 9984   4  79999999999999


Q ss_pred             EcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          237 DIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |+++ ++++..+..|...|.+++|+|++.+|.
T Consensus       316 d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          316 SLKQ-NTLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             ETTT-TEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             ECCC-CcEeEecccCCccEEEEEEcCCCCEEE
Confidence            9998 888999999999999999999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-30  Score=222.38  Aligned_cols=238  Identities=14%  Similarity=0.120  Sum_probs=171.5

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.  .+|.+++|+|..++++|++++.||.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCCCEEEEEeCCCeE
Confidence            46789999999999999999999999999999999998  456777888887  66999999982228999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccC--C-ccceecCCCCceEEEeccCce-eeeccCCCCC----eEecCC-
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--P-YANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAE-  159 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~s~~-  159 (270)
                      ++||+.+++...  ......+......+.+...  . ........+...+|++..... ....+.+|..    ++|+|. 
T Consensus        80 ~vwd~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           80 LIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEECCCCcccc--cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            999999875321  3344445555554444443  2 223344456677899887632 2233445554    889994 


Q ss_pred             ------------CCeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          160 ------------GPKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       160 ------------~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                                  +..++  +|+.||.|++||++++.    ....+.        +|    ...+.+++ |+|+...+. +
T Consensus       158 ~~~~~~~~~~~d~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~~~~--------~h----~~~V~~l~-~sp~~~~~~-~  221 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFV--TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-Y  221 (753)
T ss_dssp             ---------CGGGCCEE--EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-E
T ss_pred             cccccccccCCCCCEEE--EEECCCeEEEEeccCCcccceeeeeec--------CC----CCcEEEEE-eccCCCCCC-E
Confidence                        65444  56679999999998774    445555        55    44688888 999621155 9


Q ss_pred             EEEecCCCcEEEEEcCCCCc----ceeeeeccCCCeeEEEeecCCCcee
Q 024245          224 VLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |++|+.||.|++||+++...    .......|...|++++|+|+|.+|.
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  270 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  270 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE
Confidence            99999999999999998321    3344456889999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.1e-29  Score=206.33  Aligned_cols=223  Identities=17%  Similarity=0.243  Sum_probs=177.9

Q ss_pred             CcccccccccccE-EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .....+++|...| .++.+  ++.+|++|+.||.|++||+.+++.+..+.+|.  ..|.+++|+|  ++ .|++++.||+
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~--~~-~l~s~s~dg~  184 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAH--GG-ILVSGSTDRT  184 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECS--TT-EEEEEETTSC
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcC--CC-EEEEEeCCCC
Confidence            4567899998885 66666  46799999999999999999999999999998  6699999998  75 9999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCc---cceecCCCCceEEEeccCcee--------------------
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETV--------------------  144 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------------  144 (270)
                      |++||+++++...    .+..+......+.+...+.   .......+...+|++......                    
T Consensus       185 i~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          185 VRVWDIKKGCCTH----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             EEEEETTTTEEEE----EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             EEEEECCCCcEEE----EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            9999999886543    5555555555555554332   233444566778988766533                    


Q ss_pred             --eeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCC
Q 024245          145 --DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       145 --~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (270)
                        ...+.+|..  .++++++..++  +++.|+.|++||+++++++..+.        +|.    ..+.+++ |+|+   +
T Consensus       261 ~~~~~~~~~~~~v~~~~~~~~~l~--~~~~d~~i~vwd~~~~~~~~~~~--------~~~----~~v~~~~-~~~~---~  322 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GHT----DRIYSTI-YDHE---R  322 (464)
T ss_dssp             TEEEEECCCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-EETT---T
T ss_pred             EEEEEccCccceEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CCC----CCEEEEE-EcCC---C
Confidence              234556666  67788887655  46679999999999999999888        663    4678887 9995   4


Q ss_pred             ceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      . +|++|+.||.|++||+++ ++++..+.+|...|.+++|++
T Consensus       323 ~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~  362 (464)
T 3v7d_B          323 K-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD  362 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS
T ss_pred             C-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC
Confidence            4 999999999999999999 899999999999999999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=3.2e-30  Score=207.56  Aligned_cols=233  Identities=14%  Similarity=0.160  Sum_probs=176.8

Q ss_pred             cccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCC----------CceeEEEeecCCCcceEEEEEeeCCCCC-EE
Q 024245           12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLN-KV   79 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l   79 (270)
                      ....+|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+.+|.  ..|.+++|+|  ++. +|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~--~~~~~l  197 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNP--NLNGYL  197 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECT--TSTTEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCC--CCCCeE
Confidence            456679999999999997 77999999999999999986          56777888888  5699999999  777 99


Q ss_pred             EEEeCCCcEEEEEccCCccCC---CCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCc--eeeeccCCCC
Q 024245           80 ISQGRDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGE--TVDTDSLCDS  152 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  152 (270)
                      ++++.||.|++||+.++....   .+...+..+......+.+..  ..........+.+.+|+++...  .....+..|.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            999999999999998743211   11223334444444444443  2222333446677889998763  2333344555


Q ss_pred             C----eEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       153 ~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      .    ++|+|+++++++ +|+.||.|++||+++ +.++..+.        +|    ...+.++. |+|+   ++.+|+++
T Consensus       278 ~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~--------~h----~~~v~~i~-~sp~---~~~~l~s~  340 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFE--------SH----KDEIFQVQ-WSPH---NETILASS  340 (430)
T ss_dssp             SCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------CC----SSCEEEEE-ECSS---CTTEEEEE
T ss_pred             CCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEee--------cC----CCCEEEEE-ECCC---CCCEEEEE
Confidence            5    899999987776 566799999999998 55677777        56    44688888 9995   33389999


Q ss_pred             cCCCcEEEEEcCCCC-------------cceeeeeccCCCeeEEEeecCCC
Q 024245          228 YEDGSILVWDIRNPG-------------IPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      +.||.|++||+...+             +.+..+.+|...|++++|+|++.
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence            999999999998632             56677788999999999999998

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.3e-28  Score=191.58  Aligned_cols=223  Identities=13%  Similarity=0.213  Sum_probs=169.9

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|.  ..|.+++|+|  ++++|++++.|+.|++||+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISP--DSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC--CceEEEEECC--CCCEEEEEeCCCcEEEEeC
Confidence            799999999999999999999999999999999877  555666676  6699999999  9999999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCC
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~  170 (270)
                      ++++...    .+..+......+.+....... .....+...+|++..++...........  ++|+|+++.++  +++.
T Consensus       171 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~  244 (337)
T 1gxr_A          171 HNQTLVR----QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGME  244 (337)
T ss_dssp             TTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE--EEET
T ss_pred             CCCceee----eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE--EEcC
Confidence            9876533    444444444444444333222 2333556778998887765543211111  89999998665  3556


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      |+.|++||+++++.. .+.        +|    ...+.++. |+|+   ++ +|++++.||.|++||+.+ ++.+... .
T Consensus       245 ~~~i~~~~~~~~~~~-~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~~~~~~~-~~~~~~~-~  304 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKY-QLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQS-K  304 (337)
T ss_dssp             TSCEEEEETTSSCEE-EEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCEEEEE-E
T ss_pred             CCcEEEEECCCCCeE-EEc--------CC----ccceeEEE-ECCC---CC-EEEEecCCCcEEEEECCC-CeEEEEe-c
Confidence            899999999987754 344        44    34678887 9995   44 899999999999999998 6666444 4


Q ss_pred             cCCCeeEEEeecCCCcee
Q 024245          251 HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~~ls  268 (270)
                      |...|.+++|+|++.+|.
T Consensus       305 ~~~~v~~~~~s~~~~~l~  322 (337)
T 1gxr_A          305 ESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             CSSCEEEEEECTTSCEEE
T ss_pred             CCCcEEEEEECCCCCEEE
Confidence            788999999999998763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=3.7e-29  Score=191.78  Aligned_cols=212  Identities=18%  Similarity=0.223  Sum_probs=154.1

Q ss_pred             CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      +++.++.+|.+.|++++|++  ++++|++|+.|++|+|||+++++  .+..+..|.  ..|.+++|+|...+.+|++++.
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s~  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVASS  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEEC
Confidence            57789999999999999986  48999999999999999998874  555667777  6699999999212789999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccC--------------CccceecCCCCceEEEeccCce---eeec
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--------------PYANAKQANEPKDCYEREVGET---VDTD  147 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~~  147 (270)
                      |++|++||++++....  ...+..+......+.+...              .........+.+.+|++...+.   ....
T Consensus       122 d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~  199 (297)
T 2pm7_B          122 DGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (297)
T ss_dssp             TSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence            9999999998764221  2334444444443333322              1222334456778899887652   3446


Q ss_pred             cCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcce--e-eeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAER--C-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       148 ~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~~--~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      +.+|..    ++|+|++  ..+++ +++.|++|+|||++....  . ..+...      +|    ...+++++ |+|+  
T Consensus       200 l~~H~~~V~~v~~sp~~~~~~~la-s~s~D~~v~iWd~~~~~~~~~~~~~~~~------~~----~~~v~~~~-~s~~--  265 (297)
T 2pm7_B          200 LEGHSDWVRDVAWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEE------KF----PDVLWRAS-WSLS--  265 (297)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSS------CC----SSCEEEEE-ECSS--
T ss_pred             ecCCCCceEEEEECCCCCCceEEE-EEECCCcEEEEEeCCCCCccceeeeecc------cC----CCcEEEEE-ECCC--
Confidence            778877    8999996  34554 677899999999986431  1 222100      23    45688888 9995  


Q ss_pred             CCceEEEEecCCCcEEEEEcCC
Q 024245          219 QGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                       |+ +|++++.||.|++|+...
T Consensus       266 -g~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          266 -GN-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             -SC-CEEEEETTSCEEEEEECT
T ss_pred             -CC-EEEEEcCCCcEEEEEECC
Confidence             55 899999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=8.9e-29  Score=200.99  Aligned_cols=233  Identities=13%  Similarity=0.174  Sum_probs=178.6

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+++..+.+|.+.|++++|+|++ +|++|+.||.|++||+++++.+..+.+|.  ..|.+++|++..++++|++++.|++
T Consensus       152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCc
Confidence            35778899999999999999988 99999999999999999999999999888  6699999996447789999999999


Q ss_pred             EEEEEccCCccCCCC-------------------ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc
Q 024245           88 VKCWDIENGGLSSNP-------------------SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS  148 (270)
Q Consensus        88 i~~wd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (270)
                      |++||++++......                   ......+......++... .........+...+|++.+.+.+. .+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~-~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLY-IL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEE-EE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE-Ee
Confidence            999999887543210                   112223333333333222 122333445677889998776655 44


Q ss_pred             CCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          149 LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       149 ~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                      .+|..    ++|+|+++.++  +|+.|+.|++||+++++++.++.        +|.    ..+.++. |++.      +|
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~------~l  365 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHT----ALVGLLR-LSDK------FL  365 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECSS------EE
T ss_pred             cCCCCCEEEEEEcCCCCEEE--EEeCCCcEEEEECCCCcEEEEEe--------CCC----CcEEEEE-EcCC------EE
Confidence            55655    89999998655  56679999999999999999998        663    4577777 8753      99


Q ss_pred             EEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       225 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++|+.||.|++||+++ ........ +...+..++|+|++.+|.
T Consensus       366 ~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~  407 (464)
T 3v7d_B          366 VSAAADGSIRGWDAND-YSRKFSYH-HTNLSAITTFYVSDNILV  407 (464)
T ss_dssp             EEEETTSEEEEEETTT-CCEEEEEE-CTTCCCEEEEEECSSEEE
T ss_pred             EEEeCCCcEEEEECCC-Cceeeeec-CCCCccEEEEEeCCCEEE
Confidence            9999999999999998 55544443 567788899999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2e-29  Score=217.83  Aligned_cols=232  Identities=17%  Similarity=0.173  Sum_probs=185.1

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.+..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.  ..|.+++|+|  ++.+|++++.||.
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~  120 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLT  120 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSE
T ss_pred             CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEEEEEEeC--CCCEEEEEcCCCE
Confidence            35678888999999999999999999999999999999999999999999888  6699999999  9999999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeecc-C-CccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--C
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-E-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--E  159 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~  159 (270)
                      |++||+.++...   ...+..+......+.+.. . .........+...+|++............+..    ++|+|  +
T Consensus       121 i~vw~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (814)
T 3mkq_A          121 VKLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD  197 (814)
T ss_dssp             EEEEEGGGTSEE---EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT
T ss_pred             EEEEECCCCceE---EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC
Confidence            999999876321   223444444444444433 1 12233344566778998776655544444422    89998  7


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +..++  +++.||.|++||+++++.+..+.        +|    ...+.+++ |+|+   ++ +|++++.||.|++||+.
T Consensus       198 ~~~l~--~~~~dg~i~~~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          198 KPYMI--TASDDLTIKIWDYQTKSCVATLE--------GH----MSNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             CCEEE--EECTTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCEEEEETT
T ss_pred             CCEEE--EEeCCCEEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EcCC---CC-EEEEEeCCCeEEEEECC
Confidence            77554  56679999999999999988888        56    34677887 9995   44 99999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      + ++.+..+..|...+.+++|+|+|..
T Consensus       259 ~-~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          259 T-YKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             T-CSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             C-CcEEEEeecCCCcEEEEEEccCCCc
Confidence            8 8889999999999999999999873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=3.9e-29  Score=194.50  Aligned_cols=225  Identities=16%  Similarity=0.187  Sum_probs=170.9

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEe--ecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..+|...|++++|+|++++|++++ ||.|++||+.+++.   +..+.  .|.  ..|.+++|+|  ++++|++++.|+.|
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i  121 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGEASTL  121 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEESSSEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC--CcEEEEEEcC--CCCEEEEEcCCCcE
Confidence            347999999999999999999999 99999999987653   33444  455  6799999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~  163 (270)
                      ++||+++++...  ...+..+......+.+...... ......+...+|++..++... .+.+|..    ++|+|+++.+
T Consensus       122 ~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          122 SIWDLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEECCCC--EE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEECCCCCcce--eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eeecccCceEEEEECCCCCEE
Confidence            999999876321  3344444444444444433322 233345677889998876554 3444554    8999999865


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +++.|+.|++||+++++.+..+.             ....+.+++ |+|+   ++ +|++++.||.|++||+++ .+
T Consensus       199 ~--~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~v~~~~-~s~~---~~-~l~~~~~~~~i~~~~~~~-~~  257 (337)
T 1gxr_A          199 W--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVNK-PD  257 (337)
T ss_dssp             E--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTS-SC
T ss_pred             E--EEecCCcEEEEECCCCceEeeec-------------CCCceEEEE-ECCC---CC-EEEEEcCCCcEEEEECCC-CC
Confidence            5  45569999999999998887776             234577887 9995   44 999999999999999997 44


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       ...+..|...|.+++|+|++.+|.
T Consensus       258 -~~~~~~~~~~v~~~~~~~~~~~l~  281 (337)
T 1gxr_A          258 -KYQLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             -eEEEcCCccceeEEEECCCCCEEE
Confidence             356778999999999999998763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=4.4e-29  Score=224.49  Aligned_cols=241  Identities=12%  Similarity=0.161  Sum_probs=186.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ....+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.  ..|.+++|+|  ++++|++++.|+.|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSS--DDSYIATCSADKKVK  682 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEec--CCCEEEEEeCCCeEE
Confidence            345678999999999999999999999999999999999999999999888  6699999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCe
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~  162 (270)
                      +||+.+++...    .+..+......+.+......   ......+...+|++.+++... .+.+|..    ++|+|+++.
T Consensus       683 vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          683 IWDSATGKLVH----TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             EEETTTCCEEE----EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECSSTTE
T ss_pred             EEECCCCceEE----EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEecCCCE
Confidence            99999986543    55566555555555443232   233345667889998887655 4456665    899999985


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCC-------------------CC------------------------c
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------------------PN------------------------F  199 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------------~~------------------------h  199 (270)
                      ++  +++.||.|++||+++++....+........                   .+                        .
T Consensus       758 l~--s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~  835 (1249)
T 3sfz_A          758 LA--SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI  835 (1249)
T ss_dssp             EE--EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EE--EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence            54  566799999999998876655432110000                   00                        0


Q ss_pred             ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .......+.+++ |+|+   +. ++++++.||.|++||+.+ +..+..+.+|...|++++|+|+|.+|
T Consensus       836 ~~~~~~~v~~~~-~sp~---~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l  897 (1249)
T 3sfz_A          836 HTGHHSTIQYCD-FSPY---DH-LAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSF  897 (1249)
T ss_dssp             ECSSSSCCCEEE-ECSS---TT-EEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cCCCCCceEEEE-EcCC---CC-EEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEE
Confidence            001234566676 8885   44 999999999999999998 88899999999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=6.8e-30  Score=206.45  Aligned_cols=235  Identities=15%  Similarity=0.203  Sum_probs=166.0

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----------eeEEEeecCCC----------cceEEEEEeeCCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAA----------HGIVSVATGPSIG   75 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~~~~~~   75 (270)
                      |.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|..+          ..|.+++|+|  +
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--Q  104 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--C
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--C
Confidence            67899999999999999999999999999998776           47778888622          5599999999  7


Q ss_pred             C--CEEEEEeCCCcEEEEEccCCccCC----------------------CCc-------------cc-eecccceEEEEe
Q 024245           76 L--NKVISQGRDGTVKCWDIENGGLSS----------------------NPS-------------LT-IKTNSYHFCKLS  117 (270)
Q Consensus        76 ~--~~l~s~~~d~~i~~wd~~~~~~~~----------------------~~~-------------~~-~~~~~~~~~~~~  117 (270)
                      +  .+|++++.|++|++||+.++....                      .+.             .. ...+......+.
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            6  789999999999999997643210                      000             00 122333333333


Q ss_pred             eccCCccceecCCCCceEEEeccCceeee-------ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce--
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGETVDT-------DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--  184 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~--  184 (270)
                      +............+...+|++........       .+.+|..    ++|+|++..+++ +|+.||.|++||+++++.  
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV-YSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE-EEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE-EEeCCCeEEEEECcCCcccc
Confidence            33333333333456677788884433222       3556665    899999844444 566799999999999886  


Q ss_pred             --eeeeccCcCCCCCCcccC--------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          185 --CTRLHQNSCGGSPNFSSK--------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       185 --~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                        +..+.        +|...        ....+.+++ |+|+   |+ +|++++. +.|++||+++.++++..+.+|...
T Consensus       264 ~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          264 RHSKLFE--------EPEDPSNRSFFSEIISSISDVK-FSHS---GR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             TTCEEEC--------CC-----CCHHHHHTTCEEEEE-ECTT---SS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred             ceeeEec--------cCCCccccccccccCceEEEEE-ECCC---CC-EEEEeeC-CeEEEEeCCCCccccceeeccccc
Confidence              66776        44221        012688888 9994   55 8999998 999999999767888899888642


Q ss_pred             ---------------eeEEEeecCCCcee
Q 024245          255 ---------------GLECSMWRNPITMS  268 (270)
Q Consensus       255 ---------------v~~~~~s~~g~~ls  268 (270)
                                     +..++|+|+|.+|.
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~  358 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVM  358 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEE
T ss_pred             cccccccccccccccceEEEECCCCCEEE
Confidence                           23499999998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=3.1e-29  Score=202.07  Aligned_cols=240  Identities=12%  Similarity=0.084  Sum_probs=167.7

Q ss_pred             cccccccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+..+.+|.+.|++|+|+| ++.+|++|+.||+|++||++++........+.....+.+++|+|  ++++|++|+.||.|
T Consensus       156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i  233 (435)
T 4e54_B          156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNV  233 (435)
T ss_dssp             EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBE
T ss_pred             eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcE
Confidence            4556779999999999998 78899999999999999998765544444444335688999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeee--ccCCCCC----eEecCCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDT--DSLCDSK----DDVPAEG  160 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~s~~~  160 (270)
                      ++||++...     +..+..+...+..+.+.....  .......+.+.+||+...+....  ...+|..    ++|+|+|
T Consensus       234 ~~wd~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg  308 (435)
T 4e54_B          234 ILLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG  308 (435)
T ss_dssp             EEEESSSCB-----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS
T ss_pred             eeeccCcce-----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC
Confidence            999997543     224445555555444443322  22334456788899987664433  3345655    8899999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC--CceeeeeeecCCCCC--------CCceEEEEecCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--RGMCMAVQAYLPSKS--------QGFVNVLAGYED  230 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~p~~~--------~g~~~l~~~~~d  230 (270)
                      .+++  +++.|+.|+|||+++++....+.        +|....  ...+.... |+|.+.        ++..+++++..+
T Consensus       309 ~~l~--s~~~D~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~  377 (435)
T 4e54_B          309 ARLL--TTDQKSEIRVYSASQWDCPLGLI--------PHPHRHFQHLTPIKAA-WHPRYNLIVVGRYPDPNFKSCTPYEL  377 (435)
T ss_dssp             SEEE--EEESSSCEEEEESSSSSSEEEEC--------CCCCCCCSSSCCCBCE-ECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred             CeeE--EEcCCCEEEEEECCCCccceEEe--------cccccccccceeEEEE-EcCCCCEEEEEEcCCCCeEEEEecCC
Confidence            8654  56679999999999998877776        343211  11223333 665321        111122222345


Q ss_pred             CcEEEEEcCCCCcceeee-eccCCCeeEE-EeecCCCcee
Q 024245          231 GSILVWDIRNPGIPLTAM-KVHLEPGLEC-SMWRNPITMS  268 (270)
Q Consensus       231 g~i~vwd~~~~~~~~~~~-~~~~~~v~~~-~~s~~g~~ls  268 (270)
                      +.|++||..+ ++.+..+ .+|...|.++ +|+|+|.+|.
T Consensus       378 ~~i~iwd~~~-g~~~~~l~~~~~~~v~s~~~fspdg~~la  416 (435)
T 4e54_B          378 RTIDVFDGNS-GKMMCQLYDPESSGISSLNEFNPMGDTLA  416 (435)
T ss_dssp             CCEEEECSSS-CCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred             CEEEEEECCC-CcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence            6899999999 6766665 4688889987 6999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=199.73  Aligned_cols=244  Identities=9%  Similarity=-0.003  Sum_probs=177.7

Q ss_pred             ccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ...+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+..+.....|.+++|+|  ++++|++++.|+.|+
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDVY  174 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcEE
Confidence            345688899999999999986 899999999999999  888888887443336799999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccC---C-ccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---P-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      +|++.++.....+...+..+......+.+...   . ........+.+.+|++..++.+...+.+|..    ++|+ ++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence            99998876542233344555544444444433   2 2233344567788999988877766777776    8999 887


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCC---CCCCcc----------cCCCceeeeeeecCCCCCCCceEEEEec
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG---GSPNFS----------SKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~h~----------~~~~~~~~~~~~~~p~~~~g~~~l~~~~  228 (270)
                      +++  +++.|+.|++||+++++++..+......   ....|.          ......+.++. |+|+   ++ +|++++
T Consensus       254 ~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~---~~-~l~~~~  326 (450)
T 2vdu_B          254 LLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII-KSKN---LP-FVAFFV  326 (450)
T ss_dssp             EEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE-ECSS---SS-EEEEEE
T ss_pred             EEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE-EeCC---CC-EEEEEE
Confidence            554  5667999999999999988877621000   000000          01234567777 9984   55 777777


Q ss_pred             -CCCcEEEEEc--CCCC---cceeeeeccCCCeeEEEeecCCCcee
Q 024245          229 -EDGSILVWDI--RNPG---IPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       229 -~dg~i~vwd~--~~~~---~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                       .|+.|++||+  .. +   +.+..+..| ..|.+++|+|++.+++
T Consensus       327 ~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          327 EATKCIIILEMSEKQ-KGDLALKQIITFP-YNVISLSAHNDEFQVT  370 (450)
T ss_dssp             TTCSEEEEEEECSSS-TTCEEEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEeccCC-CCceeeccEeccC-CceEEEEecCCcEEEE
Confidence             8999999999  44 4   567778887 8899999999877665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.5e-29  Score=198.60  Aligned_cols=225  Identities=14%  Similarity=0.111  Sum_probs=159.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~   87 (270)
                      +++.++++|...|++++|+|+|++|++|+.++ ++|||+..++.......+    .+..+++.+  +++.+ ++++.|++
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~d~~   82 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLH--RTNYVAFVTGVKEV   82 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECT--TSSEEEEECSSTTE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcC--CCCEEEEEECCccE
Confidence            45667889999999999999999999998876 889999877666544322    377788887  66766 57788899


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccC-ceeeeccCCCCC-eEecCCCCeEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-ETVDTDSLCDSK-DDVPAEGPKYMA  165 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~s~~~~~~~~  165 (270)
                      |++||+.+++...    .+.. ......+  ...+............+|++... +.+.. +..... +++++  ..+++
T Consensus        83 v~iWd~~~~~~~~----~~~~-~~~v~~v--~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           83 VHIWDDVKKQDVS----RIKV-DAPVKDL--FLSREFIVVSYGDVISVFKFGNPWKRITD-DIRFGGVCEFSN--GLLVY  152 (355)
T ss_dssp             EEEEETTTTEEEE----EEEC-SSCEEEE--EECSSEEEEEETTEEEEEESSTTCCBSSC-CEEEEEEEEEET--TEEEE
T ss_pred             EEEEECCCCcEEE----EEEC-CCceEEE--EEcCCEEEEEEcCEEEEEECCCCceeeEE-eccCCceEEEEc--cEEEE
Confidence            9999999887543    3332 2223323  33444445555667888998877 43332 222222 67777  44544


Q ss_pred             EecCCCceEEEEeCCCcc----------------eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          166 VAGEQLSEVEIWDLNTAE----------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                      ++|+.||.|++||+++++                .+..+.        +|    ...+.+++ |+|+   |+ +|++|+.
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~h----~~~v~~~~-~s~~---g~-~l~s~s~  215 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--------AH----TNPIKMVR-LNRK---SD-MVATCSQ  215 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEET
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--------cc----CCceEEEE-ECCC---CC-EEEEEeC
Confidence            338889999999999765                155666        67    44688888 9995   55 9999999


Q ss_pred             CCc-EEEEEcCCCCcceeeee-c-cCCCeeEEEeecCCCcee
Q 024245          230 DGS-ILVWDIRNPGIPLTAMK-V-HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       230 dg~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~ls  268 (270)
                      ||+ |++||+++ ++++..+. + |...|++++|+|||.+|.
T Consensus       216 d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~  256 (355)
T 3vu4_A          216 DGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLA  256 (355)
T ss_dssp             TCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEE
T ss_pred             CCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEE
Confidence            998 99999999 88888898 5 999999999999998864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=5.1e-29  Score=194.21  Aligned_cols=230  Identities=19%  Similarity=0.268  Sum_probs=175.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+.+++++|...|++++|+|++++|++|+.|+.|++|+............+.  ..+..+.+++  ++++|++++.|+.+
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~~  152 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSS--DNRQIVSGSRDKTI  152 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCE
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC--CceeEEEEee--cCccceeecCCCeE
Confidence            3567889999999999999999999999999999999999988888777776  5588999999  88999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccc---eecCCCCceEEEeccCceeeeccCCCCC----eEecCCCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~  161 (270)
                      ++||+......   ......+........+.......   .........+|++...+.+. .+.+|..    ++|+|+++
T Consensus       153 ~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          153 KLWNTLGVCKY---TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             EEECTTSCEEE---EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSS
T ss_pred             EEEEeCCCceE---EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-EecCCCCcEEEEEECCCCC
Confidence            99998765432   12223333333334443333222   23334567788988876554 4556665    89999998


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      .++  +|+.|+.|++||+++.+.+..+.        ++     ..+.++. |+|+   +  .+++++.|+.|++||+++ 
T Consensus       229 ~l~--s~s~Dg~i~iwd~~~~~~~~~~~--------~~-----~~v~~~~-~~~~---~--~~~~~~~d~~i~iwd~~~-  286 (340)
T 4aow_A          229 LCA--SGGKDGQAMLWDLNEGKHLYTLD--------GG-----DIINALC-FSPN---R--YWLCAATGPSIKIWDLEG-  286 (340)
T ss_dssp             EEE--EEETTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-ECSS---S--SEEEEEETTEEEEEETTT-
T ss_pred             EEE--EEeCCCeEEEEEeccCceeeeec--------CC-----ceEEeee-cCCC---C--ceeeccCCCEEEEEECCC-
Confidence            554  56679999999999999988887        33     3567777 9984   3  466777899999999987 


Q ss_pred             Ccceeee---------eccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAM---------KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~---------~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..+..+         .+|...|++++|+|||++|-
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             TEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            5544443         46888999999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=8.8e-29  Score=198.44  Aligned_cols=231  Identities=16%  Similarity=0.239  Sum_probs=173.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ....+.+| ..+....|++++++|++|+.||.|++||+.+++....+..|.  ..|.+++|+|  ++++|++++.|+.|+
T Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~d~~i~  164 (420)
T 3vl1_A           90 GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV--SEITKLKFFP--SGEALISSSQDMQLK  164 (420)
T ss_dssp             TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred             eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc--CccEEEEECC--CCCEEEEEeCCCeEE
Confidence            34455555 455566789999999999999999999999998888888888  6699999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCC--C---------------
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLC--D---------------  151 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------  151 (270)
                      +||+++++...    .+..+......+.+...... ......+...+|++.+++.+......  +               
T Consensus       165 iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          165 IWSVKDGSNPR----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             EEETTTCCCCE----EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             EEeCCCCcCce----EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence            99999886543    55666655555555443332 23334566788999887755433210  0               


Q ss_pred             ------CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          152 ------SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       152 ------~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                            ..    ++|+|+++.++  +++.||.|++||+++++.+..+..       +|    ...+.+++ |+|+   ++
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~---~~  303 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHNVFSKEQTIQLPS-------KF----TCSCNSLT-VDGN---NA  303 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEETTTCCEEEEECC-------TT----SSCEEEEE-ECSS---CT
T ss_pred             eeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEECCCCceeEEccc-------cc----CCCceeEE-EeCC---CC
Confidence                  11    77889997554  466799999999999988877763       34    45688888 9995   33


Q ss_pred             eEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM  267 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  267 (270)
                      .+|++|+.||.|++||++++..++..+.. |...|+++.|. ++.+|
T Consensus       304 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l  349 (420)
T 3vl1_A          304 NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALF  349 (420)
T ss_dssp             TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEE
Confidence            38999999999999999985566888887 56778888555 55443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.7e-29  Score=199.00  Aligned_cols=224  Identities=13%  Similarity=0.078  Sum_probs=172.4

Q ss_pred             ccccccc--EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           14 LRGHRAS--VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        14 ~~~h~~~--v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+|...  +.+++|++  ..+++++.|+.|++||+.+++....+.. |.  ..|.+++|+|  ++++|++++.||.|++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~l~~~~~dg~i~i  160 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES--TYVASVKWSH--DGSFLSVGLGNGLVDI  160 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT--CCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC--CCEEEEEECC--CCCEEEEECCCCeEEE
Confidence            3467665  44566664  5678888999999999999998887776 44  6799999999  9999999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~  166 (270)
                      ||+.+++...    .+..+......+.+.. .........+...+|++.........+.+|..    ++|+|++..++  
T Consensus       161 wd~~~~~~~~----~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--  233 (401)
T 4aez_A          161 YDVESQTKLR----TMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA--  233 (401)
T ss_dssp             EETTTCCEEE----EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--
T ss_pred             EECcCCeEEE----EecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEE--
Confidence            9999886543    5555555555555532 23333444566778999866665666667766    89999997554  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec--CCCcEEEEEcCCCCcc
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIP  244 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~--~dg~i~vwd~~~~~~~  244 (270)
                      +++.|+.|++||+++++.+..+.        +|    ...+.+++ |+|+   +..++++|+  .|+.|++||+++ +++
T Consensus       234 s~~~d~~v~iwd~~~~~~~~~~~--------~~----~~~v~~~~-~~p~---~~~ll~~~~gs~d~~i~i~d~~~-~~~  296 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSIPKFTKT--------NH----NAAVKAVA-WCPW---QSNLLATGGGTMDKQIHFWNAAT-GAR  296 (401)
T ss_dssp             EEETTSCEEEEETTCSSEEEEEC--------CC----SSCCCEEE-ECTT---STTEEEEECCTTTCEEEEEETTT-CCE
T ss_pred             EEeCCCeEEEccCCCCCccEEec--------CC----cceEEEEE-ECCC---CCCEEEEecCCCCCEEEEEECCC-CCE
Confidence            56679999999999999888887        55    34677787 9995   322777765  899999999998 788


Q ss_pred             eeeeeccCCCeeEEEeecCCCcee
Q 024245          245 LTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +..+. +...|.+++|+|++.+|.
T Consensus       297 ~~~~~-~~~~v~~~~~s~~~~~l~  319 (401)
T 4aez_A          297 VNTVD-AGSQVTSLIWSPHSKEIM  319 (401)
T ss_dssp             EEEEE-CSSCEEEEEECSSSSEEE
T ss_pred             EEEEe-CCCcEEEEEECCCCCeEE
Confidence            88886 567899999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=4e-29  Score=196.82  Aligned_cols=199  Identities=11%  Similarity=0.032  Sum_probs=139.9

Q ss_pred             cccccEEEEEEeCCCCEEE--EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           16 GHRASVTDVCFHQTKPILF--AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      .+...+.+++|||||++++  +++.|++|+|||+++++++..+. |.  ..|.+++|+|  +|++|++++.+ .+.+|+.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~--~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~  204 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TR--GEVKDLHFST--DGKVVAYITGS-SLEVIST  204 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CS--SCCCEEEECT--TSSEEEEECSS-CEEEEET
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CC--CceEEEEEcc--CCceEEeccce-eEEEEEe
Confidence            3456789999999999875  55679999999999999988876 44  5599999999  99999999855 5677777


Q ss_pred             cCCccCCCCccceecccceEEEEeec--cCCccceecCCC---CceEEEeccCcee---eeccCCCCC----eEecCCCC
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYANAKQANE---PKDCYEREVGETV---DTDSLCDSK----DDVPAEGP  161 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~----~~~s~~~~  161 (270)
                      .+++...  ......+...+..+.+.  ..........+.   ....|++......   ...+.+|..    ++|+|+|+
T Consensus       205 ~~~~~~~--~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          205 VTGSCIA--RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE  282 (365)
T ss_dssp             TTCCEEE--EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred             ccCccee--eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence            7665432  11222233333333222  222222222222   2344666554432   234455555    89999998


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +++  +|+.|++|+|||+++++++.++..       +|.    ..+++++ |+|+   |+ +|++|+.|++|+|||+..
T Consensus       283 ~la--sgs~D~~V~iwd~~~~~~~~~~~~-------gH~----~~V~~v~-fSpd---g~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          283 LAV--LASNDNSIALVKLKDLSMSKIFKQ-------AHS----FAITEVT-ISPD---ST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEE--EEETTSCEEEEETTTTEEEEEETT-------SSS----SCEEEEE-ECTT---SC-EEEEEETTSEEEEEECCT
T ss_pred             ceE--EEcCCCEEEEEECCCCcEEEEecC-------ccc----CCEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC
Confidence            543  677899999999999999988643       774    4788998 9995   55 999999999999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=196.25  Aligned_cols=230  Identities=17%  Similarity=0.192  Sum_probs=168.0

Q ss_pred             cccccEEEEEEeCC---CCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEE------eeCCCCCEEEEEeCC
Q 024245           16 GHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT------GPSIGLNKVISQGRD   85 (270)
Q Consensus        16 ~h~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~d   85 (270)
                      +|...|++++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|.  ..|.++.|      +|  ++++|++++.|
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~--~~~~l~~~~~d  138 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGE--GAPEIVTGSRD  138 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC---CCCEEEEEETT
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCC--CccEEEEEeCC
Confidence            79999999999998   6999999999999999999887 888888888  66999965      56  88999999999


Q ss_pred             CcEEEEEccCCccCCCCccceeccc------ceEEEEeeccCCccce---ecCCCCceEEEeccCceeeeccCCCCC---
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNS------YHFCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK---  153 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---  153 (270)
                      +.|++||+++++.   +...+..+.      .....+.+.+.+....   ....+...+|++...+....  ..|..   
T Consensus       139 ~~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~  213 (357)
T 3i2n_A          139 GTVKVWDPRQKDD---PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVC  213 (357)
T ss_dssp             SCEEEECTTSCSS---CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEE
T ss_pred             CeEEEEeCCCCCC---cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceE
Confidence            9999999998762   122332211      1122222223333322   22345677899888776433  22333   


Q ss_pred             -eEecC---CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          154 -DDVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       154 -~~~s~---~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                       ++|+|   ++..++  +++.||.|++||+++++....+....   ..+|    ...+.+++ |+|+   ++.+|++|+.
T Consensus       214 ~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~----~~~v~~~~-~~~~---~~~~l~~~~~  280 (357)
T 3i2n_A          214 SLEFDRKDISMNKLV--ATSLEGKFHVFDMRTQHPTKGFASVS---EKAH----KSTVWQVR-HLPQ---NRELFLTAGG  280 (357)
T ss_dssp             EEEESCSSSSCCEEE--EEESTTEEEEEEEEEEETTTEEEEEE---EECC----SSCEEEEE-EETT---EEEEEEEEET
T ss_pred             EEEcCCCCCCCCEEE--EECCCCeEEEEeCcCCCcccceeeec---cCCC----cCCEEEEE-ECCC---CCcEEEEEeC
Confidence             89999   787655  45668999999999877665543100   0023    45788888 9994   4447999999


Q ss_pred             CCcEEEEEcCCCC------------------cceeeeeccCCCeeEEEeecCCCce
Q 024245          230 DGSILVWDIRNPG------------------IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       230 dg~i~vwd~~~~~------------------~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ||.|++||++++.                  +++..+.+|...|++++|+|+|.+|
T Consensus       281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            9999999998632                  3567788999999999999999876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=207.00  Aligned_cols=227  Identities=13%  Similarity=0.041  Sum_probs=164.8

Q ss_pred             cccccccccEEEEEEeCC------CCEEEEecCCCcEEEEeCCCCce-----------eEEEeecCCCcceEEEEEeeCC
Q 024245           12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRT-----------VSSSWVHSAAHGIVSVATGPSI   74 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~   74 (270)
                      .++.+|.+.|++++|+|+      +.+||+|+.||+|+|||+.++..           ...+.+|.  ..|.+++|++  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--~~v~sv~~s~--  276 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLS--  276 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--TCEEEEEESS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC--CCEEEEEecC--
Confidence            346778899999999996      57999999999999999986642           23566777  6699999998  


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc----cceecCCCCceEEEeccCceeeec---
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY----ANAKQANEPKDCYEREVGETVDTD---  147 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---  147 (270)
                      + ..|++|+.||+|++||++++..   +...+..+...+..+...+.+.    .......+...+||+++.+.....   
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence            6 5899999999999999997642   2344566666665553333333    233344566788998876543321   


Q ss_pred             cCC-CC-CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          148 SLC-DS-KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       148 ~~~-~~-~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      ... .. .++|+|+++.++  +++.|++|++||++++.++.++.        +|    ...+++++ |+|+   |+ +|+
T Consensus       353 ~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~--------gH----~~~V~sva-~Sp~---g~-~l~  413 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLV--------SR----ETTITAIG-VSRL---HP-MVL  413 (524)
T ss_dssp             CSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEE--------EC----SSCEEEEE-CCSS---CC-BCE
T ss_pred             cccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeee--------cC----CCceEEEE-eCCC---CC-eEE
Confidence            111 11 289999998644  45668999999999999888887        66    44788998 9995   55 899


Q ss_pred             EecCCCcEEEEEcCCCCcceeeeec-----cCCCeeEEEeecCCCce
Q 024245          226 AGYEDGSILVWDIRNPGIPLTAMKV-----HLEPGLECSMWRNPITM  267 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l  267 (270)
                      +|+.||+|++||+.. + .+..++.     +...|++++|+|+|..+
T Consensus       414 Sgs~Dgtv~lwd~~~-~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          414 AGSADGSLIITNAAR-R-LLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             EEETTTEEECCBSCS-S-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             EEECCCEEEEEechH-h-hccccccCccceeeeEEEEeccCCCCCeE
Confidence            999999999999875 2 3333221     11247799999988643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-28  Score=197.98  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=179.2

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcc---------------eEEEEEee
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG---------------IVSVATGP   72 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------v~~~~~~~   72 (270)
                      .+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.  ..               +.+++|+|
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  216 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVD  216 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------------CCCBSCCEEEE
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcC
Confidence            35677888999999999999999999999999999999999999988887765  44               89999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCC
Q 024245           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        73 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (270)
                        + ..+++++.|+.|++||+++++..    ..+..+......+.+...... ......+...+|++...+.... +.+|
T Consensus       217 --~-~~~~~~~~~g~i~~~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~  288 (425)
T 1r5m_A          217 --D-DKFVIPGPKGAIFVYQITEKTPT----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-FYGH  288 (425)
T ss_dssp             --T-TEEEEECGGGCEEEEETTCSSCS----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-ECCC
T ss_pred             --C-CEEEEEcCCCeEEEEEcCCCcee----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-ecCC
Confidence              7 67899999999999999987543    344445444444444433322 2333356677888887665443 3444


Q ss_pred             CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      ..    ++|+|++ . ++ +++.|+.|++||+++++.+..+.        .|    ...+.+++ |+|+   ++ +|+++
T Consensus       289 ~~~i~~~~~~~~~-~-l~-~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~s~~---~~-~l~~~  348 (425)
T 1r5m_A          289 SQSIVSASWVGDD-K-VI-SCSMDGSVRLWSLKQNTLLALSI--------VD----GVPIFAGR-ISQD---GQ-KYAVA  348 (425)
T ss_dssp             SSCEEEEEEETTT-E-EE-EEETTSEEEEEETTTTEEEEEEE--------CT----TCCEEEEE-ECTT---SS-EEEEE
T ss_pred             CccEEEEEECCCC-E-EE-EEeCCCcEEEEECCCCcEeEecc--------cC----CccEEEEE-EcCC---CC-EEEEE
Confidence            44    8999999 3 33 45669999999999999888887        45    34677887 9995   44 99999


Q ss_pred             cCCCcEEEEEcCCCCc--------------------ceeeeeccCC--CeeEEEeecCCCce
Q 024245          228 YEDGSILVWDIRNPGI--------------------PLTAMKVHLE--PGLECSMWRNPITM  267 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~g~~l  267 (270)
                      +.||.|++||+++ ++                    ++..+.+|..  .|++++|+|++.+|
T Consensus       349 ~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  409 (425)
T 1r5m_A          349 FMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI  409 (425)
T ss_dssp             ETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred             ECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence            9999999999998 56                    7888999976  99999999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.5e-28  Score=194.95  Aligned_cols=234  Identities=9%  Similarity=0.024  Sum_probs=164.7

Q ss_pred             cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecC-CCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      +.+|...|.+++|+| ++.+|++++.|+.|++||+.+ ..+..+..+. ....|.+++|+|  ++++|++++.|+.|++|
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEE
Confidence            347999999999999 789999999999999999985 4555554332 225699999999  99999999999999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEecc----CceeeeccCCCCC----eEecC-CC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREV----GETVDTDSLCDSK----DDVPA-EG  160 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~s~-~~  160 (270)
                      |++ ++    ++..+..+......+.+.....  .......+...+|++..    ...+...  +|..    ++|+| ++
T Consensus       191 d~~-~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~  263 (383)
T 3ei3_B          191 GLD-GH----EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDS  263 (383)
T ss_dssp             ETT-SC----EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTS
T ss_pred             ECC-CC----EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCC
Confidence            994 32    2345555655555555544433  23334456678899987    3333322  3544    89999 88


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCC------CceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~------~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      ..++  +++.|+.|++||+++++....+..... ....|....      ...+..+. |+|   +++ +  +|+.||.|+
T Consensus       264 ~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~s~---dg~-~--s~s~d~~i~  333 (383)
T 3ei3_B          264 TKLL--TTDQRNEIRVYSSYDWSKPDQIIIHPH-RQFQHLTPIKATWHPMYDLIVAG-RYP---DDQ-L--LLNDKRTID  333 (383)
T ss_dssp             CEEE--EEESSSEEEEEETTBTTSCSEEEECCB-CCCTTSCCCCCEECSSSSEEEEE-CBC---CTT-T--CTTCCCCEE
T ss_pred             CEEE--EEcCCCcEEEEECCCCccccccccccc-cccccccceEEeccCCCCceEEE-ecC---Ccc-c--ccCCCCeEE
Confidence            7654  456699999999999888777762100 000111111      11223344 665   344 3  788999999


Q ss_pred             EEEcCCCCcceeeeec--cCCCeeEEEeecCCCcee
Q 024245          235 VWDIRNPGIPLTAMKV--HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~ls  268 (270)
                      +||+.+ ++++..+.+  |...+..++|+|+|.+|.
T Consensus       334 iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~  368 (383)
T 3ei3_B          334 IYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLA  368 (383)
T ss_dssp             EEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred             EEecCC-CceeeeecCCCCCceEEEEEEecCccEEE
Confidence            999999 888888887  456778889999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.8e-28  Score=191.29  Aligned_cols=227  Identities=12%  Similarity=0.125  Sum_probs=167.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG   86 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~   86 (270)
                      +....+|.+.|++++|+|++++|++++.|+.|++||+.+++   ....+..|.  ..|.+++|+|  +++ +|++++.||
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg   79 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFID--NTDLQIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEE--SSSEEEEEEETTS
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC--CceEEEEECC--CCCcEEEEEcCCC
Confidence            34456899999999999999999999999999999998876   344555777  6699999999  989 999999999


Q ss_pred             cEEEEEc-cCCccCCCCccceec--ccceEEEEeeccCCccceecCCCCceEEEecc---------CceeeeccCCCCC-
Q 024245           87 TVKCWDI-ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREV---------GETVDTDSLCDSK-  153 (270)
Q Consensus        87 ~i~~wd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-  153 (270)
                      .|++||+ .+++.     ..+..  +......+.+............+...+|++..         .+.+. .+. +.. 
T Consensus        80 ~i~~wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~  152 (342)
T 1yfq_A           80 EILKVDLIGSPSF-----QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-NTK-VKNK  152 (342)
T ss_dssp             CEEEECSSSSSSE-----EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-SSS-SCCC
T ss_pred             eEEEEEeccCCce-----EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee-EEe-eCCc
Confidence            9999999 87653     23334  44444444444322233344456677788876         44333 222 333 


Q ss_pred             ---eEecCCCCeEEEEecCCCceEEEEeCCC-ccee-eeeccCcCCCCCCcccCCCceeeeeeecCC-CCCCCceEEEEe
Q 024245          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAG  227 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~~  227 (270)
                         ++|+|++  ++  +++.|+.|++||+++ +... .....       .|    ...+.+++ |+| ++.    +|+++
T Consensus       153 v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~----~~~i~~i~-~~~~~~~----~l~~~  212 (342)
T 1yfq_A          153 IFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEES-------GL----KYQIRDVA-LLPKEQE----GYACS  212 (342)
T ss_dssp             EEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEEC-------SC----SSCEEEEE-ECSGGGC----EEEEE
T ss_pred             eEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeec-------CC----CCceeEEE-ECCCCCC----EEEEE
Confidence               7888877  33  456689999999997 5532 22221       22    34677887 998 643    99999


Q ss_pred             cCCCcEEEEEcCCC-----CcceeeeeccCC---------CeeEEEeecCCCcee
Q 024245          228 YEDGSILVWDIRNP-----GIPLTAMKVHLE---------PGLECSMWRNPITMS  268 (270)
Q Consensus       228 ~~dg~i~vwd~~~~-----~~~~~~~~~~~~---------~v~~~~~s~~g~~ls  268 (270)
                      +.||.|++||++..     .++...+..|..         .|++++|+|++.+|.
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  267 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence            99999999999984     378888888865         999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=2.7e-28  Score=192.45  Aligned_cols=209  Identities=13%  Similarity=0.036  Sum_probs=152.2

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ++..+.+|...|++++|+|++++|++++.||.|++||+++++....+....+...|.+++|+|  ++++|++++.|+.|+
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~  121 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVIS  121 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEE
Confidence            678889999999999999999999999999999999999887665553322226799999999  999999999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEecc-----------------CceeeeccCCC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREV-----------------GETVDTDSLCD  151 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~  151 (270)
                      +||++.+............+......+.+...... ......+...+|++..                 .......+.+|
T Consensus       122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
T 1k8k_C          122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  201 (372)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence            99999875211000111222333444444333322 2233356677888641                 12233344456


Q ss_pred             CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      ..    ++|+|+++.++  +++.|+.|++||+++++++..+.        +|    ...+.+++ |+|+   ++ +|++|
T Consensus       202 ~~~v~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~  262 (372)
T 1k8k_C          202 CGWVHGVCFSANGSRVA--WVSHDSTVCLADADKKMAVATLA--------SE----TLPLLAVT-FITE---SS-LVAAG  262 (372)
T ss_dssp             SSCEEEEEECSSSSEEE--EEETTTEEEEEEGGGTTEEEEEE--------CS----SCCEEEEE-EEET---TE-EEEEE
T ss_pred             CCeEEEEEECCCCCEEE--EEeCCCEEEEEECCCCceeEEEc--------cC----CCCeEEEE-EecC---CC-EEEEE
Confidence            55    89999998554  45679999999999999999888        55    33577887 9984   54 77777


Q ss_pred             cCCCcEEEEEcCC
Q 024245          228 YEDGSILVWDIRN  240 (270)
Q Consensus       228 ~~dg~i~vwd~~~  240 (270)
                       .|+.|++||+++
T Consensus       263 -~d~~i~i~~~~~  274 (372)
T 1k8k_C          263 -HDCFPVLFTYDS  274 (372)
T ss_dssp             -TTSSCEEEEEET
T ss_pred             -eCCeEEEEEccC
Confidence             899999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.3e-28  Score=193.62  Aligned_cols=225  Identities=12%  Similarity=0.144  Sum_probs=165.7

Q ss_pred             ccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      |...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|.  ..|.+++|+|. ++++|++++.||.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPR-DPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence            5578999999998    6799999999999999999999999999888  66999999984 468999999999999999


Q ss_pred             ccCCccCCCCccce---ecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeee----------------------
Q 024245           93 IENGGLSSNPSLTI---KTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDT----------------------  146 (270)
Q Consensus        93 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------  146 (270)
                      +++++...    .+   ..+......+.+....... .....+...+|++...+....                      
T Consensus       145 ~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          145 IQTDTLVA----IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             TTTTEEEE----EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             eecCeEEE----EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            99886533    33   3444444444444333222 233456778898876543221                      


Q ss_pred             -----ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce--------------eeeeccCcCCCCCCcccCC
Q 024245          147 -----DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--------------CTRLHQNSCGGSPNFSSKG  203 (270)
Q Consensus       147 -----~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~h~~~~  203 (270)
                           ...+|..    ++|+  ++.+ + +++.|+.|++||+++++.              +..+.        +|    
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~--~~~l-~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----  284 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL--GDLI-L-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--------YS----  284 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE--TTEE-E-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--------CS----
T ss_pred             cCccccccCCcceEEEEEEc--CCEE-E-EEecCCEEEEEeCCCccccccccccCCcchheecccc--------cc----
Confidence                 1122444    6776  5543 3 566799999999987754              44444        44    


Q ss_pred             CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc----eeeeecc--CCCeeEEEeecCCCcee
Q 024245          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP----LTAMKVH--LEPGLECSMWRNPITMS  268 (270)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~--~~~v~~~~~s~~g~~ls  268 (270)
                      ...+.+++ |+|+. +++ +|++|+.||.|++||+++ +++    ...+.+|  ...|++++|+|++.+|.
T Consensus       285 ~~~v~~~~-~s~~~-~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  351 (366)
T 3k26_A          285 QCDIWYMR-FSMDF-WQK-MLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI  351 (366)
T ss_dssp             SCCSSCCC-CEECT-TSS-EEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEE-EcCCC-CCc-EEEEEecCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence            33567777 99851 155 999999999999999998 543    3467777  78999999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-28  Score=185.47  Aligned_cols=224  Identities=16%  Similarity=0.222  Sum_probs=169.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC---ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      +....+..|...|.+++|+|++++|++|+.||.|++|++...   +.+..+..|.  ..|.+++|.+    ++|++++.|
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~----~~l~~~~~d  123 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ--GNVCSLSFQD----GVVISGSWD  123 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS--SCEEEEEEET----TEEEEEETT
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc--cCEEEEEecC----CEEEEEeCC
Confidence            456778889999999999999999999999999999998764   5566777787  6699999944    799999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      +.|++||  .++.    ...+..+......+....  ..........+...+|+.  .+........|..    ++|+|+
T Consensus       124 ~~i~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~  195 (313)
T 3odt_A          124 KTAKVWK--EGSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDD  195 (313)
T ss_dssp             SEEEEEE--TTEE----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEET
T ss_pred             CCEEEEc--CCcE----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCC
Confidence            9999999  3322    234444444443333332  223333444566777872  2222222222444    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +. + + +++.|+.|++||+++++.+..+.        +|    ...+.+++ |+|+   +  .|++++.||.|++||++
T Consensus       196 ~~-~-~-~~~~dg~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          196 GH-F-I-SCSNDGLIKLVDMHTGDVLRTYE--------GH----ESFVYCIK-LLPN---G--DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             TE-E-E-EEETTSEEEEEETTTCCEEEEEE--------CC----SSCEEEEE-ECTT---S--CEEEEETTSEEEEECTT
T ss_pred             Ce-E-E-EccCCCeEEEEECCchhhhhhhh--------cC----CceEEEEE-EecC---C--CEEEEecCCEEEEEECC
Confidence            97 3 3 46679999999999999999888        56    34678888 9984   4  48899999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      + ++++..+..|...|++++|+|++.+++
T Consensus       255 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~  282 (313)
T 3odt_A          255 N-GSLKQVITLPAISIWSVDCMSNGDIIV  282 (313)
T ss_dssp             T-CCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             C-CceeEEEeccCceEEEEEEccCCCEEE
Confidence            9 889999999999999999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.8e-28  Score=191.32  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=172.2

Q ss_pred             ccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeC-CCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDT-VQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ...+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+..  |.  ..|.+++|+|  + ++|++++.|+
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~--~~v~~l~~~~--~-~~l~s~~~d~  122 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEAN--LGICRICKYG--D-DKLIAASWDG  122 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCC--SCEEEEEEET--T-TEEEEEETTS
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCC--CceEEEEeCC--C-CEEEEEcCCC
Confidence            455668999999999999999 9999999999999999 77655 56667  77  6699999998  4 8999999999


Q ss_pred             cEEEEEccC---------CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEecc-Ccee-eeccCCCCC--
Q 024245           87 TVKCWDIEN---------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-DTDSLCDSK--  153 (270)
Q Consensus        87 ~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~--  153 (270)
                      .|++||+++         ++...    .+. +......+.+.... .......+...+|++.. .... ......+..  
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~~----~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i  196 (342)
T 1yfq_A          123 LIEVIDPRNYGDGVIAVKNLNSN----NTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI  196 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSS----SSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred             eEEEEcccccccccccccCCeee----EEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCce
Confidence            999999987         54433    232 33333344443333 33334455677899887 4432 222233333  


Q ss_pred             --eEecC-CCCeEEEEecCCCceEEEEeCCCc------ceeeeeccCcCCCCCCcccC-----CCceeeeeeecCCCCCC
Q 024245          154 --DDVPA-EGPKYMAVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSK-----GRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       154 --~~~s~-~~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~h~~~-----~~~~~~~~~~~~p~~~~  219 (270)
                        ++|+| ++..++  +++.||.|++||++..      +....+.        +|...     ....+.+++ |+|+   
T Consensus       197 ~~i~~~~~~~~~l~--~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~-~s~~---  262 (342)
T 1yfq_A          197 RDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------CHRLNLKDTNLAYPVNSIE-FSPR---  262 (342)
T ss_dssp             EEEEECSGGGCEEE--EEETTSEEEEEECCTTCCSTTCTTCEEEE--------CCCCCTTCCSSCCCEEEEE-ECTT---
T ss_pred             eEEEECCCCCCEEE--EEecCCcEEEEEEcCCCcccccccceeee--------cccccccccccceeEEEEE-EcCC---
Confidence              89999 987554  4556999999999887      6777777        45331     133788888 9995   


Q ss_pred             CceEEEEecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCcee
Q 024245          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITMS  268 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ls  268 (270)
                      ++ +|++|+.||.|++||+.+ ++++..+.+| ...|++++  |+|.+|.
T Consensus       263 ~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~--~~~~~l~  308 (342)
T 1yfq_A          263 HK-FLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVVKIA--CSDNILC  308 (342)
T ss_dssp             TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred             CC-EEEEecCCceEEEEcCcc-HhHhhhhhcccCCCceEec--CCCCeEE
Confidence            44 899999999999999998 8889999998 99999999  9888763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.1e-28  Score=194.00  Aligned_cols=237  Identities=11%  Similarity=0.105  Sum_probs=172.1

Q ss_pred             ccccccccEEEEEEeCC----CCEEEEecCCCcEEEEeCCCCceeEEEeecC---CCcceEEEEEeeCCC----CCEEEE
Q 024245           13 VLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIG----LNKVIS   81 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~----~~~l~s   81 (270)
                      ...+|.+.|++++|+|+    ...+++++.++.|++||+.+++.+..+..+.   +...|.+++|+|  +    +.+|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence            34589999999999984    4466666667799999999888777776433   226699999999  7    679999


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccceEEEEeecc-CCc-cceecCCCCceEEEeccCceeeec--cCCCCC----
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPY-ANAKQANEPKDCYEREVGETVDTD--SLCDSK----  153 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----  153 (270)
                      ++.||.|++||+.+++...    .+..+......+.+.. ... .......+...+|++..++.+...  +.+|..    
T Consensus        91 ~~~dg~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIK----HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             EETTCEEEEECTTTCCEEE----EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             ecCCCEEEEEEchhceEee----eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            9999999999999886533    5555655555555544 222 233344667888999888766543  245655    


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--------------------CCCCCCcccCCCceeeeeeec
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------CGGSPNFSSKGRGMCMAVQAY  213 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~h~~~~~~~~~~~~~~  213 (270)
                      ++|+|++..++  +++.|+.|++||+++++....+....                    .....+|    ...+.++. |
T Consensus       167 ~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~-~  239 (366)
T 3k26_A          167 ADYDLLGEKIM--SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH----RNYVDCVR-W  239 (366)
T ss_dssp             EEECTTSSEEE--EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC----SSCCCEEE-E
T ss_pred             EEECCCCCEEE--EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC----cceEEEEE-E
Confidence            89999998655  45669999999999887654443100                    0000013    34677777 8


Q ss_pred             CCCCCCCceEEEEecCCCcEEEEEcCCCC-------------cceeeeeccCCCeeEEEeecC--CCcee
Q 024245          214 LPSKSQGFVNVLAGYEDGSILVWDIRNPG-------------IPLTAMKVHLEPGLECSMWRN--PITMS  268 (270)
Q Consensus       214 ~p~~~~g~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~s~~--g~~ls  268 (270)
                      ++     . +|++++.||.|++||+++..             ..+..+..|...|++++|+|+  +.+|.
T Consensus       240 ~~-----~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          240 LG-----D-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             ET-----T-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred             cC-----C-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence            73     2 99999999999999998732             237778889999999999999  88764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=8.2e-28  Score=187.58  Aligned_cols=217  Identities=15%  Similarity=0.178  Sum_probs=151.2

Q ss_pred             CcccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCC---------ceeEEEeecCCCcceEEEEEeeCCC--
Q 024245            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIG--   75 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~--   75 (270)
                      +++..+.+|...|++++|+|  ++.+|++|+.||.|++||+.++         +.+..+..|.  ..|.+++|+|  +  
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~  123 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAP--AHL  123 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECC--GGG
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcC--CCC
Confidence            46777889999999999999  6999999999999999999876         5567777777  6699999999  7  


Q ss_pred             CCEEEEEeCCCcEEEEEccCCccCCCCccc---------eecccceEEEEeeccC---CccceecC-CCCceEEEeccCc
Q 024245           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLT---------IKTNSYHFCKLSLVKE---PYANAKQA-NEPKDCYEREVGE  142 (270)
Q Consensus        76 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~  142 (270)
                      +++|++++.|+.|++||+++++........         ...+......+.....   ........ .+....++....+
T Consensus       124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  203 (351)
T 3f3f_A          124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK  203 (351)
T ss_dssp             CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred             CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence            899999999999999999988754411100         0011222222333221   11122222 2222223333333


Q ss_pred             e-eeeccCCCCC----eEecCCCC---eEEEEecCCCceEEEEeCCCc--------------------------------
Q 024245          143 T-VDTDSLCDSK----DDVPAEGP---KYMAVAGEQLSEVEIWDLNTA--------------------------------  182 (270)
Q Consensus       143 ~-~~~~~~~~~~----~~~s~~~~---~~~~~~~~~d~~i~iwd~~~~--------------------------------  182 (270)
                      . ....+.+|..    ++|+|++.   .+++ +++.||.|++||++.+                                
T Consensus       204 ~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
T 3f3f_A          204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS  282 (351)
T ss_dssp             EEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEECC-------------------------------
T ss_pred             eeeeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence            2 2445666766    89999983   3444 5677999999999865                                


Q ss_pred             --------------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          183 --------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       183 --------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                                    +.+..+.        +|    ...+.+++ |+|+   ++ +|++|+.||.|++||+.+ ++.+..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~s~~---~~-~l~s~~~dg~v~iw~~~~-~~~~~~~  344 (351)
T 3f3f_A          283 NTEEKAELQSNLQVELLSEHD--------DH----NGEVWSVS-WNLT---GT-ILSSAGDDGKVRLWKATY-SNEFKCM  344 (351)
T ss_dssp             --------CCSEEEEEEEEEC--------TT----SSCEEEEE-ECSS---SC-CEEEEETTSCEEEEEECT-TSCEEEE
T ss_pred             ccceeeeecccccccEEEEEe--------cc----cccEEEEE-EcCC---CC-EEEEecCCCcEEEEecCc-Ccchhhe
Confidence                          3444444        45    34688888 9995   44 999999999999999998 5444433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=8.1e-28  Score=190.51  Aligned_cols=211  Identities=16%  Similarity=0.243  Sum_probs=156.8

Q ss_pred             CcccccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEE-----eecCCCcceEEEEEeeCCCCCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSS-----WVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ...+.+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .+|.  ..|.+++|++. ++++|++|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~sg  224 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT--ADVLSLSINSL-NANMFISG  224 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC--SCEEEEEECSS-SCCEEEEE
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc--cCeEEEEeecC-CCCEEEEE
Confidence            355678999999999999996 457999999999999999999988877     4566  66999999764 56899999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCC------CC---
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLC------DS---  152 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---  152 (270)
                      +.|++|++||++...   .++..+.++......+.+...... ......+...+||+..++.+......      +.   
T Consensus       225 s~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          225 SCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             ETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             ECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence            999999999998442   223455555555444444433222 23334566788999888765432211      11   


Q ss_pred             C-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC
Q 024245          153 K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (270)
Q Consensus       153 ~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg  231 (270)
                      . ++|+|+|+.++  +|+.||.|++||+.+++.+..+...    ..+|    ...+.+++ |+|+   |. +|++|+.||
T Consensus       302 ~~~~~s~~g~~l~--~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h----~~~v~~l~-~s~d---g~-~l~sgs~D~  366 (380)
T 3iz6_a          302 TSVAFSISGRLLF--AGYSNGDCYVWDTLLAEMVLNLGTL----QNSH----EGRISCLG-LSSD---GS-ALCTGSWDK  366 (380)
T ss_dssp             SEEEECSSSSEEE--EECTTSCEEEEETTTCCEEEEECCS----CSSC----CCCCCEEE-ECSS---SS-EEEEECTTS
T ss_pred             EEEEECCCCCEEE--EEECCCCEEEEECCCCceEEEEecc----cCCC----CCceEEEE-ECCC---CC-EEEEeeCCC
Confidence            1 89999998655  5777999999999999888777410    0044    45688888 9995   55 999999999


Q ss_pred             cEEEEEcCC
Q 024245          232 SILVWDIRN  240 (270)
Q Consensus       232 ~i~vwd~~~  240 (270)
                      +|++|++..
T Consensus       367 ~i~iW~~~~  375 (380)
T 3iz6_a          367 NLKIWAFSG  375 (380)
T ss_dssp             CEEEEECCS
T ss_pred             CEEEEecCC
Confidence            999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=2.8e-28  Score=188.44  Aligned_cols=210  Identities=16%  Similarity=0.140  Sum_probs=146.9

Q ss_pred             cccccccccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ++..+++|.+.|++++|++  ++.+|++|+.|++|++||+++++  ....+.+|.  ..|.+++|+|..++.+|++++.|
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEECSS
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEcCC
Confidence            5678899999999999986  48899999999999999998874  556677777  66999999992227899999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccC------------------CccceecCCCCceEEEeccCc--eee
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE------------------PYANAKQANEPKDCYEREVGE--TVD  145 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~~  145 (270)
                      ++|++||++++.... ....+..+......+.+...                  .........+.+.+|++....  ...
T Consensus       127 ~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  205 (316)
T 3bg1_A          127 GAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE  205 (316)
T ss_dssp             SCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred             CCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence            999999998753110 01111222222221221111                  111222234567789986543  344


Q ss_pred             eccCCCCC----eEecCCC---CeEEEEecCCCceEEEEeCCCcc----eeeeeccCcCCCCCCcccCCCceeeeeeecC
Q 024245          146 TDSLCDSK----DDVPAEG---PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (270)
Q Consensus       146 ~~~~~~~~----~~~s~~~---~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (270)
                      ..+.+|..    ++|+|++   ..+++ +++.|++|+|||+++..    ....+.        +|    ...+++++ |+
T Consensus       206 ~~l~~h~~~V~~v~~sp~~~~~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~--------~~----~~~v~~v~-~s  271 (316)
T 3bg1_A          206 QKLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASSNTWSPKLLH--------KF----NDVVWHVS-WS  271 (316)
T ss_dssp             ECCBCCSSCEEEEECCCCSSCSCCEEE-EEETTCEEEEEECSSTTCCCCBCCEEE--------EC----SSCEEEEE-EC
T ss_pred             eecccCCCceEEEEecCCCCCCCceEE-EEcCCCeEEEEEccCccccchhhhhhh--------cC----CCcEEEEE-Ec
Confidence            56778877    8999987   23444 67789999999998632    122233        34    45788898 99


Q ss_pred             CCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          215 PSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       215 p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      |+   ++ +|++++.||.|++|+...
T Consensus       272 p~---g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          272 IT---AN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TT---TC-CEEEEESSSCEEEEEECT
T ss_pred             CC---CC-EEEEEcCCCeEEEEEECC
Confidence            95   44 899999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=1.5e-27  Score=192.80  Aligned_cols=227  Identities=18%  Similarity=0.284  Sum_probs=147.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +++..+.+|...|.+++|+  +..+++|+.||.|++||+.+++.+..+.+|.  ..|.+++|    +++++++++.|+.|
T Consensus       190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~----~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--AAVRCVQY----DGRRVVSGAYDFMV  261 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCS--SCEEEEEE----CSSCEEEEETTSCE
T ss_pred             cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc--ccEEEEEE----CCCEEEEEcCCCEE
Confidence            3444555566666666554  3355666666666666666555555555555  44666655    22556666666666


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~  166 (270)
                      ++||+++++...    .+..+......+.+. ..........+...+|++.+++.+. .+.+|..  .++.+++..++  
T Consensus       262 ~iwd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~--  333 (445)
T 2ovr_B          262 KVWDPETETCLH----TLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILV--  333 (445)
T ss_dssp             EEEEGGGTEEEE----EECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEE--
T ss_pred             EEEECCCCcEeE----EecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCCCEEE-EEcCCcccEEEEEEeCCEEE--
Confidence            666666554322    333343344444441 1222233345667789988877654 3455655  56666776544  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +++.||.|++||+++++.+..+.        ++. .....+.++. |++.      +|++|+.||.|++||+++ ++.+.
T Consensus       334 ~~~~dg~i~vwd~~~~~~~~~~~--------~~~-~~~~~v~~~~-~~~~------~l~s~~~dg~v~iwd~~~-~~~~~  396 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTGQCLQTLQ--------GPN-KHQSAVTCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEFIR  396 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC--------STT-SCSSCEEEEE-ECSS------EEEEEETTSEEEEEETTT-CCEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEc--------cCC-CCCCCEEEEE-ECCC------EEEEEeCCCeEEEEECCC-Cceee
Confidence            56679999999999999998887        321 1245677887 8653      999999999999999999 78777


Q ss_pred             ee-----eccCCCeeEEEeecCCCcee
Q 024245          247 AM-----KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~-----~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+     .+|.+.|++++|+|++.+|.
T Consensus       397 ~~~~~~~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          397 NLVTLESGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             eeeccccCCCCceEEEEEecCCEEEEE
Confidence            77     46788999999999998764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=8.4e-28  Score=193.77  Aligned_cols=225  Identities=13%  Similarity=0.281  Sum_probs=171.7

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+++..+.+|.+.|++++|  ++.+|++|+.||.|++||+.+++.+..+..|.  ..|.+++|++    +.+++++.||.
T Consensus       163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~----~~l~s~s~dg~  234 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFNN----GMMVTCSKDRS  234 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEECCT----TEEEEEETTSC
T ss_pred             CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC--CcEEEEEEcC----CEEEEeeCCCc
Confidence            3567888999999999999  78899999999999999999999999999888  6699999976    69999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      |++||++++.... ....+..+......+.... .........+...+|++.+++.+.. +.+|..  .++..++..++ 
T Consensus       235 i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~-  310 (435)
T 1p22_A          235 IAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRLVV-  310 (435)
T ss_dssp             EEEEECSSSSCCE-EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTEEE-
T ss_pred             EEEEeCCCCCCce-eeeEecCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeCCCEEE-
Confidence            9999998875431 0123344555555555522 2223334456678899988776553 445555  34444565443 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc--
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--  243 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~--  243 (270)
                       +|+.||.|++||+++++++..+.        +|.    ..+.++. |.+     . +|++|+.||.|++||+++ +.  
T Consensus       311 -~g~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~-----~-~l~sg~~dg~i~vwd~~~-~~~~  369 (435)
T 1p22_A          311 -SGSSDNTIRLWDIECGACLRVLE--------GHE----ELVRCIR-FDN-----K-RIVSGAYDGKIKVWDLVA-ALDP  369 (435)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-CCS-----S-EEEEEETTSCEEEEEHHH-HTST
T ss_pred             -EEeCCCeEEEEECCCCCEEEEEe--------CCc----CcEEEEE-ecC-----C-EEEEEeCCCcEEEEECCC-CCCc
Confidence             56679999999999999999998        663    4577777 743     3 899999999999999976 33  


Q ss_pred             -------ceeeeeccCCCeeEEEeecCCCce
Q 024245          244 -------PLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       244 -------~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                             ++..+.+|...|++++|  ++.+|
T Consensus       370 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  398 (435)
T 1p22_A          370 RAPAGTLCLRTLVEHSGRVFRLQF--DEFQI  398 (435)
T ss_dssp             TSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred             cccccchheeeccCCCCCeEEEEe--CCCEE
Confidence                   68888999999999999  44443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=3.3e-27  Score=190.33  Aligned_cols=220  Identities=15%  Similarity=0.233  Sum_probs=171.1

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      +....+|...|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|.  ..|.+++|.    +++|++|+.||+|++
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~----~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQYD----ERVIITGSSDSTVRV  197 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEECC----SSEEEEEETTSCEEE
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--CcEEEEEEC----CCEEEEEcCCCeEEE
Confidence            3344567788999887  78899999999999999999999999999988  669999983    489999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee--eccCCCCC--eEecCCCCeEEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK--DDVPAEGPKYMAV  166 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~s~~~~~~~~~  166 (270)
                      ||+.+++...    .+..+......+.... .........+...+|++.......  ..+.+|..  .++..+++.++  
T Consensus       198 wd~~~~~~~~----~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~--  270 (435)
T 1p22_A          198 WDVNTGEMLN----TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--  270 (435)
T ss_dssp             EESSSCCEEE----EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE--
T ss_pred             EECCCCcEEE----EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE--
Confidence            9999986543    5555555555555542 233334456677889998776543  45667766  44445776554  


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +|+.||.|++||+++++.+..+.        +|.    ..+.++. |++     . ++++|+.||.|++||+++ ++++.
T Consensus       271 s~~~dg~i~vwd~~~~~~~~~~~--------~~~----~~v~~~~-~~~-----~-~l~~g~~dg~i~iwd~~~-~~~~~  330 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCEFVRTLN--------GHK----RGIACLQ-YRD-----R-LVVSGSSDNTIRLWDIEC-GACLR  330 (435)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE--------CCS----SCEEEEE-EET-----T-EEEEEETTSCEEEEETTT-CCEEE
T ss_pred             EEeCCCeEEEEECCcCcEEEEEc--------CCC----CcEEEEE-eCC-----C-EEEEEeCCCeEEEEECCC-CCEEE
Confidence            46679999999999999999988        663    3566676 743     2 999999999999999999 88999


Q ss_pred             eeeccCCCeeEEEeecCCCce
Q 024245          247 AMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .+.+|...|.+++|  ++.+|
T Consensus       331 ~~~~h~~~v~~~~~--~~~~l  349 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNKRI  349 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEE
T ss_pred             EEeCCcCcEEEEEe--cCCEE
Confidence            99999999999999  44443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.2e-28  Score=196.63  Aligned_cols=237  Identities=10%  Similarity=0.108  Sum_probs=166.4

Q ss_pred             Cccccccccc------------ccEEEEEEeCCC--CEEEEecCCCcEEEEeCCCCcee---------------------
Q 024245            9 DPVAVLRGHR------------ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTV---------------------   53 (270)
Q Consensus         9 ~~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~---------------------   53 (270)
                      +++..+++|.            +.|++++|+|++  .+|++++.|+.|++||+.+++..                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            3577889998            889999999998  79999999999999999764432                     


Q ss_pred             ------------------EE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc-cCC---CCccceeccc
Q 024245           54 ------------------SS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG-LSS---NPSLTIKTNS  110 (270)
Q Consensus        54 ------------------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~---~~~~~~~~~~  110 (270)
                                        .. ..+|.  ..|.+++|+|  ++++|+++ .|+.|++||+++.. ...   .....+..+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHT--YHINSISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT  226 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCS--SCCCEEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred             eEeccccchheeeeccceEEeccCCC--cceEEEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC
Confidence                              12 24566  6699999999  99999998 79999999998432 211   0000233444


Q ss_pred             ceEEEEeeccCC--ccceecCCCCceEEEeccCcee---eeccCCCC-------------C---eEecCCCCeEEEEecC
Q 024245          111 YHFCKLSLVKEP--YANAKQANEPKDCYEREVGETV---DTDSLCDS-------------K---DDVPAEGPKYMAVAGE  169 (270)
Q Consensus       111 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~---~~~s~~~~~~~~~~~~  169 (270)
                      .....+.+....  ........+.+.+|++..++..   ...+.+|.             .   ++|+|++++++  +++
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~  304 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRD  304 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE--EEE
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE--Eee
Confidence            444444444332  2334445667888999887641   23344442             3   89999998655  455


Q ss_pred             CCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCc-----------eeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          170 QLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRG-----------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       170 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~-----------~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      . +.|++||+++ ++++..+.        +|......           .+..++ |+|+   ++ +|++|+.||.|++||
T Consensus       305 ~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~---~~-~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          305 Y-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECC-WNGS---DS-VVMTGSYNNFFRMFD  370 (447)
T ss_dssp             S-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEE-ECTT---SS-EEEEECSTTEEEEEE
T ss_pred             C-CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEE-ECCC---CC-EEEEeccCCEEEEEE
Confidence            5 9999999997 88888887        56431110           123366 9995   44 899999999999999


Q ss_pred             cCCCCcceeeee---------------------------------ccCCCeeEEEeecCCCcee
Q 024245          238 IRNPGIPLTAMK---------------------------------VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       238 ~~~~~~~~~~~~---------------------------------~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.+ ++.+ .+.                                 .+...|..++|+|++.+|.
T Consensus       371 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la  432 (447)
T 3dw8_B          371 RNT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA  432 (447)
T ss_dssp             TTT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE
T ss_pred             cCC-Ccce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE
Confidence            998 5443 222                                 2345788999999998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.5e-28  Score=193.63  Aligned_cols=227  Identities=10%  Similarity=0.003  Sum_probs=154.3

Q ss_pred             ccccccccEEEEEEeCCCCEEEE-----------ecCCCcEEEEeCCCCcee-EEE---e---ecCCCcceEEEEEeeCC
Q 024245           13 VLRGHRASVTDVCFHQTKPILFA-----------GTTGGELRIWDTVQHRTV-SSS---W---VHSAAHGIVSVATGPSI   74 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s-----------~~~dg~i~vwd~~~~~~~-~~~---~---~~~~~~~v~~~~~~~~~   74 (270)
                      .|.+|...|.++++++  ..+++           ++.|+.+++|++...... ...   .   ....+..+.+++|+|  
T Consensus        68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--  143 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--  143 (365)
T ss_dssp             ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--
T ss_pred             EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--
Confidence            4677888998888764  45554           456888999998765322 111   1   122225588999999  


Q ss_pred             CCCEEEEE--eCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee-eccCCC
Q 024245           75 GLNKVISQ--GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSLCD  151 (270)
Q Consensus        75 ~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  151 (270)
                      ||++++++  +.|++|++||+++++...    .+. +......+.+................+|+..+++.+. ....+|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~----~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~  218 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKF----EIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK  218 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEE----EEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEE----EeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence            99987654  478999999999886543    333 2222322333222222333334455567766666544 345556


Q ss_pred             CC----eEecCCCCeEEEEecCCCc----eEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLS----EVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      ..    ++|+|++..++.++  .|+    .+++||+.....    ...+.        +|    ...+.+++ |+|+   
T Consensus       219 ~~~v~~v~fspdg~~l~~~s--~d~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~----~~~V~~~~-~Spd---  280 (365)
T 4h5i_A          219 NWSLSKINFIADDTVLIAAS--LKKGKGIVLTKISIKSGNTSVLRSKQVT--------NR----FKGITSMD-VDMK---  280 (365)
T ss_dssp             TEEEEEEEEEETTEEEEEEE--ESSSCCEEEEEEEEETTEEEEEEEEEEE--------SS----CSCEEEEE-ECTT---
T ss_pred             CCCEEEEEEcCCCCEEEEEe--cCCcceeEEeecccccceecceeeeeec--------CC----CCCeEeEE-ECCC---
Confidence            55    89999998766433  344    688899876553    22333        34    34688888 9995   


Q ss_pred             CceEEEEecCCCcEEEEEcCCCCcceeee-eccCCCeeEEEeecCCCcee
Q 024245          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~ls  268 (270)
                      |+ +||+|+.|++|+|||+++ ++++..+ .+|..+|++++|||||++|.
T Consensus       281 g~-~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~la  328 (365)
T 4h5i_A          281 GE-LAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVA  328 (365)
T ss_dssp             SC-EEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred             CC-ceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEE
Confidence            55 999999999999999999 7888774 78999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=187.56  Aligned_cols=213  Identities=17%  Similarity=0.186  Sum_probs=156.6

Q ss_pred             CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCC--CCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~   82 (270)
                      +++..+.+|...|++++|+++  +.+|++|+.||.|++||+.+++  .+..+..|.  ..|.+++|+|  +  +++|+++
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~l~~~  121 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLVA  121 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEEE
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC--cceEEEEeCC--CCCCCEEEEe
Confidence            567788999999999999986  8999999999999999999887  666676777  6699999999  7  8999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--------------CCccceecCCCCceEEEeccCce---ee
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--------------EPYANAKQANEPKDCYEREVGET---VD  145 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~---~~  145 (270)
                      +.|+.|++||++++....  ...+..+......+.+..              ..........+...+|++.....   ..
T Consensus       122 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  199 (379)
T 3jrp_A          122 SSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  199 (379)
T ss_dssp             ETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             cCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence            999999999999875432  334445555555555444              12233344456778899886642   33


Q ss_pred             eccCCCCC----eEecCCC--CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          146 TDSLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       146 ~~~~~~~~----~~~s~~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      ..+.+|..    ++|+|++  ..+++ +++.||.|++||+++++.......       .........+.+++ |+|+   
T Consensus       200 ~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~-~s~~---  267 (379)
T 3jrp_A          200 STLEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS---  267 (379)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEE-------SSSSCCSSCEEEEE-ECSS---
T ss_pred             EEEecccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeee-------eccccCCCcEEEEE-EcCC---
Confidence            45666766    8999993  34444 566799999999998752211110       00011245688888 9995   


Q ss_pred             CceEEEEecCCCcEEEEEcCC
Q 024245          220 GFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ++ +|++++.||.|++||+..
T Consensus       268 g~-~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          268 GN-VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SC-CEEEEESSSSEEEEEEEE
T ss_pred             CC-EEEEecCCCcEEEEeCCC
Confidence            55 899999999999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=3.1e-27  Score=198.07  Aligned_cols=230  Identities=13%  Similarity=0.053  Sum_probs=171.9

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcc-eEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      .|.+.|++++|+|++++|++++ ++.|++||+.++    +....+.+|.  .. |.+++|+|..++++|++++.||.|++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            5889999999999999999998 789999999988    8888998887  88 99999998545689999999999999


Q ss_pred             EEccCC------ccCCCCccceecccceEEEEeeccCCccceecCCCC---ceEEEeccCceeeeccCCCCC----eEec
Q 024245           91 WDIENG------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVP  157 (270)
Q Consensus        91 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~s  157 (270)
                      ||+.++      ..  .....+..+......+.+..............   ..++....++ ....+.+|..    ++|+
T Consensus        93 w~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~v~~~~~~  169 (615)
T 1pgu_A           93 WGWTFDKESNSVEV--NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLK  169 (615)
T ss_dssp             EEEEEEGGGTEEEE--EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEEC
T ss_pred             EeCCCCcccccccc--cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC-cceeeecCCccEEEEEEC
Confidence            999755      11  11224444444444444433332222222211   2333333333 3445566666    8999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      |+++.+++ +++.|+.|++||+.+++.+..+.        +|.. ....+.+++ |+|+  +++ +|++++.||.|++||
T Consensus       170 ~~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~--------~~~~-~~~~v~~~~-~~~~--~~~-~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          170 QSRPMRSM-TVGDDGSVVFYQGPPFKFSASDR--------THHK-QGSFVRDVE-FSPD--SGE-FVITVGSDRKISCFD  235 (615)
T ss_dssp             SSSSCEEE-EEETTTEEEEEETTTBEEEEEEC--------SSSC-TTCCEEEEE-ECST--TCC-EEEEEETTCCEEEEE
T ss_pred             CCCCcEEE-EEeCCCcEEEEeCCCcceeeeec--------ccCC-CCceEEEEE-ECCC--CCC-EEEEEeCCCeEEEEE
Confidence            99986665 56679999999999999999888        5632 111678888 9995  155 999999999999999


Q ss_pred             cCCCCcceeee-e---ccCCCeeEEEeecCCCce
Q 024245          238 IRNPGIPLTAM-K---VHLEPGLECSMWRNPITM  267 (270)
Q Consensus       238 ~~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~l  267 (270)
                      +++ ++++..+ .   .|...|.+++|+ ++.+|
T Consensus       236 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l  267 (615)
T 1pgu_A          236 GKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKF  267 (615)
T ss_dssp             TTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred             CCC-CCEeEEecccccccCCceEEEEEc-CCCEE
Confidence            998 7888888 6   899999999999 88765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.5e-27  Score=204.92  Aligned_cols=230  Identities=13%  Similarity=0.075  Sum_probs=162.8

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ..||.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |.  .+|.+++|+|  + ++|++++.|++|++||+
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~--~~V~~l~fsp--g-~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DR--SAIKEMRFVK--G-IYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SC--CCEEEEEEET--T-TEEEEEETTCEEEEEET
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CC--CCEEEEEEcC--C-CEEEEEECcCeEEEEEC
Confidence            45899999999999999999999999999999998777665543 44  6799999999  5 69999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCcc-ceecCCCCceEEEeccCceee----------eccCCCCC----eEecC
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVD----------TDSLCDSK----DDVPA  158 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~s~  158 (270)
                      ++++...    .+. +......+.+...... ......+.+.+|++...+...          ..+.+|..    ++|+|
T Consensus        87 ~~~~~~~----~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           87 YSQKVLT----TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             TTCSEEE----EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             CCCcEEE----EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence            9886543    332 2223333333322222 222345667889998776431          23355655    89999


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCc------ccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h------~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                      ++...++ +|+.|+.| +||+++++++..+.........+.      .......+.+++ |+|+   |+ +|++|+.||.
T Consensus       162 ~~~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~-fspd---g~-~lasgs~Dg~  234 (902)
T 2oaj_A          162 RDIGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL-YHPN---SL-HIITIHEDNS  234 (902)
T ss_dssp             TEEEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE-ECTT---SS-EEEEEETTCC
T ss_pred             CCCCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE-EcCC---CC-EEEEEECCCe
Confidence            8655555 56779999 999999998888872100000000      001135688898 9995   55 9999999999


Q ss_pred             EEEEEcCCCCcceee--e---ec-------------cCCCeeEEEeec
Q 024245          233 ILVWDIRNPGIPLTA--M---KV-------------HLEPGLECSMWR  262 (270)
Q Consensus       233 i~vwd~~~~~~~~~~--~---~~-------------~~~~v~~~~~s~  262 (270)
                      |++||+++ ++++..  +   ..             |..+|++++|++
T Consensus       235 i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          235 LVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             EEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             EEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence            99999998 666543  2   12             345799999964

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=8.8e-27  Score=186.99  Aligned_cols=233  Identities=14%  Similarity=0.173  Sum_probs=167.8

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC-ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      .++++.+.+|...|.+++++  +.+|++|+.|+.+++||.... ..+..+.+|.  ..+..+.|+|  +++++++++.|+
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~~~~~~~~~~--~g~~l~s~~~D~  252 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEVCGLRWAP--DGRHLASGGNDN  252 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTS
T ss_pred             CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc--cceeeeeecC--CCCeeeeeeccc
Confidence            35778899999999998885  569999999999999998764 5667788888  5699999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ec---CCCCceEEEeccCceeeeccCCCCC--eEecCCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQ---ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~  160 (270)
                      .+++|+..+++.....+.....+......+.......... ..   ..+.+.+|++.+++...........  +.|++++
T Consensus       253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~  332 (420)
T 4gga_A          253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY  332 (420)
T ss_dssp             CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred             cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence            9999999988755444445555555555444443332222 22   2345678999888766654333322  8899999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      ..+++++|..|+.|+|||+++++++.++.        +|.    ..|++++ |+|+   |+ +|++|+.||+|+|||+..
T Consensus       333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--------gH~----~~V~~l~-~spd---g~-~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          333 KELISGHGFAQNQLVIWKYPTMAKVAELK--------GHT----SRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred             CeEEEEEecCCCEEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence            99988788889999999999999999998        784    4688888 9995   55 999999999999999987


Q ss_pred             CCcceeeeeccCCCeeEEEeecCC
Q 024245          241 PGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                       ..+....+.+...+....|..+|
T Consensus       396 -~~~~~~~~~~~~~~~~~s~~~~g  418 (420)
T 4gga_A          396 -LDPARRREREKASAAKSSLIHQG  418 (420)
T ss_dssp             -SSCC-------------------
T ss_pred             -CCccchhhhccCCccccccCCCC
Confidence             56666666666555555554444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-26  Score=187.13  Aligned_cols=231  Identities=11%  Similarity=0.054  Sum_probs=162.9

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCC---CCceeEEEeec--------C--CCcceEEEEEeeCCCCCEEEEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---QHRTVSSSWVH--------S--AAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~--------~--~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      +|...|++++|+|++.+|++|+.||.|++||++   +++....+..+        .  ....+.++.+....++++|+++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            599999999999999999999999999999995   55544433322        1  2255777774422278999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceec--ccceEEEEeeccCCcc-ceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                      +.|+.|++||+++++...    .+..  +......+.+...... ......+...+|+++.++.+......|..    ++
T Consensus       189 ~~d~~i~iwd~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQ----IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             ETTSEEEEEETTTCCEEE----EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred             eCCCeEEEEeCCCCeeeE----EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence            999999999999886543    4444  4444444444433322 22334566788999987776654434443    64


Q ss_pred             ec----CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC----------------------CCceeee
Q 024245          156 VP----AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----------------------GRGMCMA  209 (270)
Q Consensus       156 ~s----~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~----------------------~~~~~~~  209 (270)
                      |+    +++. ++ ++++.|+.|++||+++++++..+.        +|...                      ....+.+
T Consensus       265 ~~~~~s~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~  334 (437)
T 3gre_A          265 VCQFYGKNSV-IV-VGGSSKTFLTIWNFVKGHCQYAFI--------NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST  334 (437)
T ss_dssp             ECTTTCTTEE-EE-EEESTTEEEEEEETTTTEEEEEEE--------SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred             eccccCCCcc-EE-EEEcCCCcEEEEEcCCCcEEEEEE--------cCCCCCccceecccccccccceecccccCCceEE
Confidence            44    4554 33 367789999999999999888887        33211                      2334666


Q ss_pred             eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-------------------------------------cC
Q 024245          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-------------------------------------HL  252 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------------------------------~~  252 (270)
                      ++ |++    ++ +|++|+.||.|++||+.+ +++...+.+                                     |.
T Consensus       335 l~-~~~----~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  407 (437)
T 3gre_A          335 IS-VSN----DK-ILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH  407 (437)
T ss_dssp             EE-EET----TE-EEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred             EE-ECC----ce-EEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence            66 772    34 999999999999999998 777766665                                     78


Q ss_pred             CCeeEEEeecC--CCce
Q 024245          253 EPGLECSMWRN--PITM  267 (270)
Q Consensus       253 ~~v~~~~~s~~--g~~l  267 (270)
                      ..|++++|+++  +.+|
T Consensus       408 ~~I~~i~~~~~~~~~~l  424 (437)
T 3gre_A          408 DIINSISTCEVDETPLL  424 (437)
T ss_dssp             CCEEEEEEEESSSSEEE
T ss_pred             cceeeEeeeccCCceEE
Confidence            89999999998  5443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4.1e-28  Score=191.95  Aligned_cols=205  Identities=13%  Similarity=0.018  Sum_probs=141.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      +++..+.+|...|++++|+|++++|++++.|+.|++||+.+++   ....+..|.  ..|.+++|+|  ++++|++++.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d  121 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN--RAATFVRWSP--NEDKFAVGSGA  121 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS--SCEEEEECCT--TSSCCEEEESS
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC--CceEEEEECC--CCCEEEEEecC
Confidence            5778899999999999999999999999999999999999876   566666777  6699999999  99999999999


Q ss_pred             CcEEEEEccCCccCCCCccceec-ccceEEEEeeccCCcc-ceecCCCCceEEEeccC-----------------ceeee
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYA-NAKQANEPKDCYEREVG-----------------ETVDT  146 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~  146 (270)
                      +.|++||+++++... ....+.. +......+.+...... ......+...+|++...                 .....
T Consensus       122 ~~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (377)
T 3dwl_C          122 RVISVCYFEQENDWW-VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA  200 (377)
T ss_dssp             SCEEECCC-----CC-CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred             CeEEEEEECCcccce-eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence            999999999875311 1223443 4444444444433222 22333456778988522                 12222


Q ss_pred             ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          147 DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       147 ~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      .+ +|..    ++|+|++++++  +++.|+.|++||+++++.    +..+.        +|    ...+.+++ |+|+  
T Consensus       201 ~~-~~~~~v~~~~~sp~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~s~~--  262 (377)
T 3dwl_C          201 EY-PSGGWVHAVGFSPSGNALA--YAGHDSSVTIAYPSAPEQPPRALITVK--------LS----QLPLRSLL-WANE--  262 (377)
T ss_dssp             CC-CCSSSEEEEEECTTSSCEE--EEETTTEEC-CEECSTTSCEEECCCEE--------CS----SSCEEEEE-EEET--
T ss_pred             cc-cCCceEEEEEECCCCCEEE--EEeCCCcEEEEECCCCCCcceeeEeec--------CC----CCceEEEE-EcCC--
Confidence            33 6655    89999998655  466799999999999887    66666        55    34678887 9984  


Q ss_pred             CCceEEEEecCCCcEEEEEcC
Q 024245          219 QGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~  239 (270)
                       ++ +|++|+.|+.+ +|+..
T Consensus       263 -~~-~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          263 -SA-IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -TE-EEEEESSSSEE-EECCC
T ss_pred             -CC-EEEEEcCCcEE-EEEeC
Confidence             55 88888766666 66654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.3e-27  Score=181.48  Aligned_cols=195  Identities=7%  Similarity=0.072  Sum_probs=130.2

Q ss_pred             cccEEEEEEeCC----CCEEEEecC--------------------CCcEEEEeC-CCCceeEEEeecCCCcceEEEEEee
Q 024245           18 RASVTDVCFHQT----KPILFAGTT--------------------GGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGP   72 (270)
Q Consensus        18 ~~~v~~~~~s~~----~~~l~s~~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~   72 (270)
                      ...|+.++|+|+    ++++++++.                    |+.|++|++ ++++.+..+.+|...  +..++|++
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~--v~~l~fs~  188 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE--ETILTFAE  188 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS--SCEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc--eeeEEeec
Confidence            346777777888    667776553                    888999998 457888888888844  77777777


Q ss_pred             -CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC
Q 024245           73 -SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        73 -~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (270)
                       ..++.+|++++.|++|++||++++++..    ++..+........                                  
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~----tL~g~~~~v~~v~----------------------------------  230 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLK----KMHIDDSYQASVC----------------------------------  230 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEE----EEECCC---CCCE----------------------------------
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEE----EEcCCCcceeeeE----------------------------------
Confidence             3356899999999999999999997644    4433211100000                                  


Q ss_pred             CCeEecCCCCeEE----------EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          152 SKDDVPAEGPKYM----------AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       152 ~~~~~s~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                       .++|+|+|..++          +++|+.|++|++||..+++.+..+...   ...+|..    ...+.. ++     +.
T Consensus       231 -~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~---~p~Gh~~----~~lsg~-~s-----g~  296 (356)
T 2w18_A          231 -HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC---LPPGQAG----RFLEGD-VK-----DH  296 (356)
T ss_dssp             -EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC---CCTTCCC----CEEEEE-EE-----TT
T ss_pred             -EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee---ccCCCcc----eeEccc-cC-----CC
Confidence             034667665443          357889999999999999887665210   0014532    122322 32     33


Q ss_pred             eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee-EEEeecCCCcee
Q 024245          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL-ECSMWRNPITMS  268 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~ls  268 (270)
                       ++++|+.|++|+|||+.+ ++++.++.+|...+. .++|||||++|-
T Consensus       297 -~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          297 -CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             -EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             -EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence             899999999999999999 899999999987766 589999999873

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=8.4e-28  Score=216.23  Aligned_cols=222  Identities=15%  Similarity=0.279  Sum_probs=178.6

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      +...|.+++|+|+++++++|+.||.|++||+.+++....+.+|.  ..|.+++|+|  ++++|++++.||.|++||+.++
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~--dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK--KAVRHIQFTA--DGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS--SCCCCEEECS--SSSCEEEECSSSBEEEEETTTT
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC--CceEEEEECC--CCCEEEEEcCCCEEEEEECCCC
Confidence            45679999999999999999999999999999999998888888  6699999999  9999999999999999999988


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCc
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~  172 (270)
                      +...     ...+......+.+............+...+|++.+++... .+.+|..    ++|+|+++.++  +++.|+
T Consensus      1036 ~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~--s~s~d~ 1107 (1249)
T 3sfz_A         1036 DYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER-DFTCHQGTVLSCAISSDATKFS--STSADK 1107 (1249)
T ss_dssp             EEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCE-EEECCSSCCCCEEECSSSSSCE--EECCSS
T ss_pred             ceEE-----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeE-EEcccCCcEEEEEECCCCCEEE--EEcCCC
Confidence            6542     2234444444444444444455556677889998877554 3444544    89999998665  566799


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee----
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----  248 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~----  248 (270)
                      +|++||+.+++++..+.        +|    ...+.+++ |+|+   |+ +|++|+.||.|++||+.+ ++++..+    
T Consensus      1108 ~v~iwd~~~~~~~~~l~--------~h----~~~v~~~~-~s~d---g~-~lat~~~dg~i~vwd~~~-~~~~~~~~~~~ 1169 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHELK--------GH----NGCVRCSA-FSLD---GI-LLATGDDNGEIRIWNVSD-GQLLHSCAPIS 1169 (1249)
T ss_dssp             CCCEECSSSSSCSBCCC--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCCCEEESSS-SCCCCCCCCCC
T ss_pred             cEEEEECCCcceeeeec--------cC----CCcEEEEE-ECCC---CC-EEEEEeCCCEEEEEECCC-CceEEEecccc
Confidence            99999999999888887        66    34678888 9995   55 999999999999999998 6666554    


Q ss_pred             -----eccCCCeeEEEeecCCCcee
Q 024245          249 -----KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 -----~~~~~~v~~~~~s~~g~~ls  268 (270)
                           .+|...|++++|+|||.+|.
T Consensus      1170 ~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A         1170 VEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp             -------CCSCCCEEEECTTSSCEE
T ss_pred             ccccccccCceEEEEEECCCCCEEE
Confidence                 67889999999999998874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=3.5e-26  Score=184.79  Aligned_cols=219  Identities=16%  Similarity=0.294  Sum_probs=172.4

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+++..+.+|...|++++|+  +.++++|+.||.|++||+.+++.+..+.+|.  ..|.++.|++    +.+++++.||.
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~----~~l~s~s~dg~  220 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLHE----KRVVSGSRDAT  220 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEET----TEEEEEETTSE
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCC--CcEEEEEecC----CEEEEEeCCCE
Confidence            36778899999999999998  5699999999999999999999999999888  6699999966    68999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      |++||+++++...    .+..+......+... ..........+...+|++..++.+. .+.+|..  .++..++..++ 
T Consensus       221 i~~wd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~-  293 (445)
T 2ovr_B          221 LRVWDIETGQCLH----VLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETETCLH-TLQGHTNRVYSLQFDGIHVV-  293 (445)
T ss_dssp             EEEEESSSCCEEE----EEECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTEEEE-EECCCSSCEEEEEECSSEEE-
T ss_pred             EEEEECCCCcEEE----EEcCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCcEeE-EecCCCCceEEEEECCCEEE-
Confidence            9999999886533    555565555555552 2233344456677889998876655 4456655  34444776554 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +++.|+.|++||+++++.+..+.        +|.    ..+.++. +++     . +|++|+.||.|++||+++ ++++
T Consensus       294 -~~~~d~~i~i~d~~~~~~~~~~~--------~~~----~~v~~~~-~~~-----~-~l~~~~~dg~i~vwd~~~-~~~~  352 (445)
T 2ovr_B          294 -SGSLDTSIRVWDVETGNCIHTLT--------GHQ----SLTSGME-LKD-----N-ILVSGNADSTVKIWDIKT-GQCL  352 (445)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEEC--------CCC----SCEEEEE-EET-----T-EEEEEETTSCEEEEETTT-CCEE
T ss_pred             -EEeCCCeEEEEECCCCCEEEEEc--------CCc----ccEEEEE-EeC-----C-EEEEEeCCCeEEEEECCC-CcEE
Confidence             56679999999999999999888        563    3455555 543     3 999999999999999998 8888


Q ss_pred             eeeec---cCCCeeEEEeec
Q 024245          246 TAMKV---HLEPGLECSMWR  262 (270)
Q Consensus       246 ~~~~~---~~~~v~~~~~s~  262 (270)
                      ..+.+   |...|++++|++
T Consensus       353 ~~~~~~~~~~~~v~~~~~~~  372 (445)
T 2ovr_B          353 QTLQGPNKHQSAVTCLQFNK  372 (445)
T ss_dssp             EEECSTTSCSSCEEEEEECS
T ss_pred             EEEccCCCCCCCEEEEEECC
Confidence            88886   888999999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=1e-26  Score=194.83  Aligned_cols=230  Identities=15%  Similarity=0.179  Sum_probs=169.7

Q ss_pred             Cccccccccccc-EEEEEEeC--CCCEEEEecCCCcEEEEeCCCC--------ceeEEEeecCC----------------
Q 024245            9 DPVAVLRGHRAS-VTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSA----------------   61 (270)
Q Consensus         9 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~----------------   61 (270)
                      +++..+.+|... |++++|+|  ++++|++|+.||.|++||+.++        +....+..|..                
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            788899999999 99999999  9999999999999999999643        44444443331                


Q ss_pred             --------------------------CcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCCccCCCCccceecccc---
Q 024245           62 --------------------------AHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY---  111 (270)
Q Consensus        62 --------------------------~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---  111 (270)
                                                ...|.+++|+|  ++. .+++++.|+.|++||+.+++...    .+..+..   
T Consensus       134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~----~~~~~~~~~~  207 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSA----SDRTHHKQGS  207 (615)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEE----EECSSSCTTC
T ss_pred             eccCCCCccEEEEEECCCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceee----eecccCCCCc
Confidence                                      13355555555  444 67788888999999988776533    4444444   


Q ss_pred             eEEEEeeccC-Cc-cceecCCCCceEEEeccCceeeeccC---CCCC----eEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245          112 HFCKLSLVKE-PY-ANAKQANEPKDCYEREVGETVDTDSL---CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (270)
Q Consensus       112 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~  182 (270)
                      ....+.+... .. .......+...+|++.+++.+.....   +|..    ++|+ ++..++  +++.|+.|++||++++
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~--~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA--TVGADATIRVWDVTTS  284 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE--EEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE--EEcCCCcEEEEECCCC
Confidence            4444444433 22 22334466788899988887765534   5655    8899 887554  4556899999999999


Q ss_pred             ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +.+..+.        .+.......+.++. |.    ++. ++++++.||.|++||+.+ ++++..+.+|...|++++| |
T Consensus       285 ~~~~~~~--------~~~~~~~~~~~~~~-~~----~~~-~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          285 KCVQKWT--------LDKQQLGNQQVGVV-AT----GNG-RIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV-N  348 (615)
T ss_dssp             EEEEEEE--------CCTTCGGGCEEEEE-EE----ETT-EEEEEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET-T
T ss_pred             cEEEEEc--------CCCCcccCceeEEE-eC----CCC-eEEEEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe-c
Confidence            9988887        44333345666666 64    344 899999999999999998 8889999999999999999 7


Q ss_pred             C
Q 024245          263 N  263 (270)
Q Consensus       263 ~  263 (270)
                      +
T Consensus       349 ~  349 (615)
T 1pgu_A          349 P  349 (615)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=5.6e-26  Score=181.31  Aligned_cols=228  Identities=14%  Similarity=0.164  Sum_probs=167.8

Q ss_pred             cEEEEEEeCCCC-EEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      ....++++|+.. ++++++.||.|+||++.+.    ..+..+.+|.  ..|.+++|+|. ++++|++++.||.|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPH-NDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTT-CTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCC-CCCEEEEEeCCCeEEEEEcc
Confidence            345688888765 4446889999999999654    2344566777  66999999984 45899999999999999999


Q ss_pred             CCccCC---CCccceecccceEEEEeeccCC--ccceecCCCCceEEEeccCceeeecc-CCCCC----eEecCCCCeEE
Q 024245           95 NGGLSS---NPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYM  164 (270)
Q Consensus        95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~~~~  164 (270)
                      ++....   .++..+..+......+.+....  ........+...+|++..++.+.... .+|..    ++|+|++..++
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence            875422   2344566666555555554443  23334456678889999887766543 55665    89999998665


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cCCCcEEEEEcCCC
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP  241 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~dg~i~vwd~~~~  241 (270)
                        +++.|+.|++||+++++.+..+..       +|..   ..+.++. |+|+   ++ +|++|   +.|+.|++||+++.
T Consensus       193 --~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~---~~~~~~~-~~~~---~~-~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          193 --TSCRDKRVRVIEPRKGTVVAEKDR-------PHEG---TRPVHAV-FVSE---GK-ILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             --EEETTSEEEEEETTTTEEEEEEEC-------SSCS---SSCCEEE-ECST---TE-EEEEEECTTCCEEEEEEETTBC
T ss_pred             --EEecCCcEEEEeCCCCceeeeecc-------CCCC---CcceEEE-EcCC---Cc-EEEEeccCCCCceEEEEcCccc
Confidence              456799999999999999888832       5532   2356676 9984   55 88888   79999999999985


Q ss_pred             Ccceeeee-ccCCCeeEEEeecCCCce
Q 024245          242 GIPLTAMK-VHLEPGLECSMWRNPITM  267 (270)
Q Consensus       242 ~~~~~~~~-~~~~~v~~~~~s~~g~~l  267 (270)
                      ..++.... .|...+.+++|+|++.+|
T Consensus       256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          256 EEPLSLQELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             SSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred             cCCceEEeccCCCceeEEEEcCCCCEE
Confidence            55454444 467889999999999876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=3e-27  Score=179.51  Aligned_cols=168  Identities=14%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             CcccccccccccEEEEEEeC---CCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEE-----
Q 024245            9 DPVAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKV-----   79 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l-----   79 (270)
                      +.+..+.+|...++.++|++   ++++|++|+.|++|+|||++++++++++.+|.. ...+.+++|+|  +|.++     
T Consensus       169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s~  246 (356)
T 2w18_A          169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLSH  246 (356)
T ss_dssp             CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE--TTEEEEEEC-
T ss_pred             ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC--CCCEEEEecc
Confidence            45666777888888888888   668999999999999999999999999986431 24588889999  88876     


Q ss_pred             -------EEEeCCCcEEEEEccCCccCCCCccc--ee-cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245           80 -------ISQGRDGTVKCWDIENGGLSSNPSLT--IK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (270)
Q Consensus        80 -------~s~~~d~~i~~wd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (270)
                             ++|+.|++|++||..+++...  .+.  ++ ++...+                                    
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~--v~~~~~p~Gh~~~~------------------------------------  288 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVG--VMLYCLPPGQAGRF------------------------------------  288 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEE--EEEECCCTTCCCCE------------------------------------
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEE--EEEeeccCCCccee------------------------------------
Confidence                   567889999999998886432  000  00 000000                                    


Q ss_pred             CCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       150 ~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                          +..+.++. ++ ++++.|++|+|||+.+++++.++.        +|...   .+..++ |+|+   |+ +|++|+.
T Consensus       289 ----lsg~~sg~-~l-ASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~---vvs~va-fSPD---G~-~LaSGS~  346 (356)
T 2w18_A          289 ----LEGDVKDH-CA-AAILTSGTIAIWDLLLGQCTALLP--------PVSDQ---HWSFVK-WSGT---DS-HLLAGQK  346 (356)
T ss_dssp             ----EEEEEETT-EE-EEEETTSCEEEEETTTCSEEEEEC--------CC--C---CCCEEE-ECSS---SS-EEEEECT
T ss_pred             ----EccccCCC-EE-EEEcCCCcEEEEECCCCcEEEEec--------CCCCC---eEEEEE-ECCC---CC-EEEEEEC
Confidence                11112233 33 467789999999999999999998        67432   223466 9995   55 9999999


Q ss_pred             CCcEEEEEc
Q 024245          230 DGSILVWDI  238 (270)
Q Consensus       230 dg~i~vwd~  238 (270)
                      |++|+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.1e-26  Score=185.36  Aligned_cols=223  Identities=8%  Similarity=0.011  Sum_probs=158.8

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc---eeEEEeecCC---------------------------------
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSA---------------------------------   61 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~---------------------------------   61 (270)
                      ..++.+++|+++|++|+++ .++.|++||+.+++   .+..+..+..                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977766 47799999999998   6655543221                                 


Q ss_pred             -------------------CcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEcc--CCccCCCCcccee--cccceEEEEe
Q 024245           62 -------------------AHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIE--NGGLSSNPSLTIK--TNSYHFCKLS  117 (270)
Q Consensus        62 -------------------~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~~~~--~~~~~~~~~~  117 (270)
                                         ...|.+++|+|  ++++| ++++.||.|++||+.  +++...    .+.  .+......+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~v~~~~  156 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLK----LRKRFCFSKRPNAIS  156 (450)
T ss_dssp             -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEE----EEEEEECSSCEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceee----eeecccCCCCceEEE
Confidence                               02599999999  98986 899999999999998  665433    333  3333344444


Q ss_pred             eccCCcccee-cCCCCceEEEeccCceee---eccCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcceee
Q 024245          118 LVKEPYANAK-QANEPKDCYEREVGETVD---TDSLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAERCT  186 (270)
Q Consensus       118 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~  186 (270)
                      +......... ...+.+..|++...+...   ..+.+|..    ++|+|+   ++.+ + +++.|+.|++||+++++.+.
T Consensus       157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~-s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-I-TSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-E-EEETTSCEEEEEESCTTCEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE-E-EEcCCCcEEEEECCCCceee
Confidence            4332222222 223445667776665432   24455655    899999   6544 3 56679999999999998887


Q ss_pred             eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc---------------
Q 024245          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH---------------  251 (270)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------------  251 (270)
                      .+..       +|    ...+.+++ |+ +   ++ +|++|+.|+.|++||+++ ++++..+..+               
T Consensus       235 ~~~~-------~h----~~~v~~~~-~s-d---~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  296 (450)
T 2vdu_B          235 KWLF-------GH----KHFVSSIC-CG-K---DY-LLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPP  296 (450)
T ss_dssp             EECC-------CC----SSCEEEEE-EC-S---TT-EEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC--
T ss_pred             eeec-------CC----CCceEEEE-EC-C---CC-EEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccc
Confidence            7442       56    34678887 98 5   33 999999999999999998 7777777632               


Q ss_pred             ----------CCCeeEEEeecCCCce
Q 024245          252 ----------LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 ----------~~~v~~~~~s~~g~~l  267 (270)
                                ...|.+++|+|++.+|
T Consensus       297 ~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          297 RFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             --------CBCCCEEEEEECSSSSEE
T ss_pred             cccccccccceEEEEEEEEeCCCCEE
Confidence                      3578999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.5e-26  Score=184.30  Aligned_cols=186  Identities=8%  Similarity=0.027  Sum_probs=137.3

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC---CcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      +|...|.+++|||+|.+||+++.||.|++||.+.  ++..+. |..   ...|.+++|+|  +|++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence            4688999999999999999999999999999654  665665 541   12599999999  999999999999999999


Q ss_pred             ccCCccCCC---CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           93 IENGGLSSN---PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        93 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      +.++.....   .+.+++.+                                      ..+|..    ++|+|+|  ++ 
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~--------------------------------------~~gh~~~V~sVawSPdg--La-  196 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLS--------------------------------------DAGSKDWVTHIVWYEDV--LV-  196 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECS--------------------------------------CTTCCCCEEEEEEETTE--EE-
T ss_pred             CCCCccccccceeeeeeecc--------------------------------------cccccccEEEEEEcCCc--EE-
Confidence            998743110   01111111                                      111222    6799999  43 


Q ss_pred             EecCCCceEEEEeCCCccee---eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          166 VAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                       +++.|++|++||+..++..   .++..       +|    ...+.+++ |+ .    + +||+++ ++.|++||+.+ +
T Consensus       197 -ass~D~tVrlWd~~~~~~~~~~~tL~~-------~h----~~~V~sva-Fs-g----~-~LASa~-~~tIkLWd~~~-~  255 (588)
T 2j04_A          197 -AALSNNSVFSMTVSASSHQPVSRMIQN-------AS----RRKITDLK-IV-D----Y-KVVLTC-PGYVHKIDLKN-Y  255 (588)
T ss_dssp             -EEETTCCEEEECCCSSSSCCCEEEEEC-------CC----SSCCCCEE-EE-T----T-EEEEEC-SSEEEEEETTT-T
T ss_pred             -EEeCCCeEEEEECCCCccccceeeecc-------cc----cCcEEEEE-EE-C----C-EEEEEe-CCeEEEEECCC-C
Confidence             3445899999999877742   45532       44    35688887 98 2    2 888887 69999999997 5


Q ss_pred             cceeeeeccCCCeeEEEe--ecCCCcee
Q 024245          243 IPLTAMKVHLEPGLECSM--WRNPITMS  268 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~--s~~g~~ls  268 (270)
                      +......+|.+.|.+++|  +||+..|.
T Consensus       256 ~~~~~~~gh~~~V~~va~~~s~d~~~La  283 (588)
T 2j04_A          256 SISSLKTGSLENFHIIPLNHEKESTILL  283 (588)
T ss_dssp             EEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred             eEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence            553333389999999999  99997654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.7e-25  Score=175.81  Aligned_cols=227  Identities=13%  Similarity=0.091  Sum_probs=166.3

Q ss_pred             CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~   86 (270)
                      +++..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+   ..+.+++|+|  ++++|+ +++.++
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp--dg~~l~~~~~~~~   96 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSP--DGKQVYVTNMASS   96 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEETTTT
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCccceEECC--CCCEEEEEECCCC
Confidence            4566677664 58999999999976 67889999999999999998888766   3599999999  888775 555779


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCe
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK  162 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~  162 (270)
                      .|++||+.+++...    .+.... ....+.+......  ......+...+|++.+++.......+...  ++|+|+++.
T Consensus        97 ~v~v~d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~  171 (391)
T 1l0q_A           97 TLSVIDTTSNTVAG----TVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK  171 (391)
T ss_dssp             EEEEEETTTTEEEE----EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred             EEEEEECCCCeEEE----EEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence            99999999886543    232222 2222333322222  22333556777888877665543322222  899999987


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec---CCCcEEEEEcC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIR  239 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~---~dg~i~vwd~~  239 (270)
                      +++ +++.++.|++||+++++.+..+..             ...+.+++ |+|+   ++ +|++++   .++.|++||++
T Consensus       172 l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~-~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          172 VYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GT-KAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SS-EEEEEEECSSCCEEEEEETT
T ss_pred             EEE-EeCCCCEEEEEECCCCeEEEEEec-------------CCCccceE-ECCC---CC-EEEEEecCcCCCcEEEEECC
Confidence            765 566689999999999988877762             23567777 9995   55 666666   78999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      + ++++..+..|. .+.+++|+|+|++|
T Consensus       233 ~-~~~~~~~~~~~-~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          233 T-NKITARIPVGP-DPAGIAVTPDGKKV  258 (391)
T ss_dssp             T-TEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred             C-CeEEEEEecCC-CccEEEEccCCCEE
Confidence            8 78888888764 57899999999865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=5.6e-26  Score=182.83  Aligned_cols=212  Identities=16%  Similarity=0.153  Sum_probs=158.5

Q ss_pred             CCcccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCce-------eEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT-------VSSSWVHSAAHGIVSVATGPSIGLNKV   79 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (270)
                      .+++..+.+|...|++++|+|++. +|++|+.||.|++||+..+..       ...+..|.  ..|.+++|+|. ++.+|
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~-~~~~l  247 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLL-HESLF  247 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSS-CTTEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCC-CCCEE
Confidence            467788999999999999999988 999999999999999987422       34566676  66999999994 35788


Q ss_pred             EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeeccCCCCC----
Q 024245           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK----  153 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (270)
                      ++++.|+.|++||++++... .+...+..+......+.+.....  .......+.+.+|+++........+.+|..    
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~  326 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  326 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSS-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred             EEEeCCCeEEEEECCCCCCC-cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence            99999999999999976421 22344555555555555544332  233445567888999886555556666665    


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCc--------------ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      ++|+|+++.+++ +++.|+.|+|||+...              +.+..+.        +|    ...+.+++ |+|+   
T Consensus       327 i~~sp~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~p~---  389 (430)
T 2xyi_A          327 VQWSPHNETILA-SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--------GH----TAKISDFS-WNPN---  389 (430)
T ss_dssp             EEECSSCTTEEE-EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC--------CC----SSCEEEEE-ECSS---
T ss_pred             EEECCCCCCEEE-EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC--------CC----CCCceEEE-ECCC---
Confidence            899999987776 4556899999999862              3444444        45    34688888 9995   


Q ss_pred             CceEEEEecCCCcEEEEEcCC
Q 024245          220 GFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +..+|++++.||.|++|++..
T Consensus       390 ~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          390 EPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             STTEEEEEETTSEEEEEEECH
T ss_pred             CCCEEEEEECCCCEEEeEccc
Confidence            434899999999999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-26  Score=193.45  Aligned_cols=212  Identities=17%  Similarity=0.193  Sum_probs=158.0

Q ss_pred             CcccccccccccEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCC--CCEEEEE
Q 024245            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~   82 (270)
                      +++..+.+|.+.|++++|+|+  +.+|++|+.||.|++||+.+++  .+..+..|.  ..|.+++|+|  +  ++.++++
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp--~~~~~~l~sg  119 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLVA  119 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEEE
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC--CCeEEEEECC--CCCCCEEEEE
Confidence            567788999999999999987  9999999999999999999886  666677777  6799999999  7  8999999


Q ss_pred             eCCCcEEEEEccCCccCCCCccceecccceEEEEeecc--------------CCccceecCCCCceEEEeccCc---eee
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--------------EPYANAKQANEPKDCYEREVGE---TVD  145 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~  145 (270)
                      +.||.|++||++++....  ......+......+.+..              ..........+.+.+|++....   ...
T Consensus       120 s~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          120 SSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             ETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             eCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            999999999999875432  334455555555555443              2223344446677889998764   344


Q ss_pred             eccCCCCC----eEecCC---CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          146 TDSLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       146 ~~~~~~~~----~~~s~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      ..+.+|..    ++|+|+   +. +++ +++.||.|++||+++++.......       .........+.+++ |+|+  
T Consensus       198 ~~~~~h~~~V~~l~~sp~~~~~~-~l~-s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~l~-~spd--  265 (753)
T 3jro_A          198 STLEGHSDWVRDVAWSPTVLLRS-YLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS--  265 (753)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSE-EEE-EEESSSCEEEEEESSSSSCCBCCB-------SSSSCCSSCCCCEE-ECTT--
T ss_pred             eeecCCCCcEEEEEeccCCCCCC-EEE-EEecCCEEEEecCCCCCCcceeEE-------eccCCCCCceEEEE-EcCC--
Confidence            45667766    899999   54 444 566799999999998652211110       01111245677887 9995  


Q ss_pred             CCceEEEEecCCCcEEEEEcCC
Q 024245          219 QGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                       |+ +|++|+.||.|++||+..
T Consensus       266 -g~-~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          266 -GN-VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             -TC-CEEEECSSSCEECCBCCS
T ss_pred             -CC-EEEEEcCCCEEEEEecCC
Confidence             54 899999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-26  Score=202.03  Aligned_cols=231  Identities=10%  Similarity=0.066  Sum_probs=147.8

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEe---------ecCCCcceEEEEEeeCCCCCEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSW---------VHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~---------~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      ..++||...+..++|+|++++|++|+.|++|++||+.++...  ..+.         +|.  ..|.+++|+|  ++++|+
T Consensus       429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~--~~V~svafsp--dg~~LA  504 (902)
T 2oaj_A          429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE--LAVDKISFAA--ETLELA  504 (902)
T ss_dssp             CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS--CCEEEEEEET--TTTEEE
T ss_pred             CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC--CceeEEEecC--CCCeEE
Confidence            356788888888888999999999999999999999887422  1121         455  6699999999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccce-ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eE
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (270)
                      +|+.||+|++||+.+++......... ......+..+.+...+............  .+..+-.....+.+|..    ++
T Consensus       505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~l~~h~~~V~sva  582 (902)
T 2oaj_A          505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT--GVRQGFMPSTAVHANKGKTSAIN  582 (902)
T ss_dssp             EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT--TCSEEEEEEEEECCCSCSEEEEE
T ss_pred             EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC--CCCCccceeEEEEcCCCcEEEEE
Confidence            99999999999998874211000000 0000000000000000000000000000  00011122345566766    89


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCC-CcccCCCceeeeeeecC-----CCCCCCceEEEEecC
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYL-----PSKSQGFVNVLAGYE  229 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~-----p~~~~g~~~l~~~~~  229 (270)
                      |||+| . ++ +|+.|++|+|||++++..+......   ... +|    ...+++++ |+     |++.+++ +|++|+.
T Consensus       583 fSpdG-~-lA-sgs~D~tv~lwd~~~~~~~~~~~~~---~~~~gh----~~~V~sv~-Fs~~~~~~Dg~~~~-~l~sgs~  650 (902)
T 2oaj_A          583 NSNIG-F-VG-IAYAAGSLMLIDRRGPAIIYMENIR---EISGAQ----SACVTCIE-FVIMEYGDDGYSSI-LMVCGTD  650 (902)
T ss_dssp             ECBTS-E-EE-EEETTSEEEEEETTTTEEEEEEEGG---GTCSSC----CCCEEEEE-EEEEECTTSSSEEE-EEEEEET
T ss_pred             ecCCc-E-EE-EEeCCCcEEEEECCCCeEEEEeehh---Hhcccc----ccceEEEE-EEEEecCCCCCcce-EEEEEec
Confidence            99999 4 44 5777999999999877765431110   010 34    55788888 99     8654456 9999999


Q ss_pred             CCcEEEEEc---CCCCcceeeeeccC-----CCeeEEE-ee
Q 024245          230 DGSILVWDI---RNPGIPLTAMKVHL-----EPGLECS-MW  261 (270)
Q Consensus       230 dg~i~vwd~---~~~~~~~~~~~~~~-----~~v~~~~-~s  261 (270)
                      |++|++||+   .+ ++....+.+|.     ++|.+++ |+
T Consensus       651 D~tv~~wd~~p~~~-g~~~~~~~~~~~~~~~~~v~~i~~~~  690 (902)
T 2oaj_A          651 MGEVITYKILPASG-GKFDVQLMDITNVTSKGPIHKIDAFS  690 (902)
T ss_dssp             TSEEEEEEEEECGG-GCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred             CCcEEEEEEecCCC-CcEEEEecCceecCCCCceEEEEeEe
Confidence            999999999   66 77778887774     6788887 77

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=6.1e-25  Score=176.83  Aligned_cols=225  Identities=10%  Similarity=0.002  Sum_probs=165.3

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~w   91 (270)
                      .+.+|...|++++|++++.++++++.|+.|++||+++++.+..+..+.  ..+.+++|+|  +++.++ +++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG--KWSKILLYDP--IRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS--SSEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcC--CCCEEEEEecCCCcEEEE
Confidence            567899999999999999999999999999999999999998888777  5699999999  888775 55589999999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecC---------CCCceEEEeccCceeeeccC-CCCC-eEecCCC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---------NEPKDCYEREVGETVDTDSL-CDSK-DDVPAEG  160 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~~  160 (270)
                      |+++++...    .+.... ....+.+...........         .+...+|++.+++....... .... ++|+|++
T Consensus       240 d~~~~~~~~----~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          240 DRKTKLEIR----KTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             ETTTTEEEE----ECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred             ECCCCcEEE----EecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence            999876533    222221 222233322221111111         23455788877765443211 1111 8999999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-----------
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-----------  229 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-----------  229 (270)
                      +.+++ +++.|+.|++||+.+++.+..+..             ...+.+++ |+|+   |+ +|++++.           
T Consensus       315 ~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~~~~  375 (433)
T 3bws_A          315 NKIYV-SDMCCSKIEVYDLKEKKVQKSIPV-------------FDKPNTIA-LSPD---GK-YLYVSCRGPNHPTEGYLK  375 (433)
T ss_dssp             TEEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSSEEEEE-ECTT---SS-EEEEEECCCCCTTTCTTS
T ss_pred             CEEEE-EecCCCEEEEEECCCCcEEEEecC-------------CCCCCeEE-EcCC---CC-EEEEEecCCCcccccccc
Confidence            87776 556689999999999888877762             23466777 9995   54 6666655           


Q ss_pred             ----CCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          230 ----DGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       230 ----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                          ||.|++||+.+ ++.+..+.. ...+.+++|+|+|++|
T Consensus       376 ~g~~dg~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l  415 (433)
T 3bws_A          376 KGLVLGKVYVIDTTT-DTVKEFWEA-GNQPTGLDVSPDNRYL  415 (433)
T ss_dssp             CCSSCCEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSCEE
T ss_pred             ccccceEEEEEECCC-CcEEEEecC-CCCCceEEEcCCCCEE
Confidence                57999999998 788888876 4679999999999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-26  Score=180.64  Aligned_cols=179  Identities=9%  Similarity=0.001  Sum_probs=134.6

Q ss_pred             EeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccc
Q 024245           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT  105 (270)
Q Consensus        26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  105 (270)
                      +.+++.+|++|+.||.|++||+.+++.+..+.  .  ..|.++.|+|  .   +++++.|++|++|+.....        
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~--~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~--------  106 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T--PNPRTGGEHP--A---IISRGPCNRLLLLYPGNQI--------  106 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E--ECCCTTCCCC--S---EEEECSTTEEEEEETTTEE--------
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c--CCceeeeeCC--c---eEEecCCCeEEEEEccCce--------
Confidence            33577899999999999999999999888877  2  4588999999  5   9999999999999986421        


Q ss_pred             eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecC--CCCeEEEEecCCCceEEEEeC
Q 024245          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EGPKYMAVAGEQLSEVEIWDL  179 (270)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~--~~~~~~~~~~~~d~~i~iwd~  179 (270)
                                                  ..|+....+.+.....+|..    ++|+|  ++++++  +++.|++|++||+
T Consensus       107 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~dg~i~~wd~  156 (343)
T 3lrv_A          107 ----------------------------TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFI--WADNRGTIGFQSY  156 (343)
T ss_dssp             ----------------------------EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEE--EEETTCCEEEEES
T ss_pred             ----------------------------EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEE--EEeCCCcEEEEEC
Confidence                                        11122222212212222222    67899  887554  5667999999999


Q ss_pred             CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce-eeeec-cCCCeeE
Q 024245          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV-HLEPGLE  257 (270)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-~~~~v~~  257 (270)
                      ++++.+..+.        .+   ....+.+++ |+|+   |. +|++|+.||.|++||+++ ++.+ ..+.. |..+|++
T Consensus       157 ~~~~~~~~~~--------~~---~~~~i~~~~-~~pd---g~-~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~  219 (343)
T 3lrv_A          157 EDDSQYIVHS--------AK---SDVEYSSGV-LHKD---SL-LLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIKE  219 (343)
T ss_dssp             SSSCEEEEEC--------CC---SSCCCCEEE-ECTT---SC-EEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEEE
T ss_pred             CCCcEEEEEe--------cC---CCCceEEEE-ECCC---CC-EEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEEE
Confidence            9999876665        22   233477887 9995   55 999999999999999999 5655 78887 9999999


Q ss_pred             EEeecCCCcee
Q 024245          258 CSMWRNPITMS  268 (270)
Q Consensus       258 ~~~s~~g~~ls  268 (270)
                      ++|+|+|.+|.
T Consensus       220 l~fs~~g~~l~  230 (343)
T 3lrv_A          220 VKFADNGYWMV  230 (343)
T ss_dssp             EEECTTSSEEE
T ss_pred             EEEeCCCCEEE
Confidence            99999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.2e-25  Score=173.30  Aligned_cols=168  Identities=10%  Similarity=0.024  Sum_probs=122.8

Q ss_pred             cccccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           16 GHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        16 ~h~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +|.+.|.+++|+|  +++++++|+.||.|++||+++++.......+.. ..|.+++|+|  ++.+|++|+.||.|++||+
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~p--dg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHK--DSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECT--TSCEEEEECTTSCEEEEES
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECC--CCCEEEEEcCCCEEEEEEC
Confidence            5778999999999  999999999999999999999988766644432 5699999999  9999999999999999999


Q ss_pred             cCCccCCCCccceec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245           94 ENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      ++++...   ..+.. +......                                      ++|+|++.+++  +++ |+
T Consensus       200 ~~~~~~~---~~~~~~h~~~v~~--------------------------------------l~fs~~g~~l~--s~~-~~  235 (343)
T 3lrv_A          200 SSPDQAS---SRFPVDEEAKIKE--------------------------------------VKFADNGYWMV--VEC-DQ  235 (343)
T ss_dssp             SCTTSCC---EECCCCTTSCEEE--------------------------------------EEECTTSSEEE--EEE-SS
T ss_pred             CCCCCCc---cEEeccCCCCEEE--------------------------------------EEEeCCCCEEE--EEe-CC
Confidence            9886431   12222 2221111                                      56999997655  344 45


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCCCC
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPG  242 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~~~  242 (270)
                      .|++||+++++.+..+....     .|......  .+++ |+|+   |+ +|++++. |+.|++|++....
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~--~~~~-~~~~---g~-~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYT-----IPEFKTGT--VTYD-IDDS---GK-NMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCB-----C-----CC--EEEE-ECTT---SS-EEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEEEcCCCCcceeecccc-----cccccccc--eEEE-ECCC---CC-EEEEecCCCCcEEEEEEcccc
Confidence            99999999988766655100     12111111  3466 9995   55 8888887 9999999997633

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=2.5e-24  Score=171.62  Aligned_cols=216  Identities=14%  Similarity=0.133  Sum_probs=150.8

Q ss_pred             ccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC-CCCEEEEEeCCCcEEEEE
Q 024245           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        15 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~i~~wd   92 (270)
                      .+|...|.+++|+| ++.+|++++.||.|++||+.+++....+.. .  ..+.++.|+|.. ++.++++++.|+.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S--SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C--CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            46999999999999 778999999999999999999998888763 3  569999999832 234899999999999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCc--cceecCCCCceEEEeccCceeeecc---------------CCCCC--
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDCYEREVGETVDTDS---------------LCDSK--  153 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--  153 (270)
                      +++++..    ..+..+......+.+.....  .......+...+|++.........+               .+|..  
T Consensus       173 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          173 LKSGSCS----HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSSSCCC----EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             CCCccee----eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            9988653    35555555555555544433  3344456678889987765332222               34444  


Q ss_pred             --eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC-------------------------------------
Q 024245          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG-------------------------------------  194 (270)
Q Consensus       154 --~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------------------  194 (270)
                        ++|+|+++.++  +++.|+.|++||+++++....+......                                     
T Consensus       249 ~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          249 NGLCFTSDGLHLL--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             EEEEECTTSSEEE--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             eEEEEcCCCCEEE--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence              89999998665  4556899999999876644322210000                                     


Q ss_pred             --CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          195 --GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       195 --~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                        ...+|    ...+.+++ |+|+   ++ +|++|+.||.|++||+++ .+++....
T Consensus       327 ~~~~~~~----~~~v~~~~-~s~~---~~-~l~s~~~dg~i~iw~~~~-~~~~~~~~  373 (408)
T 4a11_B          327 ITMLKGH----YKTVDCCV-FQSN---FQ-ELYSGSRDCNILAWVPSL-YEPVPDDD  373 (408)
T ss_dssp             EEEECCC----SSCEEEEE-EETT---TT-EEEEEETTSCEEEEEECC---------
T ss_pred             eeeeccC----CCeEEEEE-EcCC---CC-EEEEECCCCeEEEEeCCC-CCccCCCC
Confidence              00133    35678887 9995   44 999999999999999998 66555443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=5.5e-24  Score=166.97  Aligned_cols=188  Identities=10%  Similarity=0.083  Sum_probs=137.3

Q ss_pred             ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC-
Q 024245           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-   96 (270)
                      ..+..+++.+++..+ ++++.|+.|++||+.+++++..+.. .  ..|.+++|++  +  .++.+ .|+.|++||+.++ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~--~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~  130 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-D--APVKDLFLSR--E--FIVVS-YGDVISVFKFGNPW  130 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-S--SCEEEEEECS--S--EEEEE-ETTEEEEEESSTTC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-C--CceEEEEEcC--C--EEEEE-EcCEEEEEECCCCc
Confidence            357788888888776 5688889999999999999988874 3  5699999988  4  44444 4789999999987 


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccce--ecCCCCceEEEeccCce--------------e-eeccCCCCC----eE
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANA--KQANEPKDCYEREVGET--------------V-DTDSLCDSK----DD  155 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~----~~  155 (270)
                      +...    .+.. ....+.++.   .....  ....+.+.+|++..+..              . ...+.+|..    ++
T Consensus       131 ~~~~----~~~~-~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~  202 (355)
T 3vu4_A          131 KRIT----DDIR-FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR  202 (355)
T ss_dssp             CBSS----CCEE-EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred             eeeE----Eecc-CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence            5433    3333 222333332   11122  23456678899887541              1 345677877    89


Q ss_pred             ecCCCCeEEEEecCCCce-EEEEeCCCcceeeeeccCcCCCCCC-cccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          156 VPAEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      |+|+|.+++  +|+.|++ |+|||+++++++.++..       + |    ...+.+++ |+|+   |+ +|++++.|++|
T Consensus       203 ~s~~g~~l~--s~s~d~~~v~iwd~~~~~~~~~~~~-------g~h----~~~v~~~~-~s~~---~~-~l~s~s~d~~v  264 (355)
T 3vu4_A          203 LNRKSDMVA--TCSQDGTIIRVFKTEDGVLVREFRR-------GLD----RADVVDMK-WSTD---GS-KLAVVSDKWTL  264 (355)
T ss_dssp             ECTTSSEEE--EEETTCSEEEEEETTTCCEEEEEEC-------TTC----CSCEEEEE-ECTT---SC-EEEEEETTCEE
T ss_pred             ECCCCCEEE--EEeCCCCEEEEEECCCCcEEEEEEc-------CCC----CCcEEEEE-ECCC---CC-EEEEEECCCEE
Confidence            999997544  6778998 99999999999998873       3 5    35788888 9995   55 99999999999


Q ss_pred             EEEEcCC
Q 024245          234 LVWDIRN  240 (270)
Q Consensus       234 ~vwd~~~  240 (270)
                      ++||++.
T Consensus       265 ~iw~~~~  271 (355)
T 3vu4_A          265 HVFEIFN  271 (355)
T ss_dssp             EEEESSC
T ss_pred             EEEEccC
Confidence            9999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=9.7e-25  Score=171.58  Aligned_cols=202  Identities=11%  Similarity=0.131  Sum_probs=144.5

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEE--eeCCCCCEEEEEeCCCcE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~d~~i   88 (270)
                      ...+.+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|.  ..|.+++|  +|  ++++|++++.|+.|
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~--~~v~~~~~~~~~--~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHD--APVKTIHWIKAP--NYSCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECS--SCEEEEEEEECS--SCEEEEEEETTSEE
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecccc--CceEEEEEEeCC--CCCEEEEccCCCcE
Confidence            37788999999999999999999999999999999999888776 45576  66999999  66  88899999999999


Q ss_pred             EEEEccCCccCCCCccceecccc-----------------------------------------eEEEEeeccCCc----
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSY-----------------------------------------HFCKLSLVKEPY----  123 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~----  123 (270)
                      ++||+++++...    .+..+..                                         ............    
T Consensus       154 ~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          154 KFWDTRSSNPMM----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             EEECSSCSSCSE----EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             EEEECCCCcEEE----EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            999999876433    2221110                                         001111111110    


Q ss_pred             -cceecCCCCceEEEeccCce--eeeccCCCC-------------C---eEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245          124 -ANAKQANEPKDCYEREVGET--VDTDSLCDS-------------K---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (270)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~  184 (270)
                       .......+...+|++.....  ....+.+|.             .   ++|+|++++++  +++.||.|++||++++++
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA--TVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE--EEETTSCEEEEETTTTEE
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE--EEccCCeEEEEECCCCcE
Confidence             22233344556677766531  112222332             2   89999998654  566799999999999999


Q ss_pred             eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +..+.        +|    ...+.+++ |+|+   |+ +|++++.|+..+.|++..
T Consensus       308 ~~~~~--------~~----~~~v~~~~-~s~~---g~-~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          308 LKTSE--------QL----DQPISACC-FNHN---GN-IFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEECC--------CC----SSCEEEEE-ECTT---SS-CEEEEECCCSTTCGGGCC
T ss_pred             EEEec--------CC----CCCceEEE-ECCC---CC-eEEEEecccccccccccC
Confidence            98888        56    34688888 9995   55 899999998766666554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.8e-24  Score=174.04  Aligned_cols=228  Identities=8%  Similarity=-0.011  Sum_probs=165.6

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE-----EeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-----SWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      +..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....     +.+|.  ..|.+++|+|  ++.++++++.|
T Consensus       116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~s~~~d  190 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPE--HNELWVSQMQA  190 (433)
T ss_dssp             EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGG--GTEEEEEEGGG
T ss_pred             EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcC--CCEEEEEECCC
Confidence            3344433 4466999999888889999999999999999988763     33455  5699999999  88999999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCCCCC---eEecCCC
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG  160 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~  160 (270)
                      +.|++||+++++...    .+..+......+.+.......  .....+...+|++..++.+... ..+..   ++|+|++
T Consensus       191 ~~v~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g  265 (433)
T 3bws_A          191 NAVHVFDLKTLAYKA----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT-DKIGLPRGLLLSKDG  265 (433)
T ss_dssp             TEEEEEETTTCCEEE----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-CCCSEEEEEEECTTS
T ss_pred             CEEEEEECCCceEEE----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-cCCCCceEEEEcCCC
Confidence            999999999876533    444443334444443333222  2223456777898877665433 33333   8999999


Q ss_pred             CeEEEEecC------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          161 PKYMAVAGE------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       161 ~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      +.+++++..      .|+.|++||+++++.+..+.         |    ...+..++ |+|+   ++.++++++.|+.|+
T Consensus       266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~----~~~~~~~~-~~~~---g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---------P----PGNKRHIV-SGNT---ENKIYVSDMCCSKIE  328 (433)
T ss_dssp             SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---------E----EECEEEEE-ECSS---TTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---------C----CCCcceEE-ECCC---CCEEEEEecCCCEEE
Confidence            877654321      47899999999988777664         2    22456676 9984   543778889999999


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +||+.+ ++.+..+. +...+.+++|+|+|++|
T Consensus       329 v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l  359 (433)
T 3bws_A          329 VYDLKE-KKVQKSIP-VFDKPNTIALSPDGKYL  359 (433)
T ss_dssp             EEETTT-TEEEEEEE-CSSSEEEEEECTTSSEE
T ss_pred             EEECCC-CcEEEEec-CCCCCCeEEEcCCCCEE
Confidence            999998 77777776 67789999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1e-24  Score=175.88  Aligned_cols=190  Identities=4%  Similarity=0.012  Sum_probs=131.5

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce-----------------------------eEEEe-ecCCCc
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----------------------------VSSSW-VHSAAH   63 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------------~~~~~-~~~~~~   63 (270)
                      -+.....|.+++|+|||+++|+++.|++|+  |...++.                             ...+. .+  ..
T Consensus        11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~--~~   86 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP--VC   86 (588)
T ss_dssp             SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC--SC
T ss_pred             HhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC--CC
Confidence            345567899999999999999999999985  4333221                             11122 22  26


Q ss_pred             ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCce
Q 024245           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET  143 (270)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (270)
                      .|.+++|+|  +|..|++++.||.|++||..+  +.    ..+. +.......++.                        
T Consensus        87 ~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l----~~l~-~~~~~~~~sv~------------------------  133 (588)
T 2j04_A           87 YPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--ML----TNLD-SKGNLSSRTYH------------------------  133 (588)
T ss_dssp             CEEEEEECS--SSSCEEEEETTSCEEEEETTE--EE----EECC-CSSCSTTTCEE------------------------
T ss_pred             cEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--ee----eecc-CCCccccccEE------------------------
Confidence            799999999  999999999999999999543  11    1111 11000000000                        


Q ss_pred             eeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcce-------eeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245          144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (270)
Q Consensus       144 ~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (270)
                               .++|||+|+.++  +|+.||+|+|||+.++..       +.++.        .|.......+.+++ |+|+
T Consensus       134 ---------svafSPDG~~LA--sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--------~~~~gh~~~V~sVa-wSPd  193 (588)
T 2j04_A          134 ---------CFEWNPIESSIV--VGNEDGELQFFSIRKNSENTPEFYFESSIR--------LSDAGSKDWVTHIV-WYED  193 (588)
T ss_dssp             ---------EEEECSSSSCEE--EEETTSEEEEEECCCCTTTCCCCEEEEEEE--------CSCTTCCCCEEEEE-EETT
T ss_pred             ---------EEEEcCCCCEEE--EEcCCCEEEEEECCCCccccccceeeeeee--------cccccccccEEEEE-EcCC
Confidence                     067999998665  567799999999998753       56664        23222356899998 9994


Q ss_pred             CCCCceEEEEecCCCcEEEEEcCCCCc---ceeee-eccCCCeeEEEeecCCCcee
Q 024245          217 KSQGFVNVLAGYEDGSILVWDIRNPGI---PLTAM-KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       217 ~~~g~~~l~~~~~dg~i~vwd~~~~~~---~~~~~-~~~~~~v~~~~~s~~g~~ls  268 (270)
                         |   +++++.|+.|++||+.. +.   ...++ .+|...|.+++|+ +..+++
T Consensus       194 ---g---Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V~svaFs-g~~LAS  241 (588)
T 2j04_A          194 ---V---LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKITDLKIV-DYKVVL  241 (588)
T ss_dssp             ---E---EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSCCCCEEEE-TTEEEE
T ss_pred             ---c---EEEEeCCCeEEEEECCC-CccccceeeecccccCcEEEEEEE-CCEEEE
Confidence               4   78889999999999987 44   23556 4788999999999 444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=2.2e-23  Score=165.60  Aligned_cols=206  Identities=12%  Similarity=0.090  Sum_probs=152.4

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      .++++++.|+.|++||+.+++.+..+..+   ..+.+++|+|  ++++| ++++.|+.|++||+.+++...    .+...
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~----~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG---SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC---CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE----EEECC
Confidence            46889999999999999999999888876   3489999999  98876 677799999999999887543    33322


Q ss_pred             cceEEEEeeccCCccc--eecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcce
Q 024245          110 SYHFCKLSLVKEPYAN--AKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~  184 (270)
                      . ....+.+.......  .....+...+|++..++.+.... .+..   ++|+|+++.+++ +++.|+.|++||+.+++.
T Consensus        74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEE
T ss_pred             C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCcE
Confidence            2 23333333322222  22234567789988877655433 2333   899999987765 566789999999999998


Q ss_pred             eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +..+.        .+     ..+..++ |+|+   ++.++++++.|+.|++||+++ ++.+..+. +...+.+++|+|+|
T Consensus       151 ~~~~~--------~~-----~~~~~~~-~~~d---g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          151 INTVS--------VG-----RSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG  211 (391)
T ss_dssp             EEEEE--------CC-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS
T ss_pred             EEEEe--------cC-----CCcceEE-ECCC---CCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCC
Confidence            88887        33     2346676 9985   543557888999999999998 77777776 45688999999999


Q ss_pred             Cce
Q 024245          265 ITM  267 (270)
Q Consensus       265 ~~l  267 (270)
                      .+|
T Consensus       212 ~~l  214 (391)
T 1l0q_A          212 TKA  214 (391)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=6.4e-25  Score=174.61  Aligned_cols=200  Identities=15%  Similarity=0.100  Sum_probs=112.7

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE-----EEeecCCCcceEEEEEeeC------CCCCEEEEEeCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-----SSWVHSAAHGIVSVATGPS------IGLNKVISQGRD   85 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~------~~~~~l~s~~~d   85 (270)
                      |...+....+.+++.+|++|+.|++|+|||+.+++...     .+.+|.  +.|.+++|+|.      .++++|+|++.|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~--~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH--NFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS--SCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC--CceEEEEEccccccccCCCCCEEEEEECC
Confidence            33333444444566789999999999999999876543     345777  66999999872      156899999999


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEE
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  165 (270)
                      ++|++||++++....    ....+.....  +                                    ++|+|++..+++
T Consensus       166 ~tv~~Wd~~~~~~~~----~~~~~~~~v~--~------------------------------------v~~~p~~~~~l~  203 (393)
T 4gq1_A          166 CTLIIWRLTDEGPIL----AGYPLSSPGI--S------------------------------------VQFRPSNPNQLI  203 (393)
T ss_dssp             SEEEEEEEETTEEEE----EEEECSSCEE--E------------------------------------EEEETTEEEEEE
T ss_pred             CeEEEEECCCCceee----eecCCCCCcE--E------------------------------------EEECCCCCceEE
Confidence            999999998764321    2222211111  0                                    569999876665


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCC-------------CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCG-------------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~  232 (270)
                       +++.|++|++||+++++...........             ............+.++. |.+.  +++ .|++++.|+.
T Consensus       204 -~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~-~~~~--dg~-~l~s~s~d~~  278 (393)
T 4gq1_A          204 -VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR-WIGS--DGS-GILAMCKSGA  278 (393)
T ss_dssp             -EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE-EETT--TTC-EEEEECTTSE
T ss_pred             -ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee-eecC--CCC-EEEEEeCCCC
Confidence             5778999999999988755443311000             00000011233455666 6532  566 9999999999


Q ss_pred             EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          233 ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       233 i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      +++||+.. ++....+..|...+..+.+.|+++.
T Consensus       279 i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          279 WLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             EEEEEC--------------------CCSCSEEE
T ss_pred             EEEEECcc-CCCCceEeeecCccccEEEcccccc
Confidence            99999998 6767777777777777766665543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=3.2e-22  Score=160.04  Aligned_cols=224  Identities=12%  Similarity=0.013  Sum_probs=155.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCC---cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (270)
                      ..+.+.+|...|.+++|+|+|++|++++.++   .|++||+.+++.. .+..+.  ..+.+++|+|  +|+.|+ +++.+
T Consensus       170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~--~~~~~~~~sp--dg~~la~~~~~~  244 (415)
T 2hqs_A          170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP--RHNGAPAFSP--DGSKLAFALSKT  244 (415)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS--SCEEEEEECT--TSSEEEEEECTT
T ss_pred             CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCC--CcccCEEEcC--CCCEEEEEEecC
Confidence            4567788999999999999999999999885   9999999988775 455555  5699999999  999887 67666


Q ss_pred             Cc--EEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--c--CCCCceE--EEeccCceeeeccCCCCC--eE
Q 024245           86 GT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--Q--ANEPKDC--YEREVGETVDTDSLCDSK--DD  155 (270)
Q Consensus        86 ~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~~~~--~~  155 (270)
                      +.  |.+||+.+++..     .+..+.......  .+.+....+  .  ..+...+  |++..++.......+...  ++
T Consensus       245 g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~--~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~  317 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIR-----QVTDGRSNNTEP--TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD  317 (415)
T ss_dssp             SSCEEEEEETTTCCEE-----ECCCCSSCEEEE--EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             CCceEEEEECCCCCEE-----eCcCCCCcccce--EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence            65  999999887642     222222222222  333333211  1  1232244  466555533322222222  89


Q ss_pred             ecCCCCeEEEEecCC--CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--
Q 024245          156 VPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--  231 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--  231 (270)
                      |+|+|++++++ +..  +..|++||+.+++.. .+.        .+     ..+.++. |+|+   |+ +|++++.++  
T Consensus       318 ~spdG~~l~~~-~~~~g~~~i~~~d~~~~~~~-~l~--------~~-----~~~~~~~-~spd---g~-~l~~~s~~~~~  377 (415)
T 2hqs_A          318 VSSDGKFMVMV-SSNGGQQHIAKQDLATGGVQ-VLS--------ST-----FLDETPS-LAPN---GT-MVIYSSSQGMG  377 (415)
T ss_dssp             ECTTSSEEEEE-EECSSCEEEEEEETTTCCEE-ECC--------CS-----SSCEEEE-ECTT---SS-EEEEEEEETTE
T ss_pred             ECCCCCEEEEE-ECcCCceEEEEEECCCCCEE-Eec--------CC-----CCcCCeE-EcCC---CC-EEEEEEcCCCc
Confidence            99999977654 333  358999999988763 444        23     1466676 9994   55 777777766  


Q ss_pred             -cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          232 -SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       232 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       .|++||+.  +.....+..|.+.|.+++|+|.-.+-
T Consensus       378 ~~l~~~d~~--g~~~~~l~~~~~~v~~~~~~~~~~~~  412 (415)
T 2hqs_A          378 SVLNLVSTD--GRFKARLPATDGQVKFPAWSPYLHHH  412 (415)
T ss_dssp             EEEEEEETT--SCCEEECCCSSSEEEEEEECCCCCCC
T ss_pred             cEEEEEECC--CCcEEEeeCCCCCCcCCccccccccc
Confidence             79999987  56678888999999999999987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3e-22  Score=152.63  Aligned_cols=225  Identities=12%  Similarity=0.012  Sum_probs=149.3

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe--CCCcE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDGTV   88 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~d~~i   88 (270)
                      ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+.. ..+.+++|+|  ++++|++++  .++..
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGISP--DGALYAISDKVEFGKS  110 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-CBCSCCEECT--TSSEEEEEECTTTSSC
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-ccccceEECC--CCCEEEEEEeCCCCcc
Confidence            35667889999999999999999987 78999999998 877766655432 5588999999  999999888  44556


Q ss_pred             EEEEcc--CCccCCCCccceecccceEEEEeeccCCccc----eecCCCCceEEEeccCceeeeccCCCCC----eEecC
Q 024245           89 KCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (270)
Q Consensus        89 ~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~  158 (270)
                      .+|.++  ++..     ..+..... ...  +.+.+...    .........+|++.........+..+..    ++|+|
T Consensus       111 ~l~~~~~~~~~~-----~~~~~~~~-~~~--~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  182 (297)
T 2ojh_A          111 AIYLLPSTGGTP-----RLMTKNLP-SYW--HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP  182 (297)
T ss_dssp             EEEEEETTCCCC-----EECCSSSS-EEE--EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT
T ss_pred             eEEEEECCCCce-----EEeecCCC-ccc--eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC
Confidence            666554  4332     11211111 222  22233222    1222344466775433222223333332    89999


Q ss_pred             CCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC-------
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-------  230 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d-------  230 (270)
                      +++.+++ ++..++.++||++. .+.....+.        .|    ...+..+. |+|+   |+ +|++++.+       
T Consensus       183 dg~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          183 DGRWIYF-NSSRTGQMQIWRVRVDGSSVERIT--------DS----AYGDWFPH-PSPS---GD-KVVFVSYDADVFDHP  244 (297)
T ss_dssp             TSSEEEE-EECTTSSCEEEEEETTSSCEEECC--------CC----SEEEEEEE-ECTT---SS-EEEEEEEETTCCSCC
T ss_pred             CCCEEEE-EecCCCCccEEEECCCCCCcEEEe--------cC----CcccCCeE-ECCC---CC-EEEEEEcCCCCCccc
Confidence            9987765 45457889999886 455555665        33    24566777 9995   55 77777655       


Q ss_pred             ----CcEEEEEcCCCCcc--eeeeeccCCCeeEEEeecCCCce
Q 024245          231 ----GSILVWDIRNPGIP--LTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       231 ----g~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                          +.|++||+.+ ++.  +..+.+|...+.+++|+|||++|
T Consensus       245 ~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l  286 (297)
T 2ojh_A          245 RDLDVRVQLMDMDG-GNVETLFDLFGGQGTMNSPNWSPDGDEF  286 (297)
T ss_dssp             SSEEEEEEEEETTS-CSCEEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred             ccCceEEEEEecCC-CCceeeeccCCCCcccccceECCCCCEE
Confidence                5699999987 554  44445788899999999999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.3e-21  Score=159.75  Aligned_cols=237  Identities=11%  Similarity=-0.005  Sum_probs=159.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeC--CCCceeEEEeecCCCcceEEEEEeeC--CCCCEEEEEe-
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS--IGLNKVISQG-   83 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~-   83 (270)
                      +++.++..+.. +.+++|+|+|++|++++.|+.|.+||+  .+++.+..+...   ..+..++|+|.  .+|++|++++ 
T Consensus       170 ~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          170 KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC---CCcceEEeCCCcCCCCCEEEEEEc
Confidence            55666763323 899999999999999999999999999  888888888754   44799999971  1467888777 


Q ss_pred             CCCcEEEEEccCCccCCCCccceeccc----------c-eEEEEeecc--CCccceecCCCCceEEEeccCceeee-cc-
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNS----------Y-HFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDT-DS-  148 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  148 (270)
                      .+++|.+||..+++.+.    .+....          . ....+....  ..........+.+.+|+....+.+.. .+ 
T Consensus       246 ~~~~v~v~D~~t~~~~~----~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             ESSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             cCCeEEEEeccccccce----eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            58999999998886544    222210          1 111222221  11112222344555677766543321 11 


Q ss_pred             CCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          149 LCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       149 ~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      .+...  ++|+|+|+++++ ++..+++|.+||+.+++++..+..       + ..+..+....+  ++|+  .++ ++++
T Consensus       322 ~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D~~tg~l~~~i~~-------g-~~ph~g~g~~~--~~p~--~g~-~~~s  387 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDV-------G-KTPHPGRGANF--VHPK--YGP-VWST  387 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEE-EEGGGTEEEEEETTTTEEEEEEEC-------S-SSBCCTTCEEE--EETT--TEE-EEEE
T ss_pred             cCcCccCceECCCCCEEEE-EecCCCeEEEEECCCCeEEEeecc-------C-CCCCCCCCccc--CCCC--Ccc-EEEe
Confidence            11111  899999998876 444578999999999998888873       1 11111111111  3563  354 7777


Q ss_pred             ec-CCCcEEEEEcCCC------CcceeeeeccCCCeeEEEeecCCCce
Q 024245          227 GY-EDGSILVWDIRNP------GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       227 ~~-~dg~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +. .|++|.+||+.+.      .++++++.+|...+..++|+|||++|
T Consensus       388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE
T ss_pred             ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE
Confidence            75 6899999999862      57889999998889999999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2e-20  Score=145.19  Aligned_cols=230  Identities=7%  Similarity=0.008  Sum_probs=148.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.+..+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.  .+..+++|+|  ++++|+++..++
T Consensus        31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~~~~~  105 (331)
T 3u4y_A           31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ--SSMADVDITP--DDQFAVTVTGLN  105 (331)
T ss_dssp             CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS--SCCCCEEECT--TSSEEEECCCSS
T ss_pred             ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC--CCccceEECC--CCCEEEEecCCC
Confidence            4455555566667 9999999996665554 88999999999887 66666665  3455599999  999998555553


Q ss_pred             ---cEEEEEccCCccCCCCccceecccceEEEEeeccCC--ccceecCCCC-ceEEEeccCcee----eeccC-CCCC--
Q 024245           87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEP-KDCYEREVGETV----DTDSL-CDSK--  153 (270)
Q Consensus        87 ---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~----~~~~~-~~~~--  153 (270)
                         .|.+||+.+++...    .+..... ...+.+....  .......... ..+|++.....+    ..... +...  
T Consensus       106 ~~~~i~v~d~~~~~~~~----~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  180 (331)
T 3u4y_A          106 HPFNMQSYSFLKNKFIS----TIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN  180 (331)
T ss_dssp             SSCEEEEEETTTTEEEE----EEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred             CcccEEEEECCCCCeEE----EEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence               89999999886543    2222211 1222332222  2222223344 667777643322    11111 1122  


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                      ++|+|+|+++++ ++..++.|++||+.+++.   +..+..             ...+..++ |+|   +|+.++++...+
T Consensus       181 ~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~~~~-~sp---dg~~l~v~~~~~  242 (331)
T 3u4y_A          181 ITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAVGT-------------NNLPGTIV-VSR---DGSTVYVLTEST  242 (331)
T ss_dssp             EEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEEEC-------------SSCCCCEE-ECT---TSSEEEEECSSE
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeeccC-------------CCCCceEE-ECC---CCCEEEEEEcCC
Confidence            999999987776 455689999999999888   666662             23455676 999   465344555568


Q ss_pred             CcEEEEEcCCCCcc--eeeeecc----CC---CeeEEEeecCCCce
Q 024245          231 GSILVWDIRNPGIP--LTAMKVH----LE---PGLECSMWRNPITM  267 (270)
Q Consensus       231 g~i~vwd~~~~~~~--~~~~~~~----~~---~v~~~~~s~~g~~l  267 (270)
                      +.|.+||+.+ ++.  +..+..+    ..   ....++|+|||++|
T Consensus       243 ~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  287 (331)
T 3u4y_A          243 VDVFNFNQLS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL  287 (331)
T ss_dssp             EEEEEEETTT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred             CEEEEEECCC-CceeeecccccccccCCCCcccccceEECCCCCEE
Confidence            8999999998 555  3333322    22   23568999999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=4.1e-21  Score=154.26  Aligned_cols=186  Identities=11%  Similarity=0.064  Sum_probs=129.9

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC----------ceeEEE-----eecCCCcceEEEEEeeCCCCCEEE--
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSS-----WVHSAAHGIVSVATGPSIGLNKVI--   80 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~--   80 (270)
                      ...++.+++++++.++++++.|+ ++||+....          ..+...     ..+.  ..|.+++|+|  ++++|+  
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~sp--dg~~lav~  110 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK--FPIHHLALSC--DNLTLSAC  110 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS--SCEEEEEECT--TSCEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC--CcccEEEEcC--CCCEEEEE
Confidence            44689999999999999999988 999876421          011100     1122  5699999999  999999  


Q ss_pred             --EEeCCCcEEEEEccCCccCC----CCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-
Q 024245           81 --SQGRDGTVKCWDIENGGLSS----NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (270)
Q Consensus        81 --s~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (270)
                        +++.|+.|++||+++.....    .++..+.                                       .+.+|.. 
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~h~~~  151 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK---------------------------------------LLKDAGGM  151 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE---------------------------------------CCCSGGGS
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeee---------------------------------------ccCCCCCc
Confidence              78899999999997641100    0000000                                       1112222 


Q ss_pred             ---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                         ++|+|+...+++ +++.||+|++||++++..+....        +|    ...+.+++ |+|+   |. +|++|+.|
T Consensus       152 V~~v~~~p~~~~~la-s~s~Dg~v~iwD~~~~~~~~~~~--------~~----~~~v~~v~-wspd---g~-~lasgs~d  213 (434)
T 2oit_A          152 VIDMKWNPTVPSMVA-VCLADGSIAVLQVTETVKVCATL--------PS----TVAVTSVC-WSPK---GK-QLAVGKQN  213 (434)
T ss_dssp             EEEEEECSSCTTEEE-EEETTSCEEEEEESSSEEEEEEE--------CG----GGCEEEEE-ECTT---SS-CEEEEETT
T ss_pred             eEEEEECCCCCCEEE-EEECCCeEEEEEcCCCcceeecc--------CC----CCceeEEE-EcCC---CC-EEEEEcCC
Confidence               679998545555 56679999999999887655554        44    34678888 9995   55 89999999


Q ss_pred             CcEEEEEcCCCCcceeeeecc-------CCCeeEEEeecCCCce
Q 024245          231 GSILVWDIRNPGIPLTAMKVH-------LEPGLECSMWRNPITM  267 (270)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l  267 (270)
                      |.|++||++  ++....+..|       ...|.+++|++++.++
T Consensus       214 g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          214 GTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             SCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             CcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            999999998  3444444433       2379999999998887

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=1.5e-20  Score=150.41  Aligned_cols=220  Identities=10%  Similarity=-0.001  Sum_probs=146.8

Q ss_pred             cccccccccEEEEEEeC--------------CCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCCcceEEEEEe
Q 024245           12 AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATG   71 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~   71 (270)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+.. .....+..|.  ..|.+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~--~~v~~~~~S  187 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP--QPLMSPAWS  187 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES--SCEEEEEEC
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC--CcceeeEEc
Confidence            44777877777777664              15566665554      7999999974 5566777777  669999999


Q ss_pred             eCCCCCEEEEEeCCC---cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec----CCCC--ceEEEeccCc
Q 024245           72 PSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ----ANEP--KDCYEREVGE  142 (270)
Q Consensus        72 ~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~  142 (270)
                      |  +|++|++++.++   .|++||+.+++..     .+..+.....  .+.+++....+.    ..+.  ...|++.+++
T Consensus       188 p--dg~~la~~s~~~~~~~i~~~d~~tg~~~-----~l~~~~~~~~--~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          188 P--DGSKLAYVTFESGRSALVIQTLANGAVR-----QVASFPRHNG--APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             T--TSSEEEEEECTTSSCEEEEEETTTCCEE-----EEECCSSCEE--EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             C--CCCEEEEEEecCCCcEEEEEECCCCcEE-----EeecCCCccc--CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            9  999999999875   9999999988643     2222222222  233333332211    1222  4556777665


Q ss_pred             eeeeccCCCCC----eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245          143 TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (270)
Q Consensus       143 ~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (270)
                      ..  .+..+..    ++|+|+|+.++++ +..++  .|.+||+.+++.. .+.        .+    ...+..+. |+|+
T Consensus       259 ~~--~l~~~~~~~~~~~~spdg~~l~~~-s~~~g~~~i~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd  321 (415)
T 2hqs_A          259 IR--QVTDGRSNNTEPTWFPDSQNLAFT-SDQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD  321 (415)
T ss_dssp             EE--ECCCCSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCCE-ECC--------CS----SSEEEEEE-ECTT
T ss_pred             EE--eCcCCCCcccceEECCCCCEEEEE-ECCCCCcEEEEEECCCCCEE-EEe--------cC----CCcccCeE-ECCC
Confidence            42  3344443    8999999877764 33345  6888899877643 333        22    23566777 9994


Q ss_pred             CCCCceEEEEecCC---CcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          217 KSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       217 ~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                         |+ +|++++.+   ..|++||+.+ ++. ..+..+. .+.+++|+|||++|
T Consensus       322 ---G~-~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          322 ---GK-FMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             ---SS-EEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SCEEEEECTTSSEE
T ss_pred             ---CC-EEEEEECcCCceEEEEEECCC-CCE-EEecCCC-CcCCeEEcCCCCEE
Confidence               55 67666653   5899999997 554 4455554 89999999999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.3e-19  Score=141.05  Aligned_cols=234  Identities=12%  Similarity=0.070  Sum_probs=141.2

Q ss_pred             cccccEEEEEEeCCCCEEEEecCC-CcEEEEeCC--CCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK   89 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~d-g~i~vwd~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~   89 (270)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  +++.  +..+..+   ..+..++|+|  ++++|++++ .++.|.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDH--QGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECT--TSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEcC--CCCEEEEEecCCCeEE
Confidence            467789999999999988888776 999999997  5543  3344433   3588999999  988876665 488999


Q ss_pred             EEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecCCCCceEEEecc-Cceee-----ecc-CCCCC--eEecCC
Q 024245           90 CWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVD-----TDS-LCDSK--DDVPAE  159 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~-~~~~~--~~~s~~  159 (270)
                      +||+..+... .....+.... .....++.................+|++.. ++...     ... .+...  ++|+|+
T Consensus       110 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EEECCCCccc-cccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            9999532211 0111222111 111112222211111121345567788876 43321     111 12111  899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCC--cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      ++++++ ++..++.|.+||+..  ++.  ...+...    ..++.  ....+..++ |+|+   |+.+++++..++.|.+
T Consensus       189 g~~l~~-~~~~~~~i~~~~~~~~~g~~~~~~~~~~~----~~~~~--~~~~~~~i~-~s~d---g~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          189 EQYAYC-VNELNSSVDVWELKDPHGNIECVQTLDMM----PENFS--DTRWAADIH-ITPD---GRHLYACDRTASLITV  257 (343)
T ss_dssp             SSEEEE-EETTTTEEEEEESSCTTSCCEEEEEEECS----CTTCC--SCCCEEEEE-ECTT---SSEEEEEETTTTEEEE
T ss_pred             CCEEEE-EeCCCCEEEEEEecCCCCcEEEEeecccc----Ccccc--ccCCccceE-ECCC---CCEEEEEecCCCEEEE
Confidence            987776 455689999999953  332  2222200    00111  122445676 9994   5535557778999999


Q ss_pred             EEcCCC---CcceeeeeccCCCeeEEEeecCCCce
Q 024245          236 WDIRNP---GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       236 wd~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ||+...   .+.+..+..+.. +.+++|+|+|++|
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l  291 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYL  291 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEE
T ss_pred             EEEcCCCCceEEeeeecCCCc-cceEEECCCCCEE
Confidence            999831   234445554444 8999999999854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=3.7e-19  Score=139.12  Aligned_cols=221  Identities=11%  Similarity=0.077  Sum_probs=151.4

Q ss_pred             ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCc-------ceEEEEEeeCCCCCEEEEEe--CCCcE
Q 024245           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAH-------GIVSVATGPSIGLNKVISQG--RDGTV   88 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l~s~~--~d~~i   88 (270)
                      ..+..++|+|+|+++ ++...++.|.+||..+++.+..+..+....       .+.+++|+|  +++++++++  .++.|
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVI  166 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceE
Confidence            457789999999854 555668999999999999888877643211       268899999  988877665  47899


Q ss_pred             EEEEccCCccCCCCcccee--cccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC---CCCC----eEecCC
Q 024245           89 KCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---CDSK----DDVPAE  159 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~s~~  159 (270)
                      .+||+.+++...    .+.  ........++...... ......+....|+..+++.......   ++..    ++|+|+
T Consensus       167 ~~~d~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          167 WVVDGGNIKLKT----AIQNTGKMSTGLALDSEGKRL-YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             EEEETTTTEEEE----EECCCCTTCCCCEEETTTTEE-EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred             EEEcCCCCceEE----EecCCCCccceEEECCCCCEE-EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence            999999886543    222  1111222222222111 1122234455678877766544332   1222    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      ++.+++ +...++.|.+||+.+++.+..+..       +.       ...+. |+|+   |+.++++...++.|.+||+.
T Consensus       242 g~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------~~-------~~~~~-~s~d---g~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          242 RQRAFI-TDSKAAEVLVVDTRNGNILAKVAA-------PE-------SLAVL-FNPA---RNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             TTEEEE-EESSSSEEEEEETTTCCEEEEEEC-------SS-------CCCEE-EETT---TTEEEEEETTTTEEEEEETT
T ss_pred             CCEEEE-EeCCCCEEEEEECCCCcEEEEEEc-------CC-------CceEE-ECCC---CCEEEEEECCCCeEEEEECC
Confidence            998776 445579999999999998888773       11       13455 9984   55356666689999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      + ++.+..+... ..+.+++|+|||++|
T Consensus       303 ~-~~~~~~~~~~-~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          303 S-YKVVKTFDTP-THPNSLALSADGKTL  328 (353)
T ss_dssp             T-TEEEEEEECC-SEEEEEEECTTSCEE
T ss_pred             C-CeEEEEEecC-CCCCeEEEcCCCCEE
Confidence            8 7777777753 478999999999854

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=2e-20  Score=150.24  Aligned_cols=163  Identities=9%  Similarity=0.060  Sum_probs=115.7

Q ss_pred             ccccEEEEEEeCCCCEEE----EecCCCcEEEEeCCCC--------ce---eEEEeecCCCcceEEEEEeeCCC-CCEEE
Q 024245           17 HRASVTDVCFHQTKPILF----AGTTGGELRIWDTVQH--------RT---VSSSWVHSAAHGIVSVATGPSIG-LNKVI   80 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~----s~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~l~   80 (270)
                      |...|++++|+|+|++|+    +|+.|+.|+|||+.++        +.   +..+.+|.  ..|.+++|+|  + +++|+
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~~la  166 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNP--TVPSMVA  166 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECS--SCTTEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECC--CCCCEEE
Confidence            567899999999999999    8999999999998754        22   34455566  6699999999  6 78999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCC
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  160 (270)
                      +++.||+|++||++++....    ....+......                                      ++|+|+|
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~----~~~~~~~~v~~--------------------------------------v~wspdg  204 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVC----ATLPSTVAVTS--------------------------------------VCWSPKG  204 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEE----EEECGGGCEEE--------------------------------------EEECTTS
T ss_pred             EEECCCeEEEEEcCCCccee----eccCCCCceeE--------------------------------------EEEcCCC
Confidence            99999999999998763211    11111111110                                      5699999


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc---CCCceeeeeeecCCCCCCCceEEEEecCCCc-----
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-----  232 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~-----  232 (270)
                      ++++  +|+.||.|++||++ ++....+.        .|..   .....+.++. |+++   +.++++....||.     
T Consensus       205 ~~la--sgs~dg~v~iwd~~-~~~~~~~~--------~~~~~~~~~~~~v~~v~-w~~~---~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          205 KQLA--VGKQNGTVVQYLPT-LQEKKVIP--------CPPFYESDHPVRVLDVL-WIGT---YVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             SCEE--EEETTSCEEEECTT-CCEEEEEC--------CCTTCCTTSCEEEEEEE-EEET---TEEEEEEEETTCCSSSCC
T ss_pred             CEEE--EEcCCCcEEEEccC-Cccccccc--------CCcccCCCCceeEEEEE-EecC---ceEEEEEccCCCccCCCC
Confidence            8665  46679999999998 66666665        2321   1123678888 9873   4423344445543     


Q ss_pred             -EEEEEcCC
Q 024245          233 -ILVWDIRN  240 (270)
Q Consensus       233 -i~vwd~~~  240 (270)
                       +++||++.
T Consensus       270 ~v~i~~l~~  278 (434)
T 2oit_A          270 DVVMALLPK  278 (434)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEEecc
Confidence             89999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=9.8e-20  Score=156.01  Aligned_cols=223  Identities=6%  Similarity=-0.078  Sum_probs=150.8

Q ss_pred             cccEEEEEEeCCCCEEEEecC-CC-----cEEEEeCCCCceeEEEeecCCC----------------------cceEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA   69 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~----------------------~~v~~~~   69 (270)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+...                      ..|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     8999999999887777654421                      2378999


Q ss_pred             EeeCCCCCEEEEEeCCCcEEEEEccCC---ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeee
Q 024245           70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (270)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (270)
                      |+|  +|++|++++. +.|.+||+.++   ...     .+..+........+................+|++..++....
T Consensus       116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-----~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVR-----QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECT--TSSEEEEEET-TEEEEEESSSCSTTSCC-----BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             ECC--CCCEEEEEeC-CcEEEEECCCCCcceEE-----EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            999  9999998886 89999999987   432     222222222222222222222223334566678777665443


Q ss_pred             ccCCC-------------------CCeEecCCCCeEEEEecCCCc---------------------------------eE
Q 024245          147 DSLCD-------------------SKDDVPAEGPKYMAVAGEQLS---------------------------------EV  174 (270)
Q Consensus       147 ~~~~~-------------------~~~~~s~~~~~~~~~~~~~d~---------------------------------~i  174 (270)
                      ...+.                   ..++|||||+.++.++.  |+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            33322                   22899999998775432  22                                 78


Q ss_pred             EEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-----CCCcEEEEEcCCCCcceeee
Q 024245          175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-----EDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       175 ~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~  248 (270)
                      ++||+.+ ++......        +  ......+..+. | |+   |+ +|++++     .+..|++||+.+ ++....+
T Consensus       266 ~~~d~~~~~~~~~~~~--------~--~~~~~~~~~~~-~-pD---g~-~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~  328 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDL--------G--KEQDIYLARVN-W-RD---PQ-HLSFQRQSRDQKKLDLVEVTLAS-NQQRVLA  328 (741)
T ss_dssp             EEECSSTTCCCEEECC--------C--SCSSEEEEEEE-E-EE---TT-EEEEEEEETTSSEEEEEEEETTT-CCEEEEE
T ss_pred             EEEECCCCCceEEecC--------C--CCcceEEEEEE-e-CC---CC-EEEEEEecccCCeEEEEEEECCC-CceEEEE
Confidence            8999988 77544332        1  01245677887 9 94   55 666544     357899999998 7766666


Q ss_pred             eccCC----CeeEEEeecCCCce
Q 024245          249 KVHLE----PGLECSMWRNPITM  267 (270)
Q Consensus       249 ~~~~~----~v~~~~~s~~g~~l  267 (270)
                      ..+..    .+.+++|+|||+++
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEE
T ss_pred             EcCCCCcCCcCCceEECCCCeEE
Confidence            65543    45789999999854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=1.9e-18  Score=135.16  Aligned_cols=224  Identities=11%  Similarity=0.059  Sum_probs=153.1

Q ss_pred             ccccEEEEEEeCCCCEEEEecC-------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcE
Q 024245           17 HRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTV   88 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i   88 (270)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+...   ..+..++|+|  ++++++ +...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINN--TTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEET--TTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECC--CCCEEEEEecCCCEE
Confidence            4567889999999998887764       568999999999988888764   3378899999  888555 55668999


Q ss_pred             EEEEccCCccCCCCccceeccc---------ceEEEEeeccCCccceecC---CCCceEEEeccCceeeecc-CCCCC--
Q 024245           89 KCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDS-LCDSK--  153 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~--  153 (270)
                      .+||..+++...    .+....         .....+.+...........   ......|+..+++...... .+...  
T Consensus       114 ~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          114 TAIDAKTGEVKG----RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             EEEETTTCCEEE----EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             EEEeCCCCeeEE----EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            999999887543    222211         1122233332222222222   3446678887776655433 23222  


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      ++|+|+++.++++  +.++.|.+||+.+++.+..+..        ...........++ |+|+   |+.++++...++.|
T Consensus       190 ~~~s~dg~~l~~~--~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~-~s~d---g~~l~~~~~~~~~v  255 (353)
T 3vgz_A          190 LALDSEGKRLYTT--NADGELITIDTADNKILSRKKL--------LDDGKEHFFINIS-LDTA---RQRAFITDSKAAEV  255 (353)
T ss_dssp             CEEETTTTEEEEE--CTTSEEEEEETTTTEEEEEEEC--------CCSSSCCCEEEEE-EETT---TTEEEEEESSSSEE
T ss_pred             EEECCCCCEEEEE--cCCCeEEEEECCCCeEEEEEEc--------CCCCCCcccceEE-ECCC---CCEEEEEeCCCCEE
Confidence            9999999987753  3479999999999998877762        1111233556677 9985   54345555566999


Q ss_pred             EEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          234 LVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      .+||+.+ ++.+..+....  ...++|+|+|++
T Consensus       256 ~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~  285 (353)
T 3vgz_A          256 LVVDTRN-GNILAKVAAPE--SLAVLFNPARNE  285 (353)
T ss_dssp             EEEETTT-CCEEEEEECSS--CCCEEEETTTTE
T ss_pred             EEEECCC-CcEEEEEEcCC--CceEEECCCCCE
Confidence            9999998 77777776533  367999999984

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=3.1e-19  Score=139.51  Aligned_cols=234  Identities=13%  Similarity=0.127  Sum_probs=142.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecC---CCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK   89 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~   89 (270)
                      .+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+.  ..+..++|+|  ++++|++++ .++.|.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~sp--dg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDE--ARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEET--TTTEEEEEETTTTEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECC--CCCEEEEEeCCCCEEE
Confidence            3556778899999998 555443   6899999997765  333444454  5588999999  999888877 789999


Q ss_pred             EEEccC-CccCCCCccceeccc---------ceEEEEeeccCCc-cceecCCCCceEEEec-cCceeee---cc-CCCCC
Q 024245           90 CWDIEN-GGLSSNPSLTIKTNS---------YHFCKLSLVKEPY-ANAKQANEPKDCYERE-VGETVDT---DS-LCDSK  153 (270)
Q Consensus        90 ~wd~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~  153 (270)
                      +|++.. +....  +..+....         .....+.+..... ...........+|++. .++....   .. .+...
T Consensus       112 v~~~~~~g~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p  189 (347)
T 3hfq_A          112 VMKIAADGALTL--TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP  189 (347)
T ss_dssp             EEEECTTSCEEE--EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred             EEEeCCCCCeee--cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence            999963 22211  11111110         0122222322222 1122223446678887 3332211   11 11111


Q ss_pred             --eEecCCCCeEEEEecCCCceEEEEeCCC--cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       154 --~~~s~~~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                        ++|+|+|+++++ ++..++.|.+|++..  ++.  +..+...     ... ......+..++ |+|   ||+.++++.
T Consensus       190 ~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-----~~~-~~~~~~~~~i~-~sp---dG~~l~v~~  258 (347)
T 3hfq_A          190 RHLVFSPDGQYAFL-AGELSSQIASLKYDTQTGAFTQLGIVKTI-----PAD-YTAHNGAAAIR-LSH---DGHFLYVSN  258 (347)
T ss_dssp             EEEEECTTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESS-----CTT-CCSCCEEEEEE-ECT---TSCEEEEEE
T ss_pred             ceEEECCCCCEEEE-EeCCCCEEEEEEecCCCCceEEeeeeeec-----CCC-CCCCCcceeEE-ECC---CCCEEEEEe
Confidence              899999987776 455689999999874  442  2222210     000 00113466777 999   466344677


Q ss_pred             cCCCcEEEEEcCCCC--cceeeeeccCCCeeEEEeecCCCce
Q 024245          228 YEDGSILVWDIRNPG--IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..++.|.+||+...+  +.+..+..+...+.+++|+|||++|
T Consensus       259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          259 RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence            779999999997422  4555666666778999999999865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=1.2e-18  Score=135.11  Aligned_cols=219  Identities=11%  Similarity=0.078  Sum_probs=140.9

Q ss_pred             EEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEEccCCcc-CCC
Q 024245           25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGL-SSN  101 (270)
Q Consensus        25 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~  101 (270)
                      .|.+++. .+++++.++.|.+||+.+++.+..+..+.  ..+ .++|+|  +++++++++. ++.|.+||+.+++. .. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~-   77 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVV-   77 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEE-
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEE-
Confidence            4555444 57788889999999999999888877654  446 999999  9887766555 88999999998864 22 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCC----CceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCCCce-E
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANE----PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE-V  174 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~-i  174 (270)
                         .+.........+.+.............    ...+|++..++.+.....+...  ++|+|+|++++++. ..++. |
T Consensus        78 ---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~i  153 (331)
T 3u4y_A           78 ---AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID-RSSANTV  153 (331)
T ss_dssp             ---EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE-ETTTTEE
T ss_pred             ---ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe-cCCCceE
Confidence               222222111112222222222222222    5667888877765543333322  99999998877644 44567 9


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc---eeeeecc
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVH  251 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~  251 (270)
                      .+|++.....+.....       .. .........+. |+|+   |+.+++++..++.|++||+.+ ++.   +..+.. 
T Consensus       154 ~~~~~~~~g~~~~~~~-------~~-~~~~~~~~~~~-~spd---g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~-  219 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQ-------EF-ISGGTRPFNIT-FTPD---GNFAFVANLIGNSIGILETQN-PENITLLNAVGT-  219 (331)
T ss_dssp             EEEEECTTCCEEEEEE-------EE-ECSSSSEEEEE-ECTT---SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-
T ss_pred             EEEEECCCCcEeecCC-------cc-ccCCCCccceE-ECCC---CCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-
Confidence            9999875443221110       00 00122356676 9994   554566667799999999998 676   777764 


Q ss_pred             CCCeeEEEeecCCCce
Q 024245          252 LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~l  267 (270)
                      ...+..++|+|||++|
T Consensus       220 ~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             SSCCCCEEECTTSSEE
T ss_pred             CCCCceEEECCCCCEE
Confidence            4678899999999854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.84  E-value=1.3e-18  Score=143.47  Aligned_cols=236  Identities=8%  Similarity=0.026  Sum_probs=161.2

Q ss_pred             CcccccccccccEEEEEEeC----CCCEEEEecC-CCcEEEEeCCCCceeEEEeecC---------CCcceEEEEEeeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQ----TKPILFAGTT-GGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATGPSI   74 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~   74 (270)
                      +++.++. +...+..++|+|    +|++|++++. +++|.|||..++++++.+..+.         ....+.++.++|  
T Consensus       213 ~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~--  289 (543)
T 1nir_A          213 TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH--  289 (543)
T ss_dssp             EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS--
T ss_pred             cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC--
Confidence            4566666 455789999999    9999999885 8999999999999998886531         113589999999  


Q ss_pred             CCC-EEEEEeCCCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC--
Q 024245           75 GLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC--  150 (270)
Q Consensus        75 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  150 (270)
                      ++. ++++...++.|.+||+.+.+...  +..+... ......++...............+.+||..+++.......+  
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence            655 45677889999999998765322  1122211 11112222222222222233456777999888766543322  


Q ss_pred             -CCC--eE-ecCCCCeEEEEecCCCceEEEEeCCC-------cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          151 -DSK--DD-VPAEGPKYMAVAGEQLSEVEIWDLNT-------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       151 -~~~--~~-~s~~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                       |..  .. ++|++..++++....|++|.+||+.+       .++++++.        +|.    .....+. |+|+   
T Consensus       368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--------~~g----~~~~~v~-~~pd---  431 (543)
T 1nir_A          368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--------GQG----GGSLFIK-THPK---  431 (543)
T ss_dssp             BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--------CSC----SCCCCEE-CCTT---
T ss_pred             CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--------cCC----CCceEEE-cCCC---
Confidence             433  33 46886666664433579999999998       78888888        553    2455676 9995   


Q ss_pred             CceEEEEec-------CCCcEEEEEcCCCCcce-eee--------eccCCCeeEEEeecCCCce
Q 024245          220 GFVNVLAGY-------EDGSILVWDIRNPGIPL-TAM--------KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       220 g~~~l~~~~-------~dg~i~vwd~~~~~~~~-~~~--------~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++ +|++++       .+++|.+||+.+ .+.. ..+        ..+...+..++|+|||+.|
T Consensus       432 g~-~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~  493 (543)
T 1nir_A          432 SS-HLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  493 (543)
T ss_dssp             CC-EEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred             CC-cEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence            55 888876       277999999999 5544 554        3456789999999999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=9e-20  Score=152.15  Aligned_cols=221  Identities=9%  Similarity=-0.031  Sum_probs=148.1

Q ss_pred             ccccEEEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~wd   92 (270)
                      +..+|++++|+|||+.||+++. ||+++||++..++..+....+.  ..+..++|+|  + +.+++++.   +...++|.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~--~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPI--NSVLDPHYGV--G-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCC--SEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccc--cccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence            3568999999999999999887 9999999997666554433332  3589999999  8 77777765   55667776


Q ss_pred             ccC--CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCC
Q 024245           93 IEN--GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  170 (270)
                      +..  ..... .+....  ......++..+..............+|++.+++...........++|+|||+.++.++  .
T Consensus        95 ~~~~~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~--~  169 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG--F  169 (582)
T ss_dssp             EETTSTTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE--E
T ss_pred             EeccCCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE--E
Confidence            654  21111 111111  2223344444443333333444445888887764432221112389999999776432  2


Q ss_pred             C----ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcc
Q 024245          171 L----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIP  244 (270)
Q Consensus       171 d----~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~  244 (270)
                      +    +.|++||+.+++.. .+.        +|    ...+..++ |+|   ||+ +|+++..++  .|++||+.+ +++
T Consensus       170 ~~~~~~~i~~~d~~~g~~~-~l~--------~~----~~~~~~~~-~Sp---DG~-~l~~~~~~~~~~i~~~d~~~-~~~  230 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLR-VFD--------SG----EGSFSSAS-ISP---GMK-VTAGLETAREARLVTVDPRD-GSV  230 (582)
T ss_dssp             EETTEEEEEEEETTTCCCE-EEC--------CS----SCEEEEEE-ECT---TSC-EEEEEECSSCEEEEEECTTT-CCE
T ss_pred             cCCCCeEEEEEcCCCCCce-Eee--------cC----CCccccce-ECC---CCC-EEEEccCCCeeEEEEEcCCC-CcE
Confidence            4    67999999988765 455        34    34567777 999   466 788888888  899999998 666


Q ss_pred             eeeeeccCCCeeEEE--------eecCCCce
Q 024245          245 LTAMKVHLEPGLECS--------MWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~--------~s~~g~~l  267 (270)
                      . .+.+|...+.+++        |+|||.++
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence            5 7777877788888        99999543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=6.6e-19  Score=150.90  Aligned_cols=225  Identities=12%  Similarity=-0.016  Sum_probs=146.4

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..+.  ..+..++|+|  +|++|+.++ ++.|.+||+.+++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC--cccccccCCC--CCCEEEEEe-CCcEEEEecCCCC
Confidence            4889999999999999886 899999999873  344555555  5599999999  999999887 4689999998876


Q ss_pred             cCCCCccceeccc----------------ceEEEEeeccCCccceecCCC------------------------------
Q 024245           98 LSSNPSLTIKTNS----------------YHFCKLSLVKEPYANAKQANE------------------------------  131 (270)
Q Consensus        98 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~------------------------------  131 (270)
                      ...  +.......                .....++.++.........+.                              
T Consensus       184 ~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          184 QMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             EEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            432  11111000                011222222222111111111                              


Q ss_pred             --CceEEEecc-CceeeeccC-CCCC----eEecCCCCeEEEEec---CCCceEEEEeCCCcceeeeeccCcCCCCCCcc
Q 024245          132 --PKDCYEREV-GETVDTDSL-CDSK----DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (270)
Q Consensus       132 --~~~~~~~~~-~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~  200 (270)
                        ...+|++.. ++....... .+..    ++| |||+.+++.+.   ..+..|++||+.+++....+.        .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------~~~  332 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH--------ETS  332 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE--------EEC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE--------cCC
Confidence              233456655 544332222 2333    899 99998876442   246789999999998776665        232


Q ss_pred             cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE-EeecCCCce
Q 024245          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC-SMWRNPITM  267 (270)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l  267 (270)
                      ......+..+. |+|   ||+ ++++++.||.++||.+...+. ...+..+...|.++ .|+|||+.|
T Consensus       333 ~~~~~~~~~~~-~sp---dg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l  394 (741)
T 2ecf_A          333 PTWVPLHNSLR-FLD---DGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA  394 (741)
T ss_dssp             SSCCCCCSCCE-ECT---TSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred             CCcCCcCCceE-ECC---CCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence            11111234566 999   466 889999999888887764355 77788788888887 599999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=1.5e-19  Score=154.51  Aligned_cols=228  Identities=8%  Similarity=-0.019  Sum_probs=146.5

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-cceEEEEEeeCCCCCEEEEEeCC---------CcE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV   88 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d---------~~i   88 (270)
                      ..+.+++|+|||+++++ +.||.|++||+.+++....+..+... ..|.+++|+|  +|++|++++.+         +.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence            34778999999997776 78999999999999888777665420 1489999999  99999988764         778


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccce--ecCCCCceEEEeccCceeeeccCCC---------------
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA--KQANEPKDCYEREVGETVDTDSLCD---------------  151 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------  151 (270)
                      .+||+.+++...  +.....+....  ..+.+++.+..  ........+|++..++.......++               
T Consensus        94 ~~~d~~~~~~~~--l~~~~~~~~~~--~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           94 VLSKIPHGDPQS--LDPPEVSNAKL--QYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEESSSCCCEE--CCCTTCCSCCC--SBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             EEEECCCCceEe--ccCCccccccc--cccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            899999886421  11111111111  12333333322  2222345556666655443322211               


Q ss_pred             ------CCeEecCCCCeEEEEecCC--------------------------------CceEEEEeCCCcceeeeeccCcC
Q 024245          152 ------SKDDVPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERCTRLHQNSC  193 (270)
Q Consensus       152 ------~~~~~s~~~~~~~~~~~~~--------------------------------d~~i~iwd~~~~~~~~~~~~~~~  193 (270)
                            ..++|||||+.++.++...                                +..|++||+.+++....+.    
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~----  245 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM----  245 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC----
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee----
Confidence                  1289999999776543210                                1279999999887656665    


Q ss_pred             CCCCCcc--cCCCceeeeeeecCCCCCCCceEEEEec----CCCcEEEEEcCCCCcceeeeec-cCCCee----EEEeec
Q 024245          194 GGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGY----EDGSILVWDIRNPGIPLTAMKV-HLEPGL----ECSMWR  262 (270)
Q Consensus       194 ~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~-~~~~v~----~~~~s~  262 (270)
                          .+.  ......+..+. |+|   ||+ +|++..    .+..|++||+.+ +++...+.. +...+.    .++|+|
T Consensus       246 ----~~~~~~~~~~~~~~~~-~Sp---Dg~-~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp  315 (723)
T 1xfd_A          246 ----PPDDPRMREYYITMVK-WAT---STK-VAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSK  315 (723)
T ss_dssp             ----CCCCGGGSSEEEEEEE-ESS---SSE-EEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred             ----CCccCCCccceeEEEE-EeC---CCe-EEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcC
Confidence                221  01134677787 999   566 665553    335799999998 666655543 334443    899999


Q ss_pred             CCCce
Q 024245          263 NPITM  267 (270)
Q Consensus       263 ~g~~l  267 (270)
                      ||+.|
T Consensus       316 dg~~l  320 (723)
T 1xfd_A          316 DGRKF  320 (723)
T ss_dssp             TSCSE
T ss_pred             CCCeE
Confidence            99865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=2.4e-18  Score=133.89  Aligned_cols=232  Identities=13%  Similarity=0.075  Sum_probs=136.7

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEec-CCCcEEEEeCCC---CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD   85 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d   85 (270)
                      +..+..+. .+..++|+|++++|++++ .++.|.+||+..   .+.+..+..+   ..+.+++|+|  ++++|++++ .+
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~  150 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISP--DNRTLWVPALKQ  150 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECT--TSSEEEEEEGGG
T ss_pred             ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECC--CCCEEEEecCCC
Confidence            33444333 788999999999776655 488999999943   3444444433   4488999999  988888776 89


Q ss_pred             CcEEEEEccC-CccCCCCcc--ceecc-cceEEEEeeccCCcccee--cCCCCceEEEecc--Cce--ee--e-ccCCCC
Q 024245           86 GTVKCWDIEN-GGLSSNPSL--TIKTN-SYHFCKLSLVKEPYANAK--QANEPKDCYEREV--GET--VD--T-DSLCDS  152 (270)
Q Consensus        86 ~~i~~wd~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~--~~--~-~~~~~~  152 (270)
                      +.|.+||+.+ ++...  ..  ..... ......+.+.........  ...+...+|++..  ++.  ..  . ...++.
T Consensus       151 ~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVA--QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  228 (343)
T ss_dssp             TEEEEEEECTTSCEEE--EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             CEEEEEEecCCCceee--ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence            9999999987 54321  11  11111 112222333222221222  2344566788743  221  11  1 111211


Q ss_pred             ---C---eEecCCCCeEEEEecCCCceEEEEeCC--C--cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          153 ---K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--T--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       153 ---~---~~~s~~~~~~~~~~~~~d~~i~iwd~~--~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                         .   ++|+|+|+++++ ++..++.|.+||+.  +  .+.+..+.        .+     ..+..++ |+|+   |+ 
T Consensus       229 ~~~~~~~i~~s~dg~~l~v-~~~~~~~i~v~d~~~~~~~~~~~~~~~--------~~-----~~~~~~~-~s~d---g~-  289 (343)
T 1ri6_A          229 DTRWAADIHITPDGRHLYA-CDRTASLITVFSVSEDGSVLSKEGFQP--------TE-----TQPRGFN-VDHS---GK-  289 (343)
T ss_dssp             SCCCEEEEEECTTSSEEEE-EETTTTEEEEEEECTTSCCEEEEEEEE--------CS-----SSCCCEE-ECTT---SS-
T ss_pred             ccCCccceEECCCCCEEEE-EecCCCEEEEEEEcCCCCceEEeeeec--------CC-----CccceEE-ECCC---CC-
Confidence               1   899999988775 45568999999998  2  23444444        11     1256676 9984   55 


Q ss_pred             EEEEec-CCCcEEEEEcCCC-C--cceeeeeccCCCeeEEEeecCCCceecC
Q 024245          223 NVLAGY-EDGSILVWDIRNP-G--IPLTAMKVHLEPGLECSMWRNPITMSEH  270 (270)
Q Consensus       223 ~l~~~~-~dg~i~vwd~~~~-~--~~~~~~~~~~~~v~~~~~s~~g~~ls~~  270 (270)
                      +|++++ .++.|.+|++... +  +.+..+.. .....+++|.|+.+..-.|
T Consensus       290 ~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~~~~~  340 (343)
T 1ri6_A          290 YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGGSHHH  340 (343)
T ss_dssp             EEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC------
T ss_pred             EEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCCcccc
Confidence            555555 7899999965521 3  23444443 3567889999987665433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=7.3e-18  Score=128.25  Aligned_cols=205  Identities=10%  Similarity=0.087  Sum_probs=130.5

Q ss_pred             EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-CccCCCCccceeccc-ce
Q 024245           35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNS-YH  112 (270)
Q Consensus        35 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~  112 (270)
                      .++.|+.|++||+.+++... +..+.  ..|.+++|+|  ++++|++++ ++.|.+||+.+ ++...    ...... ..
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~--~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~----~~~~~~~~~   86 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTP--ELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEK----VDTGFATIC   86 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEES--SCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEE----CCCTTCCCB
T ss_pred             CCCcceeEEEEeCCCCceee-eccCC--cceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceE----ecccccccc
Confidence            45678999999999887664 44455  6699999999  999999876 78999999998 65432    111111 11


Q ss_pred             EEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCC-ccee
Q 024245          113 FCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERC  185 (270)
Q Consensus       113 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~  185 (270)
                      ...+.+...........   .....+|.+.........+..+..   ++|+|+++.+++ ++..++.++||++.. +...
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY-CGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE-EEEETTEEEEEEEETTTCCE
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE-EECCCCceEEEEEECCCCcc
Confidence            11122222111111111   124556655432222222322323   789999987765 444578899998642 2233


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      ..+.        .+    ...+..+. |+|+   |+ +|+ ++..++.+++|++...+..+..+..|...+..++|+|+|
T Consensus       166 ~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          166 TRLT--------HG----EGRNDGPD-YSPD---GR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             EECC--------CS----SSCEEEEE-ECTT---SS-EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             eEcc--------cC----CCccccce-ECCC---CC-EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence            3343        22    33567777 9995   55 555 445699999999974366777888888889999999999


Q ss_pred             Cce
Q 024245          265 ITM  267 (270)
Q Consensus       265 ~~l  267 (270)
                      ++|
T Consensus       229 ~~l  231 (297)
T 2ojh_A          229 DKV  231 (297)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=8.8e-18  Score=130.39  Aligned_cols=219  Identities=10%  Similarity=0.061  Sum_probs=146.8

Q ss_pred             cEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCC---CcceEEEEEeeCCCCCEEEEEe------------
Q 024245           20 SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQG------------   83 (270)
Q Consensus        20 ~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~------------   83 (270)
                      .+..++|+|+|+++ +++..++.|.+||+.+++.+..+.....   ...+..++|+|  ++++|++++            
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccc
Confidence            47899999999765 5666788999999999988877764220   02477899999  998888876            


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC--CCeEecCCCC
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGP  161 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~  161 (270)
                      .++.|.+||+.+++...    .+.... ....+.+.......... .+...+|++.+++.......+.  ....|+|++.
T Consensus       113 ~~~~i~v~d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  186 (337)
T 1pby_B          113 QPTRVALYDAETLSRRK----AFEAPR-QITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             CCCEEEEEETTTTEEEE----EEECCS-SCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             cCceEEEEECCCCcEEE----EEeCCC-CcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCcc
Confidence            57999999998876433    222211 11112222222222222 4567778888877655433333  2278999998


Q ss_pred             eEEEEecCCCc-----------------------eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          162 KYMAVAGEQLS-----------------------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       162 ~~~~~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      .+++ ++..++                       .|.+||+.+++.. .+...      .+    ......+. |+|+  
T Consensus       187 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~------~~----~~~~~~~~-~s~d--  251 (337)
T 1pby_B          187 AVWN-QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR------IM----DVFYFSTA-VNPA--  251 (337)
T ss_dssp             CCCC-CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE------EC----SSCEEEEE-ECTT--
T ss_pred             EEee-eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC------CC----CCceeeEE-ECCC--
Confidence            7664 343334                       4689999988765 33310      11    23455677 9994  


Q ss_pred             CCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       219 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       |+ +++++  ++.|++||+.+ ++.+..+.. ...+.+++|+|||++|
T Consensus       252 -g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          252 -KT-RAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             -SS-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             -CC-EEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEE
Confidence             55 66666  79999999998 777777764 3568899999999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=6.7e-18  Score=131.04  Aligned_cols=198  Identities=13%  Similarity=0.041  Sum_probs=133.4

Q ss_pred             cEEEEEEeCCCCEEEEec------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           20 SVTDVCFHQTKPILFAGT------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .+.+++|+|+|++|++++            .++.|.+||+.+++.+..+...   ..+.+++|+|  ++++|+++  ++.
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~--~~~  155 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWAR--DGSKLYGL--GRD  155 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECT--TSSCEEEE--SSS
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECC--CCCEEEEe--CCe
Confidence            677899999999888886            5799999999998888777653   4478899999  98988877  688


Q ss_pred             EEEEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecCCC-----------------------CceEEEeccCce
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANE-----------------------PKDCYEREVGET  143 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~  143 (270)
                      |.+||+.+++...    .+.... .....++..............                       ....++...++.
T Consensus       156 i~~~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          156 LHVMDPEAGTLVE----DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             EEEEETTTTEEEE----EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             EEEEECCCCcEee----eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            9999999876532    111111 000011111111100000000                       134567766655


Q ss_pred             eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          144 VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       144 ~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      ....+..+..    ++|+|+|++++++    ++.|.+||+.+++.+..+..        .     ..+.+++ |+|+   
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~--------~-----~~~~~~~-~s~d---  290 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPL--------P-----HSYYSVN-VSTD---  290 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEEC--------S-----SCCCEEE-ECTT---
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecC--------C-----CceeeEE-ECCC---
Confidence            4322333322    8999999877653    58999999999988877762        1     2355676 9985   


Q ss_pred             CceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       220 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      |+ +|++++.++.|++||+.+ ++.+..+..+
T Consensus       291 g~-~l~~~~~~~~i~v~d~~~-~~~~~~~~~~  320 (337)
T 1pby_B          291 GS-TVWLGGALGDLAAYDAET-LEKKGQVDLP  320 (337)
T ss_dssp             SC-EEEEESBSSEEEEEETTT-CCEEEEEECG
T ss_pred             CC-EEEEEcCCCcEEEEECcC-CcEEEEEEcC
Confidence            55 777778899999999998 7777777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.6e-16  Score=124.73  Aligned_cols=229  Identities=7%  Similarity=-0.004  Sum_probs=133.7

Q ss_pred             ccccEEEEEEeCCCCEEEEecCC----CcEEEEeCCC--Ccee--EEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245           17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQ--HRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT   87 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~d----g~i~vwd~~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~   87 (270)
                      +...+..++|+|+|++|++++.+    +.|.+|++..  ++..  .....+.  .....+++    ++++|++++ .++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCE
Confidence            56677889999999999998886    7999999875  4332  2333233  34666776    346666555 6889


Q ss_pred             EEEEEccCCccCCCCcccee--cc--------cceEEEEeeccCCcccee--cCCCCceEEEeccCce------e-----
Q 024245           88 VKCWDIENGGLSSNPSLTIK--TN--------SYHFCKLSLVKEPYANAK--QANEPKDCYEREVGET------V-----  144 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~-----  144 (270)
                      |.+|++..............  ..        ......+.+.........  .......+|++.....      +     
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            99999976543321111111  00        001111222222221222  2234456677664431      1     


Q ss_pred             --eeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCC
Q 024245          145 --DTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (270)
Q Consensus       145 --~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~  217 (270)
                        .........   ++|+|+|+++++ ++..++.|.+||+.+++.  +..+..        ... .......++ |+|  
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~~~~~g~~~~~~~~~~--------~~~-~~~~~~~i~-~sp--  268 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYL-INEIGGTVIAFRYADGMLDEIQTVAA--------DTV-NAQGSGDIH-LSP--  268 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEE-EETTTCEEEEEEEETTEEEEEEEEES--------CSS-CCCCEEEEE-ECT--
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEE-EcCCCCeEEEEEecCCceEEeEEEec--------CCC-CCCCcccEE-ECC--
Confidence              111221222   899999987765 454579999999987654  233321        111 112345676 999  


Q ss_pred             CCCceEEEEec-C-CCcEEEEEcCC-CCc--ceeeeeccCCCeeEEEeecCCCce
Q 024245          218 SQGFVNVLAGY-E-DGSILVWDIRN-PGI--PLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       218 ~~g~~~l~~~~-~-dg~i~vwd~~~-~~~--~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       ||+ +|+++. . ++.|.+|++.. .++  .+..+.. ...+.+++|+|||++|
T Consensus       269 -dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l  320 (361)
T 3scy_A          269 -DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYL  320 (361)
T ss_dssp             -TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             -CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEE
Confidence             466 565544 4 58999999962 133  3444444 5578899999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=6.4e-18  Score=144.38  Aligned_cols=233  Identities=6%  Similarity=-0.010  Sum_probs=142.4

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC----------------cceEEEEEeeCCCC
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----------------HGIVSVATGPSIGL   76 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~   76 (270)
                      ...+|...+..++|||||+.||.++. +.|++||+.+++..+....+...                ..+.+++|+|  +|
T Consensus       108 ~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg  184 (723)
T 1xfd_A          108 PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DG  184 (723)
T ss_dssp             CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TS
T ss_pred             CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC--CC
Confidence            33456666899999999999999886 78999999988777665543311                1237899999  99


Q ss_pred             CEEEEEeCCC----------------------------------cEEEEEccCCccCCCCccceeccc----ceEEEEee
Q 024245           77 NKVISQGRDG----------------------------------TVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSL  118 (270)
Q Consensus        77 ~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~  118 (270)
                      +.|++++.|+                                  .|.+||+.+++...    .+....    .......+
T Consensus       185 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~~~~~~~  260 (723)
T 1xfd_A          185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL----EMMPPDDPRMREYYITMV  260 (723)
T ss_dssp             SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE----ECCCCCCGGGSSEEEEEE
T ss_pred             CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE----EeeCCccCCCccceeEEE
Confidence            9999887553                                  79999998876422    121110    01112233


Q ss_pred             ccCCccceec----CC---CCceEEEeccCceeeeccC---CC-----CCeEecCCCCeEEEEecCCCc------eEEEE
Q 024245          119 VKEPYANAKQ----AN---EPKDCYEREVGETVDTDSL---CD-----SKDDVPAEGPKYMAVAGEQLS------EVEIW  177 (270)
Q Consensus       119 ~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~---~~-----~~~~~s~~~~~~~~~~~~~d~------~i~iw  177 (270)
                      .+++++..+.    .+   ....+|++.+++.......   +.     ..++|+|||+.++++++..++      .|.+|
T Consensus       261 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~  340 (723)
T 1xfd_A          261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS  340 (723)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred             EEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence            3344433221    11   2344567776654332111   11     238999999988765455566      57777


Q ss_pred             eC-CCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE-EecCC--CcEEEEEcCCCCc-ceeeeec
Q 024245          178 DL-NTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYED--GSILVWDIRNPGI-PLTAMKV  250 (270)
Q Consensus       178 d~-~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~~~~d--g~i~vwd~~~~~~-~~~~~~~  250 (270)
                      |+ ..++.  ...+..       ++    ......+. |+|+   |+ .|+ ++..+  +.++||++...+. ....+..
T Consensus       341 d~~~~~~~~~~~~l~~-------~~----~~~~~~~~-~spd---g~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  404 (723)
T 1xfd_A          341 SSQPNSSNDNIQSITS-------GD----WDVTKILA-YDEK---GN-KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC  404 (723)
T ss_dssp             CSSCCSSSCCCCBSCC-------SS----SCEEEEEE-EETT---TT-EEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred             eccCCCCccceeEeec-------CC----eEEEeeeE-EcCC---CC-EEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence            73 43331  444441       11    11222245 9994   55 554 44555  8899999875332 3344443


Q ss_pred             ---cCCCeeEEEeecCCCcee
Q 024245          251 ---HLEPGLECSMWRNPITMS  268 (270)
Q Consensus       251 ---~~~~v~~~~~s~~g~~ls  268 (270)
                         |...+..++|+|||++|.
T Consensus       405 ~~~~~~~~~~~~~spdg~~l~  425 (723)
T 1xfd_A          405 DLVENCTYFSASFSHSMDFFL  425 (723)
T ss_dssp             TSSSSCCCCEEEECTTSSEEE
T ss_pred             cccCCCCeEEEEECCCCCEEE
Confidence               567789999999998763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.79  E-value=1.8e-17  Score=141.37  Aligned_cols=229  Identities=11%  Similarity=-0.021  Sum_probs=143.0

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC---
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN---   95 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---   95 (270)
                      ..|.+++|+|+ ..++.+. ++.|++||+.+++..... .+.  ..+.+++|+|  +|++|+++ .|+.|.+||+.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~-~~~--~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF-DTN--EETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-CCT--TCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-CCc--ccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccc
Confidence            56999999999 5555543 589999999988765443 344  4588999999  99999885 689999999998   


Q ss_pred             --CccCCCCccceeccc--------------ceEEEEeeccCCccceec-------------------------------
Q 024245           96 --GGLSSNPSLTIKTNS--------------YHFCKLSLVKEPYANAKQ-------------------------------  128 (270)
Q Consensus        96 --~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------------------------  128 (270)
                        ++...  +.......              .....++.++........                               
T Consensus       154 ~~g~~~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          154 GMSRAIA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             CCCCCEE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cCCCcEE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence              65432  11111110              011122222211111110                               


Q ss_pred             -CCCCceEEEeccCceeeeccC-CCCC----eEecCCCCeEEEEecCC---CceEEEEeCCCcceeeeeccCcCCCCCCc
Q 024245          129 -ANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNF  199 (270)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~h  199 (270)
                       ......+|++..++....... .+..    ++|+|||+.+++++...   +..|++||+.+++....+..       .+
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-------~~  304 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-------ET  304 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-------EE
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-------cc
Confidence             112344577776664433322 3333    89999999776543221   13899999998844333331       11


Q ss_pred             ccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeE-EEeecCCCce
Q 024245          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLE-CSMWRNPITM  267 (270)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l  267 (270)
                      .......+..+. |+|. .||+ ++++++.||.++||++...+..+..+..+...+.+ ++|+|||+.|
T Consensus       305 ~~~~~~~~~~~~-~sp~-~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l  370 (706)
T 2z3z_A          305 DKHYVEPLHPLT-FLPG-SNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRL  370 (706)
T ss_dssp             CSSCCCCCSCCE-ECTT-CSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEE
T ss_pred             CCCeECccCCce-eecC-CCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEE
Confidence            110111234566 9981 0345 88999999999999987436777788877777877 8999999765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=3.9e-18  Score=145.40  Aligned_cols=227  Identities=11%  Similarity=0.022  Sum_probs=142.9

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-----CceeEEEeecCCC------------cceEEEEEeeCCC
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA------------HGIVSVATGPSIG   75 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~~~~   75 (270)
                      .+..+...+.+++|+|||++|+++ .|+.|++||+.+     ++.......+...            ..+.++.|+|  +
T Consensus       115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp--D  191 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP--K  191 (706)
T ss_dssp             EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT--T
T ss_pred             EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC--C
Confidence            344566778899999999999985 679999999998     7766544433310            0148899999  9


Q ss_pred             CCEEEEEe---------------------------------CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC
Q 024245           76 LNKVISQG---------------------------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP  122 (270)
Q Consensus        76 ~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (270)
                      |++|++++                                 .+..|.+||+.+++...  +.....+.....  .+.+++
T Consensus       192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~--~~~~sp  267 (706)
T 2z3z_A          192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLT--NLSWSP  267 (706)
T ss_dssp             SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEE--EEEECT
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEe--eEEEEC
Confidence            99999887                                 44679999999876432  111111222222  233333


Q ss_pred             ccceec----CC----CCceEEEeccCceeeecc-CCC-------CCeEecC--CCCeEEEEecCCCceEEEEeCC-Ccc
Q 024245          123 YANAKQ----AN----EPKDCYEREVGETVDTDS-LCD-------SKDDVPA--EGPKYMAVAGEQLSEVEIWDLN-TAE  183 (270)
Q Consensus       123 ~~~~~~----~~----~~~~~~~~~~~~~~~~~~-~~~-------~~~~~s~--~~~~~~~~~~~~d~~i~iwd~~-~~~  183 (270)
                      ....+.    ..    .....|++.+++...... ..+       ..++|+|  +|+ +++ +++.|+.++||++. ++.
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~-~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIW-QSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEE-EECTTSSCEEEEEETTSC
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEE-EEccCCccEEEEEECCCC
Confidence            332111    11    144557777763222211 111       1279999  997 443 45668899999876 566


Q ss_pred             eeeeeccCcCCCCCCcccCCCceeee-eeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245          184 RCTRLHQNSCGGSPNFSSKGRGMCMA-VQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPGLEC  258 (270)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~  258 (270)
                      .+..+.        .+.    ..+.. +. |+|+   |+.++++++.++    .|+.||+.+ ++ ...+. +...+.++
T Consensus       346 ~~~~l~--------~~~----~~v~~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~~~~~  406 (706)
T 2z3z_A          346 LIRQVT--------KGE----WEVTNFAG-FDPK---GTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESGMHRT  406 (706)
T ss_dssp             EEEECC--------CSS----SCEEEEEE-ECTT---SSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSSEEEE
T ss_pred             EEEecC--------CCC----eEEEeeeE-EcCC---CCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCceEEE
Confidence            666666        332    23444 55 9995   553555666665    677777776 44 34444 56789999


Q ss_pred             EeecCCCce
Q 024245          259 SMWRNPITM  267 (270)
Q Consensus       259 ~~s~~g~~l  267 (270)
                      +|||||++|
T Consensus       407 ~~spdg~~l  415 (706)
T 2z3z_A          407 QLSPDGSAI  415 (706)
T ss_dssp             EECTTSSEE
T ss_pred             EECCCCCEE
Confidence            999999876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.78  E-value=1.8e-17  Score=146.91  Aligned_cols=219  Identities=9%  Similarity=0.026  Sum_probs=144.8

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC---------CCcceEEEEEe-eCCCCCEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATG-PSIGLNKVIS   81 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~l~s   81 (270)
                      ..+..|. .+...+|+|+|++|+.+ .++.|++||+... .+..+..+.         ....+.+++|+ |  +|++|++
T Consensus       239 ~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~la~  313 (1045)
T 1k32_A          239 RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDLIAF  313 (1045)
T ss_dssp             EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGCEEE
T ss_pred             eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCC--CCCEEEE
Confidence            3444454 46678999999988887 4889999999543 333444321         01358999999 9  9999988


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccc-eEEEEeeccCCccceecC-CCCceEE---EeccCceeeeccCCCCC---
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQA-NEPKDCY---EREVGETVDTDSLCDSK---  153 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~---  153 (270)
                      ++ ++.|.+|++.++....     +..+.. ..  ..+.+. ....+.. .....+|   +...++...  +.++..   
T Consensus       314 ~~-~~~i~~~~~~~~~~~~-----~~~~~~~~~--~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~~~~~~~~  382 (1045)
T 1k32_A          314 VS-RGQAFIQDVSGTYVLK-----VPEPLRIRY--VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FEENLGNVF  382 (1045)
T ss_dssp             EE-TTEEEEECTTSSBEEE-----CSCCSCEEE--EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CCCCCCSEE
T ss_pred             EE-cCEEEEEcCCCCceEE-----ccCCCcceE--EeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ecCCcccee
Confidence            87 7899999998765322     111211 22  222232 2211111 1123334   544443322  224433   


Q ss_pred             -eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-
Q 024245          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-  231 (270)
Q Consensus       154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-  231 (270)
                       ++|+|+|+.++.  ++.++.|++||+.+++....+.        +|    ...+..++ |+|+   |+ +|++++.++ 
T Consensus       383 ~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~--------~~----~~~v~~~~-~SpD---G~-~la~~~~~~~  443 (1045)
T 1k32_A          383 AMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIER--------SR----EAMITDFT-ISDN---SR-FIAYGFPLKH  443 (1045)
T ss_dssp             EEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE--------CS----SSCCCCEE-ECTT---SC-EEEEEEEECS
T ss_pred             eeEECCCCCEEEE--ECCCCeEEEEECCCCceEEecc--------CC----CCCccceE-ECCC---CC-eEEEEecCcc
Confidence             899999987664  4457899999999998777765        44    23456676 9994   65 777776544 


Q ss_pred             ---------cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          232 ---------SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       232 ---------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                               .|++||+.+ ++ ...+..|...+..++|+|||++|
T Consensus       444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l  486 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNL  486 (1045)
T ss_dssp             STTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEE
T ss_pred             ccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEE
Confidence                     899999997 55 66777788889999999999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=4e-18  Score=145.63  Aligned_cols=226  Identities=8%  Similarity=-0.046  Sum_probs=141.9

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeC---------CCcEEEE
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR---------DGTVKCW   91 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~---------d~~i~~w   91 (270)
                      .+++|+|+|++++++ .|+.|++||+.+++....+..+.. ...+.+++|+|  ||++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence            378999999766655 699999999999988777765531 01388999999  9999998876         7899999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCC--------------------
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--------------------  151 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  151 (270)
                      |+.+++...  ...+. .......+++++..  ........+.+|++..++.......++                    
T Consensus        96 d~~~g~~~~--~~~l~-~~~~~~~~SPDG~~--la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           96 DLSNGEFVR--GNELP-RPIQYLCWSPVGSK--LAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             ETTTTEECC--SSCCC-SSBCCEEECSSTTC--EEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             ECCCCcccc--ceecC-cccccceECCCCCE--EEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            999887521  01111 12222233333322  222234455667776665443322221                    


Q ss_pred             -CCeEecCCCCeEEEEecCC--------------------------------CceEEEEeCCCccee--eeeccCcCCCC
Q 024245          152 -SKDDVPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERC--TRLHQNSCGGS  196 (270)
Q Consensus       152 -~~~~~s~~~~~~~~~~~~~--------------------------------d~~i~iwd~~~~~~~--~~~~~~~~~~~  196 (270)
                       ..++|||||+.++.++...                                ...|++||+.+++..  ..+..+     
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-----  245 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-----  245 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC-----
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC-----
Confidence             2389999999876543211                                127899999987753  122100     


Q ss_pred             CCcccCCCceeeeeeecCCCCCCCceEEEEecCC----CcEEEEE----cCCCCcceeee----eccCCCee-----EEE
Q 024245          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPGL-----ECS  259 (270)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d----g~i~vwd----~~~~~~~~~~~----~~~~~~v~-----~~~  259 (270)
                       .........+..+. |+|+   ++ ++++....    ..|.+||    +.+ +++...+    .+|...+.     .++
T Consensus       246 -~~~~~~~~~~~~~~-~SpD---~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (719)
T 1z68_A          246 -AMIASSDYYFSWLT-WVTD---ER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPV  318 (719)
T ss_dssp             -HHHHTSCEEEEEEE-ESSS---SE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred             -ccCCCCcceEEEeE-EeCC---Ce-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccE
Confidence             00001244677887 9994   55 66664322    3488899    776 5555555    46777777     899


Q ss_pred             eecCCCce
Q 024245          260 MWRNPITM  267 (270)
Q Consensus       260 ~s~~g~~l  267 (270)
                      |+|||+.|
T Consensus       319 ~spdg~~l  326 (719)
T 1z68_A          319 FSYDAISY  326 (719)
T ss_dssp             ECTTSSCE
T ss_pred             ECCCCCeE
Confidence            99999853

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=3.3e-17  Score=127.81  Aligned_cols=214  Identities=10%  Similarity=0.044  Sum_probs=136.0

Q ss_pred             Cccccccccc-ccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCC----CcceEEEEEeeCCCCCEEEEE
Q 024245            9 DPVAVLRGHR-ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus         9 ~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      +.+..+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+.....    ...+..++|+|  +|++|+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~  109 (349)
T 1jmx_B           32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT  109 (349)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred             cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEE
Confidence            3444454332 257889999999855 5566789999999999988877764321    13378899999  99999988


Q ss_pred             eCC------------CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC
Q 024245           83 GRD------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (270)
Q Consensus        83 ~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (270)
                      +.+            +.|.+||+.+++... .+....... ....+.+.....  ....+.....|+..+++.......+
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~--l~~~~~~i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPMPR-QVYLMRAADDGS--LYVAGPDIYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEECCS-SCCCEEECTTSC--EEEESSSEEEECTTTCCEEEEECST
T ss_pred             cccccccccccccCCCeEEEEECCCccccc-eeeeccCCC-cccceeECCCCc--EEEccCcEEEEeCCCCceecccccc
Confidence            865            899999998865332 111111111 111112222111  2222333555665554433221111


Q ss_pred             C---------------------------------------------------------------------CC--eEecC-
Q 024245          151 D---------------------------------------------------------------------SK--DDVPA-  158 (270)
Q Consensus       151 ~---------------------------------------------------------------------~~--~~~s~-  158 (270)
                      .                                                                     ..  ++|+| 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  265 (349)
T 1jmx_B          186 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK  265 (349)
T ss_dssp             TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS
T ss_pred             ccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC
Confidence            0                                                                     01  56779 


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      +++.++++    ++.|.+||+.+++.+..+..       ++      .+..++ |+|+   |+ +|++++.++.|++||+
T Consensus       266 dg~~l~~~----~~~v~~~d~~~~~~~~~~~~-------~~------~~~~~~-~s~d---g~-~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          266 DPNQIYGV----LNRLAKYDLKQRKLIKAANL-------DH------TYYCVA-FDKK---GD-KLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             CTTEEEEE----ESEEEEEETTTTEEEEEEEC-------SS------CCCEEE-ECSS---SS-CEEEESBSSEEEEEET
T ss_pred             CCCEEEEE----cCeEEEEECccCeEEEEEcC-------CC------CccceE-ECCC---CC-EEEEecCCCeEEEEec
Confidence            99876653    68999999999988877762       11      345666 9985   44 5666788899999999


Q ss_pred             CCCCcceeeeecc
Q 024245          239 RNPGIPLTAMKVH  251 (270)
Q Consensus       239 ~~~~~~~~~~~~~  251 (270)
                      .+ ++.+..++..
T Consensus       324 ~~-~~~~~~~~~~  335 (349)
T 1jmx_B          324 DT-LEKVKNIKLP  335 (349)
T ss_dssp             TT-TEEEEEEECS
T ss_pred             cc-cceeeeeecC
Confidence            98 7777777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=4.6e-17  Score=126.97  Aligned_cols=224  Identities=9%  Similarity=0.060  Sum_probs=138.8

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCC
Q 024245           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      ++++++++.++++++.++.|++||+.+++.+..+..+.. ..+..++|+|  ++++++ +...++.|.+||+.+++... 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~-   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF-   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence            456788888999999999999999999998888775431 2478999999  888654 55678999999999876533 


Q ss_pred             Cccceeccc--------ceEEEEeeccCCccceecC-----------CCCceEEEeccCceeee--ccCCCCC---eEec
Q 024245          102 PSLTIKTNS--------YHFCKLSLVKEPYANAKQA-----------NEPKDCYEREVGETVDT--DSLCDSK---DDVP  157 (270)
Q Consensus       102 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~---~~~s  157 (270)
                         .+....        .....++............           .....+|++.+++....  ....+..   ++|+
T Consensus        80 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  156 (349)
T 1jmx_B           80 ---HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  156 (349)
T ss_dssp             ---EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             ---EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence               222111        1111222222111111111           25566788876442221  1112222   7899


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCc-----------ccC------------------------
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-----------SSK------------------------  202 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h-----------~~~------------------------  202 (270)
                      |+|+ +++ .+   +.|.+||+.+++.+..+....... ..+           ...                        
T Consensus       157 ~dg~-l~~-~~---~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          157 DDGS-LYV-AG---PDIYKMDVKTGKYTVALPLRNWNR-KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             TTSC-EEE-ES---SSEEEECTTTCCEEEEECSTTCCC-TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             CCCc-EEE-cc---CcEEEEeCCCCceeccccccccCC-ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            9998 654 33   349999999998877765311000 000           000                        


Q ss_pred             ----------------------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe
Q 024245          203 ----------------------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM  260 (270)
Q Consensus       203 ----------------------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  260 (270)
                                            .......++ |+|.  +|+ +++++  ++.|.+||+.+ ++.+..+.. ...+.+++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~--dg~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~  302 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGL-RSPK--DPN-QIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAF  302 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEE-ECSS--CTT-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEE
T ss_pred             cceeEEEEeccCCcEEecccccCCCcceeeE-ecCC--CCC-EEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEE
Confidence                                  000123344 6661  344 66666  88999999998 777777764 346789999


Q ss_pred             ecCCCce
Q 024245          261 WRNPITM  267 (270)
Q Consensus       261 s~~g~~l  267 (270)
                      +|||++|
T Consensus       303 s~dg~~l  309 (349)
T 1jmx_B          303 DKKGDKL  309 (349)
T ss_dssp             CSSSSCE
T ss_pred             CCCCCEE
Confidence            9998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.7e-16  Score=124.62  Aligned_cols=231  Identities=10%  Similarity=0.040  Sum_probs=146.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeecCC----CcceEEEEEeeCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSI   74 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~   74 (270)
                      +.+.++..+..+  .++|+|+|++++++.          .++.|.+||..+.+.+..+.....    ......++++|  
T Consensus        42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--  117 (361)
T 2oiz_A           42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--  117 (361)
T ss_dssp             CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--
T ss_pred             eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--
Confidence            344455555444  899999999998876          367899999999988888764310    02367899999  


Q ss_pred             CCCEEEEEeC--CCcEEEEEccCCccCCCCccceec---------ccceEE---------EEeeccCCcc----------
Q 024245           75 GLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKT---------NSYHFC---------KLSLVKEPYA----------  124 (270)
Q Consensus        75 ~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~---------~~~~~~---------~~~~~~~~~~----------  124 (270)
                      +|++|+++..  +++|.+||+.+++..... .....         ......         .+........          
T Consensus       118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~  196 (361)
T 2oiz_A          118 DGKFIVLQNASPATSIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF  196 (361)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEE-GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred             CCCEEEEECCCCCCeEEEEECCCCcEEEEE-ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence            9999998864  579999999988654310 00000         000000         0111000000          


Q ss_pred             ------------------ceecCCCCceEEEeccCcee-eec--------------cCCCCCeEecCCCCeEEEEec--C
Q 024245          125 ------------------NAKQANEPKDCYEREVGETV-DTD--------------SLCDSKDDVPAEGPKYMAVAG--E  169 (270)
Q Consensus       125 ------------------~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~s~~~~~~~~~~~--~  169 (270)
                                        ......+....+++...... ...              ..+...++|+|++++++++..  .
T Consensus       197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~  276 (361)
T 2oiz_A          197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG  276 (361)
T ss_dssp             CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred             cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence                              00000111222333222110 000              011122789999988887532  0


Q ss_pred             -------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          170 -------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       170 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                             ..+.|.+||+.+++.+.++..        +     . ...++ |+|+   |+ +|++++. +.|.+||..+ +
T Consensus       277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~--------~-----~-p~~ia-~spd---g~-~l~v~n~-~~v~v~D~~t-~  335 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKTKQRVARIPG--------R-----D-ALSMT-IDQQ---RN-LMLTLDG-GNVNVYDISQ-P  335 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTTTEEEEEEEC--------T-----T-CCEEE-EETT---TT-EEEEECS-SCEEEEECSS-S
T ss_pred             CcccccCCCceEEEEECCCCcEEEEEec--------C-----C-eeEEE-ECCC---CC-EEEEeCC-CeEEEEECCC-C
Confidence                   135899999999999999882        3     2 67777 9994   66 7777776 9999999999 8


Q ss_pred             --cceeeeeccCCCeeEEEeecCCC
Q 024245          243 --IPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       243 --~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                        +.+..+..+......++++|||.
T Consensus       336 ~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cceeeEEeccCCCCcEEEEecCCCC
Confidence              88888766778889999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.2e-16  Score=126.58  Aligned_cols=236  Identities=10%  Similarity=0.024  Sum_probs=137.7

Q ss_pred             CCcccccccccccEEE-----EEEeCCCCEEEEecC-CC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE
Q 024245            8 PDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (270)
                      ...+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+.  ..+..+.|+|  +++.|
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~sp--dg~~l   95 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--DNTFGGFLSP--DDDAL   95 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--BCSSSCEECT--TSSEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--CCccceEEcC--CCCEE
Confidence            3456667777766666     889999999888877 66  48889999888877666554  3355778999  99999


Q ss_pred             EEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee-------------------------cCCCCce
Q 024245           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK-------------------------QANEPKD  134 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~  134 (270)
                      +.++.++.|.+||+.+++...  +...+........+..  .+....+                         .......
T Consensus        96 ~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~~~~--~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGTWVA--NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             EEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             EEEeCCCeEEEEECCCCccee--eeechhhcccccceeE--CCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            999999999999999886432  2222211111111111  1111111                         0112334


Q ss_pred             EEEeccCceeeeccCCC-CC-eEecC-CCCeEEEEecCC----CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCcee
Q 024245          135 CYEREVGETVDTDSLCD-SK-DDVPA-EGPKYMAVAGEQ----LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC  207 (270)
Q Consensus       135 ~~~~~~~~~~~~~~~~~-~~-~~~s~-~~~~~~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  207 (270)
                      .+++.+++......... .. +.|+| +|+.++.+....    ...|.++|...++. ..+.        .+.  ....+
T Consensus       172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~~~~  240 (388)
T 3pe7_A          172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVK--------THA--EGESC  240 (388)
T ss_dssp             EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESC--------CCC--TTEEE
T ss_pred             EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEee--------eCC--CCccc
Confidence            46666654332221111 11 89999 998776544321    34788888775443 3443        111  11245


Q ss_pred             eeeeecCCCCCCCceEEEEecCCC----cEEEEEcCCCCcc--eeeeeccCC---CeeEEEeecCCCce
Q 024245          208 MAVQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIP--LTAMKVHLE---PGLECSMWRNPITM  267 (270)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~--~~~~~~~~~---~v~~~~~s~~g~~l  267 (270)
                      ..+. |+|+   |+.++++...++    .|++||+.+ ++.  +..+.++..   ....++|+|||+.|
T Consensus       241 ~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l  304 (388)
T 3pe7_A          241 THEF-WVPD---GSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDA  304 (388)
T ss_dssp             EEEE-ECTT---SSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred             ccce-ECCC---CCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence            5666 9995   552333333222    399999998 543  223332110   12334799998865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=1.3e-15  Score=118.84  Aligned_cols=207  Identities=7%  Similarity=0.078  Sum_probs=121.7

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEec-CCCcEEEEeCCC-Cc--eeEEEeecCC-------CcceEEEEEeeCCCCCEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ-HR--TVSSSWVHSA-------AHGIVSVATGPSIGLNKV   79 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~-~~--~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l   79 (270)
                      +..+..+...+..++|+|+|++|++++ .++.|.+|++.. +.  .+..+.....       ...+.+++|+|  +|+++
T Consensus        78 ~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~  155 (347)
T 3hfq_A           78 LNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLA  155 (347)
T ss_dssp             EEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEE
T ss_pred             eeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEE
Confidence            344455777889999999999888877 679999999963 32  2333322110       12488999999  98866


Q ss_pred             EEEeCCCcEEEEEcc-CCccCCCCccceeccc-ceEEEEeeccCCcccee--cCCCCceEEEecc--Ccee--ee--ccC
Q 024245           80 ISQGRDGTVKCWDIE-NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAK--QANEPKDCYEREV--GETV--DT--DSL  149 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~--~~--~~~  149 (270)
                      ++...++.|.+||+. +++...  ...+.... .....+.+.......+.  .......+|++..  ++..  ..  ...
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  233 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSE--QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP  233 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEE--EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred             EEeCCCCEEEEEEECCCCcEEE--eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence            677778899999998 443221  11111111 11112222222221222  2334456677664  3211  11  111


Q ss_pred             CC----CC---eEecCCCCeEEEEecCCCceEEEEeCCCc---ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCC
Q 024245          150 CD----SK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (270)
Q Consensus       150 ~~----~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (270)
                      ..    ..   ++|+|+|++++++ ...++.|.+||+...   +.+..+.        .+    ...+..++ |+|+   
T Consensus       234 ~~~~~~~~~~~i~~spdG~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~--------~~----~~~~~~~~-~spd---  296 (347)
T 3hfq_A          234 ADYTAHNGAAAIRLSHDGHFLYVS-NRGYNTLAVFAVTADGHLTLIQQIS--------TE----GDFPRDFD-LDPT---  296 (347)
T ss_dssp             TTCCSCCEEEEEEECTTSCEEEEE-EETTTEEEEEEECGGGCEEEEEEEE--------CS----SSCCCEEE-ECTT---
T ss_pred             CCCCCCCcceeEEECCCCCEEEEE-eCCCCEEEEEEECCCCcEEEeEEEe--------cC----CCCcCeEE-ECCC---
Confidence            11    11   8999999987664 445799999999733   3344443        22    22355676 9994   


Q ss_pred             CceEEEEec-CCCcEEEEEcC
Q 024245          220 GFVNVLAGY-EDGSILVWDIR  239 (270)
Q Consensus       220 g~~~l~~~~-~dg~i~vwd~~  239 (270)
                      |+ +|++++ .++.|.+|++.
T Consensus       297 g~-~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          297 EA-FVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             SS-EEEEEETTTTEEEEEEEC
T ss_pred             CC-EEEEEEcCCCcEEEEEEe
Confidence            55 565555 55899999554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=3.3e-16  Score=134.17  Aligned_cols=229  Identities=8%  Similarity=-0.059  Sum_probs=139.4

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC-c--ceEEEEEeeCCCCCEEEEEeCC---------
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGRD---------   85 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~d---------   85 (270)
                      ......++|+|+|++++++  |+.|++||+.++++...+..+... .  ....++|+|  ||++|+.++.+         
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence            3446689999999999886  899999999999988777766531 1  124488999  99999988876         


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCC-------------
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-------------  152 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  152 (270)
                      +.+.+||+.+++...  +.. .........+++++...  .......+.+++...++..+....++.             
T Consensus        92 ~~~~~~d~~~~~~~~--l~~-~~~~~~~~~~SPdG~~l--a~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT--EER-IPNNTQWVTWSPVGHKL--AYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC--SSC-CCTTEEEEEECSSTTCE--EEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE--ccc-CCCcceeeEECCCCCEE--EEEECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            566799999987543  211 11122222233332222  222334455566666554443333321             


Q ss_pred             --------CeEecCCCCeEEEEecC----------------------------------CCceEEEEeCCC---cc--ee
Q 024245          153 --------KDDVPAEGPKYMAVAGE----------------------------------QLSEVEIWDLNT---AE--RC  185 (270)
Q Consensus       153 --------~~~~s~~~~~~~~~~~~----------------------------------~d~~i~iwd~~~---~~--~~  185 (270)
                              .+.|||||+.++.++..                                  ....|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                    17799999987654311                                  012578888887   63  22


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe----cCCCcEEEEEcCCCCc----c--eeee--eccCC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGI----P--LTAM--KVHLE  253 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~----~~dg~i~vwd~~~~~~----~--~~~~--~~~~~  253 (270)
                      ..+..+      .........+..+. |+|   ||+ .++..    +.+..|++||+.+ ++    +  +..+  ..|..
T Consensus       247 ~~l~~~------~~~~~~~~~~~~~~-wsp---dg~-~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~  314 (740)
T 4a5s_A          247 IQITAP------ASMLIGDHYLCDVT-WAT---QER-ISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTG  314 (740)
T ss_dssp             EEECCC------HHHHTSCEEEEEEE-EEE---TTE-EEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSS
T ss_pred             EEecCC------ccCCCCCeEEEEEE-EeC---CCe-EEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCc
Confidence            233210      00001244677887 999   465 44443    2334799999998 54    1  2222  45666


Q ss_pred             Cee-----EEEeecCCCce
Q 024245          254 PGL-----ECSMWRNPITM  267 (270)
Q Consensus       254 ~v~-----~~~~s~~g~~l  267 (270)
                      .|.     ..+|+|||+.|
T Consensus       315 ~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          315 WVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             CSSSSSCCCCEECTTSSEE
T ss_pred             eEccCcCCCceEcCCCCEE
Confidence            655     78999999853

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=2.7e-16  Score=139.41  Aligned_cols=218  Identities=11%  Similarity=0.061  Sum_probs=147.4

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCC-CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..+.   .+..++|+|  +|+.|+.+ .++.|.+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~-~~~~i~~  269 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFS-KGGSIYI  269 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEE-ETTEEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEE-eCCEEEE
Confidence            445789999999999998 6777888899999998753 34444555443   366789999  99988887 4889999


Q ss_pred             EEccCCccCCCCccceecc-------------cceEEEEe-eccCCccceecCCCCceEEEeccCceeeeccCCCCC---
Q 024245           91 WDIENGGLSSNPSLTIKTN-------------SYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---  153 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  153 (270)
                      ||+......     .+...             ......++ ..+...  ..........|+...+....  +..+..   
T Consensus       270 ~d~~~~~l~-----~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l--a~~~~~~i~~~~~~~~~~~~--~~~~~~~~~  340 (1045)
T 1k32_A          270 FNPDTEKIE-----KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI--AFVSRGQAFIQDVSGTYVLK--VPEPLRIRY  340 (1045)
T ss_dssp             ECTTTCCEE-----ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE--EEEETTEEEEECTTSSBEEE--CSCCSCEEE
T ss_pred             ecCCceEee-----eeccCcccccccccccccccceeeecCCCCCEE--EEEEcCEEEEEcCCCCceEE--ccCCCcceE
Confidence            998443221     11111             12222333 322222  12223334455555554332  222322   


Q ss_pred             --eEecCCCCeEEEEecCCCceEE-EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 --DDVPAEGPKYMAVAGEQLSEVE-IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 --~~~s~~~~~~~~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                        ++|+ +|+.++.+ +. ++.+. +||+..++.. .+.        +|    ...+..++ |+|+   |+ +|++++.+
T Consensus       341 ~~~~~s-dg~~l~~~-s~-~~~l~~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~la~~~~~  399 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHG-TR-EGDFLGIYDYRTGKAE-KFE--------EN----LGNVFAMG-VDRN---GK-FAVVANDR  399 (1045)
T ss_dssp             EEECSS-SEEEEEEE-ET-TEEEEEEEETTTCCEE-ECC--------CC----CCSEEEEE-ECTT---SS-EEEEEETT
T ss_pred             EeeeEc-CCCeEEEE-EC-CCceEEEEECCCCCce-Eec--------CC----ccceeeeE-ECCC---CC-EEEEECCC
Confidence              7899 88776653 33 67888 9999876543 333        23    23567777 9995   55 89999999


Q ss_pred             CcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          231 GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +.|++||+.+ ++....+.+|...+.+++|||||++|
T Consensus       400 ~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          400 FEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFI  435 (1045)
T ss_dssp             SEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             CeEEEEECCC-CceEEeccCCCCCccceEECCCCCeE
Confidence            9999999998 77777777899999999999999976

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=8.9e-16  Score=120.77  Aligned_cols=237  Identities=9%  Similarity=0.011  Sum_probs=132.4

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCC-CCceeEEEeecCCCcceEEEEEeeCCCCCE--EEEEe------------
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQG------------   83 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~------------   83 (270)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++.......... +.+..++|+|  +|++  +++++            
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT--NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC--CCCEEEEEEecCCcceeccceee
Confidence            467889999999999998888 89999997 7766544332111 2255689999  9884  44553            


Q ss_pred             -CCCcEEEEEccC-CccCCCCcccee-cccceEEEEeeccCCccceec--CCCCceEEEec-cCceee-eccC----CCC
Q 024245           84 -RDGTVKCWDIEN-GGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQ--ANEPKDCYERE-VGETVD-TDSL----CDS  152 (270)
Q Consensus        84 -~d~~i~~wd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~----~~~  152 (270)
                       .++.+.+|++.. ++... .+.... ........+.+..........  ....+.+|++. +++... ....    +..
T Consensus       116 ~~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence             689999999974 44321 011110 011122222222222212222  23456668887 554321 1121    111


Q ss_pred             C--eEecCCCCeEEEEecCCCceEEEEeCC--Ccceee---eeccCcCCCCCCcccC--CCceeeeeee-cCCCCCCCce
Q 024245          153 K--DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAERCT---RLHQNSCGGSPNFSSK--GRGMCMAVQA-YLPSKSQGFV  222 (270)
Q Consensus       153 ~--~~~s~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~---~~~~~~~~~~~~h~~~--~~~~~~~~~~-~~p~~~~g~~  222 (270)
                      .  ++|+|+|+++++ ++..++.|.+|++.  +++...   .+..-. ....+|...  ....+..+ + |+|   ||+ 
T Consensus       195 p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i-~~~sp---dG~-  267 (365)
T 1jof_A          195 PRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADV-CALTF---SGK-  267 (365)
T ss_dssp             EEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEE-EEECT---TSS-
T ss_pred             CCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccE-EEECC---CCC-
Confidence            2  899999987765 45457899999765  455421   222100 000011000  00023333 5 888   466 


Q ss_pred             EEEEecC-CC-----cEEEEEcCCCCccee---eeeccCCCeeEEEeec---CCCce
Q 024245          223 NVLAGYE-DG-----SILVWDIRNPGIPLT---AMKVHLEPGLECSMWR---NPITM  267 (270)
Q Consensus       223 ~l~~~~~-dg-----~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~s~---~g~~l  267 (270)
                      +|++++. ++     .|.+|++...++...   ....+...+..++|+|   ||++|
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l  324 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence            5555543 22     899999973255433   2333555678899999   78875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=2.5e-14  Score=110.92  Aligned_cols=228  Identities=12%  Similarity=0.066  Sum_probs=143.9

Q ss_pred             cccEEEEEEeCCCCEEEEecCC------------------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC
Q 024245           18 RASVTDVCFHQTKPILFAGTTG------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (270)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+.... -.....++++| 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~p~gia~d~-  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-FYLPHGLSIDT-  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-CSSEEEEEECT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-cCCceEEEECC-
Confidence            4679999999999999888777                        479999998888876554221 14589999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCccCCCCcccee---------cccceEEEEeeccCCccceecC---CCCceEEEeccC
Q 024245           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK---------TNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVG  141 (270)
Q Consensus        74 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  141 (270)
                       +|+++++...++.|++||......   .+..+.         ........+.+.......+...   ...+..|+ ..+
T Consensus       101 -~g~l~v~d~~~~~v~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          101 -DGNYWVTDVALHQVFKLDPHSKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             -TSCEEEEETTTTEEEEECTTCSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             -CCCEEEEECCCCEEEEEeCCCCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence             989888888899999999865421   122221         1111223334433112222222   23334444 233


Q ss_pred             ceeeecc-CC--------C----CCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245          142 ETVDTDS-LC--------D----SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (270)
Q Consensus       142 ~~~~~~~-~~--------~----~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (270)
                      ..+.... .+        +    ..++++|++..+++ +...++.|++||..+++.+..+...      .+    ...+.
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~------~~----~~~~~  244 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHA------SF----GRNVF  244 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCT------TT----TTCEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEecc------cc----CCCcc
Confidence            3222111 11        1    11999999556666 4555789999999989988888621      11    23455


Q ss_pred             eeeecCCCC---CCCceEEEEecCCCcEEEEEcCCCCcceeeee---ccCCCeeEEEeecCCCc
Q 024245          209 AVQAYLPSK---SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPGLECSMWRNPIT  266 (270)
Q Consensus       209 ~~~~~~p~~---~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~  266 (270)
                      .++ |+|..   .+|. .+++...+..|++||..+ ++.+..+.   ++...+.+|+++|+|.+
T Consensus       245 ~~~-~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          245 AIS-YIPGFLFAVNGK-PYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             EEE-EETTEEEEEECC-CCTTCSCCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             eee-ecCCEEEEeCCC-EEeccCCCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            666 77710   0121 233334456899999998 78777773   56677999999999954

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=2e-14  Score=111.52  Aligned_cols=237  Identities=8%  Similarity=0.020  Sum_probs=141.1

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----C
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----G   86 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~   86 (270)
                      ...+.++...+.+++|+++|++++++..++.|.+||..+++.......+.  ..+.+++++|  +++++++...+    +
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~--dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSCC
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECC--CCcEEEEeCCCCCCCc
Confidence            34455666778999999999988888889999999998877665443344  5599999999  88887777666    6


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEecc--Cceeee--ccCCCCCeEec
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREV--GETVDT--DSLCDSKDDVP  157 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~--~~~~~~~~~~s  157 (270)
                      .|.+||..++....  .............+.+............     ....+|.+..  ++....  .......++|+
T Consensus       113 ~i~~~d~~~~~~~~--~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  190 (333)
T 2dg1_A          113 GIFAATENGDNLQD--IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  190 (333)
T ss_dssp             EEEEECTTSCSCEE--EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             eEEEEeCCCCEEEE--EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEEC
Confidence            89999998775421  1110011112222333322221111111     1234444432  222111  11111128999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vw  236 (270)
                      |+++.++++ ...++.|.+||+.+ +..+..+....     ............++ +++   +|+ ++++...++.|.+|
T Consensus       191 ~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~-~d~---~G~-l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          191 TDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDS---DDN-LYVAMYGQGRVLVF  259 (333)
T ss_dssp             TTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBT---TCC-EEEEEETTTEEEEE
T ss_pred             CCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceE-----EEecCCCCCCCceE-ECC---CCC-EEEEEcCCCEEEEE
Confidence            999877664 34468999999964 33332221000     00000012445566 887   455 66676778899999


Q ss_pred             EcCCCCcceeeeeccCC------CeeEEEeecCCCc
Q 024245          237 DIRNPGIPLTAMKVHLE------PGLECSMWRNPIT  266 (270)
Q Consensus       237 d~~~~~~~~~~~~~~~~------~v~~~~~s~~g~~  266 (270)
                      |..  ++.+..+..+..      .+.+++|+||+..
T Consensus       260 d~~--g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~  293 (333)
T 2dg1_A          260 NKR--GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  293 (333)
T ss_dssp             CTT--SCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             CCC--CCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence            984  566666654432      6899999999754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=3.2e-14  Score=108.59  Aligned_cols=225  Identities=9%  Similarity=-0.020  Sum_probs=140.9

Q ss_pred             cccccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .+..+..+.....+++|+|+|+ +++++..++.|..||..++  ...+..+.  ..+.+++++|  +|+++++...++.|
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~--dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNK--QGHLIACSHGLRRL   92 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECT--TCCEEEEETTTTEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECC--CCcEEEEecCCCeE
Confidence            3455556677889999999998 7888888999999999877  55665555  5589999999  98888877777899


Q ss_pred             EEEEccCCccCCCCccceecccc--eEEEEeeccCCccceec----------------CCCCceEEEeccCceeeeccCC
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQ----------------ANEPKDCYEREVGETVDTDSLC  150 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  150 (270)
                      .+||..+++...  +........  ....+.+..........                ......+|.+.....+......
T Consensus        93 ~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  170 (296)
T 3e5z_A           93 ERQREPGGEWES--IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD  170 (296)
T ss_dssp             EEECSTTCCEEE--EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC
T ss_pred             EEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC
Confidence            999998776422  111100000  01112222211111110                0012355555443222222221


Q ss_pred             CCC---eEecCCCCeEEEEecCCCceEEEEeCC-Ccce---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          151 DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       151 ~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      ...   ++|+|+++.+ + +...++.|.+||+. +++.   ...+.        .+    ...+..++ +.+   +|+ +
T Consensus       171 ~~~~~gi~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~--------~~----~~~p~~i~-~d~---~G~-l  231 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFT--------VE----PGKTDGLR-VDA---GGL-I  231 (296)
T ss_dssp             CSSEEEEEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEEC--------CS----SSCCCSEE-EBT---TSC-E
T ss_pred             CCCCccEEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEee--------CC----CCCCCeEE-ECC---CCC-E
Confidence            111   9999999876 4 45567899999987 4544   22331        11    22344565 887   465 4


Q ss_pred             EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEe-ecCCCc
Q 024245          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSM-WRNPIT  266 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~  266 (270)
                      +++.  ++.|.+||..  ++.+..+..+.. +++++| +|++..
T Consensus       232 ~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~  270 (296)
T 3e5z_A          232 WASA--GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRT  270 (296)
T ss_dssp             EEEE--TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCE
T ss_pred             EEEc--CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCE
Confidence            4444  7899999986  677777877766 999999 478764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.68  E-value=2.2e-14  Score=112.56  Aligned_cols=184  Identities=11%  Similarity=0.108  Sum_probs=113.9

Q ss_pred             cccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCce------e------EEEeecCCCcceEEEEEeeCCCCCEEEEEe-
Q 024245           18 RASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRT------V------SSSWVHSAAHGIVSVATGPSIGLNKVISQG-   83 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~------~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-   83 (270)
                      ...+.+++|+|+|++|++ ...++.|.+|++.....      +      ........ ..+..++|+|  +|+++++++ 
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~v~~~  230 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-SGPRHLIFNS--DGKFAYLINE  230 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-CCEEEEEECT--TSSEEEEEET
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC-CCCeEEEEcC--CCCEEEEEcC
Confidence            345789999999996655 44588999999875431      1      12222221 4578999999  999887666 


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .++.|.+||+.+++...  +..+.......                                   .+...++|+|+|+++
T Consensus       231 ~~~~v~v~~~~~g~~~~--~~~~~~~~~~~-----------------------------------~~~~~i~~spdg~~l  273 (361)
T 3scy_A          231 IGGTVIAFRYADGMLDE--IQTVAADTVNA-----------------------------------QGSGDIHLSPDGKYL  273 (361)
T ss_dssp             TTCEEEEEEEETTEEEE--EEEEESCSSCC-----------------------------------CCEEEEEECTTSSEE
T ss_pred             CCCeEEEEEecCCceEE--eEEEecCCCCC-----------------------------------CCcccEEECCCCCEE
Confidence            68999999998664311  11111000000                                   000016799999987


Q ss_pred             EEEecCC-CceEEEEeCC--Ccc--eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEE
Q 024245          164 MAVAGEQ-LSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWD  237 (270)
Q Consensus       164 ~~~~~~~-d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd  237 (270)
                      ++ +... ++.|.+|++.  +++  .+..+.        .     ...+..++ |+|+   |+ +|++++ .++.|.+|+
T Consensus       274 ~v-~~~~~~~~i~v~~~~~~~g~~~~~~~~~--------~-----g~~~~~~~-~spd---g~-~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          274 YA-SNRLKADGVAIFKVDETNGTLTKVGYQL--------T-----GIHPRNFI-ITPN---GK-YLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EE-EECSSSCEEEEEEECTTTCCEEEEEEEE--------C-----SSCCCEEE-ECTT---SC-EEEEEETTTTEEEEEE
T ss_pred             EE-ECCCCCCEEEEEEEcCCCCcEEEeeEec--------C-----CCCCceEE-ECCC---CC-EEEEEECCCCCEEEEE
Confidence            65 4444 6899999986  344  333333        1     12355676 9994   65 555555 778999976


Q ss_pred             cC--CCCcceeee-eccCCCeeEEEee
Q 024245          238 IR--NPGIPLTAM-KVHLEPGLECSMW  261 (270)
Q Consensus       238 ~~--~~~~~~~~~-~~~~~~v~~~~~s  261 (270)
                      +.  + ++..... ..+...+.+++|.
T Consensus       335 ~d~~~-g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          335 RDQAT-GLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ECTTT-CCEEECSCCEECSSEEEEEEE
T ss_pred             EECCC-CcEeecceeeeCCCCeEEEEc
Confidence            54  4 4433332 2244678999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=2.9e-14  Score=121.68  Aligned_cols=231  Identities=10%  Similarity=0.017  Sum_probs=141.9

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCC-----cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~---   87 (270)
                      +|...+..++|||||++||.++.++     .|++||+.+++.+.....+   ..+..++|+|  ||+.|+.++.++.   
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wsp--Dg~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNAYPQQDGK  196 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEECCCCSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEe--CCCEEEEEEECCcccc
Confidence            4555789999999999988765433     8999999999877643322   2267899999  9999998887766   


Q ss_pred             -------------EEEEEccCCccCCCCccceecccceEE--EEeeccCCccceecC----CCCceEEEecc------Cc
Q 024245           88 -------------VKCWDIENGGLSSNPSLTIKTNSYHFC--KLSLVKEPYANAKQA----NEPKDCYEREV------GE  142 (270)
Q Consensus        88 -------------i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~  142 (270)
                                   |.+|++.++......+.....+.....  .++.++.........    .....++++..      +.
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence                         999999887532111112211222122  222222211111111    22344566665      32


Q ss_pred             eeeeccCCCCC---eEecCCCCeEEEEecC--CCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          143 TVDTDSLCDSK---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       143 ~~~~~~~~~~~---~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                      .....+..+..   ..|+++|+.+++.+..  .++.|.+||+.++..  ...+.        .|..  ...+..+. |.+
T Consensus       277 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~--~~~~~~~~-~~~  345 (710)
T 2xdw_A          277 LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--------PEHE--KDVLEWVA-CVR  345 (710)
T ss_dssp             CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS--SCEEEEEE-EET
T ss_pred             cceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--------CCCC--CCeEEEEE-EEc
Confidence            11222222222   5688999988775542  134799999987642  34444        2211  12455566 775


Q ss_pred             CCCCCceEEEEecCCCc--EEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          216 SKSQGFVNVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       216 ~~~~g~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                         ++. ++++...|+.  |++||+.+ ++.+..+..+...+..++++|++..|
T Consensus       346 ---~~~-lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          346 ---SNF-LVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             ---TTE-EEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             ---CCE-EEEEEEECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEE
Confidence               344 8888888885  56667756 66677787777788899999988643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=1e-14  Score=115.54  Aligned_cols=234  Identities=11%  Similarity=-0.009  Sum_probs=133.6

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEE--eeCCCCCEEEEE-----
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQ-----   82 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~-----   82 (270)
                      ..+...++...+..+.|+|||+.|+.++.++.|++||+.+++....+..+.  ..+....|  +|  ++.+++..     
T Consensus        72 ~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~--dg~~l~~~~~~~~  147 (388)
T 3pe7_A           72 ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANS--DCTKLVGIEIRRE  147 (388)
T ss_dssp             EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECT--TSSEEEEEEEEGG
T ss_pred             eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh--hcccccceeECC--CCCeeccccccCc
Confidence            334445565555677899999999999999999999999998777666555  33444444  67  88887742     


Q ss_pred             -----------------eCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCC---CCceEEEe--c
Q 024245           83 -----------------GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN---EPKDCYER--E  139 (270)
Q Consensus        83 -----------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~--~  139 (270)
                                       ..+..|.+||+.+++...  +. ..........++. ............   ....+|.+  .
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--IL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             ccccccccchhhhhhccCCcceEEEEECCCCceEE--ee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence                             234679999999876422  11 1111112222222 221111111111   12244443  3


Q ss_pred             cCceeeeccCCCC--C---eEecCCCCeEEEEecCCC---ceEEEEeCCCcceee--eeccCcCCCCCCcccCCCceeee
Q 024245          140 VGETVDTDSLCDS--K---DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMA  209 (270)
Q Consensus       140 ~~~~~~~~~~~~~--~---~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~--~~~~~~~~~~~~h~~~~~~~~~~  209 (270)
                      ... .........  .   .+|+|||+.++.++...+   ..|++||+.+++...  .+.        ++.. .......
T Consensus       225 ~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------~~~~-~~~~~~~  294 (388)
T 3pe7_A          225 GTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP--------ACSH-LMSNYDG  294 (388)
T ss_dssp             SCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC--------CEEE-EEECTTS
T ss_pred             CCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC--------Ccee-eeecCCC
Confidence            332 222222221  1   689999998765443222   249999999887433  222        2100 0000112


Q ss_pred             eeecCCCCCCCceEEEEe---------cCCCcEEEEEcCCCCcceeeeeccCC-----------CeeEEEeecCCCce
Q 024245          210 VQAYLPSKSQGFVNVLAG---------YEDGSILVWDIRNPGIPLTAMKVHLE-----------PGLECSMWRNPITM  267 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l  267 (270)
                      .. |+|+   |+ .|+..         ..+..|++||+.+ ++. ..+..+..           .+.+++|+|||+.|
T Consensus       295 ~~-~spd---g~-~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l  365 (388)
T 3pe7_A          295 SL-MVGD---GS-DAPVDVQDDSGYKIENDPFLYVFNMKN-GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI  365 (388)
T ss_dssp             SE-EEEE---EC-CC------------CCCCEEEEEETTT-TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             Ce-EccC---CC-cceeEeeeccccccCCCCEEEEEeccC-Cce-EEeccccCcccccccccccCCCCccCCCCCCEE
Confidence            24 8884   54 44432         4567899999987 543 45555555           57889999999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.4e-15  Score=119.27  Aligned_cols=232  Identities=9%  Similarity=-0.033  Sum_probs=130.1

Q ss_pred             Cccccccccccc-----EEEEEEeCCCCEEEEecCC---CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE
Q 024245            9 DPVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus         9 ~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (270)
                      +.+..+..+...     +..++|+|+|++|+.....   ..|.+||+.+++.........  .....+.|+|  +|+.|+
T Consensus        21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp--dg~~l~   96 (396)
T 3c5m_A           21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST--DERAFF   96 (396)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT--TSSEEE
T ss_pred             cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC--CCCEEE
Confidence            344555544333     7788999999988766443   478889998877654433332  2233478999  999999


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceE-EEEe--------------eccCCcccee--------cCCCCceEEE
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF-CKLS--------------LVKEPYANAK--------QANEPKDCYE  137 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~--------~~~~~~~~~~  137 (270)
                      .++.++.|.+||+.+++...  +...+...... ..+.              ....+....+        ........++
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEEcCCcEEEEECCCCCcEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence            99999999999998876422  22111110000 0000              1112221111        1122334466


Q ss_pred             eccCceeeeccCCCCC---eEecC-CCCeEEEEecCCC----ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245          138 REVGETVDTDSLCDSK---DDVPA-EGPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (270)
Q Consensus       138 ~~~~~~~~~~~~~~~~---~~~s~-~~~~~~~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (270)
                      +..++..... .....   +.|+| ++..+++++....    ..|.+||+..++. ..+.        .+.  ....+..
T Consensus       175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~~~~~~  242 (396)
T 3c5m_A          175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK--------EHA--EGESCTH  242 (396)
T ss_dssp             TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS--------CCC--TTEEEEE
T ss_pred             CCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee--------ccC--CCccccc
Confidence            6665543322 11111   78999 7876665443222    4688999875543 3333        110  1224556


Q ss_pred             eeecCCCCCCCceEEEEecCC-----CcEEEEEcCCCCcceeeeeccCCCeeEEEeec-CCCce
Q 024245          210 VQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPGIPLTAMKVHLEPGLECSMWR-NPITM  267 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l  267 (270)
                      +. |+|+   |+ +|+.++.+     +.|++||+.+ ++....... . ... +.|+| ||++|
T Consensus       243 ~~-~spd---g~-~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~-~-~~~-~~~s~~dg~~l  297 (396)
T 3c5m_A          243 EF-WIPD---GS-AMAYVSYFKGQTDRVIYKANPET-LENEEVMVM-P-PCS-HLMSNFDGSLM  297 (396)
T ss_dssp             EE-ECTT---SS-CEEEEEEETTTCCEEEEEECTTT-CCEEEEEEC-C-SEE-EEEECSSSSEE
T ss_pred             eE-ECCC---CC-EEEEEecCCCCccceEEEEECCC-CCeEEeeeC-C-CCC-CCccCCCCceE
Confidence            66 9995   55 55554333     4499999987 543332221 1 233 89999 99875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=3e-14  Score=118.86  Aligned_cols=173  Identities=12%  Similarity=0.056  Sum_probs=116.8

Q ss_pred             EEEEEEeCCCC--EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEEEcc
Q 024245           21 VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIE   94 (270)
Q Consensus        21 v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~   94 (270)
                      +...+|+|+|+  .+++++.+ .+.+||+.+++.......+   .  .+++|+|  +|++|++++.+    +.|.+||+.
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~---~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~  183 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP---G--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLS  183 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES---S--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETT
T ss_pred             ceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC---C--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCC
Confidence            34568888775  45555555 4669999988766554433   2  7899999  99999988777    789999998


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc--
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--  172 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~--  172 (270)
                      +++..     .+..+.....  .                                    .+|||||+.++  ++..++  
T Consensus       184 ~g~~~-----~l~~~~~~~~--~------------------------------------~~~SpDG~~l~--~~~~~~~~  218 (582)
T 3o4h_A          184 SGGLR-----VFDSGEGSFS--S------------------------------------ASISPGMKVTA--GLETAREA  218 (582)
T ss_dssp             TCCCE-----EECCSSCEEE--E------------------------------------EEECTTSCEEE--EEECSSCE
T ss_pred             CCCce-----EeecCCCccc--c------------------------------------ceECCCCCEEE--EccCCCee
Confidence            87642     2222211111  1                                    46999998766  444577  


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCce----eeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM----CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~----~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      .|++||+.+++.. .+.        +|.......    ..... |+|+   |. ++++++.||.+++|++   ++...  
T Consensus       219 ~i~~~d~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~-~spd---g~-~~~~~~~~g~~~l~~~---g~~~~--  279 (582)
T 3o4h_A          219 RLVTVDPRDGSVE-DLE--------LPSKDFSSYRPTAITWLG-YLPD---GR-LAVVARREGRSAVFID---GERVE--  279 (582)
T ss_dssp             EEEEECTTTCCEE-ECC--------CSCSHHHHHCCSEEEEEE-ECTT---SC-EEEEEEETTEEEEEET---TEEEC--
T ss_pred             EEEEEcCCCCcEE-Ecc--------CCCcChhhhhhcccccee-EcCC---Cc-EEEEEEcCCcEEEEEE---CCeec--
Confidence            8999999988876 555        443211111    11122 8984   54 9999999999999999   34333  


Q ss_pred             eccCCCeeEEEeecCCCce
Q 024245          249 KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~~l  267 (270)
                       ...+.|.+++|+ ||+++
T Consensus       280 -~~~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          280 -APQGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             -CCSSEEEEEEEE-TTEEE
T ss_pred             -cCCCceEEEEec-CCEEE
Confidence             234678899999 88765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.60  E-value=1.6e-14  Score=123.44  Aligned_cols=83  Identities=8%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             cccccccccc---cEEEEEEeCCCCEEEEecC---------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC
Q 024245           10 PVAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN   77 (270)
Q Consensus        10 ~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (270)
                      +...+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++.+..... .  ..+..++|+|  +|+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~--~~~~~~~~SP--DG~  122 (719)
T 1z68_A           48 SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-P--RPIQYLCWSP--VGS  122 (719)
T ss_dssp             EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C--SSBCCEEECS--STT
T ss_pred             EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-C--cccccceECC--CCC
Confidence            3344444443   3899999999999998876         78999999998876311111 1  3488999999  999


Q ss_pred             EEEEEeCCCcEEEEEccCCcc
Q 024245           78 KVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        78 ~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      .|+.+. ++.|++||+.+++.
T Consensus       123 ~la~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A          123 KLAYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             CEEEEE-TTEEEEESSTTSCC
T ss_pred             EEEEEE-CCeEEEEeCCCCCc
Confidence            999875 78999999988764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=3.7e-12  Score=96.60  Aligned_cols=222  Identities=9%  Similarity=0.088  Sum_probs=134.9

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC----CCcceEEEEEe-eCCCCCEEEEEeC-CCcEE
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATG-PSIGLNKVISQGR-DGTVK   89 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~l~s~~~-d~~i~   89 (270)
                      ++-..+.+++++++++++++...++.|.+||.. ++.+..+....    ....+..+++. +  +++++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEEE
Confidence            455679999999999988888889999999987 66665554211    11358899995 5  6566666543 88999


Q ss_pred             EEEccCCccCCCCccceecc-cceEEEEeeccCCccceecC--CCCceEEEeccCceeeecc-CCCCC----eEecCCCC
Q 024245           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGP  161 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~  161 (270)
                      +||. +++...    .+... ......+.+..... .....  ......|+.. ++.+.... ..+..    ++++++|.
T Consensus       104 ~~d~-~g~~~~----~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          104 IYNQ-YGQFVR----KFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EECT-TSCEEE----EECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EECC-CCcEEE----EecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence            9994 443322    12111 11222233333222 22222  2234445532 22222211 12211    89999986


Q ss_pred             eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCC-cEEEEEcCC
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRN  240 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg-~i~vwd~~~  240 (270)
                       +++ +...++.|++||.. ++.+..+..        +.  .......++ ++|   +|+ ++++...++ .|.+||.. 
T Consensus       177 -l~v-~~~~~~~i~~~~~~-g~~~~~~~~--------~g--~~~~p~~i~-~d~---~G~-l~v~~~~~~~~i~~~~~~-  237 (286)
T 1q7f_A          177 -IFI-SDNRAHCVKVFNYE-GQYLRQIGG--------EG--ITNYPIGVG-INS---NGE-ILIADNHNNFNLTIFTQD-  237 (286)
T ss_dssp             -EEE-EEGGGTEEEEEETT-CCEEEEESC--------TT--TSCSEEEEE-ECT---TCC-EEEEECSSSCEEEEECTT-
T ss_pred             -EEE-EECCCCEEEEEcCC-CCEEEEEcc--------CC--ccCCCcEEE-ECC---CCC-EEEEeCCCCEEEEEECCC-
Confidence             444 44457899999974 666666652        11  123456676 888   455 777777775 99999954 


Q ss_pred             CCcceeeeeccCC--CeeEEEeecCCCce
Q 024245          241 PGIPLTAMKVHLE--PGLECSMWRNPITM  267 (270)
Q Consensus       241 ~~~~~~~~~~~~~--~v~~~~~s~~g~~l  267 (270)
                       ++.+..+..+..  .+.+++++|+|.++
T Consensus       238 -g~~~~~~~~~~~~~~~~~i~~~~~g~l~  265 (286)
T 1q7f_A          238 -GQLISALESKVKHAQCFDVALMDDGSVV  265 (286)
T ss_dssp             -SCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             -CCEEEEEcccCCCCcceeEEECCCCcEE
Confidence             566666665433  47799999999764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=3e-12  Score=96.49  Aligned_cols=207  Identities=12%  Similarity=0.029  Sum_probs=130.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      .+++|++++.|+.|.+||.++++.+..+..+.. ..+.++.+.|  +|++++  +.++.|..||. +++.+.    .+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W----~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATK--AGEILF--SYSKGAKMITR-DGRELW----NIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEE----EEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEE----EEcC
Confidence            457899999999999999999999999887642 2488999999  999888  44678999998 666543    3332


Q ss_pred             cc-ceEEEEeeccCCccceecCCCCceEEEec-cCceeee-ccC----C----CCCeEecCCCCeEEEEecCCCceEEEE
Q 024245          109 NS-YHFCKLSLVKEPYANAKQANEPKDCYERE-VGETVDT-DSL----C----DSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (270)
Q Consensus       109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~----~----~~~~~~s~~~~~~~~~~~~~d~~i~iw  177 (270)
                      .. ...................+....++.+. .++.+.. .+.    .    ...+++.++|..++  +...++.|..|
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~  151 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV--PLFATSEVREI  151 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE--EETTTTEEEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEE--EecCCCEEEEE
Confidence            21 12222222222211111111122333322 2322211 111    1    11177889998655  45568999999


Q ss_pred             eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----
Q 024245          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----  252 (270)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----  252 (270)
                      |.. |+.+.++..        .     .....+. ..|   +|. +++++..++.|..+|..+ ++.+..+....     
T Consensus       152 d~~-G~~~w~~~~--------~-----~~~~~~~-~~~---~g~-~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          152 APN-GQLLNSVKL--------S-----GTPFSSA-FLD---NGD-CLVACGDAHCFVQLNLES-NRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             CTT-SCEEEEEEC--------S-----SCCCEEE-ECT---TSC-EEEECBTTSEEEEECTTT-CCEEEEEEGGGSBSCC
T ss_pred             CCC-CCEEEEEEC--------C-----CCcccee-EcC---CCC-EEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCCcc
Confidence            998 999998873        1     1233344 555   455 888888888999999998 88888776432     


Q ss_pred             -CCeeEEEeecCCCce
Q 024245          253 -EPGLECSMWRNPITM  267 (270)
Q Consensus       253 -~~v~~~~~s~~g~~l  267 (270)
                       ..+..++..++|.++
T Consensus       212 l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             CSEEEEEEECTTSCEE
T ss_pred             ccccccceEcCCCCEE
Confidence             125677777777653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.56  E-value=5.3e-13  Score=113.00  Aligned_cols=233  Identities=10%  Similarity=0.004  Sum_probs=135.2

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEe--cCCCcEEEEeCCCCceeEEEeecCCCcceE---------EEEEe--eCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIV---------SVATG--PSIG   75 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~   75 (270)
                      -....+.+|...|..++|++++.++++.  +.++...||....+.....+..+.  ..+.         ...|+  |  |
T Consensus        14 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~SP--D   89 (662)
T 3azo_A           14 IDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP--WNVRNRVFEYSGFPWAGVPRP--A   89 (662)
T ss_dssp             CCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT--CCBCCCGGGTCCCCEEEECCS--S
T ss_pred             CCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC--ccccccccccCCccceeeeec--C
Confidence            3456688899999999999887777777  668899999965455555565554  3355         56666  8  8


Q ss_pred             CCE-EEEEeC-CCcEEEEEcc--C-CccCCCCccceec--ccceEEEEeeccCCccceecCC-------------CCceE
Q 024245           76 LNK-VISQGR-DGTVKCWDIE--N-GGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQAN-------------EPKDC  135 (270)
Q Consensus        76 ~~~-l~s~~~-d~~i~~wd~~--~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  135 (270)
                      |+. |+.++. +..|.+|++.  + +....  +.....  +....  ..+.+++++..+...             .....
T Consensus        90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~--~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRW--ADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             SSCEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEE--EEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CCeEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccc--cCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence            888 765543 5566666665  2 33211  111100  11122  223333333222111             12344


Q ss_pred             EEecc------Cceeeecc-CCCCC---eEecCCCCeEEEEecCC------CceEEEEeCC-Ccc--eeeeeccCcCCCC
Q 024245          136 YEREV------GETVDTDS-LCDSK---DDVPAEGPKYMAVAGEQ------LSEVEIWDLN-TAE--RCTRLHQNSCGGS  196 (270)
Q Consensus       136 ~~~~~------~~~~~~~~-~~~~~---~~~s~~~~~~~~~~~~~------d~~i~iwd~~-~~~--~~~~~~~~~~~~~  196 (270)
                      |++..      ++. .... .++..   ++|||||++++.++...      ...|++||+. +++  ....+..      
T Consensus       166 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~------  238 (662)
T 3azo_A          166 VPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG------  238 (662)
T ss_dssp             EETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE------
T ss_pred             EECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC------
Confidence            66655      332 2222 22222   89999999877644332      2589999998 561  2333331      


Q ss_pred             CCcccCCCceeeeeeecCCCCCCCceEEEEecCCC--cEEEEEcCCCCcceeeeeccCCC--------eeEEEeecCCCc
Q 024245          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEP--------GLECSMWRNPIT  266 (270)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~  266 (270)
                       +|    ...+..+. |+|   ||+ ++++++.++  .|++||+.+ ++.......+...        +..++|+|++.+
T Consensus       239 -~~----~~~~~~~~-~sp---dg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          239 -GP----EEAIAQAE-WAP---DGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             -ET----TBCEEEEE-ECT---TSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred             -CC----CceEcceE-ECC---CCe-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEE
Confidence             22    23566777 999   566 788888888  566666655 5544444333222        567888888876


Q ss_pred             e
Q 024245          267 M  267 (270)
Q Consensus       267 l  267 (270)
                      +
T Consensus       308 ~  308 (662)
T 3azo_A          308 A  308 (662)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=4.4e-12  Score=104.74  Aligned_cols=226  Identities=12%  Similarity=-0.012  Sum_probs=137.1

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCC--CCceeEEEeecCCCcceEEEEEe----eCCCCCEEEEEe-CCCcEEEE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATG----PSIGLNKVISQG-RDGTVKCW   91 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~~-~d~~i~~w   91 (270)
                      ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+....   ....++|+    |  +|+++++++ .+++|.++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKMEGW--EDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCSTTC--TTTEEEEEEEETTEEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccccCC--CCCEEEEEEccCCeEEEE
Confidence            356789999999999999999999999995  778887776543   36899999    7  888887665 46899999


Q ss_pred             EccCCccCCCCccceeccc----------c-eEEEEeeccCCcc--ceecCCCCceEEEeccCceeee-cc-CC-CCC-e
Q 024245           92 DIENGGLSSNPSLTIKTNS----------Y-HFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDT-DS-LC-DSK-D  154 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~-~  154 (270)
                      |..+.+.+.    .+....          . ....+........  ......+.+.+++....+.+.. .. .+ +.. +
T Consensus       272 D~~t~~~~~----~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~  347 (567)
T 1qks_A          272 DGETLEPKK----IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  347 (567)
T ss_dssp             ETTTCCEEE----EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             ECCCCcEEE----EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence            988876543    222110          0 1111111111111  1111223333344433321111 11 11 111 7


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc-CcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCc
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS  232 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~  232 (270)
                      .|+|+|+++++++. .++.|.++|+.+++.+..+.. .    ...|.  ..+..   - ++|+  .+. .++++. .++.
T Consensus       348 ~~~pdgr~~~va~~-~sn~V~ViD~~t~kl~~~i~vgg----~~Php--g~g~~---~-~~p~--~g~-v~~t~~~g~~~  413 (567)
T 1qks_A          348 GLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGG----QTPHP--GRGAN---F-VHPT--FGP-VWATSHMGDDS  413 (567)
T ss_dssp             EECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSS----SSBCC--TTCEE---E-EETT--TEE-EEEEEBSSSSE
T ss_pred             eECCCCCEEEEEeC-CCCeEEEEECCCCcEEEEEeccC----cCCCC--cccee---e-ECCC--CCc-EEEeCCCCCCe
Confidence            89999998887554 468899999999988776652 0    00111  11211   1 4563  244 555553 5689


Q ss_pred             EEEEEcCCC------CcceeeeeccCCCeeEEEeecCCCce
Q 024245          233 ILVWDIRNP------GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       233 i~vwd~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      |.++|....      .+.++++......-..+..+||+++|
T Consensus       414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l  454 (567)
T 1qks_A          414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL  454 (567)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred             EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence            999998862      24567776544444557889998754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=2.3e-13  Score=115.83  Aligned_cols=230  Identities=10%  Similarity=-0.023  Sum_probs=133.6

Q ss_pred             cccccEEEEEEeCCCCEEE-----EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245           16 GHRASVTDVCFHQTKPILF-----AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~-----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~---   87 (270)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+..  .+........++|+|  +|+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wsp--Dg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTP--DSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEec--CCCEEEEEEecCCCCC
Confidence            4666799999999999998     566678999999999876511  111111126899999  9999998888776   


Q ss_pred             ----------EEEEEccCCccCCCCccceecccceEEE--EeeccCCccceecCC-CCceEEEeccCceeeeccCCCCC-
Q 024245           88 ----------VKCWDIENGGLSSNPSLTIKTNSYHFCK--LSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK-  153 (270)
Q Consensus        88 ----------i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  153 (270)
                                |++|++.++......+.....+......  ++.++.......... ....+|.+.........+..+.. 
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  273 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA  273 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence                      9999998876322112222222222222  222222221112122 22233433221111111111211 


Q ss_pred             ---eEecCCCCeEEEEecC--CCceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          154 ---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                         ..+ ++|. +++.+..  .++.|.+||+.+++.  ...+.        .+.  ....+..+. |+    ++. ++++
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~--~~~~l~~~~-~~----~~~-lv~~  335 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV--------PED--SSASLLSVS-IV----GGH-LSLE  335 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE--------CCC--SSCEEEEEE-EE----TTE-EEEE
T ss_pred             eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe--------cCC--CCCeEEEEE-EE----CCE-EEEE
Confidence               334 6777 6654431  358999999987653  23333        121  122345555 65    344 8889


Q ss_pred             ecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCce
Q 024245          227 GYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITM  267 (270)
Q Consensus       227 ~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l  267 (270)
                      ...|+..+||.+...++....+..+ ...+..++++|++..|
T Consensus       336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  377 (695)
T 2bkl_A          336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDA  377 (695)
T ss_dssp             EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEE
T ss_pred             EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEE
Confidence            9999998888776325555666654 5677888999988654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=2.5e-13  Score=115.02  Aligned_cols=186  Identities=9%  Similarity=-0.012  Sum_probs=117.8

Q ss_pred             ccccEEEEEEeCCCCEEEEecCC----------CcEEEEeCCC------CceeEEEe-ecCCCcceEEEEEeeCCCCCEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTG----------GELRIWDTVQ------HRTVSSSW-VHSAAHGIVSVATGPSIGLNKV   79 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l   79 (270)
                      |...+..++|+|||+.|++++.+          ..|++||+.+      ++.. .+. .+.  ..+..++|+|  ||++|
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~~~Sp--DG~~l  202 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH--RFVTGPRLSP--DGRQA  202 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS--SEECCCEECT--TSSEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC--CcccCceECC--CCCEE
Confidence            67789999999999999998877          5899999987      5544 343 333  5588899999  99999


Q ss_pred             EEEeCCC--------cEEEEEcc-CCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC
Q 024245           80 ISQGRDG--------TVKCWDIE-NGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (270)
Q Consensus        80 ~s~~~d~--------~i~~wd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (270)
                      +.++.++        .|.+||+. ++....  ...+... .....                                   
T Consensus       203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~~-----------------------------------  245 (662)
T 3azo_A          203 VWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAIA-----------------------------------  245 (662)
T ss_dssp             EEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCEE-----------------------------------
T ss_pred             EEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceEc-----------------------------------
Confidence            8777553        79999998 452100  0011100 00000                                   


Q ss_pred             CCCCeEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCce-----eeeeeecCCCCCCCce
Q 024245          150 CDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-----CMAVQAYLPSKSQGFV  222 (270)
Q Consensus       150 ~~~~~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~~p~~~~g~~  222 (270)
                         .++|+|||+ +++ +++.++  .|.+||+.+++......        ++.. ....     +..+. |+|   +++ 
T Consensus       246 ---~~~~spdg~-l~~-~~~~~~~~~l~~~~~~~~~~~~l~~--------~~~~-~~~p~w~~~~~~~~-~~~---~~~-  306 (662)
T 3azo_A          246 ---QAEWAPDGS-LIV-ATDRTGWWNLHRVDPATGAATQLCR--------REEE-FAGPLWTPGMRWFA-PLA---NGL-  306 (662)
T ss_dssp             ---EEEECTTSC-EEE-EECTTSSCEEEEECTTTCCEEESSC--------CSSB-SSCCCCSTTCCSEE-ECT---TSC-
T ss_pred             ---ceEECCCCe-EEE-EECCCCCeEEEEEECCCCceeeccc--------cccc-ccCccccccCceEe-EeC---CCE-
Confidence               056999998 554 445567  67777776666543333        2211 1100     23455 777   455 


Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE-EeecCC
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC-SMWRNP  264 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~s~~g  264 (270)
                      ++++++. +.++||.+...+..+..+..+...+..+ +++++.
T Consensus       307 ~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~  348 (662)
T 3azo_A          307 IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTR  348 (662)
T ss_dssp             EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTE
T ss_pred             EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCE
Confidence            8888888 9999995443233467777777777766 544443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=2.2e-11  Score=94.24  Aligned_cols=216  Identities=6%  Similarity=-0.145  Sum_probs=133.9

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      .....+.+. ++++.++...++.|.+||..+++.+..+...   .....+++++  ++...++...++.|.+||..+++.
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeE
Confidence            346778775 3455666667899999999999998888543   4488999999  875444444889999999998865


Q ss_pred             CCCCccceeccc-----ceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCC
Q 024245           99 SSNPSLTIKTNS-----YHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        99 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~  170 (270)
                      ..    .+....     .....+.+.......... ....+..+|..+++.......+...  ++++|+|+ +++++...
T Consensus       118 ~~----~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~  192 (328)
T 3dsm_A          118 TG----YIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGG  192 (328)
T ss_dssp             EE----EEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCB
T ss_pred             EE----EEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCC
Confidence            43    222111     011112222221112211 2345566787777655543333322  89999997 44433321


Q ss_pred             ---------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          171 ---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       171 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                               .+.|.++|..+++....+..        .   .......++ |+|+   ++ +|.++..  .|.+||..+ 
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~--------~---~g~~p~~la-~~~d---~~-~lyv~~~--~v~~~d~~t-  253 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF--------K---LGDWPSEVQ-LNGT---RD-TLYWINN--DIWRMPVEA-  253 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEEC--------C---TTCCCEEEE-ECTT---SC-EEEEESS--SEEEEETTC-
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEec--------C---CCCCceeEE-EecC---CC-EEEEEcc--EEEEEECCC-
Confidence                     27899999999887777652        1   012456676 9985   44 5555543  899999987 


Q ss_pred             Cccee--eeeccCCCeeEEEeecCC
Q 024245          242 GIPLT--AMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       242 ~~~~~--~~~~~~~~v~~~~~s~~g  264 (270)
                      ++...  .+......+..++++|++
T Consensus       254 ~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          254 DRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             SSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             CceeeeeeecCCCCceEEEEEcCCC
Confidence            54321  122224578899999943

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=1.4e-11  Score=93.95  Aligned_cols=227  Identities=13%  Similarity=0.111  Sum_probs=135.4

Q ss_pred             ccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ..+..--.+..|+++ +.++++...++.|..||..+++. ..+.. .  ..+.++++++  +++++++ . ++.|.+||.
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~--~~~~~i~~~~--dG~l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-D--APVSSVALRQ--SGGYVAT-I-GTKFCALNW   80 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-S--SCEEEEEEBT--TSSEEEE-E-TTEEEEEET
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-C--CceEEEEECC--CCCEEEE-E-CCeEEEEEC
Confidence            334445678999994 55777777889999999987655 33332 2  5589999999  8885554 3 567999999


Q ss_pred             cCCccCCCCccceecc--cceEEEEeeccCCccceecC----------CCCceEEEeccCceeeecc---CCCCCeEecC
Q 024245           94 ENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQA----------NEPKDCYEREVGETVDTDS---LCDSKDDVPA  158 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~  158 (270)
                      .+++...  +......  ......+.+...........          .....+|.+..........   .....++|+|
T Consensus        81 ~~g~~~~--~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           81 KEQSAVV--LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL  158 (297)
T ss_dssp             TTTEEEE--EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred             CCCcEEE--EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence            8775422  1111111  11122222222222111110          1223455554322221111   1111299999


Q ss_pred             CCCeEEEEecCCCceEEEEeC--CCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          159 EGPKYMAVAGEQLSEVEIWDL--NTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~--~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      +++.++++ .+.++.|.+||+  .++...  ..+..        . .........++ +.+   +|. +.++...++.|.
T Consensus       159 dg~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~-~~~~~~p~g~~-~d~---~G~-lwva~~~~~~v~  223 (297)
T 3g4e_A          159 DHKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYK--------L-EKEEQIPDGMC-IDA---EGK-LWVACYNGGRVI  223 (297)
T ss_dssp             TSCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEE--------C-CGGGCEEEEEE-EBT---TSC-EEEEEETTTEEE
T ss_pred             CCCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEE--------C-CCCCCCCCeeE-ECC---CCC-EEEEEcCCCEEE
Confidence            99877764 445789999987  455432  11210        0 00123445566 776   465 666666778899


Q ss_pred             EEEcCCCCcceeeeeccCCCeeEEEee-cCCCce
Q 024245          235 VWDIRNPGIPLTAMKVHLEPGLECSMW-RNPITM  267 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l  267 (270)
                      .||..+ ++.+..+..+...+++++|. ||+..|
T Consensus       224 ~~d~~t-G~~~~~i~~p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          224 RLDPVT-GKRLQTVKLPVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             EECTTT-CCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred             EEcCCC-ceEEEEEECCCCCceEEEEeCCCCCEE
Confidence            999988 78888888777789999999 887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.52  E-value=1.2e-12  Score=102.80  Aligned_cols=202  Identities=8%  Similarity=-0.046  Sum_probs=115.4

Q ss_pred             EEEEEEeCCCCE--EEEec-------------CCCcEEEEeCC-CCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEE
Q 024245           21 VTDVCFHQTKPI--LFAGT-------------TGGELRIWDTV-QHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        21 v~~~~~s~~~~~--l~s~~-------------~dg~i~vwd~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      +..++|+|+|++  +++++             .++.+.+|++. +++....+..  +.....+.+++|+|  +|++|+++
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~  162 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSA  162 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEE
Confidence            455889999984  55664             68999999997 4665544432  11115589999999  99988876


Q ss_pred             e-CCCcEEEEEcc-CCccCCCCcccee--cccceEEEEeeccCCccceec--CCCCceEEEec--cCcee-----eecc-
Q 024245           83 G-RDGTVKCWDIE-NGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQ--ANEPKDCYERE--VGETV-----DTDS-  148 (270)
Q Consensus        83 ~-~d~~i~~wd~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~-----~~~~-  148 (270)
                      . .++.|.+||+. +++...  +..+.  .+......+.+..........  ..+...+|++.  +++..     ...+ 
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~--~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  240 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVEL--VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEE--EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             cCCCCEEEEEEECCCCCEEE--eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence            5 46799999998 665321  11221  111222222322222222222  23445566654  33321     1112 


Q ss_pred             ---CCCC--------C--eE-ecCCCCeEEEEecCCC----ceEEEEeCC-Ccceeee---eccCcCCCCCCcccCCCce
Q 024245          149 ---LCDS--------K--DD-VPAEGPKYMAVAGEQL----SEVEIWDLN-TAERCTR---LHQNSCGGSPNFSSKGRGM  206 (270)
Q Consensus       149 ---~~~~--------~--~~-~s~~~~~~~~~~~~~d----~~i~iwd~~-~~~~~~~---~~~~~~~~~~~h~~~~~~~  206 (270)
                         .++.        .  ++ |+|||++++++....+    +.|.+|++. +++....   +.        .+    ...
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~--------~~----~~~  308 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP--------TP----TSG  308 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE--------CS----SCC
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee--------cC----CCC
Confidence               1222        2  88 9999998775433222    289999996 5654331   22        11    112


Q ss_pred             eeeeeecCCCCCCCceEEEEecC-CCcEEEEEcCC
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRN  240 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~-dg~i~vwd~~~  240 (270)
                      ...++ |+|..-||+ +|++++. ++.|.+|++..
T Consensus       309 ~~~~a-~sp~~~dg~-~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          309 GHSNA-VSPCPWSDE-WMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTCCC-EEECTTCTT-EEEEECSSSCEEEEEEEET
T ss_pred             cccce-ecCCCcCCC-EEEEEEcCCCeEEEEEEch
Confidence            33455 888100244 7777765 58999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.51  E-value=5.1e-13  Score=105.89  Aligned_cols=215  Identities=10%  Similarity=-0.133  Sum_probs=121.7

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE-------------------EEEeeCCCCCEEEEE-
Q 024245           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-------------------VATGPSIGLNKVISQ-   82 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~-   82 (270)
                      .+.|+|+|++|+.++.++.|++||+.+++.......+.  .....                   +.|+|  +++.++.. 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~  160 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAE  160 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCC--CCcceeeee
Confidence            47899999999999999999999999887666555443  21112                   34566  66665543 


Q ss_pred             ----eCCCcEEEEEccCCccCCCCccceecccceEEEEee-ccCCccceecCC------CCceEEEeccCceeeeccCCC
Q 024245           83 ----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN------EPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        83 ----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  151 (270)
                          ..+..|.+||+.+++...  +. ..........++. ..... .....+      .....+++..++.. ......
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~--~~-~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~  235 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEV--IH-QDTAWLGHPIYRPFDDSTV-GFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA  235 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEE-EEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred             eccCCCcceEEEEECCCCcEEe--ec-cCCcccccceECCCCCCEE-EEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence                356689999998876432  11 1111111112222 11111 111111      12334455433322 222221


Q ss_pred             -C-C---eEecCCCCeEEEEecC---CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          152 -S-K---DDVPAEGPKYMAVAGE---QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       152 -~-~---~~~s~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                       . .   ++|+|+|+.+++++..   .++.|++||+.+++.......             ... . +. |+|.  ||+ +
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-------------~~~-~-~~-~s~~--dg~-~  296 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-------------PPC-S-HL-MSNF--DGS-L  296 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-------------CSE-E-EE-EECS--SSS-E
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-------------CCC-C-CC-ccCC--CCc-e
Confidence             1 1   7999999977654321   124599999988765433221             011 1 44 8882  344 5


Q ss_pred             EEEec----------------CCCcEEEEEcCCCCcceeeeeccCC-----------CeeEEEeecCCCce
Q 024245          224 VLAGY----------------EDGSILVWDIRNPGIPLTAMKVHLE-----------PGLECSMWRNPITM  267 (270)
Q Consensus       224 l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l  267 (270)
                      +++++                .++.|++||+.+ ++. ..+..+..           .+..++|+|||+.|
T Consensus       297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             EEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             EEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence            66543                347899999987 553 34444444           25678999999865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=4.8e-12  Score=98.60  Aligned_cols=209  Identities=12%  Similarity=0.009  Sum_probs=125.5

Q ss_pred             ccEEEEEEeCCCCEEEEecCC---C--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC--------
Q 024245           19 ASVTDVCFHQTKPILFAGTTG---G--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--------   85 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------   85 (270)
                      ..+..++|+|||++|+.++.+   +  .|.+||+.+++........   . +..++|+|  +|+.|+.++.+        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNE--DSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECT--TSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECC--CCCEEEEEEccCCCcCCcE
Confidence            457889999999998887654   2  4888898887766554433   4 89999999  99988877632        


Q ss_pred             -------------------CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-------C-CceEEEe
Q 024245           86 -------------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-------E-PKDCYER  138 (270)
Q Consensus        86 -------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~  138 (270)
                                         ..|.+||+.+++...    .+.........++...   ..+....       . ...+|.+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EFEKPRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEE----EEEEETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEe----eecCCCcccccCCCCe---EEEEEecccccccccccccEEEe
Confidence                               568899998876411    1111122222222222   1111111       1 2345554


Q ss_pred             ccCceeeeccCCCCC-eEecCCCCeEEEEecCC------CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee-e
Q 024245          139 EVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQ------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA-V  210 (270)
Q Consensus       139 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~  210 (270)
                      ..++ ....... .. ..++|+|+.+++.+...      ...|.+||  +++......        ++    ...+.. +
T Consensus       206 d~~~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--------~~----~~~~~~~~  269 (347)
T 2gop_A          206 EDGK-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--------EV----DRGVGQAK  269 (347)
T ss_dssp             ETTE-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--------TC----CSEEEEEE
T ss_pred             CCCc-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--------cC----CcccCCcc
Confidence            4332 2222222 22 44599999877644321      25788888  455433332        22    223443 5


Q ss_pred             eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      . |+ +   +  ++++++.++.++|| +.+ ++....+ .+...|.+++|+| ..++
T Consensus       270 ~-~s-d---g--~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s~-~~~~  315 (347)
T 2gop_A          270 I-KD-G---K--VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVDE-IVVY  315 (347)
T ss_dssp             E-ET-T---E--EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEESS-SEEE
T ss_pred             E-Ec-C---c--EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeeeC-cEEE
Confidence            5 87 3   3  78888899999999 885 6654444 4477899999998 5443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=3.8e-11  Score=92.13  Aligned_cols=226  Identities=8%  Similarity=0.002  Sum_probs=132.2

Q ss_pred             cccccccEEEEEEeCCCCEEEE-------ecCCCcEEEEeCCCCceeEEEe----ecCCCcceEEEEEeeCCC-CCEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFA-------GTTGGELRIWDTVQHRTVSSSW----VHSAAHGIVSVATGPSIG-LNKVIS   81 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~-~~~l~s   81 (270)
                      +...-....+++|+++|.++++       +..++.|.+||..+++......    ++.  ..+.++++++  + ++++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~~~~~i~~~~--~~g~l~v~   88 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQCDR--DANQLFVA   88 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEEECS--SSSEEEEE
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC--CCCceEEEec--CCCcEEEE
Confidence            3444456789999999988887       6778899999988776543221    122  4488999999  8 665555


Q ss_pred             EeCCCcEEEEEccCCccCCCCc-ccee-cc-cceEEEEeeccCCccceecCCC--------------CceEEEeccCcee
Q 024245           82 QGRDGTVKCWDIENGGLSSNPS-LTIK-TN-SYHFCKLSLVKEPYANAKQANE--------------PKDCYEREVGETV  144 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  144 (270)
                      .. .+.|.+||.. ++...  . .... .. ......+...............              ...++.+......
T Consensus        89 ~~-~~~l~~~d~~-g~~~~--~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  164 (314)
T 1pjx_A           89 DM-RLGLLVVQTD-GTFEE--IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM  164 (314)
T ss_dssp             ET-TTEEEEEETT-SCEEE--CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred             EC-CCCEEEEeCC-CCEEE--EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence            44 4478899988 55322  1 1100 00 0111222222222111111111              1234444322212


Q ss_pred             eeccC---CCCCeEec----CCCCeEEEEecCCCceEEEEeCC-Ccce-----eeeeccCcCCCCCCcccCCCceeeeee
Q 024245          145 DTDSL---CDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLN-TAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (270)
Q Consensus       145 ~~~~~---~~~~~~~s----~~~~~~~~~~~~~d~~i~iwd~~-~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (270)
                      .....   ....++++    |+++.+++ +...++.|.+||.. +++.     ...+.        ++.   ......++
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--------~~~---~~~p~~i~  232 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIP--------GTH---EGGADGMD  232 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECC--------CCS---SCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEECC--------CCC---CCCCCceE
Confidence            11111   11128899    99976665 34457899999986 3432     11222        110   03455666


Q ss_pred             ecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       212 ~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                       +++   +|+ ++++...++.|.+||..+ ++.+..+..+...+.+++|+|+|.
T Consensus       233 -~d~---~G~-l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          233 -FDE---DNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             -EBT---TCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSS
T ss_pred             -ECC---CCC-EEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCC
Confidence             887   455 677766788999999986 666677776667899999999997

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=1.6e-11  Score=101.42  Aligned_cols=185  Identities=13%  Similarity=-0.036  Sum_probs=124.9

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc--CCccCCCCccc
Q 024245           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLT  105 (270)
Q Consensus        28 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~  105 (270)
                      +.+.++++...++.|.++|..+++.+..+...   ..+..+.|+|  +|+++++++.|+.|.+||+.  +.+...    .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~----~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVA----E  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEE----E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeE----E
Confidence            44557788888999999999999999888754   3478999999  99999999999999999995  443221    2


Q ss_pred             eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec----CCCCeEEEEecCCCceEEEEeCCC
Q 024245          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      +.......                                       .++|+    |+|+++++ +...+++|.|+|..+
T Consensus       236 i~~G~~P~---------------------------------------~ia~s~~~~pDGk~l~v-~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          236 IKIGSEAR---------------------------------------SIETSKMEGWEDKYAIA-GAYWPPQYVIMDGET  275 (567)
T ss_dssp             EECCSEEE---------------------------------------EEEECCSTTCTTTEEEE-EEEETTEEEEEETTT
T ss_pred             EecCCCCc---------------------------------------eeEEccccCCCCCEEEE-EEccCCeEEEEECCC
Confidence            22111110                                       05688    69998876 455679999999999


Q ss_pred             cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc-eeeeeccCCCeeEEEe
Q 024245          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPGLECSM  260 (270)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~  260 (270)
                      .+.+.++...... ..+........+..+. .++.   +..++++...+|.|.++|....... +..+ .......++.|
T Consensus       276 ~~~~~~i~~~~~~-~~~~~~~p~~rva~i~-~s~~---~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~  349 (567)
T 1qks_A          276 LEPKKIQSTRGMT-YDEQEYHPEPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGL  349 (567)
T ss_dssp             CCEEEEEECCEEC-TTTCCEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEE
T ss_pred             CcEEEEEeccccc-cccccccCCCceEEEE-EcCC---CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceE
Confidence            9988887631000 0000000011344555 6664   3337778888899999999873222 2222 23446778999


Q ss_pred             ecCCCce
Q 024245          261 WRNPITM  267 (270)
Q Consensus       261 s~~g~~l  267 (270)
                      +|||+++
T Consensus       350 ~pdgr~~  356 (567)
T 1qks_A          350 DGSHRYF  356 (567)
T ss_dssp             CTTSCEE
T ss_pred             CCCCCEE
Confidence            9999975

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=4e-12  Score=99.45  Aligned_cols=169  Identities=13%  Similarity=0.091  Sum_probs=115.0

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-----------eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      .++.+++++...++++|+.++ +++|++++.+           ..... ...  . |+.++| .  + +.|+++ .++.|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp--~-V~~l~f-d--~-~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIP--D-VIFVCF-H--G-DQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECT--T-EEEEEE-E--T-TEEEEE-ESSEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCC--C-eeEEEE-C--C-CEEEEE-cCCcE
Confidence            689999999999999999985 7779976433           11222 232  5 999999 4  4 888888 88999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++||+.+.....    ..+........                                      +.+.+  ..+++  +
T Consensus       109 ~v~dv~sl~~~~----~~~~~~~~v~~--------------------------------------i~~~~--p~~av--~  142 (388)
T 1xip_A          109 YSLDLEELSEFR----TVTSFEKPVFQ--------------------------------------LKNVN--NTLVI--L  142 (388)
T ss_dssp             EEEESSSTTCEE----EEEECSSCEEE--------------------------------------EEECS--SEEEE--E
T ss_pred             EEEEchhhhccC----ccceeecceee--------------------------------------EEecC--CCEEE--E
Confidence            999998764211    11111111110                                      11111  23433  3


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc--ee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LT  246 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~--~~  246 (270)
                      ..||.|.+||+.++.... +.               ..+.+++ |+|.   |   ++.|..||++++|+... ++.  ..
T Consensus       143 ~~dG~L~v~dl~~~~~~~-~~---------------~~Vs~v~-WSpk---G---~~vg~~dg~i~~~~~~~-~~~~~k~  198 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTKQ-LA---------------QNVTSFD-VTNS---Q---LAVLLKDRSFQSFAWRN-GEMEKQF  198 (388)
T ss_dssp             ETTSEEEEEETTTCCEEE-EE---------------ESEEEEE-ECSS---E---EEEEETTSCEEEEEEET-TEEEEEE
T ss_pred             ECCCCEEEEEccCCcccc-cc---------------CCceEEE-EcCC---c---eEEEEcCCcEEEEcCCC-ccccccc
Confidence            458999999999777643 22               2577887 9995   4   67788999999998886 443  44


Q ss_pred             ee------e---ccCCCeeEEEeecCCCcee
Q 024245          247 AM------K---VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~------~---~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++      .   +|...|.+|.|.+++.++-
T Consensus       199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          199 EFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             EECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             eecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            55      2   3678899999999988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.46  E-value=7.7e-12  Score=98.09  Aligned_cols=212  Identities=10%  Similarity=0.042  Sum_probs=117.5

Q ss_pred             CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCcccee
Q 024245           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIK  107 (270)
Q Consensus        38 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~  107 (270)
                      .|+.|.+||..+++.+..+..+.  .+  .++|+|  +++++++++          .++.|.+||..+.+...    .+.
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~----~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAF--NG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK----EIS   98 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCE--EE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE----EEE
T ss_pred             ccCeEEEEECCCCeEEEEecCCC--CC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE----EEE
Confidence            47899999999999888887654  33  899999  999998876          36789999998876543    222


Q ss_pred             cc--------cceEEEEeeccCCccceecC-CCCceEEEeccCceeee-ccCCCCC-eEecCCCCeEEEEecCCCceEEE
Q 024245          108 TN--------SYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI  176 (270)
Q Consensus       108 ~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~i  176 (270)
                      ..        ......++............ ...+.+||+.+.+.+.. ...+... +.+.|++...+++ .+.||.+.+
T Consensus        99 ~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~-~~~dg~~~~  177 (361)
T 2oiz_A           99 LPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMT-ICGDGGLLT  177 (361)
T ss_dssp             ECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEE-EETTSSEEE
T ss_pred             cCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEE-ECCCCcEEE
Confidence            11        11112222222222222222 34567788888776554 2221111 3455555333332 223566666


Q ss_pred             EeCCC-cceeee------eccCcCC--CC---CC-------c----------ccC-------------------CCceee
Q 024245          177 WDLNT-AERCTR------LHQNSCG--GS---PN-------F----------SSK-------------------GRGMCM  208 (270)
Q Consensus       177 wd~~~-~~~~~~------~~~~~~~--~~---~~-------h----------~~~-------------------~~~~~~  208 (270)
                      |+... ++....      +......  ..   .+       +          ...                   ......
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred             EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence            66543 222200      0000000  00   00       0          000                   000000


Q ss_pred             eeeecCCCCCCCceEEEEec----------CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          209 AVQAYLPSKSQGFVNVLAGY----------EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .++ |+|+   +...+++..          ..+.|.+||+.+ .+.+..+..+.  +.+++|+|||++|
T Consensus       258 ~~a-~~~d---g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l  319 (361)
T 2oiz_A          258 LVG-LHRA---SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLM  319 (361)
T ss_dssp             CEE-EETT---TTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEE
T ss_pred             EEE-EecC---CCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEE
Confidence            134 7774   332344333          134899999999 88999998876  9999999999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=1.1e-10  Score=87.59  Aligned_cols=218  Identities=7%  Similarity=-0.085  Sum_probs=124.5

Q ss_pred             cEEEEEEeCCCCEEE-EecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           20 SVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      ...+++++++|++++ +...++.|.+||..+...........  ..+.++++.+  +++++++.. ++.|.+||..+...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL--YQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC--CSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc--CCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceE
Confidence            788999999999777 55778899999976554332211222  4478999999  878666655 88999999876543


Q ss_pred             CCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCC---CCeEecCCCCeEEEEecCCCce
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCD---SKDDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~d~~  173 (270)
                      ..   .... .......+.+..... .....  .+....++............+.   ..++++++|. ++++ ...++.
T Consensus       100 ~~---~~~~-~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~-~~~~~~  172 (270)
T 1rwi_B          100 TV---LPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVT-DTDNNR  172 (270)
T ss_dssp             EE---CCCC-SCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEE-EGGGTE
T ss_pred             ee---eecC-CcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEE-ECCCCE
Confidence            21   1111 111222233332222 22221  2223333322222221111111   1289999997 5543 334689


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCC
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  253 (270)
                      |.+||...........        .+    ......++ +.|+   |. ++++...++.|.+||... .........+..
T Consensus       173 i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~d~~---g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~  234 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPF--------TD----ITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLN  234 (270)
T ss_dssp             EEEECTTTCCEEECCC--------SS----CCSEEEEE-ECTT---CC-EEEEETTTSCEEEECTTC-SCCEECCCCSCS
T ss_pred             EEEEecCCCceEeecc--------cC----CCCceEEE-ECCC---CC-EEEEECCCCcEEEEcCCC-CcceeeccCCCC
Confidence            9999988655433222        11    13456676 8874   54 777777788999999875 333322222335


Q ss_pred             CeeEEEeecCCCce
Q 024245          254 PGLECSMWRNPITM  267 (270)
Q Consensus       254 ~v~~~~~s~~g~~l  267 (270)
                      .+.+++++++|.++
T Consensus       235 ~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          235 TPLAVAVDSDRTVY  248 (270)
T ss_dssp             CEEEEEECTTCCEE
T ss_pred             CceeEEECCCCCEE
Confidence            78999999998653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.44  E-value=5.5e-12  Score=108.14  Aligned_cols=83  Identities=10%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             ccccccccccc-----EEEEEEeCCCCEEEEecCC---------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC
Q 024245           10 PVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (270)
Q Consensus        10 ~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (270)
                      ....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+.  ..+...+|+|  +
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~--~~~~~~~~SP--d  122 (740)
T 4a5s_A           48 SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP--NNTQWVTWSP--V  122 (740)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC--TTEEEEEECS--S
T ss_pred             eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC--CcceeeEECC--C
Confidence            34445555432     3458899999999998876         567799999887654 44444  5699999999  9


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcc
Q 024245           76 LNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        76 ~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      |+.|+.+. |+.|.+||+.+++.
T Consensus       123 G~~la~~~-~~~i~~~~~~~~~~  144 (740)
T 4a5s_A          123 GHKLAYVW-NNDIYVKIEPNLPS  144 (740)
T ss_dssp             TTCEEEEE-TTEEEEESSTTSCC
T ss_pred             CCEEEEEE-CCeEEEEECCCCce
Confidence            99998874 68999999987764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=2.4e-11  Score=104.20  Aligned_cols=227  Identities=10%  Similarity=-0.003  Sum_probs=131.0

Q ss_pred             cccccEEEEEEeCCCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc---
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~---   87 (270)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+... .+.  ..+..++|+|  + +.|+.++.++.   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~--~~~~~~~wsp--D-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKW--VKFSGLAWLG--N-DALLYSRFAEPKEG  233 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEE--EESCCCEEST--T-SEEEEEECCCC---
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCC--ceeccEEEEC--C-CEEEEEEecCcccc
Confidence            344578899999999998876543     46999999998876532 122  2246789999  9 88887776554   


Q ss_pred             -----------EEEEEccCCccCCCCccceecccceEEEEeeccCCcc----ceecC----CCCceEEEeccCce--eee
Q 024245           88 -----------VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA----NAKQA----NEPKDCYEREVGET--VDT  146 (270)
Q Consensus        88 -----------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~--~~~  146 (270)
                                 |.+|++.++......+.............  .+++.+    .....    .....++++..+..  ...
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~--~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA--SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE--EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE--EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                       88999877653221122222221112222  223332    11111    12344567665521  222


Q ss_pred             ccCCCCC--eEecCCCCeEEEEecC--CCceEEEEeCCCcc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          147 DSLCDSK--DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       147 ~~~~~~~--~~~s~~~~~~~~~~~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                      .......  ..++|+|+.+++.+..  .++.|.+||+.++. ....+..       .+    ...+..+. |.    ++.
T Consensus       312 l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------~~----~~~l~~~~-~~----~~~  375 (741)
T 1yr2_A          312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------ES----KDNLESVG-IA----GNR  375 (741)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------CC----SSEEEEEE-EE----BTE
T ss_pred             ecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------CC----CCeEEEEE-EE----CCE
Confidence            2222222  3356899888775532  24669999998752 3333331       22    12344444 54    344


Q ss_pred             eEEEEecCCCcEEEEEcCCCCcceeeeecc-CCCeeEEEeecCCCce
Q 024245          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPGLECSMWRNPITM  267 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l  267 (270)
                       ++++...|+..+||.+...+.....+..+ ...+..++++|++..|
T Consensus       376 -lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          376 -LFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             -EEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred             -EEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence             88888899988887665325555666543 5678899999998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.43  E-value=1e-10  Score=88.60  Aligned_cols=196  Identities=9%  Similarity=0.074  Sum_probs=117.1

Q ss_pred             cccccEEEEEEe-CCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           16 GHRASVTDVCFH-QTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        16 ~h~~~v~~~~~s-~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +|...+.++++. +++.++++... ++.|++|| .+++.+..+..... ..+.++++.|  +++++++...++.|.+||.
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~-~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~  149 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL-QHPRGVTVDN--KGRIIVVECKVMRVIIFDQ  149 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC-SCEEEEEECT--TSCEEEEETTTTEEEEECT
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC-CCceEEEEeC--CCCEEEEECCCCEEEEEcC
Confidence            345678999995 67776666643 78999999 55776666643221 4589999999  8888888888899999996


Q ss_pred             cCCccCCCCcccee--cccceEEEEeeccCCcccee-cCCCCceEEEeccCceeee-ccCCCCC----eEecCCCCeEEE
Q 024245           94 ENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDT-DSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~s~~~~~~~~  165 (270)
                      ... ...    .+.  ........+.+......... .....+..|+... +.+.. ...++..    ++++++|. +++
T Consensus       150 ~g~-~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~-l~v  222 (286)
T 1q7f_A          150 NGN-VLH----KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGE-ILI  222 (286)
T ss_dssp             TSC-EEE----EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCC-EEE
T ss_pred             CCC-EEE----EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCC-EEE
Confidence            532 211    221  11112223333332221111 1133445566532 22221 1122111    89999996 444


Q ss_pred             EecCCCc-eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          166 VAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       166 ~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      + ...++ .|.+||. +++.+..+..        +.  ....+..++ ++|   +|+ ++++ +.|+.|++|++..
T Consensus       223 ~-~~~~~~~i~~~~~-~g~~~~~~~~--------~~--~~~~~~~i~-~~~---~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          223 A-DNHNNFNLTIFTQ-DGQLISALES--------KV--KHAQCFDVA-LMD---DGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             E-ECSSSCEEEEECT-TSCEEEEEEE--------SS--CCSCEEEEE-EET---TTE-EEEE-ETTTEEEEEECSC
T ss_pred             E-eCCCCEEEEEECC-CCCEEEEEcc--------cC--CCCcceeEE-ECC---CCc-EEEE-CCCCeEEEEEccc
Confidence            3 33354 9999995 4677766652        21  122355676 888   465 5666 5699999999876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=3.9e-10  Score=87.13  Aligned_cols=221  Identities=11%  Similarity=0.027  Sum_probs=128.6

Q ss_pred             ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ....+..|+|+ +.++++...++.|..||..+++.. .+.. .  ..+.+++|++  +++++++. .+ .|.+||..+++
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~--~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--FMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGV  120 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--SCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCC
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-C--CcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCc
Confidence            34578899996 556777777899999999876543 3332 2  4599999999  87776654 44 49999998776


Q ss_pred             cCCCCccceecc--cceEEEEeeccCCccceecCC-----CCceEEEeccCceeeeccC---CCCCeEecCCCCeEEEEe
Q 024245           98 LSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDSL---CDSKDDVPAEGPKYMAVA  167 (270)
Q Consensus        98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~  167 (270)
                      ...  +......  ......+.+...........+     ....+|.+..++ ......   ....++|+|+++.++++ 
T Consensus       121 ~~~--~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~-  196 (326)
T 2ghs_A          121 LTL--HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFV-  196 (326)
T ss_dssp             EEE--EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEE-
T ss_pred             EEE--EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCCEEEEE-
Confidence            422  1111110  111222223222221111111     123455544332 221111   11128999999877664 


Q ss_pred             cCCCceEEEEeCC--Cc-cee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          168 GEQLSEVEIWDLN--TA-ERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       168 ~~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ...++.|.+||+.  ++ +..  ..+..        . .........+. +.+   +|. ++++...++.|.+||. + +
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--------~-~~~~~~p~gi~-~d~---~G~-lwva~~~~~~v~~~d~-~-g  260 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFID--------S-TGIKGGMDGSV-CDA---EGH-IWNARWGEGAVDRYDT-D-G  260 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEE--------C-TTSSSEEEEEE-ECT---TSC-EEEEEETTTEEEEECT-T-C
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEE--------C-CCCCCCCCeeE-ECC---CCC-EEEEEeCCCEEEEECC-C-C
Confidence            4456899999986  55 321  11210        0 00122344565 776   455 5555556788999998 4 6


Q ss_pred             cceeeeeccCCCeeEEEee-cCCCce
Q 024245          243 IPLTAMKVHLEPGLECSMW-RNPITM  267 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s-~~g~~l  267 (270)
                      +.+..+..+...+++++|+ |++..|
T Consensus       261 ~~~~~i~~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          261 NHIARYEVPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCEE
Confidence            6777777766789999999 887543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=4.3e-10  Score=88.38  Aligned_cols=204  Identities=9%  Similarity=-0.034  Sum_probs=121.3

Q ss_pred             EEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeec-CC----CcceEEEEEeeCCCCCEEEEEeC--C
Q 024245           23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D   85 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~s~~~--d   85 (270)
                      .++++|||++++.+.          .++.|.+||..+.+.+..+... ..    ......+.|+|  +|++|+.++.  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCC
Confidence            899999999988875          3678999999988888776543 00    01245899999  9999998874  5


Q ss_pred             CcEEEEEccCCccCCCCccceec-------ccceEEEEeecc------------------------CC---------cc-
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKT-------NSYHFCKLSLVK------------------------EP---------YA-  124 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------------------~~---------~~-  124 (270)
                      +.|.++| .+++.... +.....       ....+.......                        .+         .. 
T Consensus       148 ~~v~viD-~t~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQ-LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             CeEEEEE-CCCCEEeE-EcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence            7899999 88875442 011100       000000000000                        00         00 


Q ss_pred             --ceecCCCCceEEEeccCc-eeeeccC---------C--CCC---eEecCCCCeEEEEecC--------CCceEEEEeC
Q 024245          125 --NAKQANEPKDCYEREVGE-TVDTDSL---------C--DSK---DDVPAEGPKYMAVAGE--------QLSEVEIWDL  179 (270)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~-~~~~~~~---------~--~~~---~~~s~~~~~~~~~~~~--------~d~~i~iwd~  179 (270)
                        ......+....+|+.... .+...+.         +  ...   ++++|++++++++...        .++.|.++|+
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence              000001111222332211 0101110         0  111   7889999888875421        1368999999


Q ss_pred             CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCCcceeee
Q 024245          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  248 (270)
                      .+++.+.++..             ......+. |+|   ||+.+++++. .++.|.+||+.+ ++.+..+
T Consensus       306 ~t~~vv~~i~~-------------g~~p~~i~-~s~---Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i  357 (373)
T 2mad_H          306 LVGQTSSQISL-------------GHDVDAIS-VAQ---DGGPDLYALSAGTEVLHIYDAGA-GDQDQST  357 (373)
T ss_pred             CCCEEEEEEEC-------------CCCcCeEE-ECC---CCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence            99999988873             22466777 998   4553455555 589999999999 7777773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.37  E-value=2.5e-10  Score=88.28  Aligned_cols=201  Identities=9%  Similarity=-0.117  Sum_probs=125.1

Q ss_pred             cCCCcEEEEeCCCCceeEEEee----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccce
Q 024245           37 TTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (270)
Q Consensus        37 ~~dg~i~vwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  112 (270)
                      +.++.|.++|.++++....+..    ..-......+.+..   +..+++...++.|.+||..+++...    .+... ..
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~~~----~i~~~-~~   85 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKEVG----RITGF-TS   85 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCEEE----EEECC-SS
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEEEE----EcCCC-CC
Confidence            3488999999999877654421    11113367787744   3666677778999999999987644    33222 11


Q ss_pred             EEEEeeccCCccceec--CCCCceEEEeccCceeeeccCCC------CC--eEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245          113 FCKLSLVKEPYANAKQ--ANEPKDCYEREVGETVDTDSLCD------SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (270)
Q Consensus       113 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~  182 (270)
                      ...+.+.... .....  .......+|..+.+.......+.      ..  +++  ++..++++..+.++.|.++|+.++
T Consensus        86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence            2222221122 12222  34556677887776554333222      22  677  455676643324789999999999


Q ss_pred             ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC----------CcEEEEEcCCCCcceeeeecc-
Q 024245          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAMKVH-  251 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~-  251 (270)
                      +.+.++..       +      .....+. ++|   +|+ +++++..+          +.|.++|..+ ++....+... 
T Consensus       163 ~~~~~i~~-------g------~~p~~i~-~~~---dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~  223 (328)
T 3dsm_A          163 KVVDELTI-------G------IQPTSLV-MDK---YNK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKL  223 (328)
T ss_dssp             EEEEEEEC-------S------SCBCCCE-ECT---TSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCT
T ss_pred             eEEEEEEc-------C------CCccceE-EcC---CCC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCC
Confidence            98887763       1      1234555 887   566 55555544          7899999988 6766666532 


Q ss_pred             CCCeeEEEeecCCCce
Q 024245          252 LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~l  267 (270)
                      ...+..++|+||+..|
T Consensus       224 g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             TCCCEEEEECTTSCEE
T ss_pred             CCCceeEEEecCCCEE
Confidence            2468999999988754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=3e-10  Score=87.89  Aligned_cols=202  Identities=11%  Similarity=0.042  Sum_probs=123.4

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEee-------cCCCcceEEEEEeeCCCCCEEEEEe-CCCc
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWV-------HSAAHGIVSVATGPSIGLNKVISQG-RDGT   87 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~   87 (270)
                      +-.....++++|+|+++++...++.|++||..... .+..+..       .........++++|. +++++++.+ .++.
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSR  167 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCe
Confidence            34578899999999999998889999999986442 4544421       111135889999982 356666665 6899


Q ss_pred             EEEEEccCCccCCCCccceecc----------cceEEEEeeccCCccceec--CCCCceEEEeccCceeeecc-CCCCC-
Q 024245           88 VKCWDIENGGLSSNPSLTIKTN----------SYHFCKLSLVKEPYANAKQ--ANEPKDCYEREVGETVDTDS-LCDSK-  153 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-  153 (270)
                      |++||. +++...    .+...          ......+.+..........  ....+..|+..+++.+.... ..+.. 
T Consensus       168 I~~~~~-~g~~~~----~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~  242 (329)
T 3fvz_A          168 IVQFSP-SGKFVT----QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN  242 (329)
T ss_dssp             EEEECT-TSCEEE----EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred             EEEEcC-CCCEEE----EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence            999994 443322    22110          0112233333321222222  23445567776555544322 12222 


Q ss_pred             ---eEecCCCCeEEEE------ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          154 ---DDVPAEGPKYMAV------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       154 ---~~~s~~~~~~~~~------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                         ++++| + .++..      +...+..|++||..+++.+..+..        . .........++ ++|   +|. ++
T Consensus       243 ~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~--------~-~~~~~~p~~ia-~~~---dG~-ly  306 (329)
T 3fvz_A          243 VFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP--------V-RKHFDMPHDIV-ASE---DGT-VY  306 (329)
T ss_dssp             EEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--------S-SSCCSSEEEEE-ECT---TSE-EE
T ss_pred             cceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--------C-CCccCCeeEEE-ECC---CCC-EE
Confidence               77888 2 22222      233456899999999998888751        0 11233567787 998   464 88


Q ss_pred             EEecCCCcEEEEEcCC
Q 024245          225 LAGYEDGSILVWDIRN  240 (270)
Q Consensus       225 ~~~~~dg~i~vwd~~~  240 (270)
                      ++...++.|++|++..
T Consensus       307 vad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEESSSCCEEEEEEEE
T ss_pred             EEECCCCEEEEEeCCc
Confidence            8889999999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.35  E-value=5.8e-11  Score=91.95  Aligned_cols=219  Identities=7%  Similarity=-0.021  Sum_probs=127.8

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      ..|.++.|++++..++..+.++.++.|   .++....+..+.  ..+.+++|++  ++++++++..++.|.+||..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKG--LQLEGLNFDR--QGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSC--CCEEEEEECT--TSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccC--ccccCcEECC--CCCEEEEECCCCEEEEEeCCCCcE
Confidence            346778899988777777888899999   355566666555  4589999999  888778888899999999988764


Q ss_pred             CCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEeccCceeeecc-CCCCC----eEecCCCCeEEEEec
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYMAVAG  168 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~----~~~s~~~~~~~~~~~  168 (270)
                      ..  .  ..........+..............     .....++...+....... .....    ++++|+|..++ ++.
T Consensus        79 ~~--~--~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~  153 (333)
T 2dg1_A           79 KR--P--FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF-TDF  153 (333)
T ss_dssp             EE--E--EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE-EEC
T ss_pred             EE--E--eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE-Eec
Confidence            32  1  1111222233333322222222222     134445555444321111 11111    88999996444 332


Q ss_pred             C-----CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          169 E-----QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       169 ~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      .     ..+.|..+|..+++......         .    ......++ |+|+   |+.++++.+.++.|++||+.+.+.
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~---------~----~~~~~~i~-~~~d---g~~l~v~~~~~~~i~~~d~~~~g~  216 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQ---------N----ISVANGIA-LSTD---EKVLWVTETTANRLHRIALEDDGV  216 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEE---------E----ESSEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeec---------C----CCcccceE-ECCC---CCEEEEEeCCCCeEEEEEecCCCc
Confidence            1     13567777766544332222         1    11345666 9984   543455666788999999974333


Q ss_pred             ceeee--------eccCCCeeEEEeecCCCce
Q 024245          244 PLTAM--------KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       244 ~~~~~--------~~~~~~v~~~~~s~~g~~l  267 (270)
                      .+..+        .++ ..+..++++++|.++
T Consensus       217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~  247 (333)
T 2dg1_A          217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLY  247 (333)
T ss_dssp             SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEE
T ss_pred             CcccccceEEEecCCC-CCCCceEECCCCCEE
Confidence            33211        122 367889999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.34  E-value=2.4e-09  Score=83.54  Aligned_cols=216  Identities=10%  Similarity=-0.021  Sum_probs=134.5

Q ss_pred             EEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC-Cc
Q 024245           21 VTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GG   97 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~   97 (270)
                      -..++|+|||++++.+..  ++.|.++|+.+++.+.++....    . .. +.|. ....+++.+.||.+.+.++.+ ++
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~-~~P~-g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YH-IFPT-APDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EE-EEEE-ETTEEEEEETTSCEEEEECCSSSC
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ce-eecC-CCceeEEECCCCCEEEEECCCCCe
Confidence            345899999998888764  6899999999999998886532    2 22 2341 446777888899999999876 44


Q ss_pred             cCC--CCccceecccceEEEEeec-cCCccceecCCCCceEEEeccCce-eeec--------------cCCCCCeEecCC
Q 024245           98 LSS--NPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGET-VDTD--------------SLCDSKDDVPAE  159 (270)
Q Consensus        98 ~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~s~~  159 (270)
                      ...  ...+........ ....+. ......+...++....+|...... +...              ..+...++++++
T Consensus       212 v~~~~~~~~~~~~~~~~-~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~  290 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLI-NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA  290 (386)
T ss_dssp             CEEEECCCCSCTTSCBC-SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             EEEeecceecccccccc-ccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence            311  000000000000 000110 011112223333444455543321 1111              112233889999


Q ss_pred             CCeEEEEecC--------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCC
Q 024245          160 GPKYMAVAGE--------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYED  230 (270)
Q Consensus       160 ~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~d  230 (270)
                      +++++++...        ..+.|.++|+.+++.+.++..             ....+.+. ++|+   ++ .++++...+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------------g~~~~~la-vs~D---~~~~ly~tn~~~  353 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------------GHEIDSIN-VSQD---EKPLLYALSTGD  353 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------------EEEECEEE-ECSS---SSCEEEEEETTT
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-------------CCCcceEE-ECCC---CCeEEEEEcCCC
Confidence            9998886431        136799999999999999884             23567787 9985   43 245556679


Q ss_pred             CcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          231 GSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      +.|.++|..+ ++.+.+++. .+..+.|.+++|
T Consensus       354 ~~VsViD~~t-~k~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          354 KTLYIHDAES-GEELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             TEEEEEETTT-CCEEEEECC-CCSSCCEEEECC
T ss_pred             CeEEEEECCC-CcEEEEecC-CCCCceeEECCc
Confidence            9999999999 888888875 456678889887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.34  E-value=3.8e-10  Score=89.54  Aligned_cols=216  Identities=7%  Similarity=-0.033  Sum_probs=130.9

Q ss_pred             EEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeec-CC----CcceEEEEEeeCCCCCEEEEEeC--C
Q 024245           23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D   85 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~s~~~--d   85 (270)
                      .+.++|||++|+.+.          .++.|.++|..+++.+..+... ..    ......+.|+|  +|++|+.+..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCC
Confidence            799999999887775          3678999999999988887643 00    02246789999  9999998774  5


Q ss_pred             CcEEEEEccCCccCCCCccceeccc---------ceEEEEeeccC--------Ccc------------------------
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKE--------PYA------------------------  124 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------~~~------------------------  124 (270)
                      +.|.+.|+.+++...    .++...         ..+..++....        ...                        
T Consensus       200 ~~VsVID~~t~kvv~----~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          200 PAVGVVDLEGKTFDR----MLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             CEEEEEETTTTEEEE----EEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred             CeEEEEECCCCeEEE----EEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence            789999999987654    121110         00000000000        000                        


Q ss_pred             ----ceecCCCCceEEEeccCcee-eec--------------cCCCCCeEecCCCCeEEEEecC--------CCceEEEE
Q 024245          125 ----NAKQANEPKDCYEREVGETV-DTD--------------SLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIW  177 (270)
Q Consensus       125 ----~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~s~~~~~~~~~~~~--------~d~~i~iw  177 (270)
                          ......+....+|....... ...              ..+...++++|++++++++...        .++.|.++
T Consensus       276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence                00000111122233221110 000              0111127899999988875421        13689999


Q ss_pred             eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee
Q 024245          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL  256 (270)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~  256 (270)
                      |..+.+.+.++..             ....+.+. |+|+   |+ .++++...++.|.++|+.+ .+.+.++..-.....
T Consensus       356 D~~T~kvv~~I~v-------------g~~P~gia-~spD---g~~~lyv~n~~s~~VsVID~~t-~kvv~tI~~vG~~P~  417 (426)
T 3c75_H          356 NAETGERINKIEL-------------GHEIDSIN-VSQD---AEPLLYALSAGTQTLHIYDAAT-GEELRSVDQLGRGPQ  417 (426)
T ss_dssp             ETTTCCEEEEEEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEETTT-CCEEEEECCCSSSCC
T ss_pred             ECCCCeEEEEEEC-------------CCCcCeEE-EccC---CCEEEEEEcCCCCeEEEEECCC-CCEEEEecCCCCCCc
Confidence            9999999999873             23577777 9984   55 3555555799999999999 888888632122222


Q ss_pred             EEEeecC
Q 024245          257 ECSMWRN  263 (270)
Q Consensus       257 ~~~~s~~  263 (270)
                       +..+||
T Consensus       418 -~i~~~~  423 (426)
T 3c75_H          418 -IITTHD  423 (426)
T ss_dssp             -EEECCC
T ss_pred             -EEEcCC
Confidence             556654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.33  E-value=1.1e-09  Score=81.03  Aligned_cols=191  Identities=7%  Similarity=-0.032  Sum_probs=125.0

Q ss_pred             cccccccccc--cEEEEEEeCCCCEEEEecC--CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeC
Q 024245           10 PVAVLRGHRA--SVTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (270)
Q Consensus        10 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (270)
                      .+.++. |..  ....+.|++++.+.++.+.  ++.|.+.|+.+++.+..+..... .....+++..    +.|+ +.-.
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g----~~lyv~t~~   84 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLN----EKLYQVVWL   84 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEET----TEEEEEETT
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeC----CEEEEEEec
Confidence            344553 443  3689999998765555443  57999999999999988764332 1233455543    4554 5556


Q ss_pred             CCcEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      ++.+.++|..+.+...    .++.. ...                                         ..+++||+.+
T Consensus        85 ~~~v~viD~~t~~v~~----~i~~g~~~g-----------------------------------------~glt~Dg~~l  119 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIK----NFTHQMKDG-----------------------------------------WGLATDGKIL  119 (266)
T ss_dssp             CSEEEEEETTTTEEEE----EEECCSSSC-----------------------------------------CEEEECSSSE
T ss_pred             CCEEEEEECCCCcEEE----EEECCCCCe-----------------------------------------EEEEECCCEE
Confidence            8899999999876543    22211 100                                         2366788888


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +++.+  ++.|.++|..+.+.+..+..       +-..........+. |.    +|+ .++....++.|.+.|..+ ++
T Consensus       120 ~vs~g--s~~l~viD~~t~~v~~~I~V-------g~~~~p~~~~nele-~~----dg~-lyvn~~~~~~V~vID~~t-g~  183 (266)
T 2iwa_A          120 YGSDG--TSILYEIDPHTFKLIKKHNV-------KYNGHRVIRLNELE-YI----NGE-VWANIWQTDCIARISAKD-GT  183 (266)
T ss_dssp             EEECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTSSEEEEEETTT-CC
T ss_pred             EEECC--CCeEEEEECCCCcEEEEEEE-------CCCCcccccceeEE-EE----CCE-EEEecCCCCeEEEEECCC-Cc
Confidence            87543  68999999999988888773       11000111244555 65    354 556666788999999999 88


Q ss_pred             ceeeeeccC-------------CCeeEEEeecCCCce
Q 024245          244 PLTAMKVHL-------------EPGLECSMWRNPITM  267 (270)
Q Consensus       244 ~~~~~~~~~-------------~~v~~~~~s~~g~~l  267 (270)
                      .+..+....             ...+.|+|+|+++.+
T Consensus       184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             EEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            888776321             356899999998653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=5.2e-10  Score=85.61  Aligned_cols=226  Identities=8%  Similarity=0.010  Sum_probs=125.1

Q ss_pred             cccccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ..+...........|+|+|+ ++++...++.|..|+.. ++ ...+....  ..+..+++.+  +|+++++...++.|.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~--~~~~gl~~d~--dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDAT--AFTNGNAVDA--QQRLVHCEHGRRAITR  111 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESC--SCEEEEEECT--TSCEEEEETTTTEEEE
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCC--CccceeeECC--CCCEEEEECCCCEEEE
Confidence            33444556678899999998 67788888999999984 44 34454444  4589999999  8887766666678999


Q ss_pred             EEccCCccCCCCccceecc-c-ceEEEEeeccCCcccee----cC------------CCCceEEEec--cCceeeec-cC
Q 024245           91 WDIENGGLSSNPSLTIKTN-S-YHFCKLSLVKEPYANAK----QA------------NEPKDCYERE--VGETVDTD-SL  149 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~------------~~~~~~~~~~--~~~~~~~~-~~  149 (270)
                      |+.. ++...  +...... . .....+.+.........    ..            .....++.+.  +++..... +.
T Consensus       112 ~~~~-g~~~~--~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHL--LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLD  188 (305)
T ss_dssp             ECTT-SCEEE--EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEES
T ss_pred             ECCC-CCEEE--EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCC
Confidence            9875 43211  1000000 0 00011122211111110    00            0112333333  33322211 11


Q ss_pred             CCCCeEecCCCCeEEEEecCC----CceEEEEeCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          150 CDSKDDVPAEGPKYMAVAGEQ----LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       150 ~~~~~~~s~~~~~~~~~~~~~----d~~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      ....++|+|+++.++++....    ++.|.+||+..+...  ..+..       .    ..+....+. +.+   +|. +
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------~----~~~~pdgi~-~d~---~G~-l  252 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-------V----PDGLPDGFC-VDR---GGW-L  252 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-------C----SSSCCCSEE-ECT---TSC-E
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-------C----CCCCCCeEE-ECC---CCC-E
Confidence            111289999998777643321    268999998754411  11110       0    112233454 766   465 3


Q ss_pred             EEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                       .++..+ .|.+||..  ++.+..+..+. .+.+++|+|++..|
T Consensus       253 -wv~~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L  291 (305)
T 3dr2_A          253 -WSSSGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRL  291 (305)
T ss_dssp             -EECCSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEE
T ss_pred             -EEecCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEE
Confidence             333344 49999984  66777776554 68999999988643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=7.7e-09  Score=78.49  Aligned_cols=223  Identities=3%  Similarity=-0.098  Sum_probs=130.8

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      ..+...+.++++.++|.+.++...++.|.+||.. ++.. .+........+.++++.+  ++.++++...++.|..||..
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence            3455789999999999988877768899999988 5433 332211115589999999  88888877778889999976


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~  169 (270)
                       ++...   ............+............ .......++. .++...........    +++.++|. +++ +..
T Consensus        87 -g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~  159 (299)
T 2z2n_A           87 -GIIKE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF-TEN  159 (299)
T ss_dssp             -SCEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE-EET
T ss_pred             -CcEEE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE-EeC
Confidence             32211   1111111122223333222211111 1223334444 33332222221111    88899986 444 334


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee-ee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AM  248 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-~~  248 (270)
                      .++.|..||. +++... +...      ..    ...+..++ +.|   +|. ++++...++.|.+||. + ++... .+
T Consensus       160 ~~~~i~~~~~-~g~~~~-~~~~------~~----~~~~~~i~-~~~---~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~  220 (299)
T 2z2n_A          160 QNNAIGRITE-SGDITE-FKIP------TP----ASGPVGIT-KGN---DDA-LWFVEIIGNKIGRITT-S-GEITEFKI  220 (299)
T ss_dssp             TTTEEEEECT-TCCEEE-EECS------ST----TCCEEEEE-ECT---TSS-EEEEETTTTEEEEECT-T-CCEEEEEC
T ss_pred             CCCEEEEEcC-CCcEEE-eeCC------CC----CCcceeEE-ECC---CCC-EEEEccCCceEEEECC-C-CcEEEEEC
Confidence            4688999998 666443 2210      11    22355666 887   455 6666667889999998 5 44322 22


Q ss_pred             eccCCCeeEEEeecCCCce
Q 024245          249 KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       249 ~~~~~~v~~~~~s~~g~~l  267 (270)
                      ..+...+.+++++++|.+.
T Consensus       221 ~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEE
T ss_pred             CCCCCCceeEEECCCCCEE
Confidence            3344678999999998753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.31  E-value=2.7e-10  Score=88.88  Aligned_cols=230  Identities=7%  Similarity=-0.068  Sum_probs=136.3

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeCC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSI   74 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~   74 (270)
                      .+.++..-..+  .+.++||+++++.+.          .++.|.+||+.+++.+.++......     .....++++|  
T Consensus        58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--  133 (368)
T 1mda_H           58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--  133 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--
T ss_pred             EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--
Confidence            34444333344  799999999888875          4688999999999999998754100     1256899999  


Q ss_pred             CCCEEEEEeC--CCcEEE--EEccCCccCCC--CccceecccceE---------EEEeecc-------------------
Q 024245           75 GLNKVISQGR--DGTVKC--WDIENGGLSSN--PSLTIKTNSYHF---------CKLSLVK-------------------  120 (270)
Q Consensus        75 ~~~~l~s~~~--d~~i~~--wd~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~-------------------  120 (270)
                      +|++++.+..  +..+.+  +|..+-+.+..  +....+.....+         ..+....                   
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg  213 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence            9999998864  457888  88866111000  000000000000         0011100                   


Q ss_pred             -CC-----c--cceecCCCCceEEEeccCc-eeeecc--------------CCCCCeEecCCCCeEEEEec-C-C-----
Q 024245          121 -EP-----Y--ANAKQANEPKDCYEREVGE-TVDTDS--------------LCDSKDDVPAEGPKYMAVAG-E-Q-----  170 (270)
Q Consensus       121 -~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~s~~~~~~~~~~~-~-~-----  170 (270)
                       .+     .  ...... +....+|..... .+...+              .+...++++|++++++++.. . .     
T Consensus       214 ~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~  292 (368)
T 1mda_H          214 SQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             SCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             CCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence             00     0  000001 223333443221 111111              11112789999998887543 1 1     


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcCCCCcceeeee
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      ++.+.++|+.+++.+.++..             ......+. |+|+   |+.++++.. .++.|.++|+.+ .+.+.++.
T Consensus       293 ~~~~~ViD~~t~~vv~~i~v-------------g~~p~gi~-~s~D---g~~l~va~~~~~~~VsVID~~t-~kvv~~I~  354 (368)
T 1mda_H          293 AENTSSVTASVGQTSGPISN-------------GHDSDAII-AAQD---GASDNYANSAGTEVLDIYDAAS-DQDQSSVE  354 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEESSS-CEEEEECC
T ss_pred             CCCEEEEECCCCeEEEEEEC-------------CCCcceEE-ECCC---CCEEEEEccCCCCeEEEEECCC-CcEEEEEE
Confidence            23466999999999888873             22467777 9984   543667776 699999999999 88888888


Q ss_pred             ccCCCeeEEEeecC
Q 024245          250 VHLEPGLECSMWRN  263 (270)
Q Consensus       250 ~~~~~v~~~~~s~~  263 (270)
                      .. .....+++.+.
T Consensus       355 vg-~~P~~i~~~~~  367 (368)
T 1mda_H          355 LD-KGPESLSVQNE  367 (368)
T ss_dssp             CC-SCCCEEECCCC
T ss_pred             CC-CCCCEEEeecC
Confidence            54 45667777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.31  E-value=3.4e-12  Score=100.38  Aligned_cols=205  Identities=14%  Similarity=0.073  Sum_probs=105.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        29 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      ++..+++++.||.|+.||..+|+.+..+.. .   .+.+..+..  ++..+++++.|+.|..||..+++....  .....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccC
Confidence            567899999999999999999999988876 2   244544555  666788888999999999988865431  11110


Q ss_pred             ccceEEEEeecc--CCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245          109 NSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (270)
Q Consensus       109 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  186 (270)
                      ....  ..++..  ..........+....+|..+++.+- .+..+....++|++..+++  ++.|+.|+.||.++++.+.
T Consensus        80 ~~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~~~~~~p~~~~v~~--~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           80 PELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ-TLSSAFADSLSPSTSLLYL--GRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             HHHH--TTCSCC-----CCCCEEEEEEEEECCC-----------------------EEE--EEEEEEEECCCSSSSSCCC
T ss_pred             cccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEE-EecCCCcccccccCCEEEE--EecCCEEEEEECCCCCEEE
Confidence            0000  000000  0000011112223445666555432 2222223456677765554  4558999999999999877


Q ss_pred             eeccCcCCCCCCcccCCCceeeeeeecCCCC-CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCee-EEEeecCC
Q 024245          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL-ECSMWRNP  264 (270)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~s~~g  264 (270)
                      .+..        +      ...... +.++. .++  .+++++.||.|+.||.++ ++.+..+.. ..++. ...++++|
T Consensus       155 ~~~~--------~------~~~~~~-~~~~~~~~~--~v~~~~~dg~v~a~d~~t-G~~~W~~~~-~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          155 NATY--------F------DYAASL-PEDDVDYKM--SHFVSNGDGLVVTVDSES-GDVLWIQNY-ASPVVAFYVWQREG  215 (369)
T ss_dssp             EEEE--------E------EECCBC-CCCCTTCCC--CEEEEETSCEEEEECTTT-CCEEEEEEC-SSCEEEEEECTTSS
T ss_pred             eEec--------c------cccCcc-ccCCccccc--eEEEECCCCEEEEEECCC-CcEEEEecC-CCceEEEEEecCCc
Confidence            7652        1      011122 33210 013  577788999999999998 787777764 34444 35566677


Q ss_pred             C
Q 024245          265 I  265 (270)
Q Consensus       265 ~  265 (270)
                      .
T Consensus       216 ~  216 (369)
T 2hz6_A          216 L  216 (369)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=1.2e-09  Score=79.97  Aligned_cols=190  Identities=9%  Similarity=0.066  Sum_probs=123.8

Q ss_pred             cccccccccc--cEEEEEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeC
Q 024245           10 PVAVLRGHRA--SVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGR   84 (270)
Q Consensus        10 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~   84 (270)
                      .++++ .|..  -...+.|+ ++.+..+.+.+|  .|+++|+++++.+..+....   ........+  .++.|.. .-.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~--~g~~ly~ltw~  105 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISD--WKDKIVGLTWK  105 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEE--ETTEEEEEESS
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEE--eCCEEEEEEee
Confidence            34455 3543  35899998 677777777766  89999999999998887543   244443444  3355554 446


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  164 (270)
                      ++.+.+||..+.+...    +++.....                                         ..++++++.++
T Consensus       106 ~~~v~v~D~~t~~~~~----ti~~~~eG-----------------------------------------~glt~dg~~L~  140 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVR----SFNYDGEG-----------------------------------------WGLTHNDQYLI  140 (262)
T ss_dssp             SSEEEEEETTTCCEEE----EEECSSCC-----------------------------------------CCEEECSSCEE
T ss_pred             CCEEEEEECccCcEEE----EEECCCCc-----------------------------------------eEEecCCCEEE
Confidence            8899999999887543    33221100                                         22556777777


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ++.|  ++.|.++|..+.+.+.++..       +-.......+..+. |.    +|+ ..+..-.++.|.+.|.++ ++.
T Consensus       141 ~SdG--s~~i~~iDp~T~~v~~~I~V-------~~~g~~~~~lNELe-~~----~G~-lyan~w~~~~I~vIDp~t-G~V  204 (262)
T 3nol_A          141 MSDG--TPVLRFLDPESLTPVRTITV-------TAHGEELPELNELE-WV----DGE-IFANVWQTNKIVRIDPET-GKV  204 (262)
T ss_dssp             ECCS--SSEEEEECTTTCSEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTSSEEEEECTTT-CBE
T ss_pred             EECC--CCeEEEEcCCCCeEEEEEEe-------ccCCccccccceeE-EE----CCE-EEEEEccCCeEEEEECCC-CcE
Confidence            6443  57899999999998888773       11000112223344 54    565 556666788999999999 887


Q ss_pred             eeeeecc------------CCCeeEEEeecCCCce
Q 024245          245 LTAMKVH------------LEPGLECSMWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~------------~~~v~~~~~s~~g~~l  267 (270)
                      +..+...            ....+.|||+|++..|
T Consensus       205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             EEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            7777642            1355889999987653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.26  E-value=9e-09  Score=81.97  Aligned_cols=230  Identities=11%  Similarity=-0.009  Sum_probs=132.5

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCC
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~   96 (270)
                      .....|+|+++++++++...++.|++||..++.........   .... ++|++  +++.|+++..++  .|.+|+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCC
Confidence            46889999999998888888899999999877666554432   2234 99999  889998888766  7888887765


Q ss_pred             ccCCCCccceec-ccceEEEEeeccCCccceecC-CCCceEEEeccCceeee----c--cCCCC---CeEecCCCCeEEE
Q 024245           97 GLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDT----D--SLCDS---KDDVPAEGPKYMA  165 (270)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~~~~---~~~~s~~~~~~~~  165 (270)
                      ..... +..... .......+.+.......+... .+.+..++.........    .  ..+..   .++|+|++..+++
T Consensus       205 ~~~~~-~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          205 WAPTR-IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TCEEE-EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             ceeEE-eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            42110 000000 111111122222111111211 22234455544432211    1  11222   4899997667776


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCccc-----CCCceeeeeeecCCCCCCCceEEEEec-CCCcEEEEEcC
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIR  239 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~~~-~dg~i~vwd~~  239 (270)
                      + ...++.|+.|+... + +..+....  ...+...     ........++ ++|   +|+ ++++-. .++.|+.||+.
T Consensus       284 ~-d~~~~~I~~~~~~g-~-~~~~~g~~--~~~g~~dg~~~~~~~~~P~gia-~d~---dG~-lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          284 S-DQNLSSVYKITPDG-E-CEWFCGSA--TQKTVQDGLREEALFAQPNGMT-VDE---DGN-FYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             E-ETTTTEEEEECTTC-C-EEEEEECT--TCCSCBCEEGGGCBCSSEEEEE-ECT---TCC-EEEEETTTTCEEEEEETT
T ss_pred             E-eCCCCEEEEEecCC-C-EEEEEeCC--CCCCcCCCcccccEeCCCeEEE-EeC---CCC-EEEEeCCCCCEEEEEECC
Confidence            4 44578999999763 3 22332100  0001100     0012356676 888   465 777777 88999999987


Q ss_pred             CCCcceeeeecc---------------CCCeeEEEeecCCCce
Q 024245          240 NPGIPLTAMKVH---------------LEPGLECSMWRNPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l  267 (270)
                      + +. +..+.++               -..+..|+++++|.++
T Consensus       354 ~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ly  394 (409)
T 3hrp_A          354 D-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYW  394 (409)
T ss_dssp             T-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEE
T ss_pred             C-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEE
Confidence            6 44 4444443               2458899999988653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.23  E-value=4.1e-08  Score=74.46  Aligned_cols=220  Identities=7%  Similarity=-0.032  Sum_probs=128.4

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      +...+.++++.++|.+.++...++.|..||.. ++. ..+........+.++++.+  ++.++++...++.|..||. ++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CC
Confidence            34678999999999988887778889999986 332 3333211114589999999  8888887777889999998 44


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      +...   ............+............. ......++. +++...........    +++.++|. ++++ ...+
T Consensus       130 ~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~-~~~~  203 (299)
T 2z2n_A          130 KIRE---YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFV-EIIG  203 (299)
T ss_dssp             CEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEE-ETTT
T ss_pred             CEEE---ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEE-ccCC
Confidence            3321   11111112222333332222111111 223344554 33332221222111    88899987 4443 3346


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee-eec
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKV  250 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~  250 (270)
                      +.|.+||. +++... +...      .    ....+..+. +.|   +|+ ++++...++.|..||. + ++.... +..
T Consensus       204 ~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~~~---~g~-l~v~~~~~~~i~~~d~-~-g~~~~~~~~~  264 (299)
T 2z2n_A          204 NKIGRITT-SGEITE-FKIP------T----PNARPHAIT-AGA---GID-LWFTEWGANKIGRLTS-N-NIIEEYPIQI  264 (299)
T ss_dssp             TEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECS---TTC-EEEEETTTTEEEEEET-T-TEEEEEECSS
T ss_pred             ceEEEECC-CCcEEE-EECC------C----CCCCceeEE-ECC---CCC-EEEeccCCceEEEECC-C-CceEEEeCCC
Confidence            88999999 666432 3210      1    123466776 887   455 6666667889999998 3 432221 234


Q ss_pred             cCCCeeEEEeecCCCce
Q 024245          251 HLEPGLECSMWRNPITM  267 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~~l  267 (270)
                      +...+.++++ ++|.+.
T Consensus       265 ~~~~~~~i~~-~~g~l~  280 (299)
T 2z2n_A          265 KSAEPHGICF-DGETIW  280 (299)
T ss_dssp             SSCCEEEEEE-CSSCEE
T ss_pred             CCCccceEEe-cCCCEE
Confidence            4567899999 887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=1.2e-09  Score=92.93  Aligned_cols=226  Identities=8%  Similarity=0.007  Sum_probs=123.9

Q ss_pred             cccccEEEEEEeCCCCEEEE-----ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC----
Q 024245           16 GHRASVTDVCFHQTKPILFA-----GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----   86 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~----   86 (270)
                      +|...+..++|||||++||-     |+....|++||+.+++.+... ...  .....++|+   |++.|+.++.+.    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--VKFSGISWL---GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--EESCCCEEE---TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--ceeccEEEe---CCCEEEEEEecCcccc
Confidence            46667899999999998883     444568999999999865431 111  112467787   346677666653    


Q ss_pred             ---------cEEEEEccCCccCCCCccceec-ccceEEE--EeeccCCccceecCC---CCceEEEeccCceeeeccCCC
Q 024245           87 ---------TVKCWDIENGGLSSNPSLTIKT-NSYHFCK--LSLVKEPYANAKQAN---EPKDCYEREVGETVDTDSLCD  151 (270)
Q Consensus        87 ---------~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  151 (270)
                               .|.+|++.++......++.... +......  ++.++.........+   +...++++..+......+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     4999999876532212222222 2221222  222222111111222   123345555443222222222


Q ss_pred             CC---eEecCCCCeEEEEecCC--CceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEE
Q 024245          152 SK---DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (270)
Q Consensus       152 ~~---~~~s~~~~~~~~~~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (270)
                      ..   ..++++|..+++.+...  .+.|.++|+.++..  ...+.        .|..    .+.  . |+|+   ++.++
T Consensus       280 ~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~----~~~--~-~s~~---g~~lv  341 (693)
T 3iuj_A          280 LDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--------PERQ----QVL--T-VHSG---SGYLF  341 (693)
T ss_dssp             SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS----SCE--E-EEEE---TTEEE
T ss_pred             CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--------cCCC----CEE--E-EEEE---CCEEE
Confidence            22   33788888888765432  36899999987654  33444        2322    122  4 7774   44244


Q ss_pred             EEecCCC--cEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245          225 LAGYEDG--SILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM  267 (270)
Q Consensus       225 ~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  267 (270)
                      ++...++  .|++||+.. + ....+.. ....+..+.+++++..|
T Consensus       342 ~~~~~~g~~~l~~~d~~g-~-~~~~l~~p~~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          342 AEYMVDATARVEQFDYEG-K-RVREVALPGLGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             EEEEETTEEEEEEECTTS-C-EEEEECCSSSSEEEECCCCTTCSCE
T ss_pred             EEEEECCeeEEEEEECCC-C-eeEEeecCCCceEEeeecCCCCCEE
Confidence            5555555  688898874 3 3344432 33456777788777654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.21  E-value=4.9e-09  Score=81.49  Aligned_cols=192  Identities=10%  Similarity=-0.035  Sum_probs=109.6

Q ss_pred             EEEEEEeCCCCEEEEecCC---------------------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeC
Q 024245           21 VTDVCFHQTKPILFAGTTG---------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (270)
                      +..++|+|+|+.|+.++.+                           ..|.+||+.+++.+..+.. .   .+..+.|+| 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~sp-  180 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHR-  180 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEET-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCC-
Confidence            8999999999988887632                           5799999998877455544 2   378999999 


Q ss_pred             CCCCEEEEEeCCC-------cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-----CCceEEEeccC
Q 024245           74 IGLNKVISQGRDG-------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVG  141 (270)
Q Consensus        74 ~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  141 (270)
                       +| +++++..++       ...+|.+.+++..     .+... ......+..+..........     ....+|.+..+
T Consensus       181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-----~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~  252 (347)
T 2gop_A          181 -DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-----KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGK  252 (347)
T ss_dssp             -TE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-----EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSS
T ss_pred             -Ce-EEEEEecccccccccccccEEEeCCCceE-----EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEECCC
Confidence             98 777776542       4566655544321     12111 22222233222221111111     12334444322


Q ss_pred             ceeeeccCCCCC-----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245          142 ETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (270)
Q Consensus       142 ~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (270)
                       ........+..     +.|+ ++  +++ +++.++.++|| +.+++....+.         +    ...+.++. |+| 
T Consensus       253 -~~~~l~~~~~~~~~~~~~~s-dg--~~~-~~~~~~~~~l~-~~~g~~~~~~~---------~----~~~v~~~~-~s~-  311 (347)
T 2gop_A          253 -EVMGILDEVDRGVGQAKIKD-GK--VYF-TLFEEGSVNLY-IWDGEIKPIAK---------G----RHWIMGFD-VDE-  311 (347)
T ss_dssp             -CEEESSTTCCSEEEEEEEET-TE--EEE-EEEETTEEEEE-EESSSEEEEEC---------S----SSEEEEEE-ESS-
T ss_pred             -ceEeccccCCcccCCccEEc-Cc--EEE-EEecCCcEEEE-EcCCceEEEec---------C----CCeEEeee-eeC-
Confidence             23333333332     5677 76  444 45568899999 87655433332         1    34567777 887 


Q ss_pred             CCCCceEEEEecCCCcE-EEEEcCCCCcceeeeeccCCC
Q 024245          217 KSQGFVNVLAGYEDGSI-LVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       217 ~~~g~~~l~~~~~dg~i-~vwd~~~~~~~~~~~~~~~~~  254 (270)
                       .    ++++++.++.. .+|.+.  ++ ...+..|...
T Consensus       312 -~----~~~~~~~~~~~~~l~~~~--g~-~~~lt~~n~~  342 (347)
T 2gop_A          312 -I----VVYLKETATRLRELFTWD--GE-EKQLTDYNDP  342 (347)
T ss_dssp             -S----EEEEEECSSSCCEEEEES--SS-EEECCCTTST
T ss_pred             -c----EEEEEcCCCChHHheEeC--Cc-EEEeccccHh
Confidence             2    77777777664 777765  33 4455555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.19  E-value=3.2e-09  Score=79.52  Aligned_cols=193  Identities=7%  Similarity=-0.101  Sum_probs=114.1

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      ..+.+++++++|+++++.. ++.|.+||....... .+..... ..+.++++.+  +++++++...++.|.+|+..+...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~-~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGL-NYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSC-SSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCc-CCCcceEECC--CCCEEEEECCCCEEEEEECCCcee
Confidence            5678899999998776666 889999998755433 3322211 4589999999  888777777788999997654432


Q ss_pred             CCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCce
Q 024245           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~  173 (270)
                      ..    ...........+.+..... .....  ......++................   +++.++| .++++ ...++.
T Consensus       142 ~~----~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~-~~~~~~  214 (270)
T 1rwi_B          142 TV----LPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVT-EHNTNQ  214 (270)
T ss_dssp             EE----CCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEE-ETTTSC
T ss_pred             Ee----eccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEE-ECCCCc
Confidence            11    0111101111222222221 11111  233444554444333222222122   8999999 45553 444688


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      |.+||........ +..       .+    ...+..++ +.|   +|+ ++++...++.|+++++..
T Consensus       215 v~~~~~~~~~~~~-~~~-------~~----~~~p~~i~-~~~---~g~-l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-LPF-------TG----LNTPLAVA-VDS---DRT-VYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEECTTCSCCEE-CCC-------CS----CSCEEEEE-ECT---TCC-EEEEEGGGTEEEEECCCG
T ss_pred             EEEEcCCCCccee-ecc-------CC----CCCceeEE-ECC---CCC-EEEEECCCCEEEEEcCCC
Confidence            9999987544322 221       11    13466776 887   455 888888999999999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=5e-09  Score=82.61  Aligned_cols=216  Identities=10%  Similarity=0.032  Sum_probs=126.9

Q ss_pred             CCCCCcccccc------c-ccccEEEEEEeCCCCEEEEecCC------CcEEEEeCCCCceeEEEeecCCC-cceEEEEE
Q 024245            5 PPPPDPVAVLR------G-HRASVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAA-HGIVSVAT   70 (270)
Q Consensus         5 ~~~~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~   70 (270)
                      |..|+.+++++      . -...-..+..+|+| +++++..+      |.|.+.|.++.+.+..+...... .--+.+.|
T Consensus       117 p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~  195 (462)
T 2ece_A          117 PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWW  195 (462)
T ss_dssp             TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEE
T ss_pred             CCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEE
Confidence            44456666663      0 11234567788999 77776555      78999999999999888643221 22345888


Q ss_pred             eeCCCCCEEEEEe-------------------CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCC
Q 024245           71 GPSIGLNKVISQG-------------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE  131 (270)
Q Consensus        71 ~~~~~~~~l~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (270)
                      +|  +++.+++..                   .+.+|.+||+.+++...    ++...........+.            
T Consensus       196 ~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~----tI~vg~~g~~P~~i~------------  257 (462)
T 2ece_A          196 NL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH----SLTLGEENRMALELR------------  257 (462)
T ss_dssp             ET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE----EEESCTTEEEEEEEE------------
T ss_pred             CC--CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee----EEecCCCCCccceeE------------
Confidence            99  888888874                   36899999998865432    222211111111100            


Q ss_pred             CceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC-----CCceEEEEeCCCcce--eeeeccCcCCCCCCcc----
Q 024245          132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFS----  200 (270)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~----  200 (270)
                                            ++|+|++++.+++ +.     .+++|.+|....++.  .+.+...... ..+..    
T Consensus       258 ----------------------f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~-v~~~lp~~~  313 (462)
T 2ece_A          258 ----------------------PLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP-LEGNLPEIL  313 (462)
T ss_dssp             ----------------------ECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE-CCSSCCGGG
T ss_pred             ----------------------eeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCcc-ccccccccc
Confidence                                  2358999988764 44     567888876654431  1111100000 00000    


Q ss_pred             ---cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC--cceeeeeccC--------------CCeeEEEee
Q 024245          201 ---SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHL--------------EPGLECSMW  261 (270)
Q Consensus       201 ---~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~--------------~~v~~~~~s  261 (270)
                         .........+. ++|   ||+++.++.-..+.|.+||+..++  +.+..+.-..              .....++++
T Consensus       314 ~~f~~~~~~pa~I~-lS~---DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS  389 (462)
T 2ece_A          314 KPFKAVPPLVTDID-ISL---DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS  389 (462)
T ss_dssp             GGGTEECCCCCCEE-ECT---TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred             cccccCCCceeEEE-ECC---CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence               00012455666 888   566566666678899999997533  3333333210              136889999


Q ss_pred             cCCCce
Q 024245          262 RNPITM  267 (270)
Q Consensus       262 ~~g~~l  267 (270)
                      |||++|
T Consensus       390 pDGk~L  395 (462)
T 2ece_A          390 RDGRRV  395 (462)
T ss_dssp             TTSSEE
T ss_pred             CCCCEE
Confidence            999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.3e-07  Score=71.72  Aligned_cols=220  Identities=7%  Similarity=-0.036  Sum_probs=129.0

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ....+.++++.++|.+.++...++.|.+||.. ++... +........+.++++.+  +++++++...++.|..||.. +
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence            45678999999999988887778999999988 55443 32222114589999998  88877777778889999987 4


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      +...   ............+............. ......++.. ++...........    +++.++|. +++ +...+
T Consensus        93 ~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~~~~  166 (300)
T 2qc5_A           93 GFTE---YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF-TENQN  166 (300)
T ss_dssp             CEEE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE-EETTT
T ss_pred             CeEE---ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE-EecCC
Confidence            4321   11111112222333332222111111 2233334444 3332222221111    88889997 444 33346


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee-eec
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKV  250 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~  250 (270)
                      +.|..||. +++... +..+      .    .......+. +.+   +|. ++++....+.|.+||. + ++.... +..
T Consensus       167 ~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~d~---~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~  227 (300)
T 2qc5_A          167 NSIGRITN-TGKLEE-YPLP------T----NAAAPVGIT-SGN---DGA-LWFVEIMGNKIGRITT-T-GEISEYDIPT  227 (300)
T ss_dssp             TEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECT---TSS-EEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred             CeEEEECC-CCcEEE-eeCC------C----CCCCcceEE-ECC---CCC-EEEEccCCCEEEEEcC-C-CcEEEEECCC
Confidence            78999998 555443 3210      1    122456666 877   455 6666666778999998 3 443222 333


Q ss_pred             cCCCeeEEEeecCCCc
Q 024245          251 HLEPGLECSMWRNPIT  266 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~~  266 (270)
                      ....+.+++++++|.+
T Consensus       228 ~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          228 PNARPHAITAGKNSEI  243 (300)
T ss_dssp             TTCCEEEEEECSTTCE
T ss_pred             CCCCceEEEECCCCCE
Confidence            4567889999998864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.15  E-value=2.3e-08  Score=85.43  Aligned_cols=197  Identities=8%  Similarity=-0.083  Sum_probs=113.3

Q ss_pred             EEEEEEeCCCCEEEEecCCCc----------------EEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245           21 VTDVCFHQTKPILFAGTTGGE----------------LRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~----------------i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      +..++|+|||+.|+.++.++.                |++|++.+++..  ..+........+..+.|+|  +|++|+..
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLS  250 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEE
Confidence            567999999999998887766                999999887532  2333322224478999999  99998866


Q ss_pred             eC-----CCcEEEEEccC------CccCCCCccceeccc-ceEEEEeeccCCccceecCC---CCceEEEeccCce--ee
Q 024245           83 GR-----DGTVKCWDIEN------GGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQAN---EPKDCYEREVGET--VD  145 (270)
Q Consensus        83 ~~-----d~~i~~wd~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~  145 (270)
                      +.     +..|.+||+.+      +..   ....+.... .....++............+   .....+++..+..  ..
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~  327 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK  327 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred             EEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence            54     56899999986      421   011222211 11122333222222111111   1233456555421  12


Q ss_pred             eccCCCC--C---eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          146 TDSLCDS--K---DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       146 ~~~~~~~--~---~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                      .......  .   ++|++++ .+++ +...|+  .|.+||+.+++.+..+.        .+    .+.+..+. ++|+  
T Consensus       328 ~l~~~~~~~~~~~~~~~~~~-~lv~-~~~~~g~~~l~~~~~~~g~~~~~l~--------~~----~~~v~~~~-~s~d--  390 (710)
T 2xdw_A          328 VLVPEHEKDVLEWVACVRSN-FLVL-CYLHDVKNTLQLHDLATGALLKIFP--------LE----VGSVVGYS-GQKK--  390 (710)
T ss_dssp             EEECCCSSCEEEEEEEETTT-EEEE-EEEETTEEEEEEEETTTCCEEEEEC--------CC----SSEEEEEE-CCTT--
T ss_pred             eccCCCCCCeEEEEEEEcCC-EEEE-EEEECCEEEEEEEECCCCCEEEecC--------CC----CceEEEEe-cCCC--
Confidence            2222222  1   6677554 5554 444566  46677877787777776        23    34566676 8884  


Q ss_pred             CCceEEEEec---CCCcEEEEEcCC
Q 024245          219 QGFVNVLAGY---EDGSILVWDIRN  240 (270)
Q Consensus       219 ~g~~~l~~~~---~dg~i~vwd~~~  240 (270)
                       +..++++.+   ..+.|++||+.+
T Consensus       391 -~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          391 -DTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             -CSEEEEEEECSSCCCEEEEEETTS
T ss_pred             -CCEEEEEEeCCCCCCEEEEEECCC
Confidence             332343333   457899999987

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=1.2e-08  Score=74.70  Aligned_cols=189  Identities=11%  Similarity=0.031  Sum_probs=123.3

Q ss_pred             Cccccccccc--ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEE--EEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVLRGHR--ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS--VATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~s~~~   84 (270)
                      +.++++ .|.  .-...+.|+. +.+..+.+.+|.|+++|+++++.+..+ ...   ....  +++..  + ...+..-.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---~~FgeGit~~g--~-~Ly~ltw~  114 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG---NIFAEGLASDG--E-RLYQLTWT  114 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT---TCCEEEEEECS--S-CEEEEESS
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---CcceeEEEEeC--C-EEEEEEcc
Confidence            344555 343  3457899984 667788888899999999999988887 432   2344  44433  2 44445557


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  164 (270)
                      ++.+.+||..+.+.+.    +++.....                                         ..++++++.++
T Consensus       115 ~~~v~V~D~~Tl~~~~----ti~~~~eG-----------------------------------------wGLt~Dg~~L~  149 (268)
T 3nok_A          115 EGLLFTWSGMPPQRER----TTRYSGEG-----------------------------------------WGLCYWNGKLV  149 (268)
T ss_dssp             SCEEEEEETTTTEEEE----EEECSSCC-----------------------------------------CCEEEETTEEE
T ss_pred             CCEEEEEECCcCcEEE----EEeCCCce-----------------------------------------eEEecCCCEEE
Confidence            8899999999887544    33221100                                         12556778887


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ++.|  ++.|.++|..+.+.+.++...       -....-.....+. |.    +|+ +.+..-.+..|.+.|.++ ++.
T Consensus       150 vSdG--s~~l~~iDp~T~~v~~~I~V~-------~~g~~v~~lNeLe-~~----dG~-lyanvw~s~~I~vIDp~T-G~V  213 (268)
T 3nok_A          150 RSDG--GTMLTFHEPDGFALVGAVQVK-------LRGQPVELINELE-CA----NGV-IYANIWHSSDVLEIDPAT-GTV  213 (268)
T ss_dssp             EECS--SSEEEEECTTTCCEEEEEECE-------ETTEECCCEEEEE-EE----TTE-EEEEETTCSEEEEECTTT-CBE
T ss_pred             EECC--CCEEEEEcCCCCeEEEEEEeC-------CCCcccccccccE-Ee----CCE-EEEEECCCCeEEEEeCCC-CcE
Confidence            7543  689999999999988887731       1010111234444 54    565 556666788999999999 887


Q ss_pred             eeeeecc-------------CCCeeEEEeecCCCce
Q 024245          245 LTAMKVH-------------LEPGLECSMWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~-------------~~~v~~~~~s~~g~~l  267 (270)
                      +..+...             .+..+.|||+|++..|
T Consensus       214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             EEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence            7776532             1356889999976543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.14  E-value=1.6e-08  Score=76.89  Aligned_cols=198  Identities=12%  Similarity=0.033  Sum_probs=111.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC--CcceEEEEEeeCCCCCEEEEEeC----
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGLNKVISQGR----   84 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~----   84 (270)
                      ...+..+...+.+++++++|+++++...++.|.+||..+++..........  ...+..++++|  +|+++++.+.    
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGID  138 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHH
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccc
Confidence            445556777899999999999888887778999999987775543322111  12467899999  9888887321    


Q ss_pred             -------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEec-cCce-e-eec
Q 024245           85 -------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYERE-VGET-V-DTD  147 (270)
Q Consensus        85 -------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~-~~~  147 (270)
                                   .+.|..++.. ++..     .+.........+.+....... ..........|++. .+.. . ...
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~  212 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPD-GTLS-----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH  212 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTT-SCEE-----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred             cccccccccccCCCcEEEEECCC-CCEE-----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence                         2344444443 3211     111221122222332222222 11222344556665 2322 0 111


Q ss_pred             cCCCC----CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeec-CCCCCCCce
Q 024245          148 SLCDS----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY-LPSKSQGFV  222 (270)
Q Consensus       148 ~~~~~----~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~p~~~~g~~  222 (270)
                      +..+.    .++++++|. +++++   ++.|.+||.. ++.+..+..        +    .. +.+++ | .|   +++ 
T Consensus       213 ~~~~~~~p~~i~~d~~G~-l~v~~---~~~v~~~~~~-g~~~~~~~~--------~----~~-~~~~~-f~~~---d~~-  269 (296)
T 3e5z_A          213 FTVEPGKTDGLRVDAGGL-IWASA---GDGVHVLTPD-GDELGRVLT--------P----QT-TSNLC-FGGP---EGR-  269 (296)
T ss_dssp             ECCSSSCCCSEEEBTTSC-EEEEE---TTEEEEECTT-SCEEEEEEC--------S----SC-CCEEE-EEST---TSC-
T ss_pred             eeCCCCCCCeEEECCCCC-EEEEc---CCeEEEECCC-CCEEEEEEC--------C----CC-ceeEE-EECC---CCC-
Confidence            11111    299999997 44433   5889999987 777777762        2    22 56666 8 45   455 


Q ss_pred             EEEEecCCCcEEEEEcCC
Q 024245          223 NVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~  240 (270)
                      .|++++.+ .+.-++..+
T Consensus       270 ~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          270 TLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             EEEEEETT-EEEEEECSC
T ss_pred             EEEEEcCC-eEEEEEccc
Confidence            66666665 344445554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.13  E-value=2.9e-08  Score=74.68  Aligned_cols=225  Identities=12%  Similarity=0.045  Sum_probs=129.3

Q ss_pred             Cccccccccc-ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC
Q 024245            9 DPVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG   86 (270)
Q Consensus         9 ~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~   86 (270)
                      +.+.++..+. ..+.++.++|+|+++++  .++.|..||. +++.+..+..... ..+.++.+.+  +|+.+++.+. ++
T Consensus        26 ~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~--dG~~lv~~~~~~~   99 (276)
T 3no2_A           26 EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG-CEMQTARILP--DGNALVAWCGHPS   99 (276)
T ss_dssp             EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECT--TSCEEEEEESTTE
T ss_pred             eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC-ccccccEECC--CCCEEEEecCCCC
Confidence            4455565554 46889999999998884  4678999999 7999988876432 3588899999  9999998877 77


Q ss_pred             cEEEEEccCCccCCCCccceecc----cceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccC-CCCC-eEecCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSL-CDSK-DDVPAE  159 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~  159 (270)
                      .|..+|. +++.+.  .+.+...    ................. ....+....++.. ++.+-.... .... +.+.++
T Consensus       100 ~v~~vd~-~Gk~l~--~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~  175 (276)
T 3no2_A          100 TILEVNM-KGEVLS--KTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDN  175 (276)
T ss_dssp             EEEEECT-TSCEEE--EEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTT
T ss_pred             EEEEEeC-CCCEEE--EEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCC
Confidence            7777775 444322  0111000    00000011111111111 1122334445554 443322211 1222 677888


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC--CCceeeeeeecCCCCCCCceEEEEec--CC-----
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--GRGMCMAVQAYLPSKSQGFVNVLAGY--ED-----  230 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~--~~~~~~~~~~~~p~~~~g~~~l~~~~--~d-----  230 (270)
                      |..++  ++..++.|..+|..+++.+.++..        ...+  ....+..+. ..+   +|. ++++..  ..     
T Consensus       176 g~~~v--~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~l~~~~~~~-~~~---~G~-i~v~~~~g~~~~~~~  240 (276)
T 3no2_A          176 GDCLV--ACGDAHCFVQLNLESNRIVRRVNA--------NDIEGVQLFFVAQLF-PLQ---NGG-LYICNWQGHDREAGK  240 (276)
T ss_dssp             SCEEE--ECBTTSEEEEECTTTCCEEEEEEG--------GGSBSCCCSEEEEEE-ECT---TSC-EEEEEECTTCTTGGG
T ss_pred             CCEEE--EeCCCCeEEEEeCcCCcEEEEecC--------CCCCCccccccccce-EcC---CCC-EEEEeccCccccccc
Confidence            87554  344567899999999999988862        1111  122344454 555   465 555552  11     


Q ss_pred             -CcEEEEEcCCCCcceeeeeccC--CCeeEE
Q 024245          231 -GSILVWDIRNPGIPLTAMKVHL--EPGLEC  258 (270)
Q Consensus       231 -g~i~vwd~~~~~~~~~~~~~~~--~~v~~~  258 (270)
                       +..+++.+...++.+..+....  +.+.++
T Consensus       241 ~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~  271 (276)
T 3no2_A          241 GKHPQLVEIDSEGKVVWQLNDKVKFGMISTI  271 (276)
T ss_dssp             SCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred             cCCceEEEECCCCCEEEEecCcccccceeee
Confidence             2446777744478888876543  345554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=2.4e-07  Score=70.24  Aligned_cols=219  Identities=8%  Similarity=-0.055  Sum_probs=127.4

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ...+.++++.++|.+.++...++.|..+|.. ++.. .+........+.++++.+  +++++++...++.|..||.. ++
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CC
Confidence            4678999999999988877778889999987 5543 333221114589999998  88888877778889999887 44


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCC
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d  171 (270)
                      ...   ............+....... .....  ......++. .++...........    +++.++|. ++++ ....
T Consensus       136 ~~~---~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~-~~~~  208 (300)
T 2qc5_A          136 IYE---YDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFV-EIMG  208 (300)
T ss_dssp             EEE---EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEE-ETTT
T ss_pred             EEE---ccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEE-ccCC
Confidence            321   11111112222233332222 22222  222333444 33322222222211    88889885 4443 3345


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce-eeeec
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV  250 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~  250 (270)
                      +.|.+||. +++.......       .    ....+..++ +.|   +|+ ++++...++.|..||..  ++.. ..+..
T Consensus       209 ~~i~~~~~-~g~~~~~~~~-------~----~~~~~~~i~-~d~---~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~  269 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDIP-------T----PNARPHAIT-AGK---NSE-IWFTEWGANQIGRITND--NTIQEYQLQT  269 (300)
T ss_dssp             TEEEEECT-TCCEEEEECS-------S----TTCCEEEEE-ECS---TTC-EEEEETTTTEEEEECTT--SCEEEEECCS
T ss_pred             CEEEEEcC-CCcEEEEECC-------C----CCCCceEEE-ECC---CCC-EEEeccCCCeEEEECCC--CcEEEEECCc
Confidence            78999998 4554332110       1    123456676 887   455 66666667899999983  3322 22333


Q ss_pred             cCCCeeEEEeecCCCce
Q 024245          251 HLEPGLECSMWRNPITM  267 (270)
Q Consensus       251 ~~~~v~~~~~s~~g~~l  267 (270)
                      ....+.+++++++|.+.
T Consensus       270 ~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          270 ENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             TTCCCCCEEECTTSCEE
T ss_pred             cCCccceeEeCCCCCEE
Confidence            34568899999988653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.12  E-value=6.6e-09  Score=88.54  Aligned_cols=192  Identities=6%  Similarity=-0.117  Sum_probs=107.0

Q ss_pred             EEEEEeCCCCEEEEecCCCc-------------EEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGE-------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      ..++|+|||+.|+.++.|..             |++|++.++..  ...+....+...+..+.|+|  +|++|+..+.++
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~  248 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRG  248 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEET
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCC
Confidence            67999999999999988776             99999988762  23333322224588999999  999988777665


Q ss_pred             ----cEEEEEccCCccCCCCccceeccc-ceEEEEeeccCCccceecC----CCCceEEEeccCce--eeeccCCC-CC-
Q 024245           87 ----TVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQA----NEPKDCYEREVGET--VDTDSLCD-SK-  153 (270)
Q Consensus        87 ----~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~-~~-  153 (270)
                          .|.+|+..+++..     .+.... ...........  ......    ......+++..+..  .......+ .. 
T Consensus       249 ~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~~~~~~g~--l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  321 (695)
T 2bkl_A          249 WSENDVYWKRPGEKDFR-----LLVKGVGAKYEVHAWKDR--FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS  321 (695)
T ss_dssp             TTEEEEEEECTTCSSCE-----EEEECSSCCEEEEEETTE--EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred             CCceEEEEEcCCCCceE-----EeecCCCceEEEEecCCc--EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence                5666655444321     121111 11111111221  111111    12233455544431  12222222 22 


Q ss_pred             ---eEecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe--
Q 024245          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--  227 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~--  227 (270)
                         ++++  +..+++ +...|+..+||.+. +++....+..        +   ..+.+..+. ++|+   +..++++.  
T Consensus       322 l~~~~~~--~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~--------~---~~~~v~~~~-~s~d---~~~l~~~~ss  383 (695)
T 2bkl_A          322 LLSVSIV--GGHLSL-EYLKDATSEVRVATLKGKPVRTVQL--------P---GVGAASNLM-GLED---LDDAYYVFTS  383 (695)
T ss_dssp             EEEEEEE--TTEEEE-EEEETTEEEEEEEETTCCEEEECCC--------S---SSSEECCCB-SCTT---CSEEEEEEEE
T ss_pred             EEEEEEE--CCEEEE-EEEECCEEEEEEEeCCCCeeEEecC--------C---CCeEEEEee-cCCC---CCEEEEEEcC
Confidence               5555  445555 55568888887654 3555555541        2   234566666 8884   33233333  


Q ss_pred             -cCCCcEEEEEcCC
Q 024245          228 -YEDGSILVWDIRN  240 (270)
Q Consensus       228 -~~dg~i~vwd~~~  240 (270)
                       ...+.|++||+.+
T Consensus       384 ~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          384 FTTPRQIYKTSVST  397 (695)
T ss_dssp             TTEEEEEEEEETTT
T ss_pred             CCCCCEEEEEECCC
Confidence             2357899999987

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.11  E-value=8.9e-08  Score=69.57  Aligned_cols=191  Identities=9%  Similarity=0.025  Sum_probs=122.7

Q ss_pred             Cccccccccc--ccEEEEEEeCCCCEEEEecCC--CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEe
Q 024245            9 DPVAVLRGHR--ASVTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG   83 (270)
Q Consensus         9 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~   83 (270)
                      +.++++ .|.  .-...+.|++ +.+..+.+.+  ..|+++|+.+++.+..+....   .........  .++.|. ..-
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~--~~~~ly~ltw   82 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVA--WRDRLIQLTW   82 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEE--ETTEEEEEES
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEE--eCCEEEEEEe
Confidence            344555 354  4567999987 5666666665  489999999999998886553   233343334  334554 555


Q ss_pred             CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeE
Q 024245           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  163 (270)
                      .++.+.+||..+.+...    +++.....                                         ..+++++..+
T Consensus        83 ~~~~v~v~D~~tl~~~~----ti~~~~~G-----------------------------------------wglt~dg~~L  117 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRA----RFRYPGEG-----------------------------------------WALTSDDSHL  117 (243)
T ss_dssp             SSSEEEEEETTTTEEEE----EEECSSCC-----------------------------------------CEEEECSSCE
T ss_pred             eCCEEEEEECCcCcEEE----EEeCCCCc-----------------------------------------eEEeeCCCEE
Confidence            68899999999886544    33221110                                         2245677778


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +++-|  ++.|.++|..+.+.+.++..       +-....-..+..+. |.    +|+ .++..-.+..|.+.|.++ ++
T Consensus       118 ~vSdg--s~~l~~iDp~t~~~~~~I~V-------~~~g~~~~~lNeLe-~~----~G~-lyanvw~s~~I~vIDp~t-G~  181 (243)
T 3mbr_X          118 YMSDG--TAVIRKLDPDTLQQVGSIKV-------TAGGRPLDNLNELE-WV----NGE-LLANVWLTSRIARIDPAS-GK  181 (243)
T ss_dssp             EEECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE----TTE-EEEEETTTTEEEEECTTT-CB
T ss_pred             EEECC--CCeEEEEeCCCCeEEEEEEE-------ccCCcccccceeeE-Ee----CCE-EEEEECCCCeEEEEECCC-CC
Confidence            77544  58899999999998888873       11000112233444 44    565 455555677999999999 88


Q ss_pred             ceeeeecc-------------CCCeeEEEeecCCCce
Q 024245          244 PLTAMKVH-------------LEPGLECSMWRNPITM  267 (270)
Q Consensus       244 ~~~~~~~~-------------~~~v~~~~~s~~g~~l  267 (270)
                      .+..+...             .+..+.|||+|++..|
T Consensus       182 V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          182 VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            77776522             1356889999976543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.09  E-value=5e-09  Score=82.07  Aligned_cols=143  Identities=10%  Similarity=0.022  Sum_probs=97.0

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .+.. |+.++|  ++.+|+++ .++.|++||+.+......+..+.  .++.++.+.+  .  .+++++.||.|.+||+.+
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~--~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE--KPVFQLKNVN--N--TLVILNSVNDLSALDLRT  155 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS--SCEEEEEECS--S--EEEEEETTSEEEEEETTT
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceee--cceeeEEecC--C--CEEEEECCCCEEEEEccC
Confidence            3566 999999  88999998 88999999998876666666666  5588888776  4  388899999999999997


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEE
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~  175 (270)
                      +....     ..   ....+                                      ++|||+|  +++  |..||+++
T Consensus       156 ~~~~~-----~~---~~Vs~--------------------------------------v~WSpkG--~~v--g~~dg~i~  185 (388)
T 1xip_A          156 KSTKQ-----LA---QNVTS--------------------------------------FDVTNSQ--LAV--LLKDRSFQ  185 (388)
T ss_dssp             CCEEE-----EE---ESEEE--------------------------------------EEECSSE--EEE--EETTSCEE
T ss_pred             Ccccc-----cc---CCceE--------------------------------------EEEcCCc--eEE--EEcCCcEE
Confidence            75321     00   00000                                      5699999  332  44589999


Q ss_pred             EEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE
Q 024245          176 IWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (270)
Q Consensus       176 iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (270)
                      +|+...++.  ..++..+..-  ..| ......+.++. |.++   +. ++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~--~~~-~~~~~~V~sI~-wl~~---~~-flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSEL--EEL-PVEEYSPLSVT-ILSP---QD-FLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHH--HTS-CTTTSEEEEEE-ESSS---SE-EEEE
T ss_pred             EEcCCCccccccceecCCccc--ccc-cCCCeeEEEEE-EecC---Ce-EEEE
Confidence            999887665  5566321000  000 01235788888 9974   44 5544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=1.4e-07  Score=74.13  Aligned_cols=148  Identities=7%  Similarity=-0.115  Sum_probs=86.0

Q ss_pred             EEeCCCCEEEEecC--CC---cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEE
Q 024245           25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK   89 (270)
Q Consensus        25 ~~s~~~~~l~s~~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~   89 (270)
                      ...|++++++....  ..   .|.++|..+++.+..+....  .+  .++++|  ++++++.+.          .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC--CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence            33467887777653  22   78999999999888776543  33  999999  999998775          367899


Q ss_pred             EEEccCCccCCCCccceecc---------cceEEEEeeccCCccceecC-CCCceEEEeccCceeeeccCCCCCeEecCC
Q 024245           90 CWDIENGGLSSNPSLTIKTN---------SYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVPAE  159 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  159 (270)
                      +||..+.+...    .+...         ......++.+.......... ...+..+| .+++.+.........+.+.|+
T Consensus       101 viD~~t~~~~~----~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~  175 (373)
T 2mad_H          101 VFDPVTFLPIA----DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPG  175 (373)
T ss_pred             EEECCCCcEEE----EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeC
Confidence            99998775433    22111         11112223232222222222 34466678 776655440222122445566


Q ss_pred             CCeEEEEecCCCceEEEEeCCCccee
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      ++..+++ .+.||.+.++|. +++..
T Consensus       176 ~~~~~~~-~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          176 APSTFYL-LCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             CCceEEE-EcCCCCEEEEEC-CCcEE
Confidence            6554443 334677777777 55544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.05  E-value=1.2e-08  Score=79.75  Aligned_cols=157  Identities=11%  Similarity=0.036  Sum_probs=106.0

Q ss_pred             EEeCCCCEEEEecC-----CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEE
Q 024245           25 CFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK   89 (270)
Q Consensus        25 ~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~   89 (270)
                      ...|+++.++....     ++.|.+.|..+++.+..+....  .+ . ++++|  +|++++.++          .++.|.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~--~P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LP-N-PVVAD--DGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SC-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC--CC-c-EEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence            44688888777755     6799999999999999988655  33 4 99999  999887765          367899


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEe
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA  167 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~  167 (270)
                      +||..+.+...    .+.......                                 ...+...  ++|+|||++++++.
T Consensus       113 viD~~t~~v~~----~I~v~~g~r---------------------------------~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D          113 VFDPVTLLPTA----DIELPDAPR---------------------------------FLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             EECTTTCCEEE----EEEETTCCC---------------------------------CCBSCCGGGEEECTTSSEEEEEE
T ss_pred             EEECCCCeEEE----EEECCCccc---------------------------------cccCCCCceEEEcCCCCEEEEEE
Confidence            99999876433    221100000                                 0000011  67999999988754


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ...++.|.++|+.+++.+.++..             .+ +.  . ..|.  ..+ .+++.+.||++.+.++.+.++.
T Consensus       156 ~~~~~~VsVID~~t~~vv~tI~v-------------~g-~~--~-~~P~--g~~-~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGKAFKRMLDV-------------PD-CY--H-IFPT--APD-TFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEEC-------------CS-EE--E-EEEE--ETT-EEEEEETTSCEEEEECCSSSCC
T ss_pred             cCCCCeEEEEECCCCcEEEEEEC-------------CC-cc--e-eecC--CCc-eeEEECCCCCEEEEECCCCCeE
Confidence            33468999999999999998873             11 11  1 2232  223 5667778888888888763443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=5.6e-08  Score=75.57  Aligned_cols=227  Identities=7%  Similarity=-0.058  Sum_probs=118.8

Q ss_pred             ccEEEEEEeCCCCEEEEec--CCCcEEEEeCCCCceeEEEee-----cCCCcceEEEEEeeCCCCCEEEEEeC-----CC
Q 024245           19 ASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGR-----DG   86 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~   86 (270)
                      ..+..++++++|+++++..  .++.++||.+.+++. ..+..     ..+-..+..+++.+  +++++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence            6899999999999988854  234356666554543 22221     11114589999999  8666555433     57


Q ss_pred             cEEEEEccCCccCCCCccceecc----cceEEEEeeccCCccceecC-----CCCceEEEeccCceeeecc---------
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQA-----NEPKDCYEREVGETVDTDS---------  148 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------  148 (270)
                      .|.+||+.+++...  ...+...    ......+.+.......+...     ......++...++..+..-         
T Consensus        94 ~i~~~d~~tg~~~~--~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           94 KLVAWDTLNNQLSR--VIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             EEEEEETTTTEEEE--EEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             eEEEEECCCCeEEE--EEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            89999999887433  1111100    01112222221111111221     1223344544333222110         


Q ss_pred             -----C-----------------CCCC-eEecCCCCeEEEEecCCCceEEEEeCCC---cc-----eeeeeccCcCCCCC
Q 024245          149 -----L-----------------CDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNT---AE-----RCTRLHQNSCGGSP  197 (270)
Q Consensus       149 -----~-----------------~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~---~~-----~~~~~~~~~~~~~~  197 (270)
                           .                 .... ++|+|+|+.++++.. ....+..++...   +.     ....+..      .
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~  244 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIER------Y  244 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEE------E
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEe------c
Confidence                 0                 0011 899999987776433 234555554321   10     0000110      0


Q ss_pred             CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCCce
Q 024245          198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPITM  267 (270)
Q Consensus       198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  267 (270)
                      ++    .+....++ +++   +|. ++++...++.|.+||..+ ++....... +...+.+++|.++|.++
T Consensus       245 g~----~g~pdgia-~d~---~G~-l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          245 SE----KPICDGIS-IDK---DHN-IYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             EE----CCSCSCEE-ECT---TCC-EEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEECTTSCEE
T ss_pred             cc----CCCCceEE-ECC---CCC-EEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEECCCCcEE
Confidence            11    11233455 887   455 888888899999999854 443222222 24568999999988653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.99  E-value=3.1e-07  Score=70.19  Aligned_cols=199  Identities=10%  Similarity=0.035  Sum_probs=112.7

Q ss_pred             ccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEE-EeecC--CCcceEEEEEeeCCCCCEEEEEeCC-------
Q 024245           17 HRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSS-SWVHS--AAHGIVSVATGPSIGLNKVISQGRD-------   85 (270)
Q Consensus        17 h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d-------   85 (270)
                      +...+.+++++++ |+++++... +.|.+||.. ++.... .....  ....+.++++.+  +|+++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccc
Confidence            5567899999999 765555543 469999988 665433 22111  113488999999  88887776655       


Q ss_pred             --------CcEEEEEccCCccCCCCccceecccceEEEEeec--cCCcc--ceec--CCCCceEEEec-cCce----eee
Q 024245           86 --------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV--KEPYA--NAKQ--ANEPKDCYERE-VGET----VDT  146 (270)
Q Consensus        86 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~--~~~~~~~~~~~-~~~~----~~~  146 (270)
                              +.|..||.. ++...    ..... .....+.+.  ..+..  ....  .......|+.. .++.    ...
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~~----~~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~  218 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMIQ----VDTAF-QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEEE----EEEEE-SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-CCEEE----eccCC-CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence                    456666654 33211    11111 111112222  00222  2222  22344556654 2321    122


Q ss_pred             ccCCCC-C----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc
Q 024245          147 DSLCDS-K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (270)
Q Consensus       147 ~~~~~~-~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (270)
                      .+.++. .    ++++++|.. +++. ..++.|.+||..+++.+..+..        +    ...+.+++ |+|   +|+
T Consensus       219 ~~~~~~~~~p~~i~~d~~G~l-~v~~-~~~~~i~~~d~~~g~~~~~~~~--------~----~~~~~~i~-~~~---dg~  280 (314)
T 1pjx_A          219 HIPGTHEGGADGMDFDEDNNL-LVAN-WGSSHIEVFGPDGGQPKMRIRC--------P----FEKPSNLH-FKP---QTK  280 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCE-EEEE-ETTTEEEEECTTCBSCSEEEEC--------S----SSCEEEEE-ECT---TSS
T ss_pred             ECCCCCCCCCCceEECCCCCE-EEEE-cCCCEEEEEcCCCCcEeEEEeC--------C----CCCceeEE-ECC---CCC
Confidence            233332 2    889999964 4433 2368899999987877666652        2    23567777 887   455


Q ss_pred             eEEEEecCCCcEEEEEcCCCCc
Q 024245          222 VNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       222 ~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      .++++...++.|..|++...+.
T Consensus       281 ~l~v~~~~~~~l~~~~~~~~g~  302 (314)
T 1pjx_A          281 TIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EEEEEETTTTEEEEEECSSCBC
T ss_pred             EEEEEeCCCCeEEEEeCCCCCc
Confidence            3455556678999999886443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=4.3e-08  Score=80.02  Aligned_cols=214  Identities=12%  Similarity=0.121  Sum_probs=128.1

Q ss_pred             CCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEE-e-eCCCCCEEEEEe------------------CCC
Q 024245           28 QTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT-G-PSIGLNKVISQG------------------RDG   86 (270)
Q Consensus        28 ~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~s~~------------------~d~   86 (270)
                      +||++++.... +..|.+.|+.+.++.+.+..... .....+++ . |  ++++++.++                  .++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCc
Confidence            37787766554 56799999999998886643322 34788888 4 7  889988774                  245


Q ss_pred             cEEEEEccCCccCCCCccceec-ccceEEEEe--------eccCC-cc-----------------------ceecCC---
Q 024245           87 TVKCWDIENGGLSSNPSLTIKT-NSYHFCKLS--------LVKEP-YA-----------------------NAKQAN---  130 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~-~~-----------------------~~~~~~---  130 (270)
                      .+.+.|..+.+...    ++.. .......++        ..... ..                       .....+   
T Consensus       176 ~vtvID~~t~~v~~----qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          176 VFTAVDADKWEVAW----QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEETTTTEEEE----EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEECCCCeEEE----EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            78899988765433    2211 000111111        11000 00                       000000   


Q ss_pred             --CCceEEEecc--Cce-eeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcc------------eeeeeccC
Q 024245          131 --EPKDCYEREV--GET-VDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------RCTRLHQN  191 (270)
Q Consensus       131 --~~~~~~~~~~--~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~------------~~~~~~~~  191 (270)
                        +.+.++|..+  ++. +.....+...  +.++|||+++++ ++..+.+|.++|+.+.+            ...++.  
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--  328 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--  328 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred             EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE-eCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence              2244566665  333 2223233333  999999998887 56668999999999653            222222  


Q ss_pred             cCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC---------CcceeeeeccCCCe-----eE
Q 024245          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHLEPG-----LE  257 (270)
Q Consensus       192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v-----~~  257 (270)
                                 .......++ |+|   +|. ..++...|+.|.+||+.+.         .+.+.++..|-.+-     .+
T Consensus       329 -----------vG~gP~h~a-F~~---dG~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g  392 (595)
T 1fwx_A          329 -----------LGLGPLHTA-FDG---RGN-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG  392 (595)
T ss_dssp             -----------CCSCEEEEE-ECT---TSE-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT
T ss_pred             -----------CCCCcceEE-ECC---CCe-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccc
Confidence                       122355666 998   463 7888889999999998751         34566666554321     34


Q ss_pred             EEeecCCCce
Q 024245          258 CSMWRNPITM  267 (270)
Q Consensus       258 ~~~s~~g~~l  267 (270)
                      +.++|||++|
T Consensus       393 ~t~~~DGk~l  402 (595)
T 1fwx_A          393 ETLDATNDWL  402 (595)
T ss_dssp             TSTTCCSSEE
T ss_pred             eEeCCCCCEE
Confidence            4668899886

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.91  E-value=4.9e-06  Score=62.11  Aligned_cols=218  Identities=7%  Similarity=-0.041  Sum_probs=121.5

Q ss_pred             ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~   96 (270)
                      ..+.+++|++++. ++++-...+.|.++++........+....  .....+++.+  ++..|+ +-...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC--CCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCC
Confidence            4567999999655 44555567899999987654433332222  3478999998  655555 5556778999998754


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCC--CceE--EEeccCc--eeeeccCCCCC-eEecCCCCeEEEEecC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE--PKDC--YEREVGE--TVDTDSLCDSK-DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~--~~~~~~~~~~~-~~~s~~~~~~~~~~~~  169 (270)
                      ....  +  ..........+.+.......+.....  ...+  +++....  .+......... +++++++.+++++. .
T Consensus       112 ~~~~--~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~  186 (267)
T 1npe_A          112 QRRV--L--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD-A  186 (267)
T ss_dssp             SCEE--E--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE-T
T ss_pred             CEEE--E--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE-C
Confidence            3211  1  11111112223333221212222211  1222  3332211  11111111111 89999988887754 4


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      ..+.|.++|.........+.        +.     .....++ ..    ++. ++++....+.|..+|..+ ++.+..+.
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~--------~~-----~~P~gi~-~d----~~~-lyva~~~~~~v~~~d~~~-g~~~~~i~  246 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLE--------GL-----QYPFAVT-SY----GKN-LYYTDWKTNSVIAMDLAI-SKEMDTFH  246 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEE--------CC-----CSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-TEEEEEEC
T ss_pred             CCCEEEEEecCCCceEEEec--------CC-----CCceEEE-Ee----CCE-EEEEECCCCeEEEEeCCC-CCceEEEc
Confidence            46899999997544333332        11     1123333 32    233 666666778999999988 77777776


Q ss_pred             ccC-CCeeEEEeecCCC
Q 024245          250 VHL-EPGLECSMWRNPI  265 (270)
Q Consensus       250 ~~~-~~v~~~~~s~~g~  265 (270)
                      ... .....+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            433 2578999999875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.89  E-value=1.9e-07  Score=80.14  Aligned_cols=198  Identities=10%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             EEEEEeCCCCEEEEecCCCc--------------EEEEeCCCCce--eEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           22 TDVCFHQTKPILFAGTTGGE--------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~--------------i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ..++|+|| +.|+.++.++.              |++|++.++..  ...+........+..+.|+|  +|++|+..+.+
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~  288 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSE  288 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEEC
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEc
Confidence            57899999 88888776654              89999977653  22333332213488999999  99988876654


Q ss_pred             C-----cEEEEEccCCccCCCCccceecc-cceEEEEeeccCCccceecCC---CCceEEEeccC-ceeeeccCCCCC-e
Q 024245           86 G-----TVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQAN---EPKDCYEREVG-ETVDTDSLCDSK-D  154 (270)
Q Consensus        86 ~-----~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-~  154 (270)
                      +     .|.+||+.++...  +...+... ......+.............+   .....+++... ......+..+.. +
T Consensus       289 ~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l  366 (741)
T 1yr2_A          289 GTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL  366 (741)
T ss_dssp             TTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE
T ss_pred             cCCCcceEEEEECCCCCCc--ccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE
Confidence            3     8999999876211  01111111 111122222222111111111   12344555543 223333333333 2


Q ss_pred             -EecCCCCeEEEEecCCCceEEEEeCC-CcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe---cC
Q 024245          155 -DVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YE  229 (270)
Q Consensus       155 -~~s~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~---~~  229 (270)
                       .+++.+..+++ +...|+..+||.+. +++....+..        +   ..+.+..+. ++|+   +..++++.   ..
T Consensus       367 ~~~~~~~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~--------~---~~~~v~~~~-~s~d---~~~l~~~~ss~~~  430 (741)
T 1yr2_A          367 ESVGIAGNRLFA-SYIHDAKSQVLAFDLDGKPAGAVSL--------P---GIGSASGLS-GRPG---DRHAYLSFSSFTQ  430 (741)
T ss_dssp             EEEEEEBTEEEE-EEEETTEEEEEEEETTSCEEEECBC--------S---SSCEEEEEE-CCBT---CSCEEEEEEETTE
T ss_pred             EEEEEECCEEEE-EEEECCEEEEEEEeCCCCceeeccC--------C---CCeEEEEee-cCCC---CCEEEEEEcCCCC
Confidence             23334556665 45567877777554 3555555541        1   234566676 8885   33133333   34


Q ss_pred             CCcEEEEEcCC
Q 024245          230 DGSILVWDIRN  240 (270)
Q Consensus       230 dg~i~vwd~~~  240 (270)
                      .+.|++||+.+
T Consensus       431 P~~i~~~d~~t  441 (741)
T 1yr2_A          431 PATVLALDPAT  441 (741)
T ss_dssp             EEEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            57899999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.87  E-value=8.4e-07  Score=75.24  Aligned_cols=211  Identities=10%  Similarity=0.067  Sum_probs=122.3

Q ss_pred             EEEEEeCCCCEEEEecCCC-------------------cEEEEeCCCCceeEEEeecCC-------CcceEEEEEeeCCC
Q 024245           22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIG   75 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~   75 (270)
                      ..++++|++.+++.++.++                   .|..+|..+++.+..++...+       ......+....  +
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--A  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--T
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--C
Confidence            4678899888888877664                   599999999999888764321       01223344445  6


Q ss_pred             C---CEEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCccceecCCCCceEEEeccCc--eeeeccC
Q 024245           76 L---NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSL  149 (270)
Q Consensus        76 ~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  149 (270)
                      |   ..++.++.+|.+.++|.++++.+.    ..+..... ...+.....+.    ..... . +   .++  .+.....
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~----~~~~~-~-~---~~~~~~~~P~~~  390 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPI----GIAAA-R-D---GSKPQDAVPGPY  390 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEE----ECGGG-G-C---TTSCEECSSCTT
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCcee----ecccc-C-c---CCCccEECcCcc
Confidence            6   678899999999999999997643    22211110 00000000000    00000 0 0   000  0000111


Q ss_pred             CCCC---eEecCCCCeEEEEecC-----------------------------------------CCceEEEEeCCCccee
Q 024245          150 CDSK---DDVPAEGPKYMAVAGE-----------------------------------------QLSEVEIWDLNTAERC  185 (270)
Q Consensus       150 ~~~~---~~~s~~~~~~~~~~~~-----------------------------------------~d~~i~iwd~~~~~~~  185 (270)
                      +...   ++++|+...+++.+..                                         ..+.|..||+.+++.+
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence            1111   6778877666543210                                         1378999999999988


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-CCeeEEEeecCC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPGLECSMWRNP  264 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~s~~g  264 (270)
                      .++..       +  .    ..+... +..   ++. +++.++.||.+++||.++ ++.+..+.... ....-+.|..+|
T Consensus       471 W~~~~-------~--~----~~~~g~-~~~---~g~-~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          471 WSVEH-------V--S----PWNGGT-LTT---AGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEE-------S--S----SCCCCE-EEE---TTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETT
T ss_pred             eecCC-------C--C----CCcCcc-eEe---CCC-EEEEECCCCcEEEEECCC-CceeeeeeCCCCcccCCEEEEeCC
Confidence            88763       1  1    111111 333   233 777889999999999999 88888887433 223346667777


Q ss_pred             Cc
Q 024245          265 IT  266 (270)
Q Consensus       265 ~~  266 (270)
                      +.
T Consensus       532 ~~  533 (677)
T 1kb0_A          532 RQ  533 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=9.8e-06  Score=61.82  Aligned_cols=217  Identities=7%  Similarity=-0.041  Sum_probs=116.4

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCC
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~   96 (270)
                      .....++|+++|+++++-..++.|..||... +....+.. .  .....+++.+  +++++++....+  .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~--~~p~gia~~~--dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-E--GKVSGLAFTS--NGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-S--SEEEEEEECT--TSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-C--CCceeEEEcC--CCcEEEEeccCCcceEEEEcCCCC
Confidence            5678999999999777777889999999875 33333332 2  4488999999  888666554332  4666676666


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEecc--Cc-eee---e-----ccCCC-CC-eEecCCCCeE
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--GE-TVD---T-----DSLCD-SK-DDVPAEGPKY  163 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~---~-----~~~~~-~~-~~~s~~~~~~  163 (270)
                      +...  +......... ..... ...............+|.+..  ++ .+.   .     ..... .. -.++++++++
T Consensus       106 ~~~~--~~~~~~~~~~-~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l  181 (306)
T 2p4o_A          106 TVET--LLTLPDAIFL-NGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL  181 (306)
T ss_dssp             CEEE--EEECTTCSCE-EEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred             eEEE--EEeCCCcccc-Ccccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence            5321  1111111111 11111 111111222222234443332  21 111   0     00111 11 2338888877


Q ss_pred             EEEecCCCceEEEEeCCC-cce--eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          164 MAVAGEQLSEVEIWDLNT-AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +++ -...+.|..||+.. ++.  ...+..             ......++ +.+   +|. ++++....+.|.++|.. 
T Consensus       182 yv~-d~~~~~I~~~~~~~~g~~~~~~~~~~-------------~~~P~gi~-vd~---dG~-l~va~~~~~~V~~~~~~-  241 (306)
T 2p4o_A          182 YVS-NTEKMLLLRIPVDSTDKPGEPEIFVE-------------QTNIDDFA-FDV---EGN-LYGATHIYNSVVRIAPD-  241 (306)
T ss_dssp             EEE-ETTTTEEEEEEBCTTSCBCCCEEEEE-------------SCCCSSEE-EBT---TCC-EEEECBTTCCEEEECTT-
T ss_pred             EEE-eCCCCEEEEEEeCCCCCCCccEEEec-------------cCCCCCeE-ECC---CCC-EEEEeCCCCeEEEECCC-
Confidence            764 44578999999874 321  111110             01223344 776   465 66666677889999865 


Q ss_pred             CCcc--eeeeeccCCCeeEEEee---cCCCc
Q 024245          241 PGIP--LTAMKVHLEPGLECSMW---RNPIT  266 (270)
Q Consensus       241 ~~~~--~~~~~~~~~~v~~~~~s---~~g~~  266 (270)
                       ++.  +..+......+++++|.   ||+..
T Consensus       242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~  271 (306)
T 2p4o_A          242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTA  271 (306)
T ss_dssp             -CCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             -CCEEEEeecccccCCceEEEEecccCCCCE
Confidence             443  22333333568999998   78654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.83  E-value=7.7e-07  Score=75.62  Aligned_cols=214  Identities=11%  Similarity=0.068  Sum_probs=120.5

Q ss_pred             EEEEEeCCCCEEEEecCCCc-------------------EEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGE-------------------LRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (270)
                      ..+++.|++.+++.++.++.                   |..+|.++|+.+..++...+.       .++.......  +
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~  315 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--D  315 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--C
Confidence            36789998888888887763                   999999999999887653210       1122223333  4


Q ss_pred             CC---EEEEEeCCCcEEEEEccCCccCCCCccceecccce-EEEEeec-cCCccceecCCCCceEEEeccCc--eeeecc
Q 024245           76 LN---KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLV-KEPYANAKQANEPKDCYEREVGE--TVDTDS  148 (270)
Q Consensus        76 ~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  148 (270)
                      |.   .++.++.+|.++++|.++++.+.    ..+..... ...+... ..+..   ...   ..+.....+  ......
T Consensus       316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~w~~~~~~~~~~pi~---~~~---~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          316 GKPRKVLMQAPKNGFFYVIDRATGELLS----AKGIVPQSWTKGMDMKTGRPIL---DEE---NAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEEETTTTEEEE---CHH---HHCTTTSSSCEEESSCT
T ss_pred             CcEEEEEEEECCCCeEEEEECCCCCEec----cccccccccccccCccCCCccc---chh---hccccCCCCeeEeCCCc
Confidence            44   78899999999999999997643    11111100 0000000 00000   000   000000000  000000


Q ss_pred             CCCCC---eEecCCCCeEEEEec-------------------------------------------CCCceEEEEeCCCc
Q 024245          149 LCDSK---DDVPAEGPKYMAVAG-------------------------------------------EQLSEVEIWDLNTA  182 (270)
Q Consensus       149 ~~~~~---~~~s~~~~~~~~~~~-------------------------------------------~~d~~i~iwd~~~~  182 (270)
                      .+...   ++++|+...+++.+.                                           ..+|.|+.||+.++
T Consensus       386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG  465 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ  465 (689)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred             ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence            11111   566666554443211                                           01488999999999


Q ss_pred             ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCC-eeEEEee
Q 024245          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-GLECSMW  261 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~s  261 (270)
                      +.+.++..        +.. ..+..     +..   .+. +++.|+.||.|+.||.++ ++.+..++..... ..-+.|.
T Consensus       466 ~~~W~~~~--------~~~-~~~g~-----~~t---agg-lvf~gt~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~ty~  526 (689)
T 1yiq_A          466 QAAWEVPY--------VTI-FNGGT-----LST---AGN-LVFEGSADGRVIAYAADT-GEKLWEQPAASGVMAAPVTYS  526 (689)
T ss_dssp             EEEEEEEE--------SSS-CCCCE-----EEE---TTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEE
T ss_pred             CeEeEccC--------CCC-ccCcc-----ceE---CCC-EEEEECCCCcEEEEECCC-CccceeeeCCCCcccCceEEE
Confidence            99888873        211 11111     332   233 888899999999999999 8888888754332 2447778


Q ss_pred             cCCCc
Q 024245          262 RNPIT  266 (270)
Q Consensus       262 ~~g~~  266 (270)
                      .||+.
T Consensus       527 ~~G~q  531 (689)
T 1yiq_A          527 VDGEQ  531 (689)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            88864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.83  E-value=3.7e-07  Score=72.52  Aligned_cols=151  Identities=11%  Similarity=0.013  Sum_probs=98.1

Q ss_pred             CCCCEEEEecC-C----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEE
Q 024245           28 QTKPILFAGTT-G----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD   92 (270)
Q Consensus        28 ~~~~~l~s~~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd   92 (270)
                      +++..++.... +    +.|.++|..+++.+..+....  .+  .++++|  ++++|+.+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence            36665555443 2    699999999999999998665  44  899999  999888765          467899999


Q ss_pred             ccCCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      ..+.+...    .+... .....                                .......+.|+|||++++++....+
T Consensus       156 ~~t~~vv~----~I~v~g~~r~~--------------------------------~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          156 PVTFLPIA----DIELPDAPRFL--------------------------------VGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             TTTCCEEE----EEEETTCCCCC--------------------------------BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             CCCCcEEE----EEECCCccccc--------------------------------cCCCcceEEEcCCCCEEEEEecCCC
Confidence            99886533    22110 00000                                0000011679999999887543336


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.|.+.|+.+++.+.++..             .+.   .. ..|.+  .+ .+++.+.||.+.+.+..+
T Consensus       200 ~~VsVID~~t~kvv~~I~v-------------~g~---~~-~~p~g--~~-~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDV-------------PDC---YH-IFPAS--PT-VFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             CEEEEEETTTTEEEEEEEC-------------CSE---EE-EEEEE--TT-EEEEEETTSSEEEEECCT
T ss_pred             CeEEEEECCCCeEEEEEEc-------------CCc---ee-eccCC--Cc-EEEEEcCCCCEEEEECCC
Confidence            8999999999999888873             111   11 33321  12 555666777777777744

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.81  E-value=2.5e-06  Score=64.79  Aligned_cols=186  Identities=10%  Similarity=-0.052  Sum_probs=100.5

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec--CCCcceEEEEEeeCCCCCEEEEEeC---------C
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGR---------D   85 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~---------d   85 (270)
                      ....+.+++++++|+++++.  ++.|.+||.++++........  .....+..+++.|  +|+++++...         .
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCT
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccC
Confidence            34678999999999966554  457999999877654333221  1114578999999  8887765432         2


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEe--ccCce----eeeccCCC---CC-
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYER--EVGET----VDTDSLCD---SK-  153 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~----~~~~~~~~---~~-  153 (270)
                      ..-.+|.+.......    ...........+.+.......+...  ...+..+++  .++..    ....+...   .. 
T Consensus       128 ~~~~l~~~d~~g~~~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g  203 (297)
T 3g4e_A          128 HQGALYSLFPDHHVK----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG  203 (297)
T ss_dssp             TCEEEEEECTTSCEE----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred             CCcEEEEEECCCCEE----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence            334666665332111    1111111111222222221122222  233344554  23321    11112211   11 


Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEEec
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGY  228 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~~~  228 (270)
                      +++.++|. ++++. ..++.|.+||..+++.+..+..        +    ...+.+++ |. |+   ++.++++..
T Consensus       204 ~~~d~~G~-lwva~-~~~~~v~~~d~~tG~~~~~i~~--------p----~~~~t~~~-f~g~d---~~~L~vt~~  261 (297)
T 3g4e_A          204 MCIDAEGK-LWVAC-YNGGRVIRLDPVTGKRLQTVKL--------P----VDKTTSCC-FGGKN---YSEMYVTCA  261 (297)
T ss_dssp             EEEBTTSC-EEEEE-ETTTEEEEECTTTCCEEEEEEC--------S----SSBEEEEE-EESGG---GCEEEEEEB
T ss_pred             eEECCCCC-EEEEE-cCCCEEEEEcCCCceEEEEEEC--------C----CCCceEEE-EeCCC---CCEEEEEcC
Confidence            89999996 44433 3357899999998998888873        2    23567777 97 63   332444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.70  E-value=5.4e-06  Score=66.00  Aligned_cols=199  Identities=9%  Similarity=-0.057  Sum_probs=107.0

Q ss_pred             EEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEE---ee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           24 VCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSS---WV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ++|+++++.|+++..++  .|.+++...+.....+   .. ..  ..+.+++++|  ++..|+.+..++.|..||..++.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~--~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS--GKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC--SCCCBCEECT--TSSEEEEECTTCEEEEEETTTCC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc--CCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCC
Confidence            89999999888888766  7889988766544443   11 22  4578899999  66677777778899999998764


Q ss_pred             cCCCCccc--eeccc-ce-EEEEeeccCCccceecCCCCceEEEeccCceeeec------------------cCCCCCeE
Q 024245           98 LSSNPSLT--IKTNS-YH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------------------SLCDSKDD  155 (270)
Q Consensus        98 ~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  155 (270)
                      ...  ...  ..... .. ...+.+.......+........++.+.........                  +.....++
T Consensus       252 ~~~--~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia  329 (409)
T 3hrp_A          252 VTL--IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT  329 (409)
T ss_dssp             EEE--EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred             EEE--EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence            311  100  00000 00 00222222112222223222333322211111110                  11111189


Q ss_pred             ecCCCCeEEEEecC-CCceEEEEeCCCcceeeeeccCcCCCCCCccc-----CCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          156 VPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       156 ~s~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                      ++++|. +++ +-. .++.|+.||+.+++..........   .+...     ........++ ++|+   |. ++++-..
T Consensus       330 ~d~dG~-lyv-ad~~~~~~I~~~~~~~G~v~~~~g~~~~---~g~~~g~~~~~~~~~P~gia-vd~~---g~-lyVad~~  399 (409)
T 3hrp_A          330 VDEDGN-FYI-VDGFKGYCLRKLDILDGYVSTVAGQVDV---ASQIDGTPLEATFNYPYDIC-YDGE---GG-YWIAEAW  399 (409)
T ss_dssp             ECTTCC-EEE-EETTTTCEEEEEETTTTEEEEEEECTTC---BSCCCBSTTTCCBSSEEEEE-ECSS---SE-EEEEEST
T ss_pred             EeCCCC-EEE-EeCCCCCEEEEEECCCCEEEEEeCCCCC---CCcCCCChhceEeCCceEEE-EcCC---CC-EEEEECC
Confidence            999997 554 344 578999999877764332221000   00000     0112455666 7773   44 6777777


Q ss_pred             CCcEEEEEc
Q 024245          230 DGSILVWDI  238 (270)
Q Consensus       230 dg~i~vwd~  238 (270)
                      ++.|+.+++
T Consensus       400 n~~Ir~i~~  408 (409)
T 3hrp_A          400 GKAIRKYAV  408 (409)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            778877765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.64  E-value=2.2e-06  Score=67.79  Aligned_cols=183  Identities=14%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             CCCCEE-EEecCCCcEEEEeCCCC----ceeEEEee-----cCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEE
Q 024245           28 QTKPIL-FAGTTGGELRIWDTVQH----RTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCW   91 (270)
Q Consensus        28 ~~~~~l-~s~~~dg~i~vwd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~w   91 (270)
                      +++++| +++..++.|.|+|+.+.    +.++++..     ..+...-..+...|  +| .++++..+      +.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEE
Confidence            667755 55777899999999755    55555520     00102356678889  87 76766555      689999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec---
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---  168 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---  168 (270)
                      |.++.+.+.    ..+..... ..+.                                  ..+-|+|+++.++. +.   
T Consensus       170 D~~T~~v~~----~~~~~~~~-~~~~----------------------------------Yd~~~~p~~~~mvs-S~wg~  209 (462)
T 2ece_A          170 DHYSFEPLG----KWEIDRGD-QYLA----------------------------------YDFWWNLPNEVLVS-SEWAV  209 (462)
T ss_dssp             CTTTCCEEE----ECCSBCTT-CCCC----------------------------------CCEEEETTTTEEEE-CBCCC
T ss_pred             ECCCCeEEE----EEccCCCC-cccc----------------------------------ceEEECCCCCEEEE-ccCcC
Confidence            998876543    22111000 0000                                  00336888885553 31   


Q ss_pred             ---------------CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeee-ecCCCCCCCceEEEEec----
Q 024245          169 ---------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGY----  228 (270)
Q Consensus       169 ---------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~~~----  228 (270)
                                     ..+.+|.+||+.+++.+.++..       +.   .......+. +|+|+   +++.++++-    
T Consensus       210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v-------g~---~g~~P~~i~f~~~Pd---g~~aYV~~e~~~~  276 (462)
T 2ece_A          210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL-------GE---ENRMALELRPLHDPT---KLMGFINMVVSLK  276 (462)
T ss_dssp             HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-------CT---TEEEEEEEEECSSTT---CCEEEEEEEEETT
T ss_pred             ccccccccchhhhhhccCCEEEEEECCCCcEeeEEec-------CC---CCCccceeEeeECCC---CCEEEEEEeeecc
Confidence                           2368999999999888888874       11   011222232 15884   553444454    


Q ss_pred             -CCCcEEEEEcCCCCc--ceeee--ec----------------cCCCeeEEEeecCCCce
Q 024245          229 -EDGSILVWDIRNPGI--PLTAM--KV----------------HLEPGLECSMWRNPITM  267 (270)
Q Consensus       229 -~dg~i~vwd~~~~~~--~~~~~--~~----------------~~~~v~~~~~s~~g~~l  267 (270)
                       .+++|.+|.... ++  ..+.+  ..                -...+..|.+||||++|
T Consensus       277 ~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          277 DLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             TCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             CCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence             677888776654 32  11111  00                02357889999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.59  E-value=2.3e-05  Score=60.81  Aligned_cols=82  Identities=15%  Similarity=0.090  Sum_probs=59.4

Q ss_pred             ccccccEEEEEEeCCCCEEEEecC-----CCcEEEEeCCCCceeEEEeecC----CCcceEEEEEeeCCCCCEE-EEEe-
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATGPSIGLNKV-ISQG-   83 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l-~s~~-   83 (270)
                      .+|-..+.+++++++|+++++-..     ++.|.+||+.+++.+..+....    ....+..+++.+  ++..+ ++-. 
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~  140 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPA  140 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECC
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCc
Confidence            346678999999999886665433     5789999999998777765431    113468999997  54444 5555 


Q ss_pred             --CCCcEEEEEccCCcc
Q 024245           84 --RDGTVKCWDIENGGL   98 (270)
Q Consensus        84 --~d~~i~~wd~~~~~~   98 (270)
                        .++.|.+||+.+++.
T Consensus       141 ~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SGGGCEEEEEETTTCCE
T ss_pred             cCCCCeEEEEECCCCCE
Confidence              678999999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.58  E-value=6.6e-05  Score=57.79  Aligned_cols=185  Identities=11%  Similarity=0.016  Sum_probs=96.3

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec--CCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRD----GTVKCW   91 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~w   91 (270)
                      ...+.+++|+++|+++++. .+ .|.+||..+++........  .....+..++++|  +|+++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEE
Confidence            4578999999999877765 44 4999999887654332211  1113588999999  88876654322    234455


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEec--cC-ce----eeeccCCCCC----eEecC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYERE--VG-ET----VDTDSLCDSK----DDVPA  158 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~----~~~~~~~~~~----~~~s~  158 (270)
                      .+.+++...     +.........+.+...........  ...+..+++.  ++ ..    ....+.....    +++.+
T Consensus       165 ~~~~g~~~~-----~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          165 HVAKGKVTK-----LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EEETTEEEE-----EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEeCCcEEE-----eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            444443211     111111111222222221122222  2334445553  33 21    1111221111    88899


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecC-CCCCCCceEEEEecCC
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGYED  230 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~~~~d  230 (270)
                      +|..++ ++. .++.|.+||. +++.+..+..        +    ...+.+++ |. |+   ++.++++...+
T Consensus       240 ~G~lwv-a~~-~~~~v~~~d~-~g~~~~~i~~--------~----~~~~~~~a-f~g~d---~~~L~vt~~~~  293 (326)
T 2ghs_A          240 EGHIWN-ARW-GEGAVDRYDT-DGNHIARYEV--------P----GKQTTCPA-FIGPD---ASRLLVTSARE  293 (326)
T ss_dssp             TSCEEE-EEE-TTTEEEEECT-TCCEEEEEEC--------S----CSBEEEEE-EESTT---SCEEEEEEBCT
T ss_pred             CCCEEE-EEe-CCCEEEEECC-CCCEEEEEEC--------C----CCCcEEEE-EecCC---CCEEEEEecCC
Confidence            996444 332 2478999998 5777666662        1    22466776 87 63   33244444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.57  E-value=1.5e-05  Score=60.72  Aligned_cols=189  Identities=8%  Similarity=-0.048  Sum_probs=102.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC--CcceEEEEEeeCCCCCEEEE----EeC
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGLNKVIS----QGR   84 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s----~~~   84 (270)
                      +..+..+...+..++++++|+++++...++.|.+|+.. ++..........  ...+..+++.|  +|+++++    +..
T Consensus        78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~  154 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLR  154 (305)
T ss_dssp             EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGS
T ss_pred             EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCcc
Confidence            34455566778999999999977776667889999986 543322211110  12367899999  9888876    332


Q ss_pred             -------------CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC-------CCceEEEeccCc--
Q 024245           85 -------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-------EPKDCYEREVGE--  142 (270)
Q Consensus        85 -------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--  142 (270)
                                   .+.|..||..+++...  +  ...  .....+.+............       ..+..+++....  
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~--~--~~~--~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~  228 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSPLQR--M--ADL--DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH  228 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCCCEE--E--EEE--SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred             ccccccccccccCCCeEEEEcCCCCcEEE--E--ecC--CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence                         2456667766665322  1  111  11112222222221222221       234445554332  


Q ss_pred             ---eeeeccCCCCC-eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCC
Q 024245          143 ---TVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (270)
Q Consensus       143 ---~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (270)
                         .......+... +++.++|. +++ +. . +.|.+||. +++.+..+..        .     ..+..++ |.|+  
T Consensus       229 ~~~~~~~~~~~~pdgi~~d~~G~-lwv-~~-~-~gv~~~~~-~g~~~~~~~~--------~-----~~~~~~~-f~~d--  287 (305)
T 3dr2_A          229 DRRHFASVPDGLPDGFCVDRGGW-LWS-SS-G-TGVCVFDS-DGQLLGHIPT--------P-----GTASNCT-FDQA--  287 (305)
T ss_dssp             EEEEEECCSSSCCCSEEECTTSC-EEE-CC-S-SEEEEECT-TSCEEEEEEC--------S-----SCCCEEE-ECTT--
T ss_pred             CCeEEEECCCCCCCeEEECCCCC-EEE-ec-C-CcEEEECC-CCCEEEEEEC--------C-----CceeEEE-EeCC--
Confidence               11111112222 89999997 444 23 3 35999998 4777777762        1     1355666 8864  


Q ss_pred             CCceEEEEecCCC
Q 024245          219 QGFVNVLAGYEDG  231 (270)
Q Consensus       219 ~g~~~l~~~~~dg  231 (270)
                       ++ .|+.++.++
T Consensus       288 -~~-~L~it~~~~  298 (305)
T 3dr2_A          288 -QQ-RLFITGGPC  298 (305)
T ss_dssp             -SC-EEEEEETTE
T ss_pred             -CC-EEEEEcCCe
Confidence             44 555555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.54  E-value=1.9e-05  Score=67.38  Aligned_cols=195  Identities=8%  Similarity=-0.013  Sum_probs=104.9

Q ss_pred             EEEEEeCCCCEEEEecCCC-------------cEEEEeCCCCce--eEEEeecC-CCcceEEEEEeeCCCCCEEEEE-eC
Q 024245           22 TDVCFHQTKPILFAGTTGG-------------ELRIWDTVQHRT--VSSSWVHS-AAHGIVSVATGPSIGLNKVISQ-GR   84 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg-------------~i~vwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~-~~   84 (270)
                      ..++|+ ||+.|+.++.+.             .|++|++.++..  ...+.... ....+..+.|+|  +|++|+.. +.
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~  254 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAAN  254 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEES
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEcc
Confidence            578899 999888887774             399999987643  22333221 113478899999  99987533 22


Q ss_pred             ---CCcEEEEEccCCccCCCCccceecccc-eEEEEeeccCCccceecCC---CCceEEEeccCce--eeeccCCCCC--
Q 024245           85 ---DGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQAN---EPKDCYEREVGET--VDTDSLCDSK--  153 (270)
Q Consensus        85 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~--  153 (270)
                         +..|.++|+.++...   ...+..... ....+.............+   .....+++..+..  .. .+..+..  
T Consensus       255 ~~~~~~i~~~d~~~~~~~---~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~  330 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAP---LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR-DLIPERQQV  330 (693)
T ss_dssp             SSSCCEEEEEETTSTTCC---CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE-EEECCCSSC
T ss_pred             CCCCcEEEEEECCCCCCc---eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE-EEecCCCCE
Confidence               348999999776311   112221111 1111222222211111111   2223345544332  11 1222222  


Q ss_pred             eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--
Q 024245          154 DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--  229 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--  229 (270)
                      +.|+++++.+++. ...++  .|++||+.. .....+..           +..+.+..+. ++|+   +..++++.+.  
T Consensus       331 ~~~s~~g~~lv~~-~~~~g~~~l~~~d~~g-~~~~~l~~-----------p~~~~~~~~~-~~~d---~~~l~~~~ss~~  393 (693)
T 3iuj_A          331 LTVHSGSGYLFAE-YMVDATARVEQFDYEG-KRVREVAL-----------PGLGSVSGFN-GKHD---DPALYFGFENYA  393 (693)
T ss_dssp             EEEEEETTEEEEE-EEETTEEEEEEECTTS-CEEEEECC-----------SSSSEEEECC-CCTT---CSCEEEEEECSS
T ss_pred             EEEEEECCEEEEE-EEECCeeEEEEEECCC-CeeEEeec-----------CCCceEEeee-cCCC---CCEEEEEecCCC
Confidence            6899999887764 33344  689999874 44445542           1223455555 7764   3313333332  


Q ss_pred             -CCcEEEEEcCC
Q 024245          230 -DGSILVWDIRN  240 (270)
Q Consensus       230 -dg~i~vwd~~~  240 (270)
                       -+.|+.||+.+
T Consensus       394 tP~~l~~~d~~~  405 (693)
T 3iuj_A          394 QPPTLYRFEPKS  405 (693)
T ss_dssp             SCCEEEEECTTT
T ss_pred             CCCEEEEEECCC
Confidence             27899999876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=0.00011  Score=54.21  Aligned_cols=205  Identities=7%  Similarity=-0.021  Sum_probs=118.9

Q ss_pred             cccccccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           14 LRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      +.|-...+..++|+|++. ++++...++.|...|.. ++.++.+..... .....|++.+  ++.++++.-.++.+.+++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~--~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIG--DNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECS--TTEEEEEETTTTEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeC--CCEEEEEECCCCcEEEEE
Confidence            445567899999999765 55557778899999988 888877754321 3478899988  877667666778888888


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCc
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      +.......    ..       .......   .                   ....-.+-+.+++.|.+..++++....-.
T Consensus        98 v~~~~~i~----~~-------~~~~~~~---~-------------------~~~~N~g~EGLA~d~~~~~L~va~E~~p~  144 (255)
T 3qqz_A           98 LTPNSEVK----IL-------KKIKIPL---Q-------------------ESPTNCGFEGLAYSRQDHTFWFFKEKNPI  144 (255)
T ss_dssp             ECTTCCEE----EE-------EEEECCC---S-------------------SCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred             cCCCCeee----ee-------eeecccc---c-------------------cccccCCcceEEEeCCCCEEEEEECcCCc
Confidence            86543110    00       0000000   0                   00000111118899999888875543222


Q ss_pred             eEEEEeC-CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          173 EVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       173 ~i~iwd~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      .|..|+- .....+..+..+..    .. ........+++ ++|.  .++ +++.......|..+|..  ++++..+.-.
T Consensus       145 ~i~~~~g~~~~~~l~i~~~~~~----~~-~~~~~d~S~l~-~dp~--tg~-lliLS~~s~~L~~~d~~--g~~~~~~~L~  213 (255)
T 3qqz_A          145 EVYKVNGLLSSNELHISKDKAL----QR-QFTLDDVSGAE-FNQQ--KNT-LLVLSHESRALQEVTLV--GEVIGEMSLT  213 (255)
T ss_dssp             EEEEEESTTCSSCCEEEECHHH----HH-TCCSSCCCEEE-EETT--TTE-EEEEETTTTEEEEECTT--CCEEEEEECS
T ss_pred             eEEEEcccccCCceeeecchhh----cc-ccccCCceeEE-EcCC--CCe-EEEEECCCCeEEEEcCC--CCEEEEEEcC
Confidence            5555551 01111222210000    00 00112345666 8886  566 77777788899999977  4555555432


Q ss_pred             C---------CCeeEEEeecCCCc
Q 024245          252 L---------EPGLECSMWRNPIT  266 (270)
Q Consensus       252 ~---------~~v~~~~~s~~g~~  266 (270)
                      .         .....|+|.++|..
T Consensus       214 ~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          214 KGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             TTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             CccCCcccccCCCCeeEECCCCCE
Confidence            1         25689999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.52  E-value=1.1e-05  Score=63.34  Aligned_cols=189  Identities=14%  Similarity=0.152  Sum_probs=97.1

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCc---ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceec
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      .++.++.++.|..+|..+++.+..+.......   .......    .+..++.+..++.|..+|..+++...    ....
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~~~w----~~~~  216 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVVGGDNGRVSAVLMEQGQMIW----QQRI  216 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEECCTTTEEEEEETTTCCEEE----EEEC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEEEcCCCEEEEEECCCCcEEE----EEec
Confidence            45555566666666666666655554322100   0011111    22567778888999999998886543    1111


Q ss_pred             ccc-eE--------EEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEe
Q 024245          109 NSY-HF--------CKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (270)
Q Consensus       109 ~~~-~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd  178 (270)
                      ... ..        ....+........ ....+....++..+++..-..... .......++..+++.  +.++.|..+|
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~l~~~--~~~g~l~~~d  293 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIVDGNRIYLV--DQNDRVMALT  293 (376)
T ss_dssp             CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEEETTEEEEE--ETTCCEEEEE
T ss_pred             ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceEECCEEEEE--cCCCeEEEEE
Confidence            100 00        0000000011111 112334455666665544221111 112222345566653  3478999999


Q ss_pred             CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      ..+++.+.....        ..   ........ ..    ++  .|+.++.+|.|+++|..+ ++.+.....
T Consensus       294 ~~tG~~~w~~~~--------~~---~~~~~~~~-~~----~~--~l~v~~~~g~l~~~d~~t-G~~~~~~~~  346 (376)
T 3q7m_A          294 IDGGVTLWTQSD--------LL---HRLLTSPV-LY----NG--NLVVGDSEGYLHWINVED-GRFVAQQKV  346 (376)
T ss_dssp             TTTCCEEEEECT--------TT---TSCCCCCE-EE----TT--EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             CCCCcEEEeecc--------cC---CCcccCCE-EE----CC--EEEEEeCCCeEEEEECCC-CcEEEEEec
Confidence            999998776651        10   11111111 21    23  788888999999999998 777777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.52  E-value=1.1e-05  Score=69.37  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=47.0

Q ss_pred             cEEEEEEe-CCCCEEEEecC-C----CcEEEEeCCCC-ceeEE-EeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----
Q 024245           20 SVTDVCFH-QTKPILFAGTT-G----GELRIWDTVQH-RTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----   86 (270)
Q Consensus        20 ~v~~~~~s-~~~~~l~s~~~-d----g~i~vwd~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----   86 (270)
                      .+...+|| |||++||-+.. +    ..|+++|+.++ +.+.. +.     .....+.|+|  +++.|+....|.     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Wsp--Dg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGP--DHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECS--STTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEec--CCCEEEEEEECCCCCCC
Confidence            68889999 99998774332 2    35999999988 63211 11     1134688999  988887666542     


Q ss_pred             cEEEEEccCC
Q 024245           87 TVKCWDIENG   96 (270)
Q Consensus        87 ~i~~wd~~~~   96 (270)
                      .|.++++.++
T Consensus       248 ~v~~~~lgt~  257 (751)
T 2xe4_A          248 KVWRHVMGKL  257 (751)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEECCCC
Confidence            4666666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.51  E-value=2.4e-05  Score=60.02  Aligned_cols=200  Identities=10%  Similarity=-0.049  Sum_probs=110.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      +..|..++.++.|..+|.. ++....+....  ..+.++...+  ++. |+.++.++.|..+|.. ++...    .....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~--~g~-l~vgt~~~~l~~~d~~-g~~~~----~~~~~  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--AIYATPIVSE--DGT-IYVGSNDNYLYAINPD-GTEKW----RFKTN  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECT--TSC-EEEECTTSEEEEECTT-SCEEE----EEECS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--ceeeeeEEcC--CCE-EEEEcCCCEEEEECCC-CCEeE----EEecC
Confidence            4467778888899999988 77766665444  3356666665  544 6667888899999988 54322    11111


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceee
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  186 (270)
                      .............. ..+.. +....++ .+++...........   +...++|. +++  ++.++.|..+|. +++.+.
T Consensus       176 ~~~~~~~~~d~~g~-l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          176 DAITSAASIGKDGT-IYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV--TSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             SCCCSCCEECTTCC-EEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE--EETTTEEEEECT-TSCEEE
T ss_pred             CCceeeeEEcCCCE-EEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE--EcCCCeEEEECC-CCCEeE
Confidence            11111111111111 11222 3334444 333322221111111   66777775 444  233577888874 566666


Q ss_pred             eeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      .+..        .    ......+. ..+   ++  .|..++.+|.|..+|. + ++.+..+......+.++...++|.+
T Consensus       249 ~~~~--------~----~~~~~~~~-~~~---~g--~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          249 RFKT--------G----KRIESSPV-IGN---TD--TIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             EEEC--------S----SCCCSCCE-ECT---TS--CEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             EeeC--------C----CCccccce-EcC---CC--eEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcCCCEE
Confidence            5552        1    11122232 432   34  5777888889999995 5 6666666655566777777777765


Q ss_pred             e
Q 024245          267 M  267 (270)
Q Consensus       267 l  267 (270)
                      .
T Consensus       309 ~  309 (330)
T 3hxj_A          309 Y  309 (330)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.47  E-value=0.00015  Score=61.44  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             EEEEEeCCCCEEEEecCCC-------------------cEEEEeCCCCceeEEEeecCCC-------cceEEEEEeeCCC
Q 024245           22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (270)
                      ..+++.|+..+++.++.++                   .|..+|..+++.+..++...+.       .+.....+..  +
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~  310 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--D  310 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--C
Confidence            3578888878888887765                   3999999999998887653211       2233333334  5


Q ss_pred             CC---EEEEEeCCCcEEEEEccCCccC
Q 024245           76 LN---KVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        76 ~~---~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      |+   .++.++.+|.+.++|..+++.+
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            54   6889999999999999999764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.42  E-value=7e-05  Score=61.47  Aligned_cols=223  Identities=11%  Similarity=0.020  Sum_probs=122.5

Q ss_pred             ccEEEEEE-e-CCCCEEEEec------------------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE
Q 024245           19 ASVTDVCF-H-QTKPILFAGT------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (270)
Q Consensus        19 ~~v~~~~~-s-~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (270)
                      .....+++ + |+++++++++                  .++.+.+.|..+.+....+.....   -..++++|  +|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~sp--dGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADY--EGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECS--SSSE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECC--CCCE
Confidence            45778888 5 8999988884                  346799999999888887765431   46778999  8899


Q ss_pred             EEEEeCCC---------------c-----------------------EEEEEccC--CccCCCCccceec-ccceEEEEe
Q 024245           79 VISQGRDG---------------T-----------------------VKCWDIEN--GGLSSNPSLTIKT-NSYHFCKLS  117 (270)
Q Consensus        79 l~s~~~d~---------------~-----------------------i~~wd~~~--~~~~~~~~~~~~~-~~~~~~~~~  117 (270)
                      +++.+.+.               .                       |.+.|..+  ++.   .+..++. ...+...++
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~---~~~~Ipvg~~PhGv~~s  285 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL---FTRYIPIANNPHGCNMA  285 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS---SEEEEEEESSCCCEEEC
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCce---eEEEEecCCCceEEEEc
Confidence            88877553               2                       44444443  111   0111111 111222233


Q ss_pred             eccCCccceecCCCCceEEEeccCc------------eeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCC--
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGE------------TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNT--  181 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~--  181 (270)
                      .++...............+++.+.+            .......+...  ++|+|+| ++++ +...|+.|.+||+.+  
T Consensus       286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~-t~~ldsqV~kwdi~~a~  363 (595)
T 1fwx_A          286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYT-SLFLDSQVVKWNIEDAI  363 (595)
T ss_dssp             TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEE-EETTTTEEEEEEHHHHH
T ss_pred             CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEE-EEecCCcEEEEEhhHhh
Confidence            3332222233333445556776442            22222333333  9999999 6665 566799999999976  


Q ss_pred             --------cceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceEEEEecC-C-CcE-----------EEEEcC
Q 024245          182 --------AERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYE-D-GSI-----------LVWDIR  239 (270)
Q Consensus       182 --------~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~l~~~~~-d-g~i-----------~vwd~~  239 (270)
                              .+.+.++..        |-.+ ......... ++|   ||+ +|++... . ..+           .++|+.
T Consensus       364 ~~~~g~~~~~vi~kidV--------~yqpGh~~~~~g~t-~~~---DGk-~l~~~Nk~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          364 RAYAGEKVDPIKDKLDV--------HYQPGHLKTVMGET-LDA---TND-WLVCLSKFSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             HHHHTCSCCCEEEEEEC--------SSCEEEEEETTTTS-TTC---CSS-EEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred             hhhcccccceeEEEeec--------ccccccceeccceE-eCC---CCC-EEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence                    345555552        2110 011222333 677   576 5555532 2 233           889995


Q ss_pred             CCCcc--eeeeeccCCCeeEEEeecCCCc
Q 024245          240 NPGIP--LTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       240 ~~~~~--~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      . ++.  +..... ......+.+.|..++
T Consensus       431 ~-~~m~lv~d~p~-~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          431 G-DKMVLVHDGPT-FAEPHDAIAVHPSIL  457 (595)
T ss_dssp             S-SSCEEEEEEEE-SSCCCCEEEECTTTT
T ss_pred             C-CcEEEEEEEcC-CCCCCceEEccHHHc
Confidence            4 442  222222 234455666665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.37  E-value=3.6e-06  Score=65.73  Aligned_cols=104  Identities=10%  Similarity=-0.143  Sum_probs=71.3

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEccCCccCCCCccceecc-
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN-  109 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~-  109 (270)
                      .|.+.|..+++.+.++....  .+  .+.++|  ++++++.+.          .++.|.+||+.+++...    .+... 
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~----~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA----DIELPD  116 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--TC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE----EEEETT
T ss_pred             eEEEEECCCCeEEEEEeCCC--CC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE----EEECCC
Confidence            78899999999999998665  45  799999  999888775          37899999999986543    22211 


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEE--EeCCCcceeee
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTR  187 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~i--wd~~~~~~~~~  187 (270)
                      .....                                .......++++|||++++++....+..+.+  +|+.+   +.+
T Consensus       117 ~~~~~--------------------------------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~  161 (368)
T 1mda_H          117 APRFS--------------------------------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL  161 (368)
T ss_dssp             SCSCC--------------------------------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred             ccccc--------------------------------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence            00000                                000011177999999888754333467888  99987   445


Q ss_pred             ec
Q 024245          188 LH  189 (270)
Q Consensus       188 ~~  189 (270)
                      +.
T Consensus       162 i~  163 (368)
T 1mda_H          162 TK  163 (368)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.36  E-value=4.4e-05  Score=59.90  Aligned_cols=185  Identities=10%  Similarity=0.074  Sum_probs=102.1

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      +..++.++.++.|..+|.++++.+..+.....  ....... .  + ..++.++.++.|..+|..+++...    .....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~-~--~-~~v~v~~~~g~l~~~d~~tG~~~W----~~~~~  172 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVV-S--D-GLVLIHTSNGQLQALNEADGAVKW----TVNLD  172 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEE-E--T-TEEEEECTTSEEEEEETTTCCEEE----EEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEE-E--C-CEEEEEcCCCeEEEEECCCCcEEE----EEeCC
Confidence            45677788899999999999998877765431  1112222 2  3 578888899999999999887543    11111


Q ss_pred             cceE-----EEEeeccCCccceecCCCCceEEEeccCceeeeccCCCC----------CeEecC--CCCeEEEEecCCCc
Q 024245          110 SYHF-----CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS----------KDDVPA--EGPKYMAVAGEQLS  172 (270)
Q Consensus       110 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~--~~~~~~~~~~~~d~  172 (270)
                      ....     ...... ..........+....++..+++..-.......          .+...|  .+..+++  ++.++
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~--~~~~g  249 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA--LAYNG  249 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE--ECTTS
T ss_pred             CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE--EecCc
Confidence            0000     000001 01111111122334455555543322111100          000111  2344554  34578


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      .+..+|..+++.+.....             . ....+. ..    ++  .++.++.++.|..+|..+ ++.+....
T Consensus       250 ~l~~~d~~tG~~~w~~~~-------------~-~~~~~~-~~----~~--~l~~~~~~g~l~~~d~~t-G~~~w~~~  304 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKREL-------------G-SVNDFI-VD----GN--RIYLVDQNDRVMALTIDG-GVTLWTQS  304 (376)
T ss_dssp             CEEEEETTTCCEEEEECC-------------C-CEEEEE-EE----TT--EEEEEETTCCEEEEETTT-CCEEEEEC
T ss_pred             EEEEEECCCCcEEeeccC-------------C-CCCCce-EE----CC--EEEEEcCCCeEEEEECCC-CcEEEeec
Confidence            999999999998877652             1 112222 22    23  677778899999999998 66665554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.36  E-value=0.00021  Score=54.80  Aligned_cols=189  Identities=10%  Similarity=-0.023  Sum_probs=103.5

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC------------------CCcceEEEEEeeCCCCCEEE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------------------AAHGIVSVATGPSIGLNKVI   80 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~l~   80 (270)
                      ....+++|.++|++++++..++.|..||..+++.. .+....                  ....+..+++.+  ++..|+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence            45677899999987888888999999998765433 232110                  002478899986  445566


Q ss_pred             EEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecC-C
Q 024245           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA-E  159 (270)
Q Consensus        81 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~  159 (270)
                      .+...+.|..+|..++...     .+.......                                 .+.....+++.+ +
T Consensus        96 v~d~~~~i~~~d~~~g~~~-----~~~~~~~~~---------------------------------~~~~p~~i~~d~~~  137 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHAT-----QLATSVDGV---------------------------------PFKWLYAVTVDQRT  137 (322)
T ss_dssp             EEETTTEEEEECTTCEECE-----EEESEETTE---------------------------------ECSCEEEEEECTTT
T ss_pred             EEECCCCEEEEeCCCCEEE-----EecccCCCC---------------------------------cccccceEEEecCC
Confidence            5655555778876654321     110000000                                 000000045677 7


Q ss_pred             CCeEEEEecC----------------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          160 GPKYMAVAGE----------------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       160 ~~~~~~~~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      |. ++++...                .++.|..||..+++.......             ......++ |+|+   |+.+
T Consensus       138 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~p~gia-~~~d---g~~l  199 (322)
T 2fp8_A          138 GI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-------------LHVPGGAE-VSAD---SSFV  199 (322)
T ss_dssp             CC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-------------ESCCCEEE-ECTT---SSEE
T ss_pred             CE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-------------CccCcceE-ECCC---CCEE
Confidence            75 4433321                247788888876654322220             11234455 8884   5424


Q ss_pred             EEEecCCCcEEEEEcCCCC-cceeeeeccCCCeeEEEeecCCCce
Q 024245          224 VLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       224 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +++-...+.|.+|++.... .....+....+ ...++++++|.+.
T Consensus       200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFW  243 (322)
T ss_dssp             EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEE
T ss_pred             EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEE
Confidence            5555667899999987521 11122211223 7778888887653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.35  E-value=5.3e-05  Score=64.33  Aligned_cols=199  Identities=15%  Similarity=0.010  Sum_probs=111.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc---------ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---------GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +..|+.++.++.|.-+|..+|+.+..+.......         ....+++    .+..|+.++.|+.|..+|..+++...
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            4467777778999999999999988876543110         0122333    23688888999999999999987643


Q ss_pred             CCccceecc-c----ceEEEEeeccCCccceecC-------CCCceEEEeccCceeeecc--------------------
Q 024245          101 NPSLTIKTN-S----YHFCKLSLVKEPYANAKQA-------NEPKDCYEREVGETVDTDS--------------------  148 (270)
Q Consensus       101 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--------------------  148 (270)
                          ..... .    .... ..+.......+...       .+....+|..+++.+-...                    
T Consensus       153 ----~~~~~~~~~~~~~~~-~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~  227 (677)
T 1kb0_A          153 ----HQNTFEGQKGSLTIT-GAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR  227 (677)
T ss_dssp             ----EEETTTTCCSSCBCC-SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             ----eecCCcCcCcCcccc-cCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence                22111 0    0000 00000001111111       1233445555554331110                    


Q ss_pred             ------------CCC---CCeEecCCCCeEEEEecCC-------------C----ceEEEEeCCCcceeeeeccCcCCCC
Q 024245          149 ------------LCD---SKDDVPAEGPKYMAVAGEQ-------------L----SEVEIWDLNTAERCTRLHQNSCGGS  196 (270)
Q Consensus       149 ------------~~~---~~~~~s~~~~~~~~~~~~~-------------d----~~i~iwd~~~~~~~~~~~~~~~~~~  196 (270)
                                  .+.   ..+++.|++..+++.++..             |    +.|..+|..+|+.+..++..     
T Consensus       228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-----  302 (677)
T 1kb0_A          228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-----  302 (677)
T ss_dssp             TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-----
T ss_pred             cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-----
Confidence                        000   0167788888777644321             0    25999999999998887731     


Q ss_pred             CCcccC----CCceeeeeeecCCCCCCCc--eEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          197 PNFSSK----GRGMCMAVQAYLPSKSQGF--VNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       197 ~~h~~~----~~~~~~~~~~~~p~~~~g~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                       .|...    ....+. +. ...   +|+  ..++.++.+|.|+++|.++ ++++..++
T Consensus       303 -~~d~wd~~~~~~p~l-~~-~~~---dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~  354 (677)
T 1kb0_A          303 -PGDNWDYTSTQPMIL-AD-IKI---AGKPRKVILHAPKNGFFFVLDRTN-GKFISAKN  354 (677)
T ss_dssp             -TTCCSCCCCCSCCEE-EE-EEE---TTEEEEEEEECCTTSEEEEEETTT-CCEEEEEE
T ss_pred             -CCcccccccCCCcEE-Ee-ccc---CCcEeeEEEEECCCCEEEEEECCC-CCEecccc
Confidence             12110    011111 11 111   341  2899999999999999999 77776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.33  E-value=8.2e-05  Score=54.69  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC
Q 024245           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (270)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (270)
                      +.+.++ .|....-...+.|+.  + .+.++.+.+|.|+++|+++++....  . +......                  
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~--~-~Ly~stG~~g~v~~iD~~Tgkv~~~--~-l~~~~Fg------------------   98 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ--G-HFFESTGHQGTLRQLSLESAQPVWM--E-RLGNIFA------------------   98 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEETTTTEEEECCSSCSSCSEE--E-ECTTCCE------------------
T ss_pred             EEEEEE-cCCCccccceEEEEC--C-EEEEEcCCCCEEEEEECCCCcEEeE--E-CCCCcce------------------
Confidence            344555 344445568899875  3 6677888899999999999986541  1 1111100                  


Q ss_pred             CCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeee
Q 024245          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (270)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  210 (270)
                                             ..+.+++..+++++. .++.+.+||..+.+.+.++..             ...-+.+
T Consensus        99 -----------------------eGit~~g~~Ly~ltw-~~~~v~V~D~~Tl~~~~ti~~-------------~~eGwGL  141 (268)
T 3nok_A           99 -----------------------EGLASDGERLYQLTW-TEGLLFTWSGMPPQRERTTRY-------------SGEGWGL  141 (268)
T ss_dssp             -----------------------EEEEECSSCEEEEES-SSCEEEEEETTTTEEEEEEEC-------------SSCCCCE
T ss_pred             -----------------------eEEEEeCCEEEEEEc-cCCEEEEEECCcCcEEEEEeC-------------CCceeEE
Confidence                                   012334556666544 589999999999999999983             1122343


Q ss_pred             eecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----CCeeEEEee
Q 024245          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPGLECSMW  261 (270)
Q Consensus       211 ~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~s  261 (270)
                      + +     |++ .|+.+..++.|.++|..+ .+.+..+....     ..++.+.|.
T Consensus       142 t-~-----Dg~-~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          142 C-Y-----WNG-KLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             E-E-----ETT-EEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE
T ss_pred             e-c-----CCC-EEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe
Confidence            3 3     344 455555688999999998 67666665321     234556665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.32  E-value=0.00038  Score=57.98  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      +|.|..||+.+++.+.+...       +.  +..+....   -.    ++  +++.|+.||.++.||.++ ++.+..++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~-------~~--~~~~g~~~---ta----gg--lvf~g~~dg~l~A~D~~t-G~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKE-------HL--PLWAGVLA---TA----GN--LVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-------SS--CCCSCCEE---ET----TT--EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecC-------CC--CCcccceE---eC----CC--EEEEECCCCcEEEEECCC-CCEEEEecC
Confidence            68999999999998877763       11  11111111   11    23  677799999999999999 888888875


Q ss_pred             cCCCe-eEEEeecCCCc
Q 024245          251 HLEPG-LECSMWRNPIT  266 (270)
Q Consensus       251 ~~~~v-~~~~~s~~g~~  266 (270)
                      ..... .-+.|..+|+.
T Consensus       526 ~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SSCCCSCCEEEEETTEE
T ss_pred             CCCcccCceEEEECCEE
Confidence            43322 22667777763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.30  E-value=0.0007  Score=53.37  Aligned_cols=215  Identities=7%  Similarity=-0.047  Sum_probs=114.4

Q ss_pred             ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+..++|.+. +.++++-...+.|..+++........+....  .....+++.+  .+. +.++-...+.|.+.++...
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC--SCCCCEEEET--TTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC--CCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCC
Confidence            45778999974 4455555567889999988655443333222  3356788887  444 4456566778888887654


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccC-ceeeecc-CC---CCCeEecCCCCeEEEEecCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVG-ETVDTDS-LC---DSKDDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~---~~~~~~s~~~~~~~~~~~~~  170 (270)
                      ....    .+.........+.+.......+...... ..++.+... ....... .+   ...++++|++..++++- ..
T Consensus       192 ~~~~----l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~  266 (386)
T 3v65_B          192 HRKV----LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AK  266 (386)
T ss_dssp             SCEE----EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TT
T ss_pred             ceEE----eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CC
Confidence            3211    1111112223333332222222222222 333332211 1111111 11   11199998888887754 44


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .+.|..+|+........+..        .    ......++ +.    ++. ++++-...+.|..+|..+ ++....+..
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~--------~----~~~P~gia-v~----~~~-ly~td~~~~~V~~~~~~~-G~~~~~i~~  327 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVISQ--------G----LPHPFAIT-VF----EDS-LYWTDWHTKSINSANKFT-GKNQEIIRN  327 (386)
T ss_dssp             TTEEEEECTTSCSCEEEECS--------S----CSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEEC
T ss_pred             CCEEEEEeCCCCeeEEEEEC--------C----CCCceEEE-EE----CCE-EEEeeCCCCeEEEEECCC-CcceEEEcc
Confidence            68899999874332222221        1    12334454 42    344 677777888999999766 565666654


Q ss_pred             cCCCeeEEEee
Q 024245          251 HLEPGLECSMW  261 (270)
Q Consensus       251 ~~~~v~~~~~s  261 (270)
                      ....+.+|++.
T Consensus       328 ~~~~p~gi~v~  338 (386)
T 3v65_B          328 KLHFPMDIHTL  338 (386)
T ss_dssp             SCSCCCCEEEE
T ss_pred             CCCCCceEEEE
Confidence            44455666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.30  E-value=9.5e-05  Score=54.79  Aligned_cols=167  Identities=5%  Similarity=-0.122  Sum_probs=100.9

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCC
Q 024245           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP  102 (270)
Q Consensus        23 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  102 (270)
                      .+++.. +++.++.-.++.+.++|..+.+.+..+..... .   ...+++  +++.++.+..++.|.++|..+.+...  
T Consensus        70 Gi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~-~---g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~--  140 (266)
T 2iwa_A           70 GLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK-D---GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIK--  140 (266)
T ss_dssp             EEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSS-S---CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEE--
T ss_pred             EEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCC-C---eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEE--
Confidence            344442 23445555688999999999999988865411 2   234566  77777777778899999998876433  


Q ss_pred             ccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCc
Q 024245          103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (270)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~  182 (270)
                        .+........ +...                                ..+.|. +| .+++. ...++.|.+.|..++
T Consensus       141 --~I~Vg~~~~p-~~~~--------------------------------nele~~-dg-~lyvn-~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          141 --KHNVKYNGHR-VIRL--------------------------------NELEYI-NG-EVWAN-IWQTDCIARISAKDG  182 (266)
T ss_dssp             --EEECEETTEE-CCCE--------------------------------EEEEEE-TT-EEEEE-ETTSSEEEEEETTTC
T ss_pred             --EEEECCCCcc-cccc--------------------------------eeEEEE-CC-EEEEe-cCCCCeEEEEECCCC
Confidence              2211100000 0000                                003344 45 56654 444689999999999


Q ss_pred             ceeeeeccCcCCCCC-CcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          183 ERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.+..+....+.... ............++ |+|+   ++.+++++...++|++.++..
T Consensus       183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa-~~~~---~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIA-WDQE---NKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CEEEEEECHHHHHHHHHTTCTTCCCEEEEE-EETT---TTEEEEEETTCSEEEEEEEEE
T ss_pred             cEEEEEECCCcccccccccccccCceEEEE-EcCC---CCEEEEECCCCCeEEEEEEec
Confidence            998888731000000 00001123456777 9985   434899999999999999876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.29  E-value=0.00075  Score=53.22  Aligned_cols=219  Identities=5%  Similarity=-0.112  Sum_probs=111.0

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  100 (270)
                      .|.+..+.+ +|+.+.. ..|+..++........+...   ..+..++|.+  .++.|+ +-...+.|..+++.......
T Consensus        80 ~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccccc-eeEeecC-ccceeeccCCCcEEEEecCC---CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            344444433 4444433 46888888766554444332   4478999997  545554 55567889999987654211


Q ss_pred             CCccceecccceEEEEeeccCCccceecCCCCceEEEecc-CceeeeccC-CCCC---eEecCCCCeEEEEecCCCceEE
Q 024245          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSL-CDSK---DDVPAEGPKYMAVAGEQLSEVE  175 (270)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~~~s~~~~~~~~~~~~~d~~i~  175 (270)
                        +  +.........+.+.+.....+........++.+.. +........ +-..   +++.|.+..++++-....+.|.
T Consensus       153 --~--~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          153 --V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             --E--ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             --E--EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence              1  11111111122233222222222222223322221 111111111 1111   8899888777765433237888


Q ss_pred             EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG  255 (270)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v  255 (270)
                      .+++.. .....+..       .    .......++ ++|+  +++ ++++-...+.|..+|+.. ......+.......
T Consensus       229 r~~~dG-~~~~~~~~-------~----~~~~PnGla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P  291 (386)
T 3v65_B          229 ASSMDG-SGRRIIAD-------T----HLFWPNGLT-IDYA--GRR-MYWVDAKHHVIERANLDG-SHRKAVISQGLPHP  291 (386)
T ss_dssp             EEETTS-CSCEEEEC-------S----SCSCEEEEE-EEGG--GTE-EEEEETTTTEEEEECTTS-CSCEEEECSSCSSE
T ss_pred             EEeCCC-CCcEEEEE-------C----CCCCeeeEE-EeCC--CCE-EEEEECCCCEEEEEeCCC-CeeEEEEECCCCCc
Confidence            888863 33333321       0    122455676 8875  444 666666778899999874 33333333233456


Q ss_pred             eEEEeecCCCcee
Q 024245          256 LECSMWRNPITMS  268 (270)
Q Consensus       256 ~~~~~s~~g~~ls  268 (270)
                      ..|++..+..|++
T Consensus       292 ~giav~~~~ly~t  304 (386)
T 3v65_B          292 FAITVFEDSLYWT  304 (386)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             eEEEEECCEEEEe
Confidence            7777755555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.23  E-value=0.0013  Score=54.66  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=49.9

Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      .++.|..||+.+++.+.++..       +.  ...+..     ....  ++  .++.++.||.|+.||.++ ++.+..++
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~-------~~--~~~~~~-----~~t~--gg--~v~~g~~dg~l~a~D~~t-G~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWE-------KF--AAWGGT-----LYTK--GG--LVWYATLDGYLKALDNKD-GKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-------SS--CCCSBC-----EEET--TT--EEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecC-------CC--Ccccee-----EEEC--CC--EEEEEcCCCeEEEEECCC-CCEEEEEe
Confidence            358999999999998888763       11  111111     1111  23  677789999999999999 88888877


Q ss_pred             ccCCC-eeEEEeecCCCc
Q 024245          250 VHLEP-GLECSMWRNPIT  266 (270)
Q Consensus       250 ~~~~~-v~~~~~s~~g~~  266 (270)
                      ..... -.-+.+..+|++
T Consensus       503 ~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          503 MPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CSSCCCSCCEEEEETTEE
T ss_pred             CCCCcEeeeEEEEECCEE
Confidence            43221 122445567654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.23  E-value=0.00022  Score=51.86  Aligned_cols=131  Identities=18%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec
Q 024245           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (270)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (270)
                      +.+.++ .|....-...+.|++  + .+..+.+.+|  .|+.+|+.+++...  ...+......                
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~--~~~l~~~~fg----------------   67 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQ--RAEVPPPYFG----------------   67 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEE--EEECCTTCCE----------------
T ss_pred             EEEEEc-CCCCccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEE--EEeCCCCcce----------------
Confidence            345556 455556788999986  4 5566766654  89999999997644  1111111100                


Q ss_pred             CCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceee
Q 024245          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (270)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (270)
                                               ..+.+.+..++..+. .++.+.+||..+.+.+.++..             ...-+
T Consensus        68 -------------------------eGi~~~~~~ly~ltw-~~~~v~v~D~~tl~~~~ti~~-------------~~~Gw  108 (243)
T 3mbr_X           68 -------------------------AGIVAWRDRLIQLTW-RNHEGFVYDLATLTPRARFRY-------------PGEGW  108 (243)
T ss_dssp             -------------------------EEEEEETTEEEEEES-SSSEEEEEETTTTEEEEEEEC-------------SSCCC
T ss_pred             -------------------------eEEEEeCCEEEEEEe-eCCEEEEEECCcCcEEEEEeC-------------CCCce
Confidence                                     112233456666544 579999999999999999983             11224


Q ss_pred             eeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .++ +     ++. .|+.+..++.|.++|..+ .+.+..+..
T Consensus       109 glt-~-----dg~-~L~vSdgs~~l~~iDp~t-~~~~~~I~V  142 (243)
T 3mbr_X          109 ALT-S-----DDS-HLYMSDGTAVIRKLDPDT-LQQVGSIKV  142 (243)
T ss_dssp             EEE-E-----CSS-CEEEECSSSEEEEECTTT-CCEEEEEEC
T ss_pred             EEe-e-----CCC-EEEEECCCCeEEEEeCCC-CeEEEEEEE
Confidence            443 3     233 344444588999999998 666666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.23  E-value=0.00093  Score=51.89  Aligned_cols=222  Identities=4%  Similarity=-0.131  Sum_probs=113.3

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG   97 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~   97 (270)
                      +..+|.+..+++ +|+.+.. ..|+..++........+...   ..+.+++|.+  .++.|+ +-...+.|..+++....
T Consensus        34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeecCC---CceEEEEEec--cccEEEEEeccCCceEEEecCCCC
Confidence            344565555543 4444333 45888888765444333332   4478999997  545555 55567889999987654


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCceeeeccCC-C--CCeEecCCCCeEEEEecCCCc
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDTDSLC-D--SKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~--~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      ...    ...........+.+++.....+........+  .+............. .  ..+++.|.+..++.+-....+
T Consensus       107 ~~~----~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          107 VEE----VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             CEE----EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             ceE----EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence            211    1111111112233333222222222222222  333222111111111 1  118999977777764433227


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  252 (270)
                      .|..+++. +.....+..        .   .......++ ++|.  +++ +.++-...+.|..+|+.. ......+....
T Consensus       183 ~I~r~~~d-G~~~~~~~~--------~---~~~~PnGla-~d~~--~~~-lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~  245 (349)
T 3v64_C          183 RIEASSMD-GSGRRIIAD--------T---HLFWPNGLT-IDYA--GRR-MYWVDAKHHVIERANLDG-SHRKAVISQGL  245 (349)
T ss_dssp             EEEEEETT-SCSCEESCC--------S---SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEECSSC
T ss_pred             EEEEEeCC-CCCcEEEEE--------C---CCCCcceEE-EeCC--CCE-EEEEECCCCEEEEEeCCC-CceEEEEeCCC
Confidence            88888876 333333321        0   122456676 8875  444 566666778899999874 33222333333


Q ss_pred             CCeeEEEeecCCCcee
Q 024245          253 EPGLECSMWRNPITMS  268 (270)
Q Consensus       253 ~~v~~~~~s~~g~~ls  268 (270)
                      .....|++..+..|++
T Consensus       246 ~~P~giav~~~~ly~t  261 (349)
T 3v64_C          246 PHPFAITVFEDSLYWT  261 (349)
T ss_dssp             SSEEEEEEETTEEEEE
T ss_pred             CCceEEEEECCEEEEe
Confidence            4567777755544444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.23  E-value=2.3e-05  Score=60.12  Aligned_cols=203  Identities=8%  Similarity=-0.011  Sum_probs=104.2

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      .+.....++ .|..++.++.|..|| .+++....+....  ..+.++...+  ++ .|..++.+  |..+|. +++... 
T Consensus        23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~-   91 (330)
T 3hxj_A           23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE--IIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKW-   91 (330)
T ss_dssp             CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG--EEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGG-
T ss_pred             cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC--CcccceEEec--CC-cEEEecCc--EEEECC-CCcEEE-
Confidence            334444555 566777888899999 8887766554433  3356666665  54 45555544  888886 444322 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceEEEEe
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWD  178 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd  178 (270)
                       ...........  .... ..........+....++.. ++...........   +...+++. +++  ++.++.|..+|
T Consensus        92 -~~~~~~~~~~~--~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v--gt~~~~l~~~d  163 (330)
T 3hxj_A           92 -RFDTKKAIVSD--FTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYV--GSNDNYLYAIN  163 (330)
T ss_dssp             -GSCC-----CC--EEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTSEEEEEC
T ss_pred             -EEECCCCcccC--ceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEE--EcCCCEEEEEC
Confidence             11111111111  1111 1111111112223334444 3322111111111   55666775 443  44568999999


Q ss_pred             CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC  258 (270)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  258 (270)
                      .. ++.+..+..        .    ...+.++. ..+   ++.  |..++  +.|..+| .+ ++....+......+.++
T Consensus       164 ~~-g~~~~~~~~--------~----~~~~~~~~-~d~---~g~--l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~  220 (330)
T 3hxj_A          164 PD-GTEKWRFKT--------N----DAITSAAS-IGK---DGT--IYFGS--DKVYAIN-PD-GTEKWNFYAGYWTVTRP  220 (330)
T ss_dssp             TT-SCEEEEEEC--------S----SCCCSCCE-ECT---TCC--EEEES--SSEEEEC-TT-SCEEEEECCSSCCCSCC
T ss_pred             CC-CCEeEEEec--------C----CCceeeeE-EcC---CCE--EEEEe--CEEEEEC-CC-CcEEEEEccCCcceece
Confidence            98 777666652        1    11233333 433   454  44444  7889999 55 56565555545567777


Q ss_pred             EeecCCCc
Q 024245          259 SMWRNPIT  266 (270)
Q Consensus       259 ~~s~~g~~  266 (270)
                      ...++|.+
T Consensus       221 ~~~~~g~l  228 (330)
T 3hxj_A          221 AISEDGTI  228 (330)
T ss_dssp             EECTTSCE
T ss_pred             EECCCCeE
Confidence            77777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.17  E-value=0.0019  Score=53.98  Aligned_cols=78  Identities=19%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      .+|.|..||+.+++.+.+...       +.  +..+.....        .+. +++.++.||.++.||.++ ++.+..++
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-------~~--~~~~g~~~t--------agg-~vf~gt~dg~l~A~D~~t-G~~lW~~~  511 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-------RF--AVWGGTMAT--------AGD-LVFYGTLDGYLKARDSDT-GDLLWKFK  511 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-------SS--CCCSBCEEE--------TTT-EEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecC-------CC--CccCcceEe--------cCC-EEEEECCCCeEEEEECCC-CCEEEEee
Confidence            358999999999998887763       11  111111111        122 677799999999999999 88888876


Q ss_pred             ccCCCe-eEEEeecCCCc
Q 024245          250 VHLEPG-LECSMWRNPIT  266 (270)
Q Consensus       250 ~~~~~v-~~~~~s~~g~~  266 (270)
                      .....+ .-+.+..+|+.
T Consensus       512 l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          512 IPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CSSCCCSCCEEEEETTEE
T ss_pred             CCCCcEeccEEEEeCCEE
Confidence            433221 23556667753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.17  E-value=0.00022  Score=52.43  Aligned_cols=144  Identities=14%  Similarity=0.096  Sum_probs=87.7

Q ss_pred             eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC
Q 024245           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (270)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (270)
                      .++++. |....-...+.|+.  + .+..+.+.+|  .|+++|+.+++...    ........+.               
T Consensus        33 vv~~~p-hd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~~~~Fg---------------   89 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYRN--G-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELGKRYFG---------------   89 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEET--T-EEEEEEEETTEEEEEEECTTTCCEEE----EEECCTTCCE---------------
T ss_pred             EEEEec-CCCCcccceEEEEC--C-EEEEECCCCCCceEEEEECCCCcEEE----EEecCCccce---------------
Confidence            455563 44435568888874  3 6666777766  89999999997644    2211110000               


Q ss_pred             CCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeee
Q 024245          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (270)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (270)
                                              ..+.+++..+++++. .++.+.+||..+.+.+.++..             ...-+.
T Consensus        90 ------------------------eGit~~g~~ly~ltw-~~~~v~v~D~~t~~~~~ti~~-------------~~eG~g  131 (262)
T 3nol_A           90 ------------------------EGISDWKDKIVGLTW-KNGLGFVWNIRNLRQVRSFNY-------------DGEGWG  131 (262)
T ss_dssp             ------------------------EEEEEETTEEEEEES-SSSEEEEEETTTCCEEEEEEC-------------SSCCCC
T ss_pred             ------------------------eEEEEeCCEEEEEEe-eCCEEEEEECccCcEEEEEEC-------------CCCceE
Confidence                                    113344567776544 579999999999999999983             112233


Q ss_pred             eeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccC-----CCeeEEEeecCCC
Q 024245          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPGLECSMWRNPI  265 (270)
Q Consensus       210 ~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~g~  265 (270)
                      ++ +     |++ .|+....++.|.++|..+ .+.+..+....     ..++.+.|. +|+
T Consensus       132 lt-~-----dg~-~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          132 LT-H-----NDQ-YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EE-E-----CSS-CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             Ee-c-----CCC-EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCE
Confidence            33 3     344 444444578899999998 66666655321     234456665 443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.08  E-value=1.6e-06  Score=68.12  Aligned_cols=143  Identities=13%  Similarity=0.029  Sum_probs=65.9

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcccee--cCCCCceEEEeccCceeeeccCCCC
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDS  152 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  152 (270)
                      ++..+++++.|+.|..||..+++...    .............  . ......  ...+....||..+++.+... ..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W----~~~~~~~~s~p~~--~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW----TLKEDPVLQVPTH--V-EEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE----EEECCCSCCCC--------CCEEECTTTCCEEEC-----CCSEEC-SCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE----EecCCCceecceE--c-CCCEEEEeCCCCEEEEEECCCCceeeee-eccC
Confidence            45889999999999999999997654    2222111100000  0 111111  23444555676665543211 1111


Q ss_pred             C--eEecC---CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          153 K--DDVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       153 ~--~~~s~---~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      .  +..+|   .+..++  +++.|+.|+.||..+|+.+.++..        +.        ... ++|.   +. .++++
T Consensus        80 ~~~~~~sp~~~~~~~v~--~g~~dg~v~a~D~~tG~~~w~~~~--------~~--------~~~-~~p~---~~-~v~~~  136 (369)
T 2hz6_A           80 PELVQASPCRSSDGILY--MGKKQDIWYVIDLLTGEKQQTLSS--------AF--------ADS-LSPS---TS-LLYLG  136 (369)
T ss_dssp             HHHHTTCSCC-----CC--CCEEEEEEEEECCC-------------------------------------------EEEE
T ss_pred             ccccccCceEecCCEEE--EEeCCCEEEEEECCCCcEEEEecC--------CC--------ccc-cccc---CC-EEEEE
Confidence            1  11111   233333  466689999999999999888772        21        122 5563   33 78888


Q ss_pred             cCCCcEEEEEcCCCCcceeeee
Q 024245          228 YEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      +.|+.|+.||.++ ++.+..+.
T Consensus       137 ~~dg~v~a~d~~t-G~~~W~~~  157 (369)
T 2hz6_A          137 RTEYTITMYDTKT-RELRWNAT  157 (369)
T ss_dssp             EEEEEEECCCSSS-SSCCCEEE
T ss_pred             ecCCEEEEEECCC-CCEEEeEe
Confidence            9999999999998 66665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=0.0002  Score=60.95  Aligned_cols=151  Identities=9%  Similarity=0.021  Sum_probs=76.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCC--------------------------C-----------cceEEEEEeeCC
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSA--------------------------A-----------HGIVSVATGPSI   74 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------~-----------~~v~~~~~~~~~   74 (270)
                      .++.++.+|.++++|..+|+.+........                          .           ..-..++++|  
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp--  398 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP--  398 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET--
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC--
Confidence            788999999999999999988754322110                          0           0011367888  


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCC-ccc-eec--CCCCceEEEeccCceeeeccCC
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YAN-AKQ--ANEPKDCYEREVGETVDTDSLC  150 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~  150 (270)
                      +..++++...+....++................. ...   +...... ... ...  ..+....||+.+++.+-....+
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~  474 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL-GLR---TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV  474 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC-SSE---ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCCEEEEeccccceeeeecccccccccccccccc-Ccc---ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence            7778887776665555544331000000000000 000   0000000 000 000  0122334555555432211111


Q ss_pred             CCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          151 DSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       151 ~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      ...  ..++..+..++  .++.|+.++.||.++|+.+.++..
T Consensus       475 ~~~~~g~~~tagglvf--~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVF--EGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             SSCCCCEEEETTTEEE--EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCccCccceECCCEEE--EECCCCcEEEEECCCCccceeeeC
Confidence            111  34555665444  356799999999999999998874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.02  E-value=0.0026  Score=49.37  Aligned_cols=216  Identities=7%  Similarity=-0.055  Sum_probs=114.1

Q ss_pred             ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ..+..++|++.+. ++++-...+.|..+++........+....  .....+++.+. ++++.++-...+.|.+.++....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCS
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC--CCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCc
Confidence            3467899997544 45555567889999987655443333222  33578888872 33444566667889999987543


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEEeccC-ceeeeccC-CC---CCeEecCCCCeEEEEecCCC
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVG-ETVDTDSL-CD---SKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~---~~~~~s~~~~~~~~~~~~~d  171 (270)
                      ...    ...........+.+.......+...... ..++.+... ........ +-   ..++++|++..++++- ...
T Consensus       150 ~~~----l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~  224 (349)
T 3v64_C          150 RKV----LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKH  224 (349)
T ss_dssp             CEE----EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-TTT
T ss_pred             eEE----EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-CCC
Confidence            211    1111112223333332222222222222 333333211 11111111 11   1199999888887754 346


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      +.|..+|+........+..        .    ......++ +.    ++. ++++-...+.|..+|..+ ++....+...
T Consensus       225 ~~I~~~~~dG~~~~~~~~~--------~----~~~P~gia-v~----~~~-ly~td~~~~~V~~~~~~~-G~~~~~i~~~  285 (349)
T 3v64_C          225 HVIERANLDGSHRKAVISQ--------G----LPHPFAIT-VF----EDS-LYWTDWHTKSINSANKFT-GKNQEIIRNK  285 (349)
T ss_dssp             TEEEEEETTSCSCEEEECS--------S----CSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEECS
T ss_pred             CEEEEEeCCCCceEEEEeC--------C----CCCceEEE-EE----CCE-EEEecCCCCeEEEEEccC-CCccEEeccC
Confidence            8899999874332222221        1    12334454 42    344 667777788899988666 5555555543


Q ss_pred             CCCeeEEEee
Q 024245          252 LEPGLECSMW  261 (270)
Q Consensus       252 ~~~v~~~~~s  261 (270)
                      ...+.+|++.
T Consensus       286 ~~~p~gi~v~  295 (349)
T 3v64_C          286 LHFPMDIHTL  295 (349)
T ss_dssp             CSCCCCEEEE
T ss_pred             CCCCceEEEE
Confidence            4445566553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.98  E-value=0.0024  Score=47.42  Aligned_cols=204  Identities=7%  Similarity=-0.058  Sum_probs=103.0

Q ss_pred             CEEEEecCCCcEEEEeCCCCcee-----EEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCcc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSL  104 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~  104 (270)
                      ++|+.+.. +.|+.+++......     ..+....  ..+..++|++  +++.|+ +-..++.|..+++.......    
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~--~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~----   72 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPA--KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT----   72 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEE--EEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE----
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCC--CcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEE----
Confidence            34555443 47888888754321     1222222  3478999998  655555 55567899999987654211    


Q ss_pred             ceecccceEEEEeeccCCccceecCCC--CceEEEeccCceeeeccCC-CCC--eEecCCCCeEEEEecCC-CceEEEEe
Q 024245          105 TIKTNSYHFCKLSLVKEPYANAKQANE--PKDCYEREVGETVDTDSLC-DSK--DDVPAEGPKYMAVAGEQ-LSEVEIWD  178 (270)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~~~~~~-d~~i~iwd  178 (270)
                      ...........+.+.......+.....  .+..++............+ ...  ++++|++.+++++.... .+.|..++
T Consensus        73 ~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            111111122333333322222222222  2233343322111111111 111  89999777777644321 46888888


Q ss_pred             CCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEE
Q 024245          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC  258 (270)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~  258 (270)
                      +. +.....+..       .    .......++ ++|+  .+. ++++-...+.|.++|... ......+.+ ......+
T Consensus       153 ~d-g~~~~~~~~-------~----~~~~P~gia-~d~~--~~~-lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi  214 (267)
T 1npe_A          153 MD-GTNRRILAQ-------D----NLGLPNGLT-FDAF--SSQ-LCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAV  214 (267)
T ss_dssp             TT-SCCCEEEEC-------T----TCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEE
T ss_pred             cC-CCCcEEEEE-------C----CCCCCcEEE-EcCC--CCE-EEEEECCCCEEEEEecCC-CceEEEecC-CCCceEE
Confidence            76 333333321       0    112455666 8874  233 666777778999999875 333333332 2334566


Q ss_pred             Eee
Q 024245          259 SMW  261 (270)
Q Consensus       259 ~~s  261 (270)
                      +..
T Consensus       215 ~~d  217 (267)
T 1npe_A          215 TSY  217 (267)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.95  E-value=0.00039  Score=59.23  Aligned_cols=218  Identities=7%  Similarity=-0.071  Sum_probs=106.8

Q ss_pred             cEEEEEEeCCCCEEEEe-cCCCcEEEEeCCC----CceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcc
Q 024245           20 SVTDVCFHQTKPILFAG-TTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~   94 (270)
                      .+.+++|.+.+..|+.+ ...+.|+.+++..    ......+....  .....|++.+. .++++++-...+.|.++++.
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~--~~P~glavD~~-~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC----CCCEECCCS-SSBCEECCTTTSCEEEEBSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC--CCcceEEEEee-CCcEEEEeccCCeEEEEecC
Confidence            45678999865555444 4567899998875    22222221111  22567788752 33455555567889999887


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCC-ceEEE--eccCc--eee-eccCCCCCeEecCCCCeEEEEec
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYE--REVGE--TVD-TDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~-~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ......  +  +.........+.+.......+....+. ..++.  +....  .+. ..+.....++|+|++.+|+++-.
T Consensus       484 g~~~~~--l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          484 GVKRKT--L--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             SCCEEE--E--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             CCceEE--E--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            553211  1  111111111222222111112222111 22222  21111  111 11222222999998877877544


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                       ..+.|..+|+.... ...+..       ..  ........++ +..    +. ++++....+.|..+|..+ ++.+..+
T Consensus       560 -~~~~I~~~d~dG~~-~~~~~~-------~~--~~~~~P~gla-vd~----~~-lywtd~~~~~V~~~d~~~-G~~~~~i  621 (699)
T 1n7d_A          560 -KLHSISSIDVNGGN-RKTILE-------DE--KRLAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLL  621 (699)
T ss_dssp             -TTTEEEEECSSSSC-CEEECC-------CS--SSCSSCCCCE-EET----TE-EEEECSTTTCEEEEETTT-EEEEECC
T ss_pred             -CCCeEEEEccCCCc-eEEEEe-------cC--CcCCCceEeE-EEC----CE-EEEEeCCCCeEEEEEccC-CCceEEe
Confidence             46889999987433 333321       00  0111223333 321    23 677777788999999877 6655555


Q ss_pred             eccCCCeeEEEeec
Q 024245          249 KVHLEPGLECSMWR  262 (270)
Q Consensus       249 ~~~~~~v~~~~~s~  262 (270)
                      ......++.|++.+
T Consensus       622 ~~~~~~P~~i~v~~  635 (699)
T 1n7d_A          622 AENLLSPEDMVLFH  635 (699)
T ss_dssp             CTTCSSCCCCCBCS
T ss_pred             ecCCCCCcEEEEeC
Confidence            43333455555443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.86  E-value=0.0059  Score=51.00  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=47.6

Q ss_pred             CCEEEEecC-CCcEEEEeC-CCCceeEEEeecCCCc---------ceEEEEEeeCCCCCE----EEEEeCCCcEEEEEcc
Q 024245           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH---------GIVSVATGPSIGLNK----VISQGRDGTVKCWDIE   94 (270)
Q Consensus        30 ~~~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~----l~s~~~d~~i~~wd~~   94 (270)
                      +..|+.++. ++.|.-+|. .+|+.+..+.......         ....+++.|  .+..    |+.++.|+.|.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence            346666776 889999999 8999888776432110         012345544  3344    8888899999999999


Q ss_pred             CCccCC
Q 024245           95 NGGLSS  100 (270)
Q Consensus        95 ~~~~~~  100 (270)
                      +++...
T Consensus       140 TG~~~W  145 (599)
T 1w6s_A          140 TGETVW  145 (599)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            987643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.84  E-value=0.012  Score=50.88  Aligned_cols=216  Identities=9%  Similarity=-0.061  Sum_probs=111.4

Q ss_pred             cccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCC-CEEEEEeCCCcEEEE
Q 024245           18 RASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCW   91 (270)
Q Consensus        18 ~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d~~i~~w   91 (270)
                      ...+.+|+|.+. +.++++-...+.|+.+++...    .....+....  .....|++.+  .+ ++.++-...+.|.+.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--~~P~GLAvD~--~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--CCcceeeeee--cCCcEEEEecCCCeEEEE
Confidence            456788999984 445555556678988888753    2222332222  3467899987  55 445566677899999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecC-CCCceEE--EeccCceeeeccC-C--CCC-eEecCCCCeEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCY--EREVGETVDTDSL-C--DSK-DDVPAEGPKYM  164 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~-~--~~~-~~~s~~~~~~~  164 (270)
                      ++.......    .+.........+.+.......+... +....++  ++..... ..... .  ... +++.+.+..|+
T Consensus       499 ~ldG~~~~~----l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          499 DTKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             ETTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE
T ss_pred             eCCCCeEEE----EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEE
Confidence            987543211    1111112233344443322222222 2112333  3222211 11111 1  111 89998887887


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      ++-. ..+.|..+++........+.        +..  .......++ +.    .++ ++++-...+.|...|..+ ++.
T Consensus       574 waD~-~~~~I~~~d~dG~~~~~v~~--------~~~--~l~~P~gla-v~----~~~-lYwtD~~~~~I~~~dk~t-G~~  635 (791)
T 3m0c_C          574 WVDS-KLHSISSIDVNGGNRKTILE--------DEK--RLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSD  635 (791)
T ss_dssp             EEET-TTTEEEEEETTSCSCEEEEE--------CTT--TTSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCC
T ss_pred             EEeC-CCCcEEEEecCCCceEEEec--------CCC--ccCCCCEEE-Ee----CCE-EEEEECCCCEEEEEeCCC-Ccc
Confidence            7543 46789999986433332222        110  111233444 32    233 667777778899998877 555


Q ss_pred             eeeeeccCCCeeEEEe
Q 024245          245 LTAMKVHLEPGLECSM  260 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~  260 (270)
                      +..+.........|++
T Consensus       636 ~~~l~~~l~~P~~i~v  651 (791)
T 3m0c_C          636 VNLLAENLLSPEDMVL  651 (791)
T ss_dssp             CEEEECSCSCCCCEEE
T ss_pred             eEEeecCCCCceeEee
Confidence            5555433334445544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0032  Score=50.41  Aligned_cols=158  Identities=12%  Similarity=0.076  Sum_probs=89.0

Q ss_pred             cEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC---cEEEEEcc
Q 024245           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG---TVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~---~i~~wd~~   94 (270)
                      ....|+++| ++..|+.+...+.|+.+|+..+....... ..  .....|+|++  ++++|+.+.. ++   ...+|-..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTH--EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeC
Confidence            457899998 45556665555789999988765444333 32  4578999999  8886665543 22   12222222


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceE
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      .+....  .          ..+.                             .+.....++++|++.+++++ -..++.|
T Consensus       213 ~g~~~~--~----------~~l~-----------------------------~~~~p~giavdp~~g~lyv~-d~~~~~V  250 (430)
T 3tc9_A          213 ESGFKV--I----------TELT-----------------------------KGQNCNGAETHPINGELYFN-SWNAGQV  250 (430)
T ss_dssp             GGTSCS--E----------EEEE-----------------------------ECSSCCCEEECTTTCCEEEE-ETTTTEE
T ss_pred             CCceee--e----------eeec-----------------------------cCCCceEEEEeCCCCEEEEE-ECCCCEE
Confidence            222110  0          0000                             01111116788944456553 3346889


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      ..++...+........       +    .......++ |+|+   |+.++++-...+.|..++..
T Consensus       251 ~~~~~~~~~~~~~~~~-------~----~~~~P~gia-~~pd---G~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTI-------Q----DSGWEFHIQ-FHPS---GNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEC-------S----SSSCCEEEE-ECTT---SSEEEEEETTTTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEEc-------C----CCCcceeEE-EcCC---CCEEEEEECCCCEEEEEeCC
Confidence            9999986654222221       0    112345566 9984   55355666677889998866

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.79  E-value=0.0026  Score=53.96  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCc--------ce-EEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +..|+.++.++.|.-+|..+|+.+..+.......        .+ ..+.+.    +..++.++.|+.|..+|..+++...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCCEee
Confidence            4467777788999999999999988875432110        00 122332    3678888899999999999997643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.77  E-value=0.002  Score=54.62  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             EEEEEeCCCCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CC-----CcEEEEEcc
Q 024245           22 TDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD-----GTVKCWDIE   94 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~   94 (270)
                      .++++..++++++.|+. +..+.+||..+++....-..... ..-.+++..+  +++.++.|+ .+     ..+.+||..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEec--CCeEEEEeCcccCCcccccceEeCCC
Confidence            34677789999999884 45899999988765543222221 1123455666  778888887 34     478999998


Q ss_pred             CCcc
Q 024245           95 NGGL   98 (270)
Q Consensus        95 ~~~~   98 (270)
                      +++.
T Consensus       323 t~~W  326 (656)
T 1k3i_A          323 SKTW  326 (656)
T ss_dssp             TTEE
T ss_pred             CCcc
Confidence            7754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.77  E-value=0.0071  Score=46.27  Aligned_cols=215  Identities=9%  Similarity=-0.012  Sum_probs=110.2

Q ss_pred             ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCcee-EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+.+++|.+. +.++.+-...+.|..+++..+... ..+....  .....+++.+. ++++.++-...+.|.++++...
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEcC-CCeEEEEECCCCEEEEEECCCC
Confidence            35678899984 555566566788999998765322 2222222  33678888862 3344556666788999998754


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEecc-Cceeeec----cCCCCCeEecCCCCeEEEEecCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREV-GETVDTD----SLCDSKDDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~  170 (270)
                      ....  +  ..........+.+.......+... +....++.+.. +......    +.....+++++++..++++- ..
T Consensus       112 ~~~~--l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD-~~  186 (318)
T 3sov_A          112 LRKV--L--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD-AK  186 (318)
T ss_dssp             SCEE--E--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE-TT
T ss_pred             cEEE--E--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEE-CC
Confidence            3211  1  111111222233332211112222 11233333221 1111111    11111199999888887744 45


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .+.|..+|+.. .....+..       +.    ......++ +.    .+. ++++-...+.|..+|..+ ++....+..
T Consensus       187 ~~~I~~~d~dG-~~~~~~~~-------~~----~~~P~gla-v~----~~~-lywtd~~~~~V~~~~~~~-G~~~~~i~~  247 (318)
T 3sov_A          187 LNFIHKSNLDG-TNRQAVVK-------GS----LPHPFALT-LF----EDI-LYWTDWSTHSILACNKYT-GEGLREIHS  247 (318)
T ss_dssp             TTEEEEEETTS-CSCEEEEC-------SC----CSCEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEEC
T ss_pred             CCEEEEEcCCC-CceEEEec-------CC----CCCceEEE-Ee----CCE-EEEEecCCCeEEEEECCC-CCceEEEeC
Confidence            68999999873 33333321       11    12234444 42    233 667777788899999877 554444443


Q ss_pred             cCCCeeEEEe
Q 024245          251 HLEPGLECSM  260 (270)
Q Consensus       251 ~~~~v~~~~~  260 (270)
                      ....+.+|+.
T Consensus       248 ~~~~P~~i~v  257 (318)
T 3sov_A          248 DIFSPMDIHA  257 (318)
T ss_dssp             CCSSCCCEEE
T ss_pred             CCCCCcEEEE
Confidence            2233444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.75  E-value=0.01  Score=49.30  Aligned_cols=67  Identities=10%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             CCEEEEecC-CCcEEEEeC-CCCceeEEEeecCCCc--------c-eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCcc
Q 024245           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH--------G-IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (270)
Q Consensus        30 ~~~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   98 (270)
                      +..++.++. ++.|.-+|. .+++.+..+.......        . ...+++    .+..++.++.|+.|..+|..+++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence            345666666 889999999 8999888775432100        0 012233    236788888899999999999876


Q ss_pred             CC
Q 024245           99 SS  100 (270)
Q Consensus        99 ~~  100 (270)
                      ..
T Consensus       138 ~W  139 (571)
T 2ad6_A          138 NW  139 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.74  E-value=0.01  Score=47.05  Aligned_cols=219  Identities=7%  Similarity=-0.083  Sum_probs=112.6

Q ss_pred             cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCC----ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ...+..|+|++.+. ++++-...+.|+.+++...    .....+....  .....+++.+. .+++.++-...+.|.+.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavD~~-~~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC--SCEEEEEEETT-TTEEEEEETTTTEEEEEC
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC--CCcccEEEEec-CCceEEEECCCCeEEEEe
Confidence            45678999998544 4455455678988988652    2222222222  44788998872 334445656678899888


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecC-C--CCceEEEeccCceeeeccC--CCCC-eEecCCCCeEEEE
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N--EPKDCYEREVGETVDTDSL--CDSK-DDVPAEGPKYMAV  166 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~--~~~~-~~~s~~~~~~~~~  166 (270)
                      ++......    .+.........+.+.......+... +  ..+...++...........  .... +++++++..++++
T Consensus       188 ~~g~~~~~----l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          188 TKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             TTTCSEEE----EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCceEE----EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence            87553211    1111111222333333222222222 1  1222223322111111111  1111 9999988888775


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      - ...+.|..+|+.... ...+..       ...  .......++ ..    .+. ++++-...+.|..+|..+ ++.+.
T Consensus       264 D-~~~~~I~~~d~dG~~-~~~~~~-------~~~--~l~~P~gl~-v~----~~~-lywtd~~~~~V~~~~~~~-G~~~~  325 (400)
T 3p5b_L          264 D-SKLHSISSIDVNGGN-RKTILE-------DEK--RLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSDVN  325 (400)
T ss_dssp             E-TTTTEEEEEETTSCC-CEEEEE-------CSS--TTSSEEEEE-EE----TTE-EEEEESSSCSEEEEESSS-CCCCE
T ss_pred             E-CCCCEEEEEeCCCCc-cEEEEe-------CCC--CCCCCEEEE-Ee----CCE-EEEecCCCCeEEEEEcCC-CCceE
Confidence            3 346889999987433 333321       110  112233444 32    233 677777788999999777 66556


Q ss_pred             eeeccCCCeeEEEee
Q 024245          247 AMKVHLEPGLECSMW  261 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s  261 (270)
                      .+......+.+|...
T Consensus       326 ~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          326 LLAENLLSPEDMVLF  340 (400)
T ss_dssp             EEECSCSCEEEEEEE
T ss_pred             EEecCCCCCceEEEE
Confidence            665444445555543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.71  E-value=0.0046  Score=52.36  Aligned_cols=75  Identities=8%  Similarity=0.076  Sum_probs=50.2

Q ss_pred             EEEEeC-CCCEEEEecCCC-----------cEEEEeCCCCceeE--EEeecCCCcceEEEEEeeCCCCCEEEEEeC-CCc
Q 024245           23 DVCFHQ-TKPILFAGTTGG-----------ELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGT   87 (270)
Q Consensus        23 ~~~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~   87 (270)
                      .+++.+ ++++++.|+.+.           .+.+||..+++...  .+..... ....++++..  ++.+++.|+. +..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~--~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDG--NGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECT--TSCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-CccccccCCC--CCCEEEeCCCCCCc
Confidence            456677 888888887543           58899998875433  2222111 2234567777  8888888884 558


Q ss_pred             EEEEEccCCccCC
Q 024245           88 VKCWDIENGGLSS  100 (270)
Q Consensus        88 i~~wd~~~~~~~~  100 (270)
                      +.+||..+++...
T Consensus       267 v~~yd~~t~~W~~  279 (656)
T 1k3i_A          267 TSLYDSSSDSWIP  279 (656)
T ss_dssp             EEEEEGGGTEEEE
T ss_pred             eEEecCcCCceeE
Confidence            9999998876543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.70  E-value=0.0091  Score=45.58  Aligned_cols=216  Identities=8%  Similarity=-0.048  Sum_probs=109.4

Q ss_pred             ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCC---CceeEE-EeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEE
Q 024245           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQ---HRTVSS-SWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWD   92 (270)
Q Consensus        19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd   92 (270)
                      ..+.+++|++.+. ++++-...+.|..+++..   +..... +....  .....+++.+  .+. +.++-...+.|.+.+
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~--~~~~ly~~d~~~~~I~~~~  105 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVAD  105 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEee--cCCeEEEEECCCCEEEEEe
Confidence            4578999998554 555556678999999875   122222 22221  3367889886  444 445556778999999


Q ss_pred             ccCCccCCCCccceecccceEEEEeeccCCccceecCCC-CceEEEec-cCceeeec----cCCCCCeEecCCCCeEEEE
Q 024245           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYERE-VGETVDTD----SLCDSKDDVPAEGPKYMAV  166 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~----~~~~~~~~~s~~~~~~~~~  166 (270)
                      +.......    ...........+.+.......+....+ ...++.+. .+......    +.....+++++++..++++
T Consensus       106 ~~g~~~~~----~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          106 TKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             TTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCceEE----EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE
Confidence            87543211    111111122233333222211222211 12333322 12111111    1111119999988888775


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      - ...+.|..+|+.. .....+..       ..  ........++ +.    ++. ++++-...+.|..+|..+ ++.+.
T Consensus       182 D-~~~~~I~~~d~dg-~~~~~~~~-------~~--~~~~~P~gia-v~----~~~-ly~~d~~~~~V~~~~~~~-g~~~~  243 (316)
T 1ijq_A          182 D-SKLHSISSIDVNG-GNRKTILE-------DE--KRLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSDVN  243 (316)
T ss_dssp             E-TTTTEEEEEETTS-CSCEEEEE-------CT--TTTSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCCCE
T ss_pred             E-CCCCeEEEEecCC-CceEEEee-------cC--CccCCcEEEE-EE----CCE-EEEEECCCCeEEEEeCCC-CcceE
Confidence            4 4468999999873 33333321       00  0112234454 42    244 666777788999999876 55555


Q ss_pred             eeeccCCCeeEEEe
Q 024245          247 AMKVHLEPGLECSM  260 (270)
Q Consensus       247 ~~~~~~~~v~~~~~  260 (270)
                      .+...-.....|+.
T Consensus       244 ~i~~~~~~p~~i~v  257 (316)
T 1ijq_A          244 LLAENLLSPEDMVL  257 (316)
T ss_dssp             EEECSCSCCCCEEE
T ss_pred             EEecCCCCceEEEE
Confidence            55432223344433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.67  E-value=0.0025  Score=54.40  Aligned_cols=208  Identities=10%  Similarity=-0.095  Sum_probs=100.0

Q ss_pred             CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCCcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (270)
Q Consensus        39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (270)
                      .+.|++.++...+....+...   ..+.+|+|.+  .++.|+.+ ...+.|+.+++.+..........+.........+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC---TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCcceeeeccC---cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            356888888766554443332   3467899998  65666654 45678999998751100000011111111112233


Q ss_pred             eccCCccceecCCC--CceEEEeccCceeeec---cCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245          118 LVKEPYANAKQANE--PKDCYEREVGETVDTD---SLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (270)
Q Consensus       118 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  192 (270)
                      +.+.....+.....  .+..++..........   +.....+++.|.+.+++++-....+.|..+++. +.....+..  
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~--  536 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--  536 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESC--
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEe--
Confidence            33222223333222  2333333322211111   111122899997777765332223678887775 332323321  


Q ss_pred             CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee--ccCCCeeEEEeecCCCcee
Q 024245          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ls  268 (270)
                            .   .......++ |+|+  +++ ++++-...+.|..+|+.. ......+.  ..-.....|++..+..|++
T Consensus       537 ------~---~l~~PnGla-vd~~--~~~-LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~~lywt  600 (699)
T 1n7d_A          537 ------E---NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWT  600 (699)
T ss_dssp             ------S---SCSSCCCEE-ECTT--TCC-EEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred             ------C---CCCCccEEE-Eecc--CCE-EEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECCEEEEE
Confidence                  0   112345566 8885  344 666667778999999874 22222221  1113345566665555444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.66  E-value=0.024  Score=49.02  Aligned_cols=214  Identities=11%  Similarity=-0.061  Sum_probs=104.0

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      +|+.+. ...|+..++........+...   ..+.+|+|.+  .++.| ++-...+.|+.+++............+....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~---~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             cccccc-ccceeEeeccCCcceeeecCC---CceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            444433 346888888765544444332   4478999998  54555 4555667888888875321000011111111


Q ss_pred             ceEEEEeeccCCccceecCCCCceE--EEeccCceeee---ccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          111 YHFCKLSLVKEPYANAKQANEPKDC--YEREVGETVDT---DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      .....+++.+.....+........+  .++........   .+.....+++.|.+.+|+++-.+..+.|...++. |...
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~  549 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI  549 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCce
Confidence            1222344443332233333332233  33332221111   1111111899998777777543334788888887 4433


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc--CCCeeEEEeecC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LEPGLECSMWRN  263 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~s~~  263 (270)
                      ..+..       .    .......++ +.|.  +++ ++++-...+.|...|+.. ......+...  -....+|++..+
T Consensus       550 ~~lv~-------~----~l~~P~GLa-vD~~--~~~-LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~~  613 (791)
T 3m0c_C          550 YSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED  613 (791)
T ss_dssp             EEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETT
T ss_pred             EEEEe-------C----CCCCceEEE-EecC--CCe-EEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeCC
Confidence            33331       0    122455565 7764  455 555556667899999864 3333333221  123456666555


Q ss_pred             CCcee
Q 024245          264 PITMS  268 (270)
Q Consensus       264 g~~ls  268 (270)
                      ..|++
T Consensus       614 ~lYwt  618 (791)
T 3m0c_C          614 KVFWT  618 (791)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.65  E-value=0.011  Score=45.13  Aligned_cols=72  Identities=15%  Similarity=0.047  Sum_probs=49.4

Q ss_pred             cEEEEEEeC-CCCEEEEecC-----------------CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEE
Q 024245           20 SVTDVCFHQ-TKPILFAGTT-----------------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus        20 ~v~~~~~s~-~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      ..+.+++.+ +|.+.++-..                 ++.|..+|..+++.......-   .....|+|+|  +++.|+.
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~p~gia~~~--dg~~lyv  201 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL---HVPGGAEVSA--DSSFVLV  201 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE---SCCCEEEECT--TSSEEEE
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC---ccCcceEECC--CCCEEEE
Confidence            468899999 8986665432                 367888888766544332222   2256899999  8886654


Q ss_pred             E-eCCCcEEEEEccCC
Q 024245           82 Q-GRDGTVKCWDIENG   96 (270)
Q Consensus        82 ~-~~d~~i~~wd~~~~   96 (270)
                      + ...+.|.+|++...
T Consensus       202 ~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          202 AEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             EEGGGTEEEEEESSST
T ss_pred             EeCCCCeEEEEECCCC
Confidence            4 56688999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.63  E-value=0.015  Score=46.00  Aligned_cols=214  Identities=11%  Similarity=-0.067  Sum_probs=106.6

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      +|+.+.. ..|+..++........+.. .  ..+.+|+|.+  .++.|+ +-...+.|..+++............+....
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~-~--~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLIPN-L--RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEECS-C--SCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEecc-ceeEEEccCCcceeEeccc-c--CcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            4444443 5788889886655444433 2  4588999998  555555 445677888888875321000011111122


Q ss_pred             ceEEEEeeccCCccceecCCCCceEE--EeccCceeeeccCCC---CCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          111 YHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCD---SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      .....+.+++.....+........+.  ++............-   ..+++.|.+.+++.+-....+.|...++. +...
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~  237 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDI  237 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSC
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCcc
Confidence            22233444433232333333222332  222221111111111   11889997777776543334788888886 3333


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec--cCCCeeEEEeecC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPGLECSMWRN  263 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~s~~  263 (270)
                      ..+..       .    .......++ ++|.  +++ +.++-...+.|..+|+.. .........  .-....+|++..+
T Consensus       238 ~~~~~-------~----~l~~P~gla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~~~  301 (400)
T 3p5b_L          238 YSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED  301 (400)
T ss_dssp             EEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEETT
T ss_pred             EEEEE-------C----CCCceEEEE-EEeC--CCE-EEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEeCC
Confidence            33321       0    122456666 8875  344 555556678899999874 332222222  1234556666555


Q ss_pred             CCcee
Q 024245          264 PITMS  268 (270)
Q Consensus       264 g~~ls  268 (270)
                      ..|++
T Consensus       302 ~lywt  306 (400)
T 3p5b_L          302 KVFWT  306 (400)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.57  E-value=0.015  Score=44.50  Aligned_cols=204  Identities=6%  Similarity=-0.121  Sum_probs=103.7

Q ss_pred             CCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCCCCccceecccceEEE
Q 024245           39 GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (270)
Q Consensus        39 dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  115 (270)
                      ...|+..++....  ....+...   ..+.+++|.+  .++.| ++-...+.|..+++..+....   ..+.........
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~---~~~~~~l~~p~g   83 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGL---EDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCC---EEEEECCSCCCE
T ss_pred             cCeEEEEECCCCceEEEEEecCC---CccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceE---EEEcCCCCCccE
Confidence            3579999988653  22222222   3367999998  54454 455567889999987653211   011111111122


Q ss_pred             EeeccCCccceecCCCC--ceEEEeccCceeeecc-CCCC---CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          116 LSLVKEPYANAKQANEP--KDCYEREVGETVDTDS-LCDS---KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       116 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      +.+.+.....+......  +..++...... .... ....   .+++.|.+..++.+-....+.|...++. |.....+.
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~  161 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII  161 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE
Confidence            33332222222222222  22233322111 1111 1111   1888887777776543335788888876 33333332


Q ss_pred             cCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      .       .    .-.....++ ++|+  +++ +.++-+..+.|..+|+.. ........+.......+++..++.|.+
T Consensus       162 ~-------~----~l~~Pngla-vd~~--~~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~~lywt  224 (318)
T 3sov_A          162 N-------S----EIYWPNGLT-LDYE--EQK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWT  224 (318)
T ss_dssp             C-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETTEEEEE
T ss_pred             E-------C----CCCCccEEE-Eecc--CCE-EEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCCEEEEE
Confidence            1       0    122455676 8875  344 666666778999999874 322222232334567777766655554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.57  E-value=0.0061  Score=52.52  Aligned_cols=138  Identities=9%  Similarity=0.012  Sum_probs=75.9

Q ss_pred             ceEEEEEe-eCCCCCEEEEE-eCCC----cEEEEEccCC-ccCCCCccceecccceEEEEeeccCCccceecCCCCceEE
Q 024245           64 GIVSVATG-PSIGLNKVISQ-GRDG----TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY  136 (270)
Q Consensus        64 ~v~~~~~~-~~~~~~~l~s~-~~d~----~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (270)
                      .+...+|+ |  ||++|+-+ +.+|    .|+++|+.++ +...   ..+..     .   ..                 
T Consensus       175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~~~-----~---~~-----------------  224 (751)
T 2xe4_A          175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKVSG-----T---NG-----------------  224 (751)
T ss_dssp             EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCEEE-----E---CS-----------------
T ss_pred             EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccccC-----c---ee-----------------
Confidence            47889999 9  99988743 3333    5999999987 5221   00100     0   00                 


Q ss_pred             EeccCceeeeccCCCCCeEecCCCCeEEEEecCCC---ceEEEEeCCCcce--eeeeccCcCCCCCCcccCCCceeeeee
Q 024245          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL---SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (270)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (270)
                                      .++|+|||+.++.+.-...   ..|+++++.+++.  ...+..        .   .......+.
T Consensus       225 ----------------~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~--------~---~~~~~~~~~  277 (751)
T 2xe4_A          225 ----------------EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE--------H---NPLFSAFMY  277 (751)
T ss_dssp             ----------------CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC--------C---CTTCEEEEE
T ss_pred             ----------------eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec--------C---CCceEEEEE
Confidence                            0569999988876543211   3688888877642  222321        0   112345566


Q ss_pred             ecCCCCCCCceEEEEec--CCCcEEEEEcCCCC-cc--eeeeeccCCCeeEEEeec
Q 024245          212 AYLPSKSQGFVNVLAGY--EDGSILVWDIRNPG-IP--LTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       212 ~~~p~~~~g~~~l~~~~--~dg~i~vwd~~~~~-~~--~~~~~~~~~~v~~~~~s~  262 (270)
                       |+|+   |+.++++..  ....|+++|+.++. +.  ............++.|+.
T Consensus       278 -~SpD---g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          278 -KAAD---TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             -ECTT---SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             -ECCC---CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence             9984   653333332  23468889988732 22  222233334445555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.54  E-value=0.016  Score=44.18  Aligned_cols=209  Identities=11%  Similarity=-0.052  Sum_probs=105.2

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCC---ccCCCCcccee
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENG---GLSSNPSLTIK  107 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~  107 (270)
                      +|+.+.. ..|+..|+...+....+...   ....+++|.+  .++.|+ +-..++.|..+++...   ....   ..+.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~~   73 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVIS   73 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CE---EEEC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCC---CceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccE---EEEe
Confidence            3444433 46999999877665554432   4478999998  555555 5556788999998762   1110   0111


Q ss_pred             cccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccC--CCCC--eEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          108 TNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSL--CDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      ........+.+++.....+....  ..+..++...... .....  ....  +++.|.+..++++.....+.|..+++. 
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-  151 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-  151 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence            11111122333322222222222  2223333332211 11111  1111  889997777776443323788888875 


Q ss_pred             cceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-ec--cCCCeeEE
Q 024245          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KV--HLEPGLEC  258 (270)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~--~~~~v~~~  258 (270)
                      +.....+..       .    .......++ ++|+  +++ ++++-...+.|..+|+.. .. ...+ ..  .-.....|
T Consensus       152 G~~~~~~~~-------~----~~~~P~gla-~d~~--~~~-lY~~D~~~~~I~~~d~dg-~~-~~~~~~~~~~~~~P~gi  214 (316)
T 1ijq_A          152 GVDIYSLVT-------E----NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLAHPFSL  214 (316)
T ss_dssp             SCCEEEEEC-------S----SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CS-CEEEEECTTTTSSEEEE
T ss_pred             CCCeEEEEE-------C----CCCCceEEE-Eecc--CCE-EEEEECCCCeEEEEecCC-Cc-eEEEeecCCccCCcEEE
Confidence            443333321       0    122455666 8875  344 566666778999999874 22 2222 21  12345677


Q ss_pred             EeecCCCcee
Q 024245          259 SMWRNPITMS  268 (270)
Q Consensus       259 ~~s~~g~~ls  268 (270)
                      ++..+..|++
T Consensus       215 av~~~~ly~~  224 (316)
T 1ijq_A          215 AVFEDKVFWT  224 (316)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            7765444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.46  E-value=0.022  Score=43.77  Aligned_cols=60  Identities=10%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCC--CCC---EEEEEe-C--CCcEEEEEcc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLN---KVISQG-R--DGTVKCWDIE   94 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--d~~i~~wd~~   94 (270)
                      ..+++.....+-+.+||+ .|+.++.+..    ..++.+..-|..  .|+   ++++.. .  +++|.+|++.
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            346666667788999999 7888888754    236777766600  122   233333 3  5789999874

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.45  E-value=0.048  Score=47.33  Aligned_cols=229  Identities=10%  Similarity=-0.024  Sum_probs=115.4

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeec-----CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      ...|.++...+++.+.+....+| |.+||..+++........     .....|.++...+  +|.+.+ |+.+| |.+||
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi-gt~~G-l~~~~  288 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWI-GTFND-LNIYH  288 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEE-EESSC-EEEEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEE-EeCCh-hheEc
Confidence            45688888888776555433345 899998776544322111     0114589998887  766554 44454 88899


Q ss_pred             ccCCccCCCCccc---eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc-C-----CCCC---eEecCCC
Q 024245           93 IENGGLSSNPSLT---IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-L-----CDSK---DDVPAEG  160 (270)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~s~~~  160 (270)
                      ..++.........   ..-....+..+..+..........++....++........... .     ....   +...++|
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g  368 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK  368 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence            8766432100000   0000112223333333333333333344444443332111111 0     0111   4455666


Q ss_pred             CeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcc-cCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       161 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      . +.+  |..++-|..||..+++.........     ... .-....+.++. ..+   +|+ +|..|+.++-|..||..
T Consensus       369 ~-lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~v~~i~-~d~---~g~-~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          369 N-LWI--GTNDGGLNLYNPITQRFTSYTLQED-----ESARGIGSNNIKAVY-VDE---KKS-LVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             C-EEE--EESSSCEEEECTTTCCEEEECCC-----------CCSCSCEEEEE-EET---TTT-EEEEEETTTEEEEEETT
T ss_pred             C-EEE--EECCCCeEEEcCCCCcEEEEecCCC-----CcccCCCCccEEEEE-EcC---CCC-EEEEEeCcCceeEEeCC
Confidence            5 443  4445679999988765433221100     000 00123466665 443   353 47778877789999988


Q ss_pred             CCCcceeeee-----ccCCCeeEEEeecCCCc
Q 024245          240 NPGIPLTAMK-----VHLEPGLECSMWRNPIT  266 (270)
Q Consensus       240 ~~~~~~~~~~-----~~~~~v~~~~~s~~g~~  266 (270)
                      + ++. ..+.     .....|.++...++|.+
T Consensus       436 ~-~~~-~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          436 S-GQV-ENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             T-CCE-EEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             C-CcE-EEeecCCCCcCCCeeEEEEECCCCCE
Confidence            6 442 2222     12356888888777764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.44  E-value=0.025  Score=43.86  Aligned_cols=167  Identities=9%  Similarity=0.015  Sum_probs=80.1

Q ss_pred             cccccccEEEEEEeCCCCEEEEec------------CCCcEEEEeCCCC-ceeEEEeecC-----CCcceEEEEEeeCCC
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGT------------TGGELRIWDTVQH-RTVSSSWVHS-----AAHGIVSVATGPSIG   75 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~~~   75 (270)
                      +++-......+...|+|..+++++            .+|.|.++|.++. .....+....     ..-....+.+.+..+
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            444334566777888886555542            6899999998742 1122222211     112467788766212


Q ss_pred             CC-EEEEE-eC--CCcEEEEEccCCccCCCCccceecccce-EEEEeeccCCcc-----cee-----------cCCCCce
Q 024245           76 LN-KVISQ-GR--DGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYA-----NAK-----------QANEPKD  134 (270)
Q Consensus        76 ~~-~l~s~-~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~-----------~~~~~~~  134 (270)
                      +. +|+.+ ..  +.+|.+|++.........+..+...... ...+.+......     ...           .......
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            33 34443 33  5678888887543211112222221111 111111111100     000           0111233


Q ss_pred             EEEeccCce--eeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          135 CYEREVGET--VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       135 ~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      ++.+..++.  +...+.....++|+||++.++++-. ..+.|..|++..
T Consensus       205 vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt-~~~~I~~~~~~~  252 (355)
T 3sre_A          205 VTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL-LAHKIHVYEKHA  252 (355)
T ss_dssp             EEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred             EEEEECCeEEEeecCCcccCcceECCCCCEEEEEeC-CCCeEEEEEECC
Confidence            444433321  1112222222999999998887543 468999999863

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.40  E-value=0.037  Score=46.12  Aligned_cols=64  Identities=13%  Similarity=0.042  Sum_probs=42.8

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcc-------eEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-------IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      .++.++.++.|.-+|..+|+.+..+........       ...+++    .+..++.++.|+.|.-+|..+++..
T Consensus        70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~  140 (582)
T 1flg_A           70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVV  140 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEE
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            455555534599999999999888765432110       012233    2367888888999999999998764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.29  E-value=0.074  Score=46.13  Aligned_cols=222  Identities=9%  Similarity=0.005  Sum_probs=113.4

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      |.++...+++.+.+ |+.++-|..|+..+++...... ...  ..|.++...+  ++.+.+ ++.++-|..||..+++..
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~--~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGT--KQIQAILQQS--PTRIWV-ATEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----C--CCEEEEEEEE--TTEEEE-EEBSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCC--CeeEEEEEcC--CCCEEE-EECCCCeEEEeCCCCeEE
Confidence            88888888876554 5554458999987765443221 122  4588998888  755554 444434888998776432


Q ss_pred             CCCccc---eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCC-------CCC---eEecCCCCeEEEE
Q 024245          100 SNPSLT---IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-------DSK---DDVPAEGPKYMAV  166 (270)
Q Consensus       100 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~s~~~~~~~~~  166 (270)
                      ......   ..-....+..+..+........... ....++.............       ...   +...++|. +.+ 
T Consensus       249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi-  325 (795)
T 4a2l_A          249 NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL-  325 (795)
T ss_dssp             EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE-
T ss_pred             EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE-
Confidence            100000   0000112233333333322222222 3444554444322211110       111   55667776 443 


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                       |+.++-|..|+..++... .+....     ....-....+.++. ..+   +|  .|..|+.++-|..||..+ +....
T Consensus       326 -gt~~~Gl~~~~~~~~~~~-~~~~~~-----~~~~l~~~~V~~i~-~d~---~g--~lWiGt~~~Gl~~~~~~~-~~~~~  391 (795)
T 4a2l_A          326 -GTYFGGLNYYHPIRNRFK-NIRNIP-----YKNSLSDNVVSCIV-EDK---DK--NLWIGTNDGGLNLYNPIT-QRFTS  391 (795)
T ss_dssp             -EESSSCEEEECGGGGSSE-EECCCT-----TSSSCSCSSEEEEE-ECT---TS--CEEEEESSSCEEEECTTT-CCEEE
T ss_pred             -EECCCCeEEeCCCcccce-EEcCCC-----CCCCCCCCeeEEEE-ECC---CC--CEEEEECCCCeEEEcCCC-CcEEE
Confidence             334577899987755432 222100     00011123466665 544   45  466677787899999876 33222


Q ss_pred             eee--------ccCCCeeEEEeecCCC
Q 024245          247 AMK--------VHLEPGLECSMWRNPI  265 (270)
Q Consensus       247 ~~~--------~~~~~v~~~~~s~~g~  265 (270)
                      ...        .....|.++...++|.
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~  418 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKS  418 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTT
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCC
Confidence            111        1235688888888876

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.053  Score=44.00  Aligned_cols=65  Identities=12%  Similarity=0.080  Sum_probs=41.9

Q ss_pred             cEEEEEEeC-CCC-EEEEecCCCcEEEEeCCCCceeEEEeecC-CCcceEEEEE-------eeCCCCCEEEEEeCCC
Q 024245           20 SVTDVCFHQ-TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVAT-------GPSIGLNKVISQGRDG   86 (270)
Q Consensus        20 ~v~~~~~s~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~l~s~~~d~   86 (270)
                      ....|+|.| ++. ++++-...+.|++.|++++.......... .......|+|       ++  +++.|+.+...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCC
Confidence            467899998 344 44444444678889988766654443321 1134789999       99  888666665543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.23  E-value=0.073  Score=44.83  Aligned_cols=210  Identities=6%  Similarity=-0.085  Sum_probs=108.8

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      +|+.+ ....|+..+++.......+....- ..+.+|+|.+  .++.|+ +-..++.|..+++.......    .+....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~----v~~~g~   79 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGV-KEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEH----VVEFGL   79 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSC-SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEE----EECSSC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCC-CceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEE----EEeCCC
Confidence            44443 345799999986554433332211 3478999998  555555 55567889888887543211    111111


Q ss_pred             ceEEEEeeccCCccceecCCCCceE--EEeccCc--eee-eccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          111 YHFCKLSLVKEPYANAKQANEPKDC--YEREVGE--TVD-TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      .....+++++.....+........+  .++....  .+. ..+.....+++.|....++.+--+..+.|...++.... .
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~  158 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-R  158 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-e
Confidence            1122233433322222223222233  2332221  111 11111111889987667776543335678888876433 3


Q ss_pred             eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCC
Q 024245          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPI  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~  265 (270)
                      ..+..            .......++ +.+.  .++ +.++-...+.|...|+.. ... ..+........+|++..+..
T Consensus       159 ~~l~~------------~~~~P~Gla-lD~~--~~~-LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P~glav~~~~l  220 (628)
T 4a0p_A          159 TTLVP------------NVGRANGLT-IDYA--KRR-LYWTDLDTNLIESSNMLG-LNR-EVIADDLPHPFGLTQYQDYI  220 (628)
T ss_dssp             EEEEC------------SCSSEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSC-EEEEECCSCEEEEEEETTEE
T ss_pred             EEEEC------------CCCCcceEE-Eccc--cCE-EEEEECCCCEEEEEcCCC-Cce-EEeeccCCCceEEEEECCEE
Confidence            33321            122455666 7774  344 566666778899999875 322 33443344566787776655


Q ss_pred             cee
Q 024245          266 TMS  268 (270)
Q Consensus       266 ~ls  268 (270)
                      |.+
T Consensus       221 y~t  223 (628)
T 4a0p_A          221 YWT  223 (628)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.16  E-value=0.087  Score=44.28  Aligned_cols=186  Identities=5%  Similarity=-0.073  Sum_probs=94.3

Q ss_pred             ccEEEEEEeCCCCEEE-EecCCCcEEEEeCCCCce-eEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccC
Q 024245           19 ASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIEN   95 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~   95 (270)
                      ..+.+++|++.+..|+ +=...+.|..+++..... ...+....  .....+++.+  .++.| ++-...+.|.+.++..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~--~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC--CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCC
Confidence            4578899998555554 444567888888875432 22232222  3478999988  55555 4555678899988875


Q ss_pred             CccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEE
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~  175 (270)
                      ....     .+-..                                     .+.....+++.|.+.+++++--...+.|.
T Consensus       116 ~~~~-----~l~~~-------------------------------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~  153 (619)
T 3s94_A          116 SLRK-----VLFWQ-------------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIE  153 (619)
T ss_dssp             CSCE-----EEECS-------------------------------------SCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCEE-----EEEeC-------------------------------------CCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence            4321     01000                                     01111116677776666664423345676


Q ss_pred             EEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCe
Q 024245          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPG  255 (270)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v  255 (270)
                      ..++. |.....+..       .    .......++ +.|.  +++ ++++-...+.|...|+.. ........+.....
T Consensus       154 r~~~d-G~~~~~l~~-------~----~~~~P~Gla-ld~~--~~~-LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P  216 (619)
T 3s94_A          154 RAGMD-GSSRFIIIN-------S----EIYWPNGLT-LDYE--EQK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP  216 (619)
T ss_dssp             EEETT-SCSCEEEEC-------S----SCSSEEEEE-EETT--TTE-EEEEETTTCCEEEESSSC-CEEC---------C
T ss_pred             EEECC-CCceEEEEe-------C----CCCCCcEEE-EEcc--CCE-EEEEeCCCCeEEEecCCC-CccEEEEeCCCCCc
Confidence            66665 333333321       0    112345565 7764  344 555556677888888764 22222222112233


Q ss_pred             eEEEeecCCCce
Q 024245          256 LECSMWRNPITM  267 (270)
Q Consensus       256 ~~~~~s~~g~~l  267 (270)
                      .+|++..+..|.
T Consensus       217 ~gi~~~~~~ly~  228 (619)
T 3s94_A          217 FALTLFEDILYW  228 (619)
T ss_dssp             CCEEESSSEEEE
T ss_pred             eEEEEeCCEEEE
Confidence            455555554333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.027  Score=45.04  Aligned_cols=93  Identities=10%  Similarity=0.068  Sum_probs=52.4

Q ss_pred             eEecCCCCeEEEEecCC---CceEEEEeCCCccee--eeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec
Q 024245          154 DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~  228 (270)
                      ++|+++|+.++++....   ...+..++. .+...  ..+..             ......++ ++|+  +|. ++++-.
T Consensus       184 ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-------------~~~p~gia-vdp~--~g~-lyv~d~  245 (430)
T 3tc9_A          184 ICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-------------GQNCNGAE-THPI--NGE-LYFNSW  245 (430)
T ss_dssp             EEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-------------CSSCCCEE-ECTT--TCC-EEEEET
T ss_pred             EEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-------------CCCceEEE-EeCC--CCE-EEEEEC
Confidence            67889998777643321   113433443 33322  22220             11234455 8874  454 666666


Q ss_pred             CCCcEEEEEcCCCCcceeeeec-cCCCeeEEEeecCCC
Q 024245          229 EDGSILVWDIRNPGIPLTAMKV-HLEPGLECSMWRNPI  265 (270)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~s~~g~  265 (270)
                      .++.|..+|... +........ .......|+|+|+|.
T Consensus       246 ~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          246 NAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             TTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             CCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCC
Confidence            788999999886 432122221 124578999999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.04  E-value=0.066  Score=40.85  Aligned_cols=83  Identities=4%  Similarity=0.083  Sum_probs=51.9

Q ss_pred             cccccccEEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEE-Eee----cCCCcceEEEEE---eeCCCCCEEEEEe-
Q 024245           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSS-SWV----HSAAHGIVSVAT---GPSIGLNKVISQG-   83 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~l~s~~-   83 (270)
                      +....---.+++|.+ ++.++++.-..+.|..||...+..... +..    ......+..|.|   .|  ++.++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEcc
Confidence            444444556789988 455555555899999999875543333 221    111123689999   57  756665433 


Q ss_pred             ------------CCCcEEEEEcc---CCcc
Q 024245           84 ------------RDGTVKCWDIE---NGGL   98 (270)
Q Consensus        84 ------------~d~~i~~wd~~---~~~~   98 (270)
                                  .+..|..||+.   +++.
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~  115 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKP  115 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCE
Confidence                        25778899988   6654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.01  E-value=0.12  Score=43.43  Aligned_cols=211  Identities=8%  Similarity=-0.087  Sum_probs=111.0

Q ss_pred             ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+.+++|++.+. ++++-..++.|+.+++........+....  .....|++.+  .+. +.++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEe--CCCEEEEEECCCCEEEEEecCCC
Confidence            4578999998544 45555667889999987544433333222  3467888887  444 4456566788999998754


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecC-CCCceEEEe--ccCc--eeeeccCCCCCeEecCCCCeEEEEecCCC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYER--EVGE--TVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                      ....  +  ....-.....+.+.......+... +....++..  ....  .+...+.....+++.+++..++++-. ..
T Consensus       113 ~~~~--l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~-~~  187 (628)
T 4a0p_A          113 HRQV--L--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDL-DT  187 (628)
T ss_dssp             TCEE--E--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEET-TT
T ss_pred             cEEE--E--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEEC-CC
Confidence            3211  1  111111223333332222222222 212233322  2111  11111111111899998888877544 46


Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      +.|..+|+..... ..+..        .    ......++ +.    .+. ++++-...+.|...|..+ ++....+...
T Consensus       188 ~~I~~~d~dG~~~-~v~~~--------~----l~~P~gla-v~----~~~-ly~tD~~~~~I~~~dk~t-g~~~~~l~~~  247 (628)
T 4a0p_A          188 NLIESSNMLGLNR-EVIAD--------D----LPHPFGLT-QY----QDY-IYWTDWSRRSIERANKTS-GQNRTIIQGH  247 (628)
T ss_dssp             TEEEEEETTSCSC-EEEEE--------C----CSCEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCSCEEEECS
T ss_pred             CEEEEEcCCCCce-EEeec--------c----CCCceEEE-EE----CCE-EEEecCCCCEEEEEECCC-CCceEEEecC
Confidence            8899999875433 33331        0    11234454 43    233 666667788999999877 5544444433


Q ss_pred             CCCeeEE
Q 024245          252 LEPGLEC  258 (270)
Q Consensus       252 ~~~v~~~  258 (270)
                      ...+.+|
T Consensus       248 ~~~p~~i  254 (628)
T 4a0p_A          248 LDYVMDI  254 (628)
T ss_dssp             CCSCCEE
T ss_pred             CCCccee
Confidence            3333443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.91  E-value=0.11  Score=41.49  Aligned_cols=158  Identities=12%  Similarity=0.055  Sum_probs=86.1

Q ss_pred             cEEEEEEeCC--CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC---Cc-EEEEEc
Q 024245           20 SVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GT-VKCWDI   93 (270)
Q Consensus        20 ~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---~~-i~~wd~   93 (270)
                      ....++|+|+  +..|+.+...+.|+.+|..+++...... ..  .....+++++  +++++++-...   .. +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECT--TCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECC--CCCEEEEcCCCCcccceEEEEEC
Confidence            4578999984  3345444444889999998776554433 22  4589999999  88844443321   11 111221


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCce
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~  173 (270)
                      ..+ ...            ...+.                             .+.....+++.|+...+++ +-..++.
T Consensus       215 ~~~-~~~------------~~~~~-----------------------------~~~~P~giavd~~~G~lyv-~d~~~~~  251 (433)
T 4hw6_A          215 ASG-FTE------------RLSLC-----------------------------NARGAKTCAVHPQNGKIYY-TRYHHAM  251 (433)
T ss_dssp             GGT-TCC------------EEEEE-----------------------------ECSSBCCCEECTTTCCEEE-CBTTCSE
T ss_pred             CCC-eec------------ccccc-----------------------------ccCCCCEEEEeCCCCeEEE-EECCCCE
Confidence            111 000            00000                             1111111678884345555 3445688


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      |+.+|..++.....+..       .. .  ......++ |+|+   |..++++-...+.|+.++..
T Consensus       252 V~~~d~~~g~~~~~~~~-------~~-~--~~~~~~ia-~dpd---G~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVM-------MD-T--KGSNFHIV-WHPT---GDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEECTTTCCEEEEEEE-------CS-C--CSSCEEEE-ECTT---SSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEECCCCeEEEEEec-------cC-C--CCCcccEE-EeCC---CCEEEEEeCCCCEEEEEeCC
Confidence            99999987765333321       00 0  11223466 9985   44355666677889998875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.04  Score=44.71  Aligned_cols=57  Identities=16%  Similarity=0.242  Sum_probs=37.5

Q ss_pred             eeeeeecCCCCCCCceEEEEecCCCcEEEEEcC-------CCCcc-----------eee-ee-ccCCCeeEEEeecCCC-
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-------NPGIP-----------LTA-MK-VHLEPGLECSMWRNPI-  265 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~-------~~~~~-----------~~~-~~-~~~~~v~~~~~s~~g~-  265 (270)
                      +..++ .+|+  ++. ++++-..++.|+.+|+.       + +..           ... +. +.......|+|+|+|. 
T Consensus       249 p~gia-vdp~--~g~-LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~  323 (496)
T 3kya_A          249 CNGAT-IHPI--NGE-LYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKY  323 (496)
T ss_dssp             CCCEE-ECTT--TCC-EEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             ceEEE-EcCC--CCe-EEEEECCCCEEEEEecccccccccC-ceeecccccccccccceeEecCCCCCceEEEEcCCCCE
Confidence            44555 7874  444 77777888899999997       4 332           112 11 2234568999999997 


Q ss_pred             -cee
Q 024245          266 -TMS  268 (270)
Q Consensus       266 -~ls  268 (270)
                       |++
T Consensus       324 lYva  327 (496)
T 3kya_A          324 AYFG  327 (496)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             565

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.73  E-value=0.06  Score=42.52  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc------------eeEEEeecC----CCcceEEEEEeeCC-CCCEEEEE
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------------TVSSSWVHS----AAHGIVSVATGPSI-GLNKVISQ   82 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~----~~~~v~~~~~~~~~-~~~~l~s~   82 (270)
                      .|..+..+|+|++||..+.. .|.|-.+..+.            ..+.+....    ...+|..+.|+|.. .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            57789999999999988754 79998887321            112333221    12679999999932 24589999


Q ss_pred             eCCCcEEEEEccCC
Q 024245           83 GRDGTVKCWDIENG   96 (270)
Q Consensus        83 ~~d~~i~~wd~~~~   96 (270)
                      ..|+.|++||+...
T Consensus       146 tsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          146 KEDDTITMFDILNS  159 (452)
T ss_dssp             ETTSCEEEEETTCT
T ss_pred             ecCCEEEEEEcccC
Confidence            99999999999873

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.70  E-value=0.34  Score=43.93  Aligned_cols=76  Identities=11%  Similarity=0.031  Sum_probs=51.8

Q ss_pred             cccEEEEEEeCC------CCEEEEecC-CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           18 RASVTDVCFHQT------KPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        18 ~~~v~~~~~s~~------~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ...|.|+++.|.      +.+++.|.. |++|+|+++...+.+........ ....++.+.......+|..|-.||.+..
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            457999999863      368999986 99999999987666654433211 2355565554223357888989998766


Q ss_pred             EEcc
Q 024245           91 WDIE   94 (270)
Q Consensus        91 wd~~   94 (270)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.49  E-value=0.083  Score=41.75  Aligned_cols=100  Identities=12%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcce------------eeeeccCcCCCCCCc-ccCCCceeeeeeecCCCCCCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------------CTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQG  220 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g  220 (270)
                      +..+|+|..+.+ .|  +..|.|-.+..+..            .+.+..       +. .......+..+. |+|-+..+
T Consensus        71 lvlSpsG~lLAl-~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l-------~~~~~~~~s~I~qVl-WHPl~~~d  139 (452)
T 3pbp_A           71 VISSTSGDLLCL-FN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI-------DEEEVGPKSSIKKVL-FHPKSYRD  139 (452)
T ss_dssp             EEECTTSSEEEE-EC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG-------GGCC--CCCCEEEEE-ECTTBGGG
T ss_pred             EEECCCCCEEEE-ec--CCeEEEEEecCccccCcccccccccceeEEEc-------CCcccCCCCceeEEE-eccccCCC
Confidence            568999975544 56  47899998873320            112221       10 011245677787 99987766


Q ss_pred             ceEEEEecCCCcEEEEEcCCC-Ccceeeee---------ccCCCeeEEEeecCCCc
Q 024245          221 FVNVLAGYEDGSILVWDIRNP-GIPLTAMK---------VHLEPGLECSMWRNPIT  266 (270)
Q Consensus       221 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~---------~~~~~v~~~~~s~~g~~  266 (270)
                      . .|++-..|+.|++||+... .+|. .++         .....|.+++|.++|..
T Consensus       140 s-~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          140 S-CIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             C-EEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             C-eEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence            6 8999999999999999852 2333 332         12257889999987654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.36  E-value=0.24  Score=38.18  Aligned_cols=70  Identities=11%  Similarity=0.128  Sum_probs=50.6

Q ss_pred             ccEEEEEE--eC-CCC-EEEEecCCCcEEEEeCC-------CCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           19 ASVTDVCF--HQ-TKP-ILFAGTTGGELRIWDTV-------QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        19 ~~v~~~~~--s~-~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      ..+..+++  +| .+. +++....+|.+..|++.       +.+.++++...   ..+..+...+  ....|+.+-++.-
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd--~~g~Lyv~eEd~G  202 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADD--EYGRLYIAEEDEA  202 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEET--TTTEEEEEETTTE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcC--CCCeEEEecccce
Confidence            45666777  67 354 67888889999999983       23566777654   4488999998  7789999998865


Q ss_pred             EEEEEc
Q 024245           88 VKCWDI   93 (270)
Q Consensus        88 i~~wd~   93 (270)
                      |..++.
T Consensus       203 Iw~~da  208 (355)
T 3amr_A          203 IWKFSA  208 (355)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            544453

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.33  E-value=0.4  Score=40.36  Aligned_cols=75  Identities=5%  Similarity=-0.090  Sum_probs=47.2

Q ss_pred             ccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+.+++|.+. +.++++-...+.|+.+++........+....  .....+++.+. .+++.++-+..+.|.+.++...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~--~~p~GlAvD~~-~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI--AHPDGIAVDWV-ARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC--CCcCceEEecc-cCcEEEEeCCCCcEEEEeCCCC
Confidence            34678999884 4444454557788888887544333333222  34678888862 3345556566788888888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.29  E-value=0.27  Score=38.07  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=46.0

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEe-ecCCCcceEEEEEeeCCC---CCEEEEE-eCC-----
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSW-VHSAAHGIVSVATGPSIG---LNKVISQ-GRD-----   85 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~---~~~l~s~-~~d-----   85 (270)
                      -...+.|+|.|+|+++++ ..+|.|++++  .++..  ..+. ..........|+|+|  +   +..|+.+ ...     
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCc
Confidence            345689999999986655 5569999998  34322  1111 111124589999999  6   4455443 322     


Q ss_pred             CcEEEEEccCC
Q 024245           86 GTVKCWDIENG   96 (270)
Q Consensus        86 ~~i~~wd~~~~   96 (270)
                      +.|..|+...+
T Consensus       105 ~~v~r~~~~~~  115 (352)
T 2ism_A          105 NQVVRLRHLGE  115 (352)
T ss_dssp             EEEEEEEECSS
T ss_pred             cEEEEEEeCCC
Confidence            56777777643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.13  E-value=0.25  Score=36.26  Aligned_cols=74  Identities=3%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEee----cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .....+++.+++.++++.-.++.+.++++.....   +.....    .........|+|.|  .++.|+++.+.....+|
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEE
Confidence            4567888888888777766678899998865432   222221    11224579999999  87788877777677777


Q ss_pred             Ecc
Q 024245           92 DIE   94 (270)
Q Consensus        92 d~~   94 (270)
                      .+.
T Consensus       148 ~~~  150 (255)
T 3qqz_A          148 KVN  150 (255)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            776

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.10  E-value=0.61  Score=40.38  Aligned_cols=225  Identities=7%  Similarity=-0.065  Sum_probs=108.6

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-------e-----cCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------V-----HSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ...|.++...++|. |..|+..+-|.++|..+++......       .     .-....|.++...+  +|+ |..|+.+
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence            35688998888875 4445553458889987654332111       0     01114588998887  755 5556666


Q ss_pred             CcEEEEEccCCccCCCCccc----eec-ccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc--CCC-CC---e
Q 024245           86 GTVKCWDIENGGLSSNPSLT----IKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCD-SK---D  154 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~---~  154 (270)
                      +-|..++..+.....-....    ... ....+..+..+..........+.....++...........  ... ..   +
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            66888887765422100000    000 0112222333322222222223334444443322111100  011 11   4


Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEE
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~  234 (270)
                      ...++|. +.+  |..++.|..+|..+++.. .+..       .  ......+.++. ..+   +|.  |..|.. +-|.
T Consensus       413 ~~d~~g~-lWi--gt~~~Gl~~~~~~~~~~~-~~~~-------~--~~~~~~v~~i~-~d~---~g~--lwigt~-~Gl~  472 (781)
T 3v9f_A          413 LKDSEGN-LWF--GTYLGNISYYNTRLKKFQ-IIEL-------E--KNELLDVRVFY-EDK---NKK--IWIGTH-AGVF  472 (781)
T ss_dssp             EECTTSC-EEE--EETTEEEEEECSSSCEEE-ECCS-------T--TTCCCCEEEEE-ECT---TSE--EEEEET-TEEE
T ss_pred             EECCCCC-EEE--EeccCCEEEEcCCCCcEE-Eecc-------C--CCCCCeEEEEE-ECC---CCC--EEEEEC-CceE
Confidence            4445665 444  333467899998776543 2321       0  01123456655 444   454  444544 4588


Q ss_pred             EEEcCCCCcceeeeecc-----CCCeeEEEeecCCCce
Q 024245          235 VWDIRNPGIPLTAMKVH-----LEPGLECSMWRNPITM  267 (270)
Q Consensus       235 vwd~~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l  267 (270)
                      .||..+ ++........     ...|.++...++|.+.
T Consensus       473 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  509 (781)
T 3v9f_A          473 VIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFW  509 (781)
T ss_dssp             EEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred             EEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEE
Confidence            899876 4432222111     3568888888877653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.02  E-value=0.16  Score=39.29  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=19.4

Q ss_pred             eEEEEEeeCCCCCEEEEEe------------CCCcEEEEEccC
Q 024245           65 IVSVATGPSIGLNKVISQG------------RDGTVKCWDIEN   95 (270)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~   95 (270)
                      ...+.+.|  +|..+++++            .+|.|.++|+.+
T Consensus        52 ~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~   92 (355)
T 3sre_A           52 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNE   92 (355)
T ss_dssp             CCEEEECT--TSEEEEEECCC-----------CCEEEEEETTS
T ss_pred             cceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCC
Confidence            56777777  755544442            688899999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.93  E-value=0.36  Score=36.35  Aligned_cols=75  Identities=8%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             ccEEEEEEeCCCCEEEEecCC-C-cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           19 ASVTDVCFHQTKPILFAGTTG-G-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d-g-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      ..+..+++.++|+++++.... + .|..+|..+++.......... .....++..+  ++..+++-..++.|..+|..++
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA-IFLNGITPLS--DTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC-SCEEEEEESS--SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc-cccCcccccC--CCcEEEEECCCCeEEEEeCCCC
Confidence            467889999999866654332 2 466777777765433322111 2234555555  5444555556888888887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.53  E-value=0.72  Score=36.87  Aligned_cols=72  Identities=7%  Similarity=0.026  Sum_probs=48.6

Q ss_pred             EEEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEEEcc
Q 024245           21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIE   94 (270)
Q Consensus        21 v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~   94 (270)
                      ...++++| +|.+.++-..++.|+.+|..++.....+........-..++|+|  +++.|+ +-...+.|..+++.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT--TSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCC
Confidence            45688888 77766666677889999988776533332221112235799999  888554 55567789888876

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.42  E-value=0.16  Score=38.71  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             cEEEEEE---eCCCCEEEEec-------------CCCcEEEEeCC---CCceeEEEeec--C---------CCcceEEEE
Q 024245           20 SVTDVCF---HQTKPILFAGT-------------TGGELRIWDTV---QHRTVSSSWVH--S---------AAHGIVSVA   69 (270)
Q Consensus        20 ~v~~~~~---s~~~~~l~s~~-------------~dg~i~vwd~~---~~~~~~~~~~~--~---------~~~~v~~~~   69 (270)
                      .+..|.|   .|+++++++..             .+..|..+|+.   +++.+......  .         .......++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            3589999   58887777533             26779999999   77776555421  1         112478999


Q ss_pred             EeeCCCCCEEEEEeCC-CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc
Q 024245           70 TGPSIGLNKVISQGRD-GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS  148 (270)
Q Consensus        70 ~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (270)
                      ..+  +|+.-++++.. +.|...+.......     .          +......                      ....
T Consensus       144 vD~--~GnaYVt~s~~~~~I~rV~pdG~~~~-----~----------~~~~~~~----------------------~~~~  184 (334)
T 2p9w_A          144 QDR--DGNSYVAFALGMPAIARVSADGKTVS-----T----------FAWESGN----------------------GGQR  184 (334)
T ss_dssp             ECT--TSCEEEEEEESSCEEEEECTTSCCEE-----E----------EEECCCC----------------------SSSC
T ss_pred             ECC--CCCEEEeCCCCCCeEEEEeCCCCEEe-----e----------eeecCCC----------------------cccc
Confidence            999  99998888877 77655554432110     0          0000000                      0011


Q ss_pred             CCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          149 LCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       149 ~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                      .+-..+++.|+|..|++ ..+ .+.+..+|+.+
T Consensus       185 ~G~nGIv~~pdg~~Liv-~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          185 PGYSGITFDPHSNKLIA-FGG-PRALTAFDVSK  215 (334)
T ss_dssp             CSCSEEEEETTTTEEEE-ESS-SSSEEEEECSS
T ss_pred             cCcceEEEeCCCCEEEE-EcC-CCeEEEEcCCC
Confidence            11222789999987776 455 79999999884

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.24  E-value=0.78  Score=35.53  Aligned_cols=75  Identities=13%  Similarity=0.053  Sum_probs=45.8

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEe-ecCCCcceEEEEEeeCCC---CCEEEEEeC----C---
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSW-VHSAAHGIVSVATGPSIG---LNKVISQGR----D---   85 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~-~~~~~~~v~~~~~~~~~~---~~~l~s~~~----d---   85 (270)
                      -...+.|+|.|+|+++++ ..+|.|++++ .+++ .+..+. ..........|+++|  +   +..|+.+..    +   
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCc
Confidence            356789999999985555 5569999997 3454 222211 111124588999999  6   445543332    3   


Q ss_pred             -CcEEEEEccCC
Q 024245           86 -GTVKCWDIENG   96 (270)
Q Consensus        86 -~~i~~wd~~~~   96 (270)
                       ..|..|+....
T Consensus       104 ~~~v~r~~~~~~  115 (354)
T 3a9g_A          104 RNRVIRGRLDGS  115 (354)
T ss_dssp             EEEEEEEEECSS
T ss_pred             ceEEEEEEECCC
Confidence             56777776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.03  E-value=1.6  Score=37.84  Aligned_cols=224  Identities=9%  Similarity=-0.054  Sum_probs=108.6

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-------ecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ...|.++...++|. |..|+.++-|..++...........       .......|.++...+  +++ |..|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~-lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGK-LWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSC-EEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCC-EEEEeCCCcEEE
Confidence            46799999988886 5556656669999887654322110       010114588888877  655 555665566888


Q ss_pred             EEccCCccCCCCccce-ecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccC--CCCC---eEecCCCCeEE
Q 024245           91 WDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL--CDSK---DDVPAEGPKYM  164 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~s~~~~~~~  164 (270)
                      ||..++....  .... ......+..+...................++..+++.......  ....   +...++|. +.
T Consensus       388 ~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lw  464 (781)
T 3v9f_A          388 FENGKRVAIY--NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IW  464 (781)
T ss_dssp             EETTEEEEEC--C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EE
T ss_pred             EECCCCeEEE--ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EE
Confidence            9887654321  1000 0011112222222222222221112223333333332221111  1111   44455564 55


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      +.+  . +.|..||..+++.......       .........+.++. ..+   +|.  |..|+.++-|..||..+ ++ 
T Consensus       465 igt--~-~Gl~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~-~d~---~g~--lWigt~~~Gl~~~~~~~-~~-  526 (781)
T 3v9f_A          465 IGT--H-AGVFVIDLASKKVIHHYDT-------SNSQLLENFVRSIA-QDS---EGR--FWIGTFGGGVGIYTPDM-QL-  526 (781)
T ss_dssp             EEE--T-TEEEEEESSSSSCCEEECT-------TTSSCSCSCEEEEE-ECT---TCC--EEEEESSSCEEEECTTC-CE-
T ss_pred             EEE--C-CceEEEeCCCCeEEecccC-------cccccccceeEEEE-EcC---CCC--EEEEEcCCCEEEEeCCC-Ce-
Confidence            433  2 4588999887664432221       00001123456665 554   454  44455544477788765 33 


Q ss_pred             eeeeec----cCCCeeEEEeecCCCc
Q 024245          245 LTAMKV----HLEPGLECSMWRNPIT  266 (270)
Q Consensus       245 ~~~~~~----~~~~v~~~~~s~~g~~  266 (270)
                      +..+..    ....|.++...++|.+
T Consensus       527 ~~~~~~~~~l~~~~i~~i~~d~~g~l  552 (781)
T 3v9f_A          527 VRKFNQYEGFCSNTINQIYRSSKGQM  552 (781)
T ss_dssp             EEEECTTTTCSCSCEEEEEECTTSCE
T ss_pred             EEEccCCCCCCCCeeEEEEECCCCCE
Confidence            222221    1346788888777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.37  E-value=0.18  Score=38.74  Aligned_cols=122  Identities=11%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             CEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEe
Q 024245           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (270)
Q Consensus        77 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (270)
                      .+++.++.||.|.-.|..+|+...    .++.. .....+.... +                                 -
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W----~~~~~-~~~p~~~~~~-~---------------------------------~   51 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIW----SIEPE-NFQPLIEIQE-P---------------------------------S   51 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEE----EECGG-GSCCSEECCC-S---------------------------------C
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEE----EecCC-ccCCcEEecC-C---------------------------------c
Confidence            678889999999999999887643    22221 0000000000 0                                 0


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCC-------CCCceEEEEecC
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNVLAGYE  229 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-------~~g~~~l~~~~~  229 (270)
                      .+.+..+++.....||.|..+|..+|.....+..+.      - . ....+. .. =.|--       .++  .+++|+.
T Consensus        52 ~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~------l-v-~~SP~~-~~-~~pvv~~~~~~~~~g--~Vy~Gs~  119 (339)
T 2be1_A           52 RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ------L-V-STSPLH-LK-TNIVVNDSGKIVEDE--KVYTGSM  119 (339)
T ss_dssp             TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH------H-H-TTCSEE-EE-CC----------CCE--EEEECEE
T ss_pred             cccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc------c-e-eccccc-cC-CCceeecccccccCC--EEEEEec
Confidence            011223444333468999999998886555444210      0 0 000000 00 00000       123  7899999


Q ss_pred             CCcEEEEEcCCCCcceeeeec
Q 024245          230 DGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      +|.+...|+++ ++.+..+..
T Consensus       120 ~g~l~ald~~t-G~~~W~~~~  139 (339)
T 2be1_A          120 RTIMYTINMLN-GEIISAFGP  139 (339)
T ss_dssp             EEEEEEEETTT-CCEEEEEST
T ss_pred             CCEEEEEECCC-CcEEEEEec
Confidence            99999999999 888887763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.62  E-value=2.3  Score=34.18  Aligned_cols=62  Identities=8%  Similarity=0.048  Sum_probs=39.5

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--Eeec----CCCcceEEEEEeeCCC---CCEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVH----SAAHGIVSVATGPSIG---LNKVIS   81 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~----~~~~~v~~~~~~~~~~---~~~l~s   81 (270)
                      -...+.|+|.|+|+++++-...+.|++++..+++....  +...    ..+.....|+|+|  +   +..|..
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv   96 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYI   96 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEE
Confidence            34678999999999777755445788888655543222  2110    1225678999998  5   455543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.45  E-value=2.5  Score=34.01  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=21.8

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .....|+|.|  +|+++++-...+.|.+++..++
T Consensus        27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGP--DNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCC
Confidence            3468999999  9887666544446777765444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.41  E-value=3.7  Score=36.56  Aligned_cols=39  Identities=15%  Similarity=0.188  Sum_probs=34.3

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   57 (270)
                      ..+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            357788888888899999999999999999999888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.51  E-value=2.5  Score=31.52  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC-----cEEEEEccCCcc
Q 024245           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGGL   98 (270)
Q Consensus        29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~   98 (270)
                      ++.+++.|+.+     ..+.+||..+.+....-........ .+++. -  ++..++.|+.++     .+.+||+.+.+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-E--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-E--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            55666777654     3588899887654432221111111 12222 2  446677777553     577888887764


Q ss_pred             C
Q 024245           99 S   99 (270)
Q Consensus        99 ~   99 (270)
                      .
T Consensus       137 ~  137 (302)
T 2xn4_A          137 F  137 (302)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.44  E-value=2.5  Score=31.44  Aligned_cols=67  Identities=16%  Similarity=0.073  Sum_probs=37.1

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccC
Q 024245           29 TKPILFAGTTG-----GELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIEN   95 (270)
Q Consensus        29 ~~~~l~s~~~d-----g~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~   95 (270)
                      ++.+++.|+.+     ..+.+||+.+.+   ....-........- ++.. -  ++..++.|+.+     ..+.+||+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-L--GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-E--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-E--CCEEEEEcccCCCcccceEEEEcCCC
Confidence            46677777754     468999988766   33322111111111 2222 2  44666666644     3588899887


Q ss_pred             CccC
Q 024245           96 GGLS   99 (270)
Q Consensus        96 ~~~~   99 (270)
                      .+..
T Consensus       138 ~~W~  141 (301)
T 2vpj_A          138 DQWS  141 (301)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.28  E-value=3.7  Score=32.90  Aligned_cols=148  Identities=12%  Similarity=0.121  Sum_probs=82.8

Q ss_pred             CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEe
Q 024245           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (270)
Q Consensus        38 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (270)
                      .+.+|.|-|+.++..+..-...     -.+.-.+|  ..+.++-=. ..++.+||+++....+  ...+... ..+    
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klk--s~~~~e~-Vvf----  110 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDD-VTF----  110 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC-----CSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEE--EEECSSC-CCE----
T ss_pred             CCCeEEEEECCCCCcceecccc-----cceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhc--ceecCCC-ceE----
Confidence            3447899999886555333222     12455678  656555433 6799999999876544  1122111 111    


Q ss_pred             eccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC-cceeeeeccCcCCCC
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGS  196 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~  196 (270)
                                        |.                  |-.+ +.+-+++   +..|+-|++.. ..+.+.+.       
T Consensus       111 ------------------Wk------------------Wis~-~~l~lVT---~taVyHWsi~~~s~P~kvFd-------  143 (494)
T 1bpo_A          111 ------------------WK------------------WISL-NTVALVT---DNAVYHWSMEGESQPVKMFD-------  143 (494)
T ss_dssp             ------------------EE------------------EEET-TEEEEEC---SSEEEEEESSSSCCCEEEEE-------
T ss_pred             ------------------EE------------------ecCC-CeEEEEc---CCeeEEecccCCCCchhhee-------
Confidence                              11                  1111 2344433   47899999974 45777777       


Q ss_pred             CCcccCCCceeeeeeecCCCCCCCceEEEEec------CCCcEEEEEcCCCCcceeeeeccCCC
Q 024245          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY------EDGSILVWDIRNPGIPLTAMKVHLEP  254 (270)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~  254 (270)
                       .|..-....+.... -++   +.+.++++|=      -.|.+.+|..+.  +.-+.+.||...
T Consensus       144 -R~~~L~~~QIInY~-~d~---~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa~  200 (494)
T 1bpo_A          144 -RHSSLAGCQIINYR-TDA---KQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAAS  200 (494)
T ss_dssp             -CCGGGTTCEEEEEE-ECT---TSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEEECCSEEE
T ss_pred             -cchhcccceEEEEE-ECC---CCCeEEEEeecccCCcccceEEEeeccc--cccchheeeeee
Confidence             45433334454444 454   4554454442      347889999884  455666666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.27  E-value=0.71  Score=35.48  Aligned_cols=66  Identities=15%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEccCCc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIENGG   97 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~   97 (270)
                      .+++.++.||.|.-.|.++|+.+..+..... .++....-.....+..++.+  +.||.|..++..++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            3788899999999999999999988875410 22322211110012234433  589999999987763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.20  E-value=3.2  Score=32.03  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=24.4

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .....|+|.|  +|.++++--..|.|++++..++
T Consensus        32 ~~P~~ia~~p--dG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           32 NSPWGLAPLP--GGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             SSEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcC--CCcEEEEEecCCEEEEEECCCC
Confidence            4478999999  9887776655888988876544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.73  E-value=3.4  Score=31.39  Aligned_cols=69  Identities=9%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeC--CCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      +...+..+.+.+++.+++.+...+..+-+|-  .+.+.+.  ....  ..+..+.+.+  ++..+ .++.+|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~--~~~~~~~~~~--~g~~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTS--RRLHNMGFTP--DGRLW-MIVNGGKIAFSD  231 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSS--SCEEEEEECT--TSCEE-EEETTTEEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCC--CccceeEECC--CCCEE-EEeCCceEEEec
Confidence            3456888999999888877755443333442  2222221  1222  5588899988  76544 555678776664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.48  E-value=3.9  Score=31.58  Aligned_cols=27  Identities=19%  Similarity=0.049  Sum_probs=20.3

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .....|+|.|  +|+ |+.+..+|.|.++|
T Consensus        29 ~~P~~ia~~p--dG~-l~V~e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLG--GGR-YLVTERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEE--TTE-EEEEETTTEEEEEC
T ss_pred             CCCeEEEEcC--CCe-EEEEeCCCEEEEEe
Confidence            4478999999  877 44456668888886

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.46  E-value=3.5  Score=30.98  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=34.9

Q ss_pred             CCCEEEEecCC--------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-C-----CcEEEEEcc
Q 024245           29 TKPILFAGTTG--------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-D-----GTVKCWDIE   94 (270)
Q Consensus        29 ~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----~~i~~wd~~   94 (270)
                      ++.+++.|+.+        ..+.+||..+.+....-........ .+++. -  ++..++.|+. +     ..+.+||+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCC
Confidence            45566666632        4588999887654332111111111 12222 3  4466667765 2     357788877


Q ss_pred             CCcc
Q 024245           95 NGGL   98 (270)
Q Consensus        95 ~~~~   98 (270)
                      +.+.
T Consensus       174 ~~~W  177 (315)
T 4asc_A          174 KFEW  177 (315)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.24  E-value=4.1  Score=31.39  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             cceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 024245           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (270)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd   92 (270)
                      .....|+|.|  +|.+++ +..++.|.+++
T Consensus        31 ~~P~~ia~~p--dG~l~V-~e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLP--DGGMLI-AERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECT--TSCEEE-EETTTEEEEEE
T ss_pred             CCceEEEEcC--CCeEEE-EeCCCeEEEEE
Confidence            3368999999  987555 45668888887

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.22  E-value=3.6  Score=30.70  Aligned_cols=67  Identities=10%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCCEEEEecCC----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------CcEEEEEccCCcc
Q 024245           29 TKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGGL   98 (270)
Q Consensus        29 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~   98 (270)
                      ++.+++.|+.+    ..+.+||..+.+....-........- +++ .-  ++.+++.|+.+      ..+.+||..+.+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AAC-AA--EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEE-EE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEE-EE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            56677777654    67889998877544332211111111 222 22  44666777765      4688999988764


Q ss_pred             C
Q 024245           99 S   99 (270)
Q Consensus        99 ~   99 (270)
                      .
T Consensus       131 ~  131 (306)
T 3ii7_A          131 H  131 (306)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.65  E-value=4.7  Score=31.07  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             ceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ....|+|.|  +|+.|+.+...|.|++++.
T Consensus        19 ~P~~i~~~p--dG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           19 HPWALAFLP--DNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SEEEEEECS--TTCCEEEEETTTEEEEEET
T ss_pred             CcEEEEEcC--CCCEEEEEeCCceEEEEeC
Confidence            368999999  9883445566788888874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.61  E-value=5.2  Score=29.93  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=34.5

Q ss_pred             CCCEEEEecC----C-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEcc
Q 024245           29 TKPILFAGTT----G-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIE   94 (270)
Q Consensus        29 ~~~~l~s~~~----d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~   94 (270)
                      ++.+++.|+.    +     ..+.+||+.+.+....-........-..+.  -  ++..++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I--DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--E--CCEEEEEcCCCCCcccccEEEECCC
Confidence            5666677765    2     468889988765443221111111112222  2  44666666543     357777777


Q ss_pred             CCcc
Q 024245           95 NGGL   98 (270)
Q Consensus        95 ~~~~   98 (270)
                      +.+.
T Consensus       146 ~~~W  149 (308)
T 1zgk_A          146 RDEW  149 (308)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            6654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.47  E-value=12  Score=34.12  Aligned_cols=64  Identities=8%  Similarity=-0.045  Sum_probs=41.7

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCC----CCEEEEEeC-CCcEEEEEccCCc
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG----LNKVISQGR-DGTVKCWDIENGG   97 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-d~~i~~wd~~~~~   97 (270)
                      +++.++ .+.+.++++..++... .....-+..|.|+++.|..+    +.+++.|.. |++++++++.+.+
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~-~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQ-ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEE-EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEE-CCEEEEEEeeCCceee-ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            455554 5678888877654322 21111125599999986322    368888986 9999999998643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.30  E-value=7.3  Score=31.25  Aligned_cols=211  Identities=14%  Similarity=0.146  Sum_probs=108.1

Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcc
Q 024245           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL  104 (270)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  104 (270)
                      -.+|..+.+|--. ..++.|+|+++.+.++.+...   ..|.-=.|-.  + +.|+-.+ +..|.-|++....   .|..
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis--~-~~l~lVT-~taVyHWsi~~~s---~P~k  140 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGES---QPVK  140 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE--T-TEEEEEC-SSEEEEEESSSSC---CCEE
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC--C-CeEEEEc-CCeeEEecccCCC---Cchh
Confidence            3467677676654 578999999999888888765   4477777876  5 6666555 3479999997632   3333


Q ss_pred             ceecccc--eEEEEeeccCCccc----e---ecCC---CCceEEEeccCceeeeccCCCCC--eEecCCC----CeEEEE
Q 024245          105 TIKTNSY--HFCKLSLVKEPYAN----A---KQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPAEG----PKYMAV  166 (270)
Q Consensus       105 ~~~~~~~--~~~~~~~~~~~~~~----~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~----~~~~~~  166 (270)
                      .+..+..  ....+....+....    .   ...+   +...+|..+  +.+...++||..  ..+-.+|    ..+++.
T Consensus       141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  218 (494)
T 1bpo_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (494)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred             heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCceEEEE
Confidence            3332211  11222222111110    0   0011   111222222  233445566665  3333332    223322


Q ss_pred             e--cCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          167 A--GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       167 ~--~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  ....+.++|.++... .....+..+..... --.....+...++. .++.  .|  .+..-..-|.|++||+.+ +.
T Consensus       219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~-fppe~~~DFPvamq-vs~k--yg--viyviTK~G~i~lyDleT-gt  291 (494)
T 1bpo_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEK--HD--VVFLITKYGYIHLYDLET-GT  291 (494)
T ss_dssp             EECSTTCCEEEEEECSCCCTTCCCCCCEEEECC-CCTTSTTCCEEEEE-EETT--TT--EEEEEETTSEEEEEETTT-CC
T ss_pred             EEecCCCcEEEEEEcCCCccCCCCccceeeeee-CCcccccCceeEEE-eccc--CC--EEEEEecCceEEEEeccc-ce
Confidence            1  112378888888543 10011110000000 00012345566666 6664  44  666777889999999999 77


Q ss_pred             ceeeeeccCCCe
Q 024245          244 PLTAMKVHLEPG  255 (270)
Q Consensus       244 ~~~~~~~~~~~v  255 (270)
                      ++..-+-..++|
T Consensus       292 ~i~~nrIs~~~i  303 (494)
T 1bpo_A          292 CIYMNRISGETI  303 (494)
T ss_dssp             EEEEEECCSSCE
T ss_pred             eeeeecccCCce
Confidence            665544333333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.05  E-value=6.5  Score=30.31  Aligned_cols=80  Identities=13%  Similarity=0.047  Sum_probs=49.7

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE--Ee--ecCCCcceEEEEEeeCCC---CCEEE-EE--e
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SW--VHSAAHGIVSVATGPSIG---LNKVI-SQ--G   83 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~--~~~~~~~v~~~~~~~~~~---~~~l~-s~--~   83 (270)
                      +-.--...+.|+|.|+|+++++--..|.|++++...++....  +.  ..........|+++|  +   ...|+ +-  .
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~~  104 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTSA  104 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEECS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEecC
Confidence            333345678999999999887766589999998765543221  11  011225689999998  4   23343 32  2


Q ss_pred             CCCcEEEEEccC
Q 024245           84 RDGTVKCWDIEN   95 (270)
Q Consensus        84 ~d~~i~~wd~~~   95 (270)
                      .++.|.-|.+..
T Consensus       105 ~~~~v~R~~~~~  116 (347)
T 3das_A          105 SDNRIVRMLYDE  116 (347)
T ss_dssp             SSEEEEEEEBCT
T ss_pred             CCCEEEEEEeCC
Confidence            345566666654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.94  E-value=6  Score=29.74  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=33.8

Q ss_pred             CCCEEEEecCC-------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC------CCcEEEEEccC
Q 024245           29 TKPILFAGTTG-------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIEN   95 (270)
Q Consensus        29 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~   95 (270)
                      ++.+++.|+.+       ..+.+||..+.+....-........ .+++. .  ++.+++.|+.      -..+.+||+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            45566666653       3578888877654432111110011 12222 3  5466666654      23577888877


Q ss_pred             Ccc
Q 024245           96 GGL   98 (270)
Q Consensus        96 ~~~   98 (270)
                      .+.
T Consensus       185 ~~W  187 (318)
T 2woz_A          185 GDW  187 (318)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.67  E-value=4.2  Score=33.67  Aligned_cols=78  Identities=10%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceee--ee-ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT--RL-HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~-~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                      +.++|||+++++ +|--+.++.++|.+.-....  .+ ....  ...+... ..--.+..+ |.+   +|. ...+-.-|
T Consensus       328 v~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~--~~~ae~e-~GlGPlHt~-Fd~---~G~-aYTtlfid  398 (638)
T 3sbq_A          328 CNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRD--VIVGEPE-LGLGPLHTT-FDG---RGN-AYTTLFID  398 (638)
T ss_dssp             EEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGG--GEEECCB-CCSCEEEEE-ECS---SSE-EEEEETTT
T ss_pred             eeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCccc--ceEeecc-CCCcccEEE-ECC---CCc-eEeeeeec
Confidence            899999998876 67778999999988432100  00 0000  0000000 111234455 887   453 77777899


Q ss_pred             CcEEEEEcCC
Q 024245          231 GSILVWDIRN  240 (270)
Q Consensus       231 g~i~vwd~~~  240 (270)
                      ..|.-|++..
T Consensus       399 SqvvkWni~~  408 (638)
T 3sbq_A          399 SQVVKWNMEE  408 (638)
T ss_dssp             TEEEEEEHHH
T ss_pred             ceEEEEeccH
Confidence            9999999875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.54  E-value=6.3  Score=29.48  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCcc
Q 024245           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGGL   98 (270)
Q Consensus        29 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~   98 (270)
                      ++++++.|+.+     ..+.+||..+.+....-........- +++..   ++.+++.|+.+     ..+.+||+.+.+.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            56666666643     35888998876544322111111111 22222   43666666654     3577778776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=87.41  E-value=7.9  Score=29.36  Aligned_cols=63  Identities=8%  Similarity=-0.052  Sum_probs=34.9

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE-eecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ..+..+.+.+++..++.+. +|.|.. ....++.-... ....  ..+..+.+.+  ++.+++.+. +|.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~--~~~~~~~~~~--~~~~~~~g~-~G~~  185 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAI--GVMRNLNRSP--SGEYVAVSS-RGSF  185 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCC--CCEEEEEECT--TSCEEEEET-TSSE
T ss_pred             CCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCC--cceEEEEEcC--CCcEEEEEC-CCcE
Confidence            3467788777776666654 554422 12223322222 2222  4588999988  766666554 4443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=87.26  E-value=11  Score=32.18  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +..++++.+.|+++|+|++.+++++.
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t~~lv~  255 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTSFTLIQ  255 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence            44899999999999999999987644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.17  E-value=20  Score=33.72  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=42.2

Q ss_pred             EeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        26 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .+|..+.+|--. ..++.|+|+++.+.++.+...   ..|.-=.|-.  + +.|+-.+ +..|.-|++..
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis--~-~~l~lVT-~~aVyHW~~~~  134 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVT-DNAVYHWSMEG  134 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecC--C-CeeEEEc-CCeEEEeccCC
Confidence            356666666554 578999999988877776654   4466666755  4 5555444 34699999965

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.60  E-value=1.5  Score=31.49  Aligned_cols=91  Identities=7%  Similarity=-0.083  Sum_probs=48.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcce------eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      ++|+|+|. |+++   .+|.+.-.+..+...      -..+-         ...  -..-.++. |.|   +|. +.++ 
T Consensus        46 laf~P~G~-LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~IG---------~~G--w~~F~a~~-fD~---~G~-LYav-  104 (236)
T 1tl2_A           46 LFLSPGGE-LYGV---LNDKIYKGTPPTHDNDNWMGRAKKIG---------NGG--WNQFQFLF-FDP---NGY-LYAV-  104 (236)
T ss_dssp             EEECTTSC-EEEE---ETTEEEEESCCCSTTCCHHHHCEEEE---------CSC--GGGCSEEE-ECT---TSC-EEEE-
T ss_pred             EEECCCcc-EEEE---eCCeEEEECCCCCCcccccccccEec---------ccc--cccceEEE-ECC---CCC-EEEe-
Confidence            78999886 5554   357777777654221      11111         000  11123454 887   464 3333 


Q ss_pred             cCCCcEEEEEcCCCCccee-----eeecc-CCCeeEEEeecCCCc
Q 024245          228 YEDGSILVWDIRNPGIPLT-----AMKVH-LEPGLECSMWRNPIT  266 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~-----~~~~~-~~~v~~~~~s~~g~~  266 (270)
                       .||.|+-++-.+.+.--.     .+-.. =..+..|.|.|+|.+
T Consensus       105 -~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L  148 (236)
T 1tl2_A          105 -SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL  148 (236)
T ss_dssp             -ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred             -CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence             569998887644222111     11100 035788899998865

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.48  E-value=6  Score=35.27  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=29.1

Q ss_pred             ceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      .+.+++..+  +..++++.+.|+++|+|++.+++++.
T Consensus       237 ~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          237 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             CEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             eEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeEe
Confidence            466777777  77899999999999999999987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.20  E-value=14  Score=34.56  Aligned_cols=136  Identities=9%  Similarity=0.027  Sum_probs=77.7

Q ss_pred             CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEee
Q 024245           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL  118 (270)
Q Consensus        39 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (270)
                      ..+|.|-|+.++..+..-+..     --+.-.+|  ..+.++- -...++.+||+++....+  ...+...   ..-+.+
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP--~~~iiAL-rag~~lQiFnl~~k~klk--s~~~~e~---VvfWkW  113 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIAL-KAGKTLQIFNIEMKSKMK--AHTMTDD---VTFWKW  113 (1630)
T ss_pred             CceEEEEECCCCCCccccccc-----chhhccCC--CcceEEE-ecCCeEEEeehHHhhhhc--ccccCCC---ceEEEe
Confidence            347888888876544222111     12344677  6455543 346789999999876654  2222221   111222


Q ss_pred             ccCCccceecCCCCceEEEeccCceeeeccCCCCC--------eEecCCCCeEEEEe-----cCCCceEEEEeCCCccee
Q 024245          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVA-----GEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~-----~~~d~~i~iwd~~~~~~~  185 (270)
                      . ++....+.+...+..|++.....+...+..|..        ...+++.+.++++.     +.-.|.+.+|... .+..
T Consensus       114 i-s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~s  191 (1630)
T 1xi4_A          114 I-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVS  191 (1630)
T ss_pred             c-CCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccc
Confidence            2 344556677788888999766556555555544        45567777665432     1235788888876 3334


Q ss_pred             eeec
Q 024245          186 TRLH  189 (270)
Q Consensus       186 ~~~~  189 (270)
                      +.++
T Consensus       192 Q~ie  195 (1630)
T 1xi4_A          192 QPIE  195 (1630)
T ss_pred             hhhh
Confidence            4455

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.79  E-value=9.5  Score=28.69  Aligned_cols=31  Identities=3%  Similarity=-0.019  Sum_probs=21.8

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCccee
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~  185 (270)
                      ..++|+++.++.+.. ....|.+.++..+...
T Consensus       150 ~~~~~~g~~iy~t~~-g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          150 FTCNTSDRYFYYNNP-KNGQLYRYDTASQSEA  180 (302)
T ss_dssp             CCSEEETTEEEEECT-TTCCEEEEETTTTEEE
T ss_pred             eEeeEECCEEEEEeC-CCceEEEEECCCCCEE
Confidence            567889998876433 4678888888755543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.46  E-value=13  Score=29.98  Aligned_cols=54  Identities=15%  Similarity=0.122  Sum_probs=33.6

Q ss_pred             ccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCc---eeEEEe---ec----CCCcceEEEEEee
Q 024245           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---TVSSSW---VH----SAAHGIVSVATGP   72 (270)
Q Consensus        19 ~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~---~~----~~~~~v~~~~~~~   72 (270)
                      ..-+.|+|.|+|. .|+.+...|.|++++.....   .+..+.   ..    ..+.....|+|+|
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P   78 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP   78 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC
Confidence            4568999999986 44455678999999754321   222111   10    1125688999998

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.77  E-value=2.1  Score=30.69  Aligned_cols=69  Identities=3%  Similarity=-0.141  Sum_probs=42.4

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee-----EEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+....     .+.-+...-..-.++.|.|  +|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--NGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--TSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--CCCEEEe--CCCEEEEeCC
Confidence            46779999999986665  6777766665442111     1111111112247889999  8776666  5688876664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=83.57  E-value=13  Score=28.54  Aligned_cols=53  Identities=21%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             cccEEEEEEeCCCC-EEEEecCCCcEEEEeCCCCceeEEEee-----cCCCcceEEEEEee
Q 024245           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGP   72 (270)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~   72 (270)
                      -...+.|+|.|+|+ +++ +...|.|++++.. +.....+..     .........|+++|
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p   75 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP   75 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC
Confidence            45678999999998 555 4567899999853 332111110     11124578999998

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=83.04  E-value=12  Score=27.67  Aligned_cols=65  Identities=14%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             CCCEEEEec-CC-----CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC-----CcEEEEEccCCc
Q 024245           29 TKPILFAGT-TG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (270)
Q Consensus        29 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~   97 (270)
                      ++.+++.|+ .+     ..+.+||+.+.+....-........ .++. .-  ++..++.|+.+     ..+.+||+.+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SL--HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            345666666 32     4688999887654432111111011 1222 23  44667777754     368899998876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.85  E-value=1.4  Score=40.12  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   57 (270)
                      .+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            45566677788899999999999999999999988764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.07  E-value=16  Score=27.81  Aligned_cols=53  Identities=8%  Similarity=0.035  Sum_probs=28.4

Q ss_pred             CCCEEEEecC-C---------CcEEEEeCCCCceeEEEeec-CCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           29 TKPILFAGTT-G---------GELRIWDTVQHRTVSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        29 ~~~~l~s~~~-d---------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      ++.+++.|+. +         ..+.+||+.+.+....-... .....- ++.. .  ++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~-~~~~-~--~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH-VTFV-H--NGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSE-EEEE-E--TTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccc-eEEE-E--CCEEEEEeCcC
Confidence            5666666765 2         46889999876544322211 111111 2222 4  55777777754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.74  E-value=9.6  Score=31.84  Aligned_cols=60  Identities=7%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             cEEEEEEeCCCCEEEEecCC------------CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE
Q 024245           20 SVTDVCFHQTKPILFAGTTG------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (270)
                      ..--|.|+|.|.+++.-..+            ..+.+.+..+++..+.+.+... ..++.++|+|  +++.|+..
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fsp--Dg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSP--DQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECT--TSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECC--CCCEEEEE
Confidence            34678999999877664322            2456666677777766666543 6799999999  88877654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.09  E-value=3.7  Score=35.04  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV   58 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~   58 (270)
                      ..|.++.+  +..++++-+.|.++|+|++++++++.+...
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            35666655  467999999999999999999998887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 4e-09
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
                 GH + +  +CF         G+     R++D    + + +    +   GI SV+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENG 96
              S     +++   D     WD    
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVWDALKA 302

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 8e-07
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
               +T V F ++  +L AG       +WD ++         H     +  +        
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDD--G 324

Query: 77  NKVISQGRDGTVKCWD 92
             V +   D  +K W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 37/267 (13%), Positives = 81/267 (30%), Gaps = 33/267 (12%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
            LRGH A +  + +     +L + +  G+L IWD+     V +  + S    +++ A   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAY-- 105

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
           +   N V   G D     ++++    +   S  +  ++ +      + +        +  
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 133 KDCYEREVGETVDTDSLCD-SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-------- 183
              ++ E G+   T +        +       + V+G   +  ++WD+            
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 184 ----RCTRLHQN-----SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN----------V 224
                      N     +                 +  Y        +           +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 225 LAGYEDGSILVWDIRNPGIPLTAMKVH 251
           LAGY+D +  VWD          +  H
Sbjct: 286 LAGYDDFNCNVWDALK-ADRAGVLAGH 311

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           D   VL GH   V+ +        +  G+    L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH   V  V FH     + +      LR+WD    R + +   H     + S+ 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF--VTSLD 296

Query: 70  TGPSIGLNKVISQGRDGTVKCWD 92
              +     V++   D TVK W+
Sbjct: 297 FHKT--APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 6  PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
          P P     L GHR+ VT V FH    ++ + +    +++WD        +   H+ +
Sbjct: 5  PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 61

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHG 64
              + H A +  V          + +  G L++WD              S +VH +   
Sbjct: 7  ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 65 IVSVATG---PSIGLNKVISQGRDGTVKCWDIENG 96
           V V       +  L  V +    G +  + I   
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H+  V  V   Q    + +G+    +  WD      +     H  +  ++SVA      L
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--VISVAVANGSSL 364

Query: 77  ----NKVISQGRDGTVKCWDIE 94
               N   +   D   + W  +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------ 61
                   GH+ SV  V F +    + +G+    +++W+       S S   ++      
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 62  ----AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
                  ++SVAT  +     ++S  +D  V  WD ++G
Sbjct: 304 YIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSG 340

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 27/262 (10%), Positives = 67/262 (25%), Gaps = 19/262 (7%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----H 63
            + +  + GH   +T +  +     L +G+  G +  W +       S+ + S       
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              S++   ++ +N +         K     N G ++  +              ++K   
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
            N+  +          VG             D+         +  +              
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQ-----------AYLPSKSQGFVNVLAGYEDGS 232
               + +       +   K                         +      V  G  D +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 233 ILVWDIRNPGIPLTAMKVHLEP 254
           I ++ ++ P   + A+  H + 
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDG 260

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 25  CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84
                            +R+WD    + V    +     G   V    + G  ++IS   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 316

Query: 85  DGTVKCWDI 93
           DGT+  +++
Sbjct: 317 DGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H + V  + F        +      L  W T    ++  S   S+   ++S         
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCDISVD--D 318

Query: 77  NKVISQGRDGTVKCWDI 93
             +++   D     +++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
           ++   +++ +  +       E+ I++   ++ V    +      +  V   P    N++
Sbjct: 9  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRI 66

Query: 80 ISQGRDGTVKCWD 92
          ++ G D     W 
Sbjct: 67 VTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/52 (15%), Positives = 14/52 (26%)

Query: 8  PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             V  L+ H   VT V +      +    T     +W         +  + 
Sbjct: 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 36/277 (12%), Positives = 74/277 (26%), Gaps = 30/277 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
           V  GH  ++T +        LF+    G +  WD +     +  +    A  I  + T  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTS 65

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK----------------- 115
              L        D  +K       G+ S+ ++  K +S                      
Sbjct: 66  KGDLFT---VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 116 --------LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
                     +     ++    +  K        ++               +   + A  
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227
                      L   ++  ++   S   +   +          +    S S   V +  G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 228 YEDGSILVWDIRNP-GIPLTAMKVHLEPGLECSMWRN 263
             D S++VW++  P   P+     H    +   +W N
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 7/67 (10%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSV 68
          V + +  +  ++D+    +K +L   +  G L ++     +  +   + S  +   ++  
Sbjct: 4  VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRYKHPLLCC 62

Query: 69 ATGPSIG 75
              +  
Sbjct: 63 NFIDNTD 69

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
                  V  + F      L+   + G +  W+    + + +       +    V    S
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSVVKIACS 303

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPS 103
              N +     D T K     +  +  N S
Sbjct: 304 --DNILCLATSDDTFKTNAAIDQTIELNAS 331

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 11/233 (4%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
                +   H    T      +     +G   G +RIWDT Q   +  + +   +  +  
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
           ++          + +GR+     +  + G  + N +   +  +    K S      + + 
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
                         ++   +                 A  G     + +++     +   
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-GTIVLYNGVDGTKTGV 226

Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
              +S     +  S            +           +   D +I +W++  
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKI----------ASASADKTIKIWNVAT 269

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
              + +  L GH++  + +       IL +G     ++IWD    + +         +  
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCL---QTLQGPNKH 259

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
            S  T      N VI+   DGTVK WD++ G
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 4  RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
          R        VL+GH   V   C       + +G+    L++W  V  + + +   H+   
Sbjct: 2  RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--G 58

Query: 64 GIVSVATGPSI 74
          G+ S     +I
Sbjct: 59 GVWSSQMRDNI 69

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 8/86 (9%)

Query: 12  AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
             L       +     +           G L  +D    +      V    + +  +   
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLS 323

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGG 97
                  V+ +  DG +  + +E   
Sbjct: 324 AD-R-KTVMVRKDDGKIYTFPLEKPE 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.5
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.85
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.58
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.56
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.48
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.82
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.27
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.01
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.94
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.66
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.27
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.16
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.8
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.11
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.87
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.73
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.69
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.99
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.77
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	83.84

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-35  Score=228.54  Aligned_cols=237  Identities=17%  Similarity=0.214  Sum_probs=179.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      ++.++|+||++.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|.  .+|.+++|+|  +++++++++.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~v~~~~--~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC--SCEEEEEECT--TSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccc--ccEEeeEeec--cceeeeeeccccee
Confidence            5678899999999999999999999999999999999999999999999988  6699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceE-----------------------------------------EEEeeccC-Cccce
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHF-----------------------------------------CKLSLVKE-PYANA  126 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~-~~~~~  126 (270)
                      ++|+.............+..+....                                         ........ .....
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9999876543321111111111000                                         00000000 01112


Q ss_pred             ecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC
Q 024245          127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (270)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~  202 (270)
                      ....+...+|++..++.+. .+.+|..    ++|+|+++.++  +|+.|+.|++||++..+.+..+...      .    
T Consensus       202 ~~~d~~v~i~d~~~~~~~~-~~~~h~~~i~~v~~~p~~~~l~--s~s~d~~i~~~~~~~~~~~~~~~~~------~----  268 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYSHD------N----  268 (340)
T ss_dssp             EETTTEEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCT------T----
T ss_pred             eecCceEEEEECCCCcEEE-EEeCCCCCeEEEEECCCCCEEE--EEeCCCeEEEEeecccccccccccc------c----
Confidence            2233456677877776554 4556665    89999998554  4667999999999988887776521      1    


Q ss_pred             CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ....+.++. |+|+   ++ +|++|+.||.|++||+.+ ++++..+.+|.++|++++|+||+.+|.
T Consensus       269 ~~~~i~~~~-~s~~---~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         269 IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             CCSCEEEEE-ECSS---SC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             ccCceEEEE-ECCC---CC-EEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence            234577787 9985   44 999999999999999998 899999999999999999999998763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-34  Score=220.28  Aligned_cols=234  Identities=15%  Similarity=0.246  Sum_probs=171.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEee----------------
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP----------------   72 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~----------------   72 (270)
                      ...++|+||++.|++++|+|++++|+||+.||+|+|||+++++.+..+.+|.  ..|.+++|+|                
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~--~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC--CcEEEEeeeccccccccccccccccc
Confidence            3457899999999999999999999999999999999999998888887776  4466666665                


Q ss_pred             ------------------------CCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-ee
Q 024245           73 ------------------------SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AK  127 (270)
Q Consensus        73 ------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  127 (270)
                                              ..+++.+++++.|+.+++||+++++...    .+..+......+......... ..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK----TFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee----EEccCCCcceeeecccCCCEEEEE
Confidence                                    0145667777888888888887765432    444444444434433322222 22


Q ss_pred             cCCCCceEEEeccCceeeeccCCCCC----eEecCCCC-------------------eEEEEecCCCceEEEEeCCCcce
Q 024245          128 QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP-------------------KYMAVAGEQLSEVEIWDLNTAER  184 (270)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~-------------------~~~~~~~~~d~~i~iwd~~~~~~  184 (270)
                      ...+...+|+....+.... +.++..    +.++|++.                   .+++ +++.|+.|++||++++++
T Consensus       162 ~~d~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEE
T ss_pred             eCCCeEEEEeeccceeeEE-EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE-eccCCCEEEEEECCCCcE
Confidence            3345566777776654432 223332    44444321                   1333 567799999999999999


Q ss_pred             eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCC
Q 024245          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       185 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +.++.        +|.    ..+.+++ |+|+   ++ +|++|+.||.|++||+++ ++++..+.+|.+.|++++|+|++
T Consensus       240 ~~~~~--------~~~----~~v~~~~-~~~~---~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~  301 (317)
T d1vyhc1         240 LMTLV--------GHD----NWVRGVL-FHSG---GK-FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTA  301 (317)
T ss_dssp             EEEEE--------CCS----SCEEEEE-ECSS---SS-CEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSS
T ss_pred             EEEEe--------CCC----CCEEEEE-ECCC---CC-EEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCC
Confidence            99998        663    4677787 9995   44 899999999999999999 89999999999999999999999


Q ss_pred             Ccee
Q 024245          265 ITMS  268 (270)
Q Consensus       265 ~~ls  268 (270)
                      .+|.
T Consensus       302 ~~l~  305 (317)
T d1vyhc1         302 PYVV  305 (317)
T ss_dssp             SCEE
T ss_pred             CEEE
Confidence            8763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9e-33  Score=216.45  Aligned_cols=237  Identities=13%  Similarity=0.098  Sum_probs=169.2

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc--eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccC
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~   95 (270)
                      .++|+|++|+|+|++||+|+.||.|+|||+.+++  .+..+.+|.  ++|.+++|+|  ++++|++++.|++|++||+.+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~--~~V~~l~fsp--~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCC--CCEEEEEECC--CCCEEEEEECCCeEEEEeecc
Confidence            4789999999999999999999999999998775  566778887  6699999999  999999999999999999987


Q ss_pred             CccCCCCccceecccceEEEEeeccCCcccee-cCCCCceEEEeccCce---eeeccCCCCC----eEecCCCCeEEEEe
Q 024245           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGET---VDTDSLCDSK----DDVPAEGPKYMAVA  167 (270)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~s~~~~~~~~~~  167 (270)
                      +....  ...+..+......+.+......... ...+...+|++.....   .......|..    ++|+|++.+++  +
T Consensus        83 ~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~--s  158 (371)
T d1k8kc_          83 RTWKP--TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA--A  158 (371)
T ss_dssp             TEEEE--EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE--E
T ss_pred             ccccc--ccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccccee--c
Confidence            75432  3333344434444444333322222 2344556777765442   2334455555    88999998653  5


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCC------CCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGG------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~  241 (270)
                      |+.|++|++||.................      ...........+.+++ |+|+   |+ +|++++.|+.|++||+.+ 
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~s~~~d~~i~iwd~~~-  232 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSAN---GS-RVAWVSHDSTVCLADADK-  232 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECSS---SS-EEEEEETTTEEEEEEGGG-
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE-eecc---cc-cccccccCCcceEEeeec-
Confidence            6779999999987543221111000000      0000011244678887 9995   45 899999999999999998 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCcee
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ++++..+..|..+|++++|+||+.+|+
T Consensus       233 ~~~~~~~~~~~~~v~s~~fs~d~~~la  259 (371)
T d1k8kc_         233 KMAVATLASETLPLLAVTFITESSLVA  259 (371)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             ccceeeeecccccceeeeecCCCCEEE
Confidence            888999999999999999999998875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-32  Score=206.98  Aligned_cols=235  Identities=11%  Similarity=0.141  Sum_probs=173.9

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEeecCCCcceEEEEEeeCCCCCEEEEEeC-
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (270)
                      ++..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..  ..+..|.  .+|.+++|+|  ++++|++++. 
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--d~~~l~~~~~~  123 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGEG  123 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEECC
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc--Cccccccccc--ccccccccccc
Confidence            4677788999999999999999999999999999999999887644  4566676  6799999999  9999998875 


Q ss_pred             -CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeeccCCCCC----eEec
Q 024245           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (270)
Q Consensus        85 -d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s  157 (270)
                       +..+++|++++++...    .+..+......+.+......  ......+...+|+++..+... ...+|..    +.|+
T Consensus       124 ~~~~~~v~~~~~~~~~~----~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-~~~~~~~~i~~v~~~  198 (311)
T d1nr0a1         124 RERFGHVFLFDTGTSNG----NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYN  198 (311)
T ss_dssp             SSCSEEEEETTTCCBCB----CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-EECCCSSCEEEEEEC
T ss_pred             ccccccccccccccccc----cccccccccccccccccceeeeccccccccccccccccccccc-ccccccccccccccC
Confidence             4569999999886544    44444444444444332222  222345667889988776554 4445554    8999


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      |+++.++  +++.|+.|++||+++++.+..+.... ....+|    ...+.+++ |+|+   ++ +|++|+.||.|+|||
T Consensus       199 p~~~~l~--~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~~~h----~~~V~~~~-~s~~---~~-~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         199 PDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKIWN  266 (311)
T ss_dssp             TTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT-SSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEE
T ss_pred             ccccccc--cccccccccccccccccccccccccc-cccccc----cccccccc-cCCC---CC-EEEEEeCCCeEEEEE
Confidence            9998654  45669999999999998887776311 111234    45688888 9995   44 999999999999999


Q ss_pred             cCCCCcceeeeeccCC---CeeEEEeecCC
Q 024245          238 IRNPGIPLTAMKVHLE---PGLECSMWRNP  264 (270)
Q Consensus       238 ~~~~~~~~~~~~~~~~---~v~~~~~s~~g  264 (270)
                      +++ ++++.++..|..   .+.++.|+++.
T Consensus       267 ~~t-~~~~~~l~~~~~~~~~~~~~~~~~~~  295 (311)
T d1nr0a1         267 VAT-LKVEKTIPVGTRIEDQQLGIIWTKQA  295 (311)
T ss_dssp             TTT-TEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             CCC-CcEEEEEECCCCccceEEEEEecCCE
Confidence            998 888888887653   34556665543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=207.57  Aligned_cols=227  Identities=16%  Similarity=0.207  Sum_probs=167.5

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEE--eecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSS--WVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      .++++ +|...|++++|+|+|++|++|+ ||.|+|||+.++..   +..+  ..|.  ..|.+++|+|  ++++|++++.
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~--~~I~~v~~s~--dg~~l~s~~~  117 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGE  117 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEES
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC--CcEEEEEEcC--CCCEEEEeec
Confidence            44555 6999999999999999999998 89999999976532   2333  3454  6799999999  9999999999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccce-ecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      ||.|++||+.......  ...+..+......+.+........ ........+|++.+.+... ...+|..    ++|+++
T Consensus       118 dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISND  194 (337)
T ss_dssp             SSEEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            9999999997654321  223444444444344333322222 2334556778888776554 3344444    889999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +..++  +++.|+.|++||+++++.+..+.             ....+.+++ |+|+   ++ +|++|+.||.|++||++
T Consensus       195 ~~~~~--~~~~d~~v~i~d~~~~~~~~~~~-------------~~~~i~~l~-~~~~---~~-~l~~~~~d~~i~i~d~~  254 (337)
T d1gxra_         195 GTKLW--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             SSEEE--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETT
T ss_pred             ccccc--cccccccccccccccceeecccc-------------cccceEEEE-Eccc---cc-ccceecccccccccccc
Confidence            98665  45568999999999999887776             245678888 9995   44 89999999999999999


Q ss_pred             CCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          240 NPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      + .+. .....|...|++++|+|+|++|
T Consensus       255 ~-~~~-~~~~~~~~~i~~v~~s~~g~~l  280 (337)
T d1gxra_         255 K-PDK-YQLHLHESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             S-SCE-EEECCCSSCEEEEEECTTSSEE
T ss_pred             c-ccc-ccccccccccceEEECCCCCEE
Confidence            7 444 3556789999999999999876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-31  Score=202.77  Aligned_cols=233  Identities=14%  Similarity=0.128  Sum_probs=163.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe-ecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      +..++++||++.|++++|+|++++|++|+.||.|++||++++++++.+. .|.  ..|.+++|+|  ++. +++++.|+.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~--~~v~~v~~~~--~g~-~~~~~~d~~   77 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA--TMITGIKTTS--KGD-LFTVSWDDH   77 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS--SCEEEEEECT--TSC-EEEEETTTE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--CcEEEEEeec--cce-eecccceee
Confidence            4578899999999999999999999999999999999999999888774 465  6699999999  865 667778999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      +++|+......... .............+.+................+|+..  + .......+..  ++|+|+++.++ 
T Consensus        78 v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~-~~~~~~~~~~~~~~~s~~~~~l~-  152 (299)
T d1nr0a2          78 LKVVPAGGSGVDSS-KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--K-LTEVPISYNSSCVALSNDKQFVA-  152 (299)
T ss_dssp             EEEECSSSSSSCTT-SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--E-EEEEECSSCEEEEEECTTSCEEE-
T ss_pred             EEEeccCCcccccc-ccccccccccccccccccccccccccccccccccccc--c-ccccccccccccccccccccccc-
Confidence            99999876543221 1111122222222333322222223333333444422  2 2222223333  89999997554 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc--
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--  243 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~--  243 (270)
                       +|+.|+.|++||+++++.......       .|    ...+.+++ |+|+   +. +|++++.||.|++||+.+...  
T Consensus       153 -~g~~dg~i~~~d~~~~~~~~~~~~-------~~----~~~i~~~~-~~~~---~~-~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         153 -VGGQDSKVHVYKLSGASVSEVKTI-------VH----PAEITSVA-FSNN---GA-FLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             -EEETTSEEEEEEEETTEEEEEEEE-------EC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEEGGGTTEES
T ss_pred             -cccccccccccccccccccccccc-------cc----cccccccc-cccc---cc-ccccccccccccccccccccccc
Confidence             566799999999987765443322       34    34678887 9995   44 899999999999999987322  


Q ss_pred             ceeeeeccCCCeeEEEeecCCCcee
Q 024245          244 PLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       244 ~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ....+.+|...|++++|+|++.+|.
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccceE
Confidence            3345677999999999999998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-31  Score=201.35  Aligned_cols=225  Identities=15%  Similarity=0.110  Sum_probs=171.8

Q ss_pred             ccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      +++.+..++++|+|+.|+.++ ++.|.+||+.+.+..+.+.+|.  ..|.+++|+|  +|++|++|+.||+|++||+.++
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~--~~v~~~~~sp--~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCC--CCEEEEEEeC--CCCeEeccccCceEeeeeeecc
Confidence            344566889999999999886 5679999999999999999888  6699999999  9999999999999999999987


Q ss_pred             ccCCCCccceecccceEEEEeeccCCccceecCC---CCceEEEeccCceeeeccCCCCC----eEecCCCCeEEEEecC
Q 024245           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (270)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~  169 (270)
                      ....  ...+..+......+.+............   ....+|+...++... .+.+|..    ++|+|+++++++ +|+
T Consensus        91 ~~~~--~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~-~l~~h~~~v~~v~~~~~~~~~l~-sgs  166 (311)
T d1nr0a1          91 THIL--KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG-NLTGQARAMNSVDFKPSRPFRII-SGS  166 (311)
T ss_dssp             TCCE--EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB-CCCCCSSCEEEEEECSSSSCEEE-EEE
T ss_pred             cccc--ccccccccCccccccccccccccccccccccccccccccccccccc-cccccccccccccccccceeeec-ccc
Confidence            6432  2334444444444444333322222222   224567777665443 5566666    889999987665 677


Q ss_pred             CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-
Q 024245          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-  248 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-  248 (270)
                      .|+.|++||+++++....+.        +|    ...+.++. |+|+   ++ +|++++.||.|++||+++ +.....+ 
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~v~-~~p~---~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~  228 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFG--------EH----TKFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVFE  228 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEECB
T ss_pred             cccccccccccccccccccc--------cc----cccccccc-cCcc---cc-cccccccccccccccccc-cccccccc
Confidence            79999999999999888887        56    34678888 9995   44 999999999999999998 5555444 


Q ss_pred             ------eccCCCeeEEEeecCCCcee
Q 024245          249 ------KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ------~~~~~~v~~~~~s~~g~~ls  268 (270)
                            .+|...|++++|+|++++|-
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccCCCCCEEE
Confidence                  36888999999999998863

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.8e-30  Score=198.30  Aligned_cols=226  Identities=13%  Similarity=0.184  Sum_probs=170.5

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ...+|.+.|++++|+|++++|++|+.||.|++||+...  +....+..|.  ..|..++|+|  ++.++++++.|+.|++
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~~~d~~i~~  167 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISP--DSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccc--cccccccccc--cccccccccccccccc
Confidence            45679999999999999999999999999999998754  4556666776  5699999999  9999999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeecc-CCCCC-eEecCCCCeEEEEe
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDS-LCDSK-DDVPAEGPKYMAVA  167 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~~~~~~~~  167 (270)
                      ||+.+++...    ....+......+.+....... .....+...+|++.+++.+...- ..... ++|+|+++.++  +
T Consensus       168 ~~~~~~~~~~----~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~--~  241 (337)
T d1gxra_         168 WDLHNQTLVR----QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--V  241 (337)
T ss_dssp             EETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE--E
T ss_pred             cccccccccc----cccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccc--e
Confidence            9999886533    333344444444433332222 22334556778888877654322 11111 88999998655  4


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~  247 (270)
                      ++.|+.|++||+++++.....         .|    ...+.+++ |+|+   ++ +|++|+.||.|++||+.+ ++++..
T Consensus       242 ~~~d~~i~i~d~~~~~~~~~~---------~~----~~~i~~v~-~s~~---g~-~l~s~s~Dg~i~iwd~~~-~~~~~~  302 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDKYQLH---------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQ  302 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEEC---------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCEEEE
T ss_pred             ecccccccccccccccccccc---------cc----ccccceEE-ECCC---CC-EEEEEeCCCeEEEEECCC-CCEEEE
Confidence            566899999999988765433         34    34678888 9995   55 999999999999999998 777777


Q ss_pred             eeccCCCeeEEEeecCCCcee
Q 024245          248 MKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       248 ~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +. |...|++++|+||+++|.
T Consensus       303 ~~-~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         303 SK-ESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             EE-CSSCEEEEEECTTSCEEE
T ss_pred             cc-CCCCEEEEEEeCCCCEEE
Confidence            65 788999999999998763

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.3e-31  Score=202.51  Aligned_cols=231  Identities=17%  Similarity=0.190  Sum_probs=163.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +++++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|.  ..|.++.+++  + ..+++++.|+++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~--~~V~~~~~~~--~-~~~~s~s~D~~v   69 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHS--NLIVSLDNSK--A-QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCC--SCEEEEECCS--T-TCCEEEETTTEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCC--CCEEEEEecC--C-CeEEEEeecccc
Confidence            68899999999999999987    999999999999998753     34666  5699999987  6 678999999999


Q ss_pred             EEEEccCCccCCCCccc-------------------eecc----------cceEEEEeeccCCccceecCCCCceEEEec
Q 024245           89 KCWDIENGGLSSNPSLT-------------------IKTN----------SYHFCKLSLVKEPYANAKQANEPKDCYERE  139 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~-------------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (270)
                      ++|++...+....+...                   ....          ......+.............+....+|++.
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecc
Confidence            99998654322111000                   0000          000111111111111122223445677776


Q ss_pred             cCceeeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCC
Q 024245          140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (270)
Q Consensus       140 ~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (270)
                      ..+........+..    ++|+|++.+++  +|+.||.|++||+.+++.......       +|    ...+.+++ |+|
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~g~~dg~i~i~d~~~~~~~~~~~~-------~h----~~~v~~~~-~~p  215 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSETYIA--AGDVMGKILLYDLQSREVKTSRWA-------FR----TSKINAIS-WKP  215 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEECCSC-------CC----SSCEEEEE-ECC
T ss_pred             ccceeeeeeeccCCceeEEEeccCccccc--cccccccccceeeccccccccccc-------cc----ccccceee-ecc
Confidence            65554444444443    89999998655  466799999999998886554332       56    34577777 887


Q ss_pred             CC-------CCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          216 SK-------SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       216 ~~-------~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ..       .++. +|++|+.|++|++||++++.+.+..+.+|...|++++|+|++.+++
T Consensus       216 ~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         216 AEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             CC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             cccccccccCCCC-eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            53       2445 8999999999999999887788888899999999999999998776

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-30  Score=196.54  Aligned_cols=234  Identities=17%  Similarity=0.301  Sum_probs=159.0

Q ss_pred             CCCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         7 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.++.++|+||++.|.+ +++++|++||||+.||+|+|||+.++++++++.+|.  ..|.+++|+|    ++|++++.|+
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~--~~V~~v~~~~----~~l~s~s~D~   77 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD----NIIISGSTDR   77 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS--SCEEEEEEET----TEEEEEETTS
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC--CCEEEEEeCC----Cccccceecc
Confidence            34678899999999865 366678999999999999999999999999999998  6699999988    5999999999


Q ss_pred             cEEEEEccCCccCCC------Ccccee------------------------------c----------------------
Q 024245           87 TVKCWDIENGGLSSN------PSLTIK------------------------------T----------------------  108 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~------~~~~~~------------------------------~----------------------  108 (270)
                      .+++|+.........      ......                              .                      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999865432110      000000                              0                      


Q ss_pred             ------------------ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEec
Q 024245          109 ------------------NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAG  168 (270)
Q Consensus       109 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~  168 (270)
                                        +.......... ..........+...+|++...+.+. .+.+|..  .++++++++++  ++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~--s~  233 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILV--SG  233 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEE--EE
T ss_pred             eEEEeecccceeeEEEcCcccccccccCC-CCEEEEEeCCCeEEEeecccceeee-EecccccceeEEecCCCEEE--EE
Confidence                              00000000000 0000111223344556666555443 3444544  55666666443  46


Q ss_pred             CCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee
Q 024245          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~  248 (270)
                      +.|+.|++||+...+....+.        ++.. ....+.++. ++|+      ++++|+.||.|++||+++ ++++..+
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~--------~~~~-~~~~~~~~~-~~~~------~~~s~s~Dg~i~iwd~~t-g~~i~~~  296 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQ--------GPNK-HQSAVTCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEFIRNL  296 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC--------STTS-CSSCEEEEE-ECSS------EEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred             cCCCEEEEEeccccccccccc--------ccce-eeeceeecc-cCCC------eeEEEcCCCEEEEEECCC-CCEEEEE
Confidence            668899999988888777776        3322 234555665 6653      899999999999999999 7877776


Q ss_pred             e-----ccCCCeeEEEeecCCCcee
Q 024245          249 K-----VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       249 ~-----~~~~~v~~~~~s~~g~~ls  268 (270)
                      .     +|...|++++|+|++.+|.
T Consensus       297 ~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         297 VTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             EECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             ecccCCCCCCCEEEEEECCCCCEEE
Confidence            4     5778899999999998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.6e-30  Score=199.85  Aligned_cols=236  Identities=19%  Similarity=0.237  Sum_probs=165.8

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC----------------CCcceEEEEEeeCCCCCE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIGLNK   78 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~   78 (270)
                      .+|++.|+|++|+|+|++||+|+ |+.|+|||+.+++.+..+..+.                +...|.+++|+|  ++++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC--CCCc
Confidence            36999999999999999999987 8999999999988777664321                225599999999  9999


Q ss_pred             EEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC--eE
Q 024245           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK--DD  155 (270)
Q Consensus        79 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  155 (270)
                      |++|+.||.|++||...++...    ....+......+......... .....+...+|+................  +.
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             ceeccccccccccccccccccc----ccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            9999999999999999876543    444444444444443333222 2333455677888777655543332222  55


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEE
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~v  235 (270)
                      +.+....+++ +++.|+.|++||.+++.....+.... ....+|    ...+.++. |+|+   ++ +|++|+.||.|++
T Consensus       212 ~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~~h----~~~v~~l~-~s~~---~~-~l~s~~~d~~i~i  280 (388)
T d1erja_         212 VSPGDGKYIA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVKL  280 (388)
T ss_dssp             ECSTTCCEEE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEE
T ss_pred             ccCCCCCeEE-EEcCCCeEEEeecccCccceeecccc-ccccCC----CCCEEEEE-ECCC---CC-EEEEEECCCcEEE
Confidence            6554434454 56679999999999998877765211 011123    45688888 9995   44 9999999999999


Q ss_pred             EEcCCCC-----------cceeeeeccCCCeeEEEeecCCCcee
Q 024245          236 WDIRNPG-----------IPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       236 wd~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                      ||+++..           ........|...|++++|+|+|.+|.
T Consensus       281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred             EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEE
Confidence            9997632           23445567889999999999998763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-29  Score=193.20  Aligned_cols=236  Identities=14%  Similarity=0.144  Sum_probs=170.3

Q ss_pred             Cccccccccc-ccEEEEEEeC--CCCEEEEecCCCcEEEEeCCCCceeE--------EEeecCCCcceEEEEEeeCCCCC
Q 024245            9 DPVAVLRGHR-ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVS--------SSWVHSAAHGIVSVATGPSIGLN   77 (270)
Q Consensus         9 ~~~~~~~~h~-~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~   77 (270)
                      ..+..+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..++...        .+..+.  .+|.+++|++  +++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~  128 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDF--EGR  128 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECT--TSS
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc--CcEEEEEECC--CCC
Confidence            3456777874 6899999998  67899999999999999997654322        234455  6699999999  989


Q ss_pred             EEEEEeC--CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCcc--ceecCCCCceEEEeccCceeeec--cCCC
Q 024245           78 KVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTD--SLCD  151 (270)
Q Consensus        78 ~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~  151 (270)
                      +|++++.  ++.+++|+.++++...    .+..+......+.+......  ......+...+|+....+.....  ..+|
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  204 (325)
T d1pgua1         129 RLCVVGEGRDNFGVFISWDSGNSLG----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  204 (325)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCEEE----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             ccceeeccccceEEEEeecccccce----eeeecccccccccccccccceEEEeecccccccccccccccceecccccCC
Confidence            8887654  6789999999886543    44555544444444433322  22334566777888776654433  3344


Q ss_pred             CC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       152 ~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      ..    ++|+|++..+++ +++.|+.|++||+++++.+..+.        +|.......++++. |.    +|+ +|+++
T Consensus       205 ~~~v~~v~~~pd~~~~l~-s~~~d~~i~iwd~~~~~~~~~l~--------~~~~~v~~~~~s~~-~~----dg~-~l~s~  269 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVI-TVGSDRKISCFDGKSGEFLKYIE--------DDQEPVQGGIFALS-WL----DSQ-KFATV  269 (325)
T ss_dssp             TCCEEEEEECSTTCCEEE-EEETTCCEEEEETTTCCEEEECC--------BTTBCCCSCEEEEE-ES----SSS-EEEEE
T ss_pred             CCccEEeeeccccceecc-ccccccceeeeeecccccccccc--------ccccccccceeeee-cc----CCC-EEEEE
Confidence            44    889998766665 55679999999999999999998        67666666666665 54    455 89999


Q ss_pred             cCCCcEEEEEcCCCCcceeeeeccCCCe----eEEEeecCCCcee
Q 024245          228 YEDGSILVWDIRNPGIPLTAMKVHLEPG----LECSMWRNPITMS  268 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v----~~~~~s~~g~~ls  268 (270)
                      +.|+.|+|||+++ ++++..+..|...+    .++.|.+++.++|
T Consensus       270 s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  313 (325)
T d1pgua1         270 GADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIIS  313 (325)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred             eCCCeEEEEECCC-CCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence            9999999999998 88888887766543    2455666776665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-29  Score=197.76  Aligned_cols=238  Identities=19%  Similarity=0.287  Sum_probs=163.9

Q ss_pred             cccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      ..+|...|++++|+|++++|++|+.||.|++||...++.+..+.+|.  ..|.++.|++  ++..+++++.++.+++||.
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFP--SGDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccc--cccccccccc--ccccccccccceeeeeeec
Confidence            44688889999999999999999999999999999999999998888  6699999999  8899999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCc-cceecCCCCceEEEeccCceeee------ccCCCCC----eEecCCCCe
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDT------DSLCDSK----DDVPAEGPK  162 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~s~~~~~  162 (270)
                      ++.....    ................... .......+...+|+...+.....      ...+|..    ++|+|+++.
T Consensus       193 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  268 (388)
T d1erja_         193 RTGQCSL----TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  268 (388)
T ss_dssp             TTTEEEE----EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             ccccccc----ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE
Confidence            8875432    2222222222111111111 12233445677788877665433      2234544    899999986


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++  +++.|+.|++||+++++.......................+.+++ |+|+   ++ +|++|+.||.|++||+++ +
T Consensus       269 l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---~~-~l~sg~~dg~i~vwd~~~-~  340 (388)
T d1erja_         269 VV--SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQN---DE-YILSGSKDRGVLFWDKKS-G  340 (388)
T ss_dssp             EE--EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE-ECGG---GC-EEEEEETTSEEEEEETTT-C
T ss_pred             EE--EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE-ECCC---CC-EEEEEeCCCEEEEEECCC-C
Confidence            54  466799999999987654333221000000000011244678887 9985   44 999999999999999999 8


Q ss_pred             cceeeeeccCCCeeEEEe------ecCCCce
Q 024245          243 IPLTAMKVHLEPGLECSM------WRNPITM  267 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~------s~~g~~l  267 (270)
                      +++..+++|.+.|+++++      +|++.+|
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l  371 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVF  371 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence            999999999999999875      5677665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-29  Score=194.23  Aligned_cols=244  Identities=10%  Similarity=0.078  Sum_probs=155.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEE---EeecCCCcceEEEEEeeCCC-CCEEEEEeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIG-LNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~   84 (270)
                      +.++.+++|++.|++|+|+|++++||+|+.||+|+|||+..+.....   ...|.  .+|.+++|+|  + +.+|++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~--~~V~~v~f~~--~~~~~l~sg~~   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFID--NTDLQIYVGTV   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEE--SSSEEEEEEET
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCC--CCEEEEEEeC--CCCCEEEEccc
Confidence            46788899999999999999999999999999999999977644332   23566  6799999998  5 457899999


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceee---eccCCCCC------eE
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK------DD  155 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~  155 (270)
                      |+.|++|++.......  ................................+|+++......   .....+..      ..
T Consensus        78 d~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             TSCEEEECSSSSSSEE--ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             ccceeeeecccccccc--cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence            9999999998775432  1111111222222222222233333445556677765433211   11222111      55


Q ss_pred             ecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc--------------------------------CC---------
Q 024245          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------------------CG---------  194 (270)
Q Consensus       156 ~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------~~---------  194 (270)
                      +.+.+..++  +++.|+.|++||++..+.........                                ..         
T Consensus       156 ~~~~~~~~~--~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         156 MDTNSSRLI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEECSSEEE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eeccCCcee--eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence            667776554  35568999999986554221110000                                00         


Q ss_pred             --------CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          195 --------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       195 --------~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                              ............+.+++ |+|+   ++ +|++|+.||.|++||+++ ++.+..+..+ ..+..++|+|+|.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~-~sp~---~~-~lasg~~Dg~v~vWD~~~-~~~l~~~~~~-~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIE-FSPR---HK-FLYTAGSDGIISCWNLQT-RKKIKNFAKF-NEDSVVKIACSDNI  306 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEE-ECTT---TC-CEEEEETTSCEEEEETTT-TEEEEECCCC-SSSEEEEEEECSSE
T ss_pred             ccceeeeeeeccCCCcccccceeEE-ecCC---cc-EEEEECCCCEEEEEECCC-CcEEEEecCC-CCCEEEEEEeCCCE
Confidence                    00000011123456787 9995   44 899999999999999999 7878777643 35566788888876


Q ss_pred             e
Q 024245          267 M  267 (270)
Q Consensus       267 l  267 (270)
                      |
T Consensus       307 l  307 (342)
T d1yfqa_         307 L  307 (342)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.2e-27  Score=185.62  Aligned_cols=205  Identities=14%  Similarity=0.048  Sum_probs=144.1

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE--eecCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~   86 (270)
                      +.+..+++|.+.|++++|+|++++|++|+.|+.|+|||+.++.....+  ..|.  ..|.+++|+|  +++.|++++.|+
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~--~~v~~i~~~p--~~~~l~~~s~d~  117 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAP--NEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECT--TSSEEEEEETTS
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccc--cccccccccc--ccccceeecccC
Confidence            467889999999999999999999999999999999999887655444  4454  6799999999  999999999999


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceec---CCCCceEEEeccCc-----------------eeee
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ---ANEPKDCYEREVGE-----------------TVDT  146 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~  146 (270)
                      +|++|+++..............+......+.  +++....+.   ..+...+|+.....                 ....
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~--~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKPIRSTVLSLD--WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEE--ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             cceeeeeeccccccccccccccccccccccc--ccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence            9999999876532211111122223333333  333333222   34556677765432                 1122


Q ss_pred             ccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          147 DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       147 ~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                      ...+|..    ++|+|+++.++  +++.|+.|++||+.+++.+..+.        +|.    ..+.+++ |+|+   ++ 
T Consensus       196 ~~~~~~~~v~~~~~s~~g~~l~--s~~~d~~i~iwd~~~~~~~~~~~--------~~~----~~v~s~~-fs~d---~~-  256 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGSRVA--WVSHDSTVCLADADKKMAVATLA--------SET----LPLLAVT-FITE---SS-  256 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSSEEE--EEETTTEEEEEEGGGTTEEEEEE--------CSS----CCEEEEE-EEET---TE-
T ss_pred             eccCccCcEEEEEeeccccccc--ccccCCcceEEeeecccceeeee--------ccc----ccceeee-ecCC---CC-
Confidence            3344444    78999998654  45679999999999999998888        553    3577887 9984   54 


Q ss_pred             EEEEecCCCcEEEEEcC
Q 024245          223 NVLAGYEDGSILVWDIR  239 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~  239 (270)
                      +|++| .|+.+++|+..
T Consensus       257 ~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         257 LVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             EEEEE-TTSSCEEEEEE
T ss_pred             EEEEE-cCCceEEEEee
Confidence            66655 47777776544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-27  Score=183.15  Aligned_cols=222  Identities=18%  Similarity=0.265  Sum_probs=157.1

Q ss_pred             ccccccccccE-EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           11 VAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        11 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      ..+|+||...| +|++|  ++++||+|+.||+|+|||+.+++++.++.+|.  ++|.+++|+|  + ++|++++.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~l~~s~--~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAH--G-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEEET--T-TEEEEEETTCCEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCC--CCEEEEEEcC--C-CEEEEEecccccc
Confidence            45799998885 66665  57899999999999999999999999999998  6699999998  6 6899999999999


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCcc---ceecCCCCceEEEeccCceeeecc------------------
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDS------------------  148 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------------  148 (270)
                      +|++...+...    .................+..   ......+...+|++..........                  
T Consensus        78 iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          78 VWDIKKGCCTH----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             EEETTTTEEEE----EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             ccccccccccc----ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            99998876432    11111111111112222222   222334556677776544322111                  


Q ss_pred             ----CCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          149 ----LCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       149 ----~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                          ..|..  ..+.+++..++  ++..|+.|++||+++++.+..+.        ++    .....++. |+|.   +. 
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~i~~~d~~~~~~~~~~~--------~~----~~~~~~~~-~~~~---~~-  214 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GH----TDRIYSTI-YDHE---RK-  214 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-EETT---TT-
T ss_pred             eeeeeeccccccccccccceee--eecccceeeeeecccccceeeee--------cc----cccccccc-cccc---ce-
Confidence                11111  34556676544  45668999999999999888777        34    23455665 8885   33 


Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecC
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                      ++++++.|+.|++||+++ +.++..+.+|...|++++|+++
T Consensus       215 ~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~~  254 (355)
T d1nexb2         215 RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSDK  254 (355)
T ss_dssp             EEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEECSS
T ss_pred             eeecccccceEEeeeccc-cccccccccccccccccccccc
Confidence            899999999999999998 8889999999999999999764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.7e-26  Score=172.98  Aligned_cols=201  Identities=12%  Similarity=0.224  Sum_probs=155.4

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +....+.+|...+.++.|+|++..+++++.|+.+++||+++++.+..+..|.  ..+.+++|+|  ++++|++++.|+.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQ--DGTLIASCSNDQTV  167 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCE
T ss_pred             ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceeeeccc--CCCEEEEEeCCCeE
Confidence            4556677899999999999999999999999999999999999999999888  5699999999  99999999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCc---------------------cceecCCCCceEEEeccCceeeec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---------------------ANAKQANEPKDCYEREVGETVDTD  147 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  147 (270)
                      ++|++.+++...    .+..+......+.......                     .......+...+|++.+++.+. .
T Consensus       168 ~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~  242 (317)
T d1vyhc1         168 RVWVVATKECKA----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-T  242 (317)
T ss_dssp             EEEETTTCCEEE----EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred             EEEeeccceeeE----EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE-E
Confidence            999999876432    3333333333222221111                     1111223445667877776554 3


Q ss_pred             cCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceE
Q 024245          148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (270)
Q Consensus       148 ~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (270)
                      +.+|..    ++|+|+++.++  +|+.||.|+|||+++++++.++.        +|.    ..+++++ |+|+   ++ +
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~--------~h~----~~V~~~~-~s~~---~~-~  303 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFIL--SCADDKTLRVWDYKNKRCMKTLN--------AHE----HFVTSLD-FHKT---AP-Y  303 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEE--EEETTTEEEEECCTTSCCCEEEE--------CCS----SCEEEEE-ECSS---SS-C
T ss_pred             EeCCCCCEEEEEECCCCCEEE--EEECCCeEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EcCC---CC-E
Confidence            455655    89999998655  46679999999999999999998        774    4688888 9995   44 8


Q ss_pred             EEEecCCCcEEEEE
Q 024245          224 VLAGYEDGSILVWD  237 (270)
Q Consensus       224 l~~~~~dg~i~vwd  237 (270)
                      |++|+.||+|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-25  Score=168.77  Aligned_cols=222  Identities=14%  Similarity=0.214  Sum_probs=155.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i   88 (270)
                      +.++...+|...|+|++|  +|++||||+.||+|+|||++++++++++.+|.  +.|.+++|++    ++|++++.|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~v~~~~----~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQYDE----RVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEECCS----SEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEeeeeccc----ceeecccccccc
Confidence            345667788899999765  78999999999999999999999999999998  6699998754    799999999999


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCcee--eeccCCCCC--eEecCCCCeEE
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--DTDSLCDSK--DDVPAEGPKYM  164 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~s~~~~~~~  164 (270)
                      ++|++..+....    ........... ..................+|+.......  ...+..|..  ..+.+....++
T Consensus        78 ~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          78 RVWDVNTGEMLN----TLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             EEEESSSCCEEE----EECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             cccccccccccc----ccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            999998876432    22112111111 1112222233444555667777655432  233444544  33444444444


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                        +++.|+.|++||+++++.+..+.        ++.    ..+..+. +++     . ++++++.||.|++||+++ ...
T Consensus       153 --~~s~d~~i~~~d~~~~~~~~~~~--------~~~----~~v~~~~-~~~-----~-~l~~~~~dg~i~i~d~~~-~~~  210 (293)
T d1p22a2         153 --SASGDRTIKVWNTSTCEFVRTLN--------GHK----RGIACLQ-YRD-----R-LVVSGSSDNTIRLWDIEC-GAC  210 (293)
T ss_dssp             --EEETTSEEEEEETTTCCEEEEEE--------CCS----SCEEEEE-EET-----T-EEEEEETTSCEEEEETTT-CCE
T ss_pred             --cccCCCceeeecCCCCcEEEEEc--------ccc----ccccccc-CCC-----C-eEEEecCCCEEEEEeccc-cee
Confidence              34568999999999999998888        452    2344444 543     2 899999999999999998 888


Q ss_pred             eeeeeccCCCeeEEEeecCCCce
Q 024245          245 LTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       245 ~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      +..+.+|...+..+  ++++.+|
T Consensus       211 ~~~~~~~~~~v~~~--~~~~~~l  231 (293)
T d1p22a2         211 LRVLEGHEELVRCI--RFDNKRI  231 (293)
T ss_dssp             EEEECCCSSCEEEE--ECCSSEE
T ss_pred             eeeecccceeeeec--cccceEE
Confidence            88888888877754  4444443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.4e-26  Score=173.43  Aligned_cols=231  Identities=14%  Similarity=0.077  Sum_probs=159.3

Q ss_pred             cEEEEEEeCCCCEEEEecCCC-cEEEEeCCCC--ceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCC
Q 024245           20 SVTDVCFHQTKPILFAGTTGG-ELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg-~i~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   96 (270)
                      .+++++|+|++..|+.++.+. .|+.|+....  ..+..+.+|.. ..|++++|+|..++.+|++|+.||+|++||+..+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~-~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCC-CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            457899999999998876554 3566765443  34556666643 5699999998656789999999999999999876


Q ss_pred             ccCCCCcc----ceecccceEEEEeeccCCccceecC---CCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           97 GLSSNPSL----TIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        97 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      +.......    ....+......+.+...........   ......|+...++.+. .+.+|..    ++|+|+++++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG-EVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE-ECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce-eeeecccccccccccccccceEE
Confidence            54331000    0111222233333333222222222   2234566766665444 4556665    889999987766


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                       +++.|+.|++||.+..+....+.        .+. .....+.+++ |+|+  .+. +|++++.||.|++||+++ ++++
T Consensus       177 -~~~~d~~v~~~d~~~~~~~~~~~--------~~~-~~~~~v~~v~-~~pd--~~~-~l~s~~~d~~i~iwd~~~-~~~~  241 (325)
T d1pgua1         177 -TVGDDGSVVFYQGPPFKFSASDR--------THH-KQGSFVRDVE-FSPD--SGE-FVITVGSDRKISCFDGKS-GEFL  241 (325)
T ss_dssp             -EEETTTEEEEEETTTBEEEEEEC--------SSS-CTTCCEEEEE-ECST--TCC-EEEEEETTCCEEEEETTT-CCEE
T ss_pred             -Eeecccccccccccccccceecc--------ccc-CCCCccEEee-eccc--cce-eccccccccceeeeeecc-cccc
Confidence             46679999999999888776665        221 1345688888 9996  344 899999999999999998 8899


Q ss_pred             eeeeccCCCeeEEEee---cCCCce
Q 024245          246 TAMKVHLEPGLECSMW---RNPITM  267 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~s---~~g~~l  267 (270)
                      ..+.+|..++.++.|+   |||++|
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEE
T ss_pred             ccccccccccccceeeeeccCCCEE
Confidence            9999999888877777   677654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-24  Score=167.71  Aligned_cols=233  Identities=14%  Similarity=0.190  Sum_probs=159.7

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .++++++++|++.|++++|+|+ .+|++|+.|+.|++|+....+.............+....+.+  ++..+++++.|+.
T Consensus        43 ~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~  119 (355)
T d1nexb2          43 KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNT  119 (355)
T ss_dssp             TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSE
T ss_pred             CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCCc
Confidence            4678899999999999999986 489999999999999999988877766555434455566677  8789999999999


Q ss_pred             EEEEEccCCccCCCCcc------c-------------eecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc
Q 024245           88 VKCWDIENGGLSSNPSL------T-------------IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS  148 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (270)
                      |++||+.+.........      .             ...+.......... ...............|++...+.+....
T Consensus       120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~  198 (355)
T d1nexb2         120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILS  198 (355)
T ss_dssp             EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc-cceeeeecccceeeeeecccccceeeee
Confidence            99999987654320000      0             00000001111111 1111223334566778888776655433


Q ss_pred             CCCCC---eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEE
Q 024245          149 LCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (270)
Q Consensus       149 ~~~~~---~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (270)
                      .....   +.++|++..++  +++.|+.|++||++++..+..+.        +|..    .+.++. |+|.      +|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~--------~h~~----~v~~~~-~~~~------~l~  257 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHTA----LVGLLR-LSDK------FLV  257 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTCCEEEEEC--------CCSS----CCCEEE-ECSS------EEE
T ss_pred             ccccccccccccccceeee--cccccceEEeeeccccccccccc--------cccc----cccccc-cccc------eee
Confidence            33333   88999998665  45568999999999999999988        6743    566676 8753      999


Q ss_pred             EecCCCcEEEEEcCCCCcceeeeeccCCCeeEE-EeecCCCcee
Q 024245          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPGLEC-SMWRNPITMS  268 (270)
Q Consensus       226 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~ls  268 (270)
                      +|+.||.|++||+++ ..  ..+..|...+.++ .|++++.+|+
T Consensus       258 ~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~  298 (355)
T d1nexb2         258 SAAADGSIRGWDAND-YS--RKFSYHHTNLSAITTFYVSDNILV  298 (355)
T ss_dssp             EECTTSEEEEEETTT-CC--EEEEEECTTCCCCCEEEECSSEEE
T ss_pred             eeecccccccccccc-cc--eecccccCCceEEEEEcCCCCEEE
Confidence            999999999999987 43  3455566666665 5677877764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-24  Score=170.70  Aligned_cols=239  Identities=16%  Similarity=0.165  Sum_probs=148.9

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce------eEEEeecCCCcceEEEEE---eeCC--CCCEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVAT---GPSI--GLNKV   79 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~---~~~~--~~~~l   79 (270)
                      ....++|.+.|.++++++  ++++||+.|++|+|||....+.      ......+.  ..+..+..   .+..  +..++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc--CCceEeeeEeeeccCCCCCcEE
Confidence            345789999999999875  5899999999999999865431      11222232  22332222   1210  22467


Q ss_pred             EEEeCCCcEEEEEccCCccCCCCcc------ceecccceEEEEeeccCC------ccceecCCCCceEEEeccCce----
Q 024245           80 ISQGRDGTVKCWDIENGGLSSNPSL------TIKTNSYHFCKLSLVKEP------YANAKQANEPKDCYEREVGET----  143 (270)
Q Consensus        80 ~s~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----  143 (270)
                      ++++.||.|++|++...........      ..................      ........+...+|++.....    
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            7999999999999876543221000      000111111112221111      112233345666777643211    


Q ss_pred             -------------eeeccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCce
Q 024245          144 -------------VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (270)
Q Consensus       144 -------------~~~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~  206 (270)
                                   .......+..    ++|+|++  +++ +|+.|++|+|||+.+++++..+....  ...+|    ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~--~l~~h----~~~  233 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIA-TGFNNGTVQISELSTLRPLYNFESQH--SMINN----SNS  233 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEE-EECTTSEEEEEETTTTEEEEEEECCC-----CC----CCC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC--EEE-EEeCCCcEEEEeeccccccccccccc--ccccc----cce
Confidence                         0011111111    8899988  344 78889999999999999887776310  11134    457


Q ss_pred             eeeeeecCCCCCCCceEEEEecCCCc---EEEEEcCCCCcceeee-------------eccCCCeeEEEeecCCCcee
Q 024245          207 CMAVQAYLPSKSQGFVNVLAGYEDGS---ILVWDIRNPGIPLTAM-------------KVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~~~~dg~---i~vwd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~g~~ls  268 (270)
                      +.+++ |+|+   |+ +|++|+.|++   |++||+++ ++++..+             .+|...|++++|+||+++|-
T Consensus       234 V~~l~-~spd---g~-~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         234 IRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             EEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             EEEcc-cccc---cc-eeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence            88998 9995   55 9999998874   99999998 6666655             47999999999999998764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.6e-25  Score=169.00  Aligned_cols=164  Identities=16%  Similarity=0.266  Sum_probs=132.6

Q ss_pred             ccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 024245           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (270)
Q Consensus        11 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~   90 (270)
                      ......+...+....+.+.+.++++|+.|+.|++||+++++++..+.+|.  ..|.+++|+|  ++++|++++.|+.|++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~--~~i~~v~~~p--~~~~l~s~s~d~~i~~  252 (340)
T d1tbga_         177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFP--NGNAFATGSDDATCRL  252 (340)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred             cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC--CCeEEEEECC--CCCEEEEEeCCCeEEE
Confidence            34455677889999999999999999999999999999999999999888  6699999999  9999999999999999


Q ss_pred             EEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCC
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  170 (270)
                      ||+.......  ............                                      .++|+|++++++  +|+.
T Consensus       253 ~~~~~~~~~~--~~~~~~~~~~i~--------------------------------------~~~~s~~~~~l~--~g~~  290 (340)
T d1tbga_         253 FDLRADQELM--TYSHDNIICGIT--------------------------------------SVSFSKSGRLLL--AGYD  290 (340)
T ss_dssp             EETTTTEEEE--EECCTTCCSCEE--------------------------------------EEEECSSSCEEE--EEET
T ss_pred             Eeeccccccc--ccccccccCceE--------------------------------------EEEECCCCCEEE--EEEC
Confidence            9998765322  000011111000                                      056899998654  5667


Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ||.|++||+.+++++.++.        +|.    ..+.+++ |+|+   +. +|++|+.||.|+|||
T Consensus       291 dg~i~iwd~~~~~~~~~~~--------~H~----~~V~~l~-~s~d---~~-~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         291 DFNCNVWDALKADRAGVLA--------GHD----NRVSCLG-VTDD---GM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSCEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EeCC---CC-EEEEEccCCEEEEeC
Confidence            9999999999999999998        774    4688888 9995   44 899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.4e-25  Score=175.24  Aligned_cols=198  Identities=13%  Similarity=0.158  Sum_probs=139.8

Q ss_pred             cccccEEEEEEeCC-----CCEEEEecCCCcEEEEeCCCCc-----------ee----EEEe-ecCCCcceEEEEEeeCC
Q 024245           16 GHRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHR-----------TV----SSSW-VHSAAHGIVSVATGPSI   74 (270)
Q Consensus        16 ~h~~~v~~~~~s~~-----~~~l~s~~~dg~i~vwd~~~~~-----------~~----~~~~-~~~~~~~v~~~~~~~~~   74 (270)
                      .+...+..++|.++     +.++++++.||.+++|++....           ..    .... .......+.+++|+|  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--  194 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--  194 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--
Confidence            35667888888875     3588999999999999985321           00    1111 111124588999999  


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-
Q 024245           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (270)
Q Consensus        75 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (270)
                      + .+|++|+.|++|++||+.+++...    .++...                                    .+.+|.. 
T Consensus       195 d-g~lasgs~Dg~i~iwd~~~~~~~~----~~~~~~------------------------------------~l~~h~~~  233 (393)
T d1sq9a_         195 R-GLIATGFNNGTVQISELSTLRPLY----NFESQH------------------------------------SMINNSNS  233 (393)
T ss_dssp             T-SEEEEECTTSEEEEEETTTTEEEE----EEECCC---------------------------------------CCCCC
T ss_pred             C-CEEEEEeCCCcEEEEeeccccccc----cccccc------------------------------------ccccccce
Confidence            8 489999999999999999875432    111100                                    1122222 


Q ss_pred             ---eEecCCCCeEEEEecCCCc---eEEEEeCCCcceeeeeccCcCC-----CCCCcccCCCceeeeeeecCCCCCCCce
Q 024245          154 ---DDVPAEGPKYMAVAGEQLS---EVEIWDLNTAERCTRLHQNSCG-----GSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (270)
Q Consensus       154 ---~~~s~~~~~~~~~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~-----~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (270)
                         ++|+|+|+.++  +|+.|+   .|++||+++++++..+......     ...+|    ...|++++ |+|+   ++ 
T Consensus       234 V~~l~~spdg~~l~--sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH----~~~V~~l~-fspd---~~-  302 (393)
T d1sq9a_         234 IRSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH----SSWVMSLS-FNDS---GE-  302 (393)
T ss_dssp             EEEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB----SSCEEEEE-ECSS---SS-
T ss_pred             EEEcccccccceee--eecCCCCcceeeecccccceeeeeeccccccccceeeeecc----cCceeeec-cCCC---CC-
Confidence               67999998654  455565   5999999999988887532111     11245    45789998 9995   55 


Q ss_pred             EEEEecCCCcEEEEEcCCCCcceeeeeccCCCee----EEEeecCCCcee
Q 024245          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGL----ECSMWRNPITMS  268 (270)
Q Consensus       223 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~----~~~~s~~g~~ls  268 (270)
                      +|++|+.|++|++||+++ ++++.++++|.+.|.    .++|+|+|..+.
T Consensus       303 ~l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             EEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             eeEEECCCCEEEEEECCC-CCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            999999999999999999 899999999988775    478888886653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-22  Score=152.47  Aligned_cols=224  Identities=13%  Similarity=0.229  Sum_probs=154.3

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                      .++++++++|++.|++++|  ++++|++|+.|+.|++|++..+...........    ....+.+  ....++++..++.
T Consensus        45 ~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~  116 (293)
T d1p22a2          45 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE----AVLHLRF--NNGMMVTCSKDRS  116 (293)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS----CEEEEEC--CTTEEEEEETTSC
T ss_pred             CcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccc----ccccccc--cccceeecccccc
Confidence            4688999999999999987  577999999999999999999887776655442    2333444  4578999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~  165 (270)
                      +.+||..+..... .......+........... .........+....|+....+.+.. +.++..  ..+++++..++ 
T Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~l~-  192 (293)
T d1p22a2         117 IAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRLVV-  192 (293)
T ss_dssp             EEEEECSSSSCCE-EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTEEE-
T ss_pred             eeEeecccccccc-ccccccccccccccceecc-cccccccCCCceeeecCCCCcEEEE-EcccccccccccCCCCeEE-
Confidence            9999998765322 0112222222222222222 1122333455667788887776553 344444  45556666544 


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCC----
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----  241 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~----  241 (270)
                       +++.|+.|++||+++.+.+..+.        +|..    .+..   +.+   ++. +|++|+.||.|++||+...    
T Consensus       193 -~~~~dg~i~i~d~~~~~~~~~~~--------~~~~----~v~~---~~~---~~~-~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         193 -SGSSDNTIRLWDIECGACLRVLE--------GHEE----LVRC---IRF---DNK-RIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEEC--------CCSS----CEEE---EEC---CSS-EEEEEETTSCEEEEEHHHHTSTT
T ss_pred             -EecCCCEEEEEecccceeeeeec--------ccce----eeee---ccc---cce-EEEEEcCCCEEEEEECCCCcccc
Confidence             46679999999999999888887        4532    3333   333   233 8999999999999997541    


Q ss_pred             ----CcceeeeeccCCCeeEEEeecC
Q 024245          242 ----GIPLTAMKVHLEPGLECSMWRN  263 (270)
Q Consensus       242 ----~~~~~~~~~~~~~v~~~~~s~~  263 (270)
                          ..++..+.+|.+.|++++|++.
T Consensus       253 ~~~~~~~~~~~~~H~~~V~~v~~d~~  278 (293)
T d1p22a2         253 APAGTLCLRTLVEHSGRVFRLQFDEF  278 (293)
T ss_dssp             SCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred             ccCCceeeEEecCCCCCEEEEEEcCC
Confidence                2457788999999999999653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-22  Score=153.66  Aligned_cols=206  Identities=17%  Similarity=0.253  Sum_probs=142.8

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeE---------------------------------
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---------------------------------   54 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~---------------------------------   54 (270)
                      .++++++++|.+.|++++|+|+  +|++|+.|+.+++|+........                                 
T Consensus        47 ~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  124 (342)
T d2ovrb2          47 GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  124 (342)
T ss_dssp             CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeec
Confidence            4688999999999999999975  89999999999999876422111                                 


Q ss_pred             -----------------------------------------------EEeecCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 024245           55 -----------------------------------------------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (270)
Q Consensus        55 -----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~   87 (270)
                                                                     .+.+|.    .....+.+  ++.+|++++.||.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~--~~~~l~s~~~dg~  198 (342)
T d2ovrb2         125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQF--DGIHVVSGSLDTS  198 (342)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEE--CSSEEEEEETTSC
T ss_pred             ccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccC--CCCEEEEEeCCCe
Confidence                                                           001111    22334445  6689999999999


Q ss_pred             EEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeecc--CCCCC--eEecCCCCeE
Q 024245           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCDSK--DDVPAEGPKY  163 (270)
Q Consensus        88 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~  163 (270)
                      |++||++.++...    ....+......+++... ........+...+|++...+......  ..|..  .++++++..+
T Consensus       199 i~~~d~~~~~~~~----~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (342)
T d2ovrb2         199 IRVWDVETGNCIH----TLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV  273 (342)
T ss_dssp             EEEEETTTCCEEE----EECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred             EEEeecccceeee----EecccccceeEEecCCC-EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCee
Confidence            9999999886543    45555555555555432 22333445667889988776554332  23333  5666676644


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCc----EEEEEcC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS----ILVWDIR  239 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~----i~vwd~~  239 (270)
                      +  +++.||.|++||++++++++++..       .+.......+++++ |+|+   +. +|++|+.||+    |++||+.
T Consensus       274 ~--s~s~Dg~i~iwd~~tg~~i~~~~~-------~~~~~~~~~v~~v~-~s~~---~~-~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         274 I--TSSDDGTVKLWDLKTGEFIRNLVT-------LESGGSGGVVWRIR-ASNT---KL-VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             E--EEETTSEEEEEETTTCCEEEEEEE-------CTTGGGTCEEEEEE-ECSS---EE-EEEEECSSSSSCCEEEEEECC
T ss_pred             E--EEcCCCEEEEEECCCCCEEEEEec-------ccCCCCCCCEEEEE-ECCC---CC-EEEEEeCCCCCeeEEEEEeCC
Confidence            3  566799999999999999888763       12222356788998 9984   54 9999999985    9999987


Q ss_pred             C
Q 024245          240 N  240 (270)
Q Consensus       240 ~  240 (270)
                      .
T Consensus       340 ~  340 (342)
T d2ovrb2         340 V  340 (342)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.1e-21  Score=148.27  Aligned_cols=230  Identities=10%  Similarity=0.097  Sum_probs=149.3

Q ss_pred             Cccccc-ccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCce---eEEEeecCCCcceEEEEEeeCCCCCEEEEEeC
Q 024245            9 DPVAVL-RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (270)
Q Consensus         9 ~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (270)
                      ++++.+ .+|...|++++|+|++.++ +++.|+.+++|+......   ......+.  ..+.+++|+|  +++.+++++ 
T Consensus        45 ~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~--~g~~~~~~~-  118 (299)
T d1nr0a2          45 ISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLS--SQPLGLAVSA--DGDIAVAAC-  118 (299)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECS--SCEEEEEECT--TSSCEEEEE-
T ss_pred             cEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCcccccccccccccc--cccccccccc--ccccccccc-
Confidence            455556 4799999999999999755 556789999999865421   22223344  5589999999  877766654 


Q ss_pred             CCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccc-eecCCCCceEEEeccCceeeeccCCCCC----eEecCC
Q 024245           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (270)
Q Consensus        85 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  159 (270)
                      ++.+++|+......      ......  ...+.+....... .....+...+|++...+........|..    ++|+|+
T Consensus       119 ~~~i~~~~~~~~~~------~~~~~~--~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         119 YKHIAIYSHGKLTE------VPISYN--SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  190 (299)
T ss_dssp             SSEEEEEETTEEEE------EECSSC--EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             cccccccccccccc------cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            56899998643211      111111  2223332222222 2234556778898877665544445554    899999


Q ss_pred             CCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       160 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      +.+++  +++.|+.|++||+.++........     ..+|    ...+.+++ |+|+   +. +|++|+.||.|++||++
T Consensus       191 ~~~l~--~~~~d~~i~~~~~~~~~~~~~~~~-----~~~h----~~~v~~l~-~s~~---~~-~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         191 GAFLV--ATDQSRKVIPYSVANNFELAHTNS-----WTFH----TAKVACVS-WSPD---NV-RLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SSEEE--EEETTSCEEEEEGGGTTEESCCCC-----CCCC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETT
T ss_pred             ccccc--cccccccccccccccccccccccc-----cccc----cccccccc-cccc---cc-ceEEEcCCCEEEEEECC
Confidence            98655  466689999999988765544331     1144    34678887 9995   44 99999999999999999


Q ss_pred             CCCc-ceeeeecc-CCCeeEEEeecCCCcee
Q 024245          240 NPGI-PLTAMKVH-LEPGLECSMWRNPITMS  268 (270)
Q Consensus       240 ~~~~-~~~~~~~~-~~~v~~~~~s~~g~~ls  268 (270)
                      ++.. +......| ...|..+.|.+++.+++
T Consensus       255 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s  285 (299)
T d1nr0a2         255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVS  285 (299)
T ss_dssp             CTTSCCEEETTSSTTSCEEEEEEEETTEEEE
T ss_pred             CCCcceEEEecCCCCCcEEEEEECCCCEEEE
Confidence            7433 22333333 45677776666655554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=8.1e-22  Score=156.50  Aligned_cols=242  Identities=9%  Similarity=-0.013  Sum_probs=146.8

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEE--e---ecCCCcceEEEEEeeCCCCCEEE-E
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--W---VHSAAHGIVSVATGPSIGLNKVI-S   81 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~~l~-s   81 (270)
                      .+.+.++..|. .+..++|||||++|++++.|+.|++||+.+++.....  .   +|.  ..+.+++|+|  +|++++ +
T Consensus        52 ~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~--~~~~s~~~sp--DG~~l~v~  126 (426)
T d1hzua2          52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR--SVESSKFKGY--EDRYTIAG  126 (426)
T ss_dssp             CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE--EEEECCSTTC--TTTEEEEE
T ss_pred             CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc--ceEEeeeecC--CCCEEEEe
Confidence            36777888774 6999999999999999999999999999988754433  2   233  4466778888  999875 5


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecccc---------eEEEEeeccCCccceecCCCCce--EEEeccCceeeeccCC
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSY---------HFCKLSLVKEPYANAKQANEPKD--CYEREVGETVDTDSLC  150 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  150 (270)
                      +..++.+++||..++....  .........         ....+..................  .++.............
T Consensus       127 ~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         127 AYWPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             EEESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE
T ss_pred             ecCCCeEEEEcCCccceeE--EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec
Confidence            5589999999999886543  111111000         00111111111111111111112  2222222221111111


Q ss_pred             CCC----eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCC-------------------------------
Q 024245          151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG-------------------------------  195 (270)
Q Consensus       151 ~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------------------------  195 (270)
                      +..    +.|+|++++++++ ...+..+.+++..+++.+..+.......                               
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~  283 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTA-ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  283 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEE-ETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred             cCCccEeeeECCCCcEEEee-eecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeec
Confidence            222    8899999887764 4557888999988777655443210000                               


Q ss_pred             ---------------CCCcccCCCceeeeeeecCCCCCCCceEEE-------EecCCCcEEEEEcCCCCcceeee-----
Q 024245          196 ---------------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-------AGYEDGSILVWDIRNPGIPLTAM-----  248 (270)
Q Consensus       196 ---------------~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-------~~~~dg~i~vwd~~~~~~~~~~~-----  248 (270)
                                     ..+|    ...+..++ |+|+   ++ +|+       +++.|++|+|||+++ +++..++     
T Consensus       284 ~~~~~~~~~~~~~~~l~g~----~~~v~~v~-~sPd---g~-~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~  353 (426)
T d1hzua2         284 DPKNHPQYAWKKVAELQGQ----GGGSLFIK-THPK---SS-HLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAE  353 (426)
T ss_dssp             CTTTCTTTBTSEEEEEECS----SSCCCCEE-CCTT---CS-EEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHH
T ss_pred             cccccccccceEeEEEecC----CCceeEEE-cCCC---Cc-eEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccch
Confidence                           0011    22456676 9995   55 777       456789999999998 5544443     


Q ss_pred             ----eccCCCeeEEEeecCCCce
Q 024245          249 ----KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       249 ----~~~~~~v~~~~~s~~g~~l  267 (270)
                          ..|...|.+++|||||++|
T Consensus       354 ~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         354 WADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             HHCCCSSCCCEEEEEECSSSSEE
T ss_pred             hcccCCCCccEEEEEECCCCCEE
Confidence                2345679999999999865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.1e-20  Score=146.10  Aligned_cols=182  Identities=13%  Similarity=-0.040  Sum_probs=132.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecc
Q 024245           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (270)
Q Consensus        30 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  109 (270)
                      .-++++.+.||.|.|||..+++.+..+..+   ..+..++|+|  ||+++++++.|++|++||+.+++...  ...++..
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g---~~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i~~~  104 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKIG  104 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS---SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEEECC
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCC---CCeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceE--EEEEecC
Confidence            335689999999999999999999999876   3489999999  99999999999999999998876422  2222221


Q ss_pred             cceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      ..... +...                                  ..|+|||+++++ +++.+++|+|||..+++++..+.
T Consensus       105 ~~~~~-~~~s----------------------------------~~~SpDG~~l~v-s~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         105 SEARS-IETS----------------------------------KMEGWEDKYAIA-GAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             SEEEE-EEEC----------------------------------CSTTCTTTEEEE-EEEETTEEEEEETTTCCEEEEEE
T ss_pred             CCCCC-eEEe----------------------------------cccCCCCCEEEE-EcCCCCeEEEEeCccccceeeec
Confidence            11111 1100                                  248899998776 56668999999999999888876


Q ss_pred             cCcCCCCCCcccC-------CCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-ccCCCeeEEEee
Q 024245          190 QNSCGGSPNFSSK-------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPGLECSMW  261 (270)
Q Consensus       190 ~~~~~~~~~h~~~-------~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~s  261 (270)
                              .|...       .......+. ++|+   |..++++...++.|.+||..+ .+...... .+...+..++|+
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~v~-~s~d---g~~~~vs~~~~~~i~~~d~~~-~~~~~~~~i~~g~~~~~~~~s  215 (432)
T d1qksa2         149 --------TRGMTYDEQEYHPEPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERFLHDGGLD  215 (432)
T ss_dssp             --------CCEECTTTCCEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTC-SSEEEEEEEECCSSEEEEEEC
T ss_pred             --------cCCccccceeccCCCceeEEE-ECCC---CCEEEEEEccCCeEEEEEccC-CCcceEEEEcccCccccceEC
Confidence                    23211       122334555 8874   554778888999999999987 44333222 345678999999


Q ss_pred             cCCCce
Q 024245          262 RNPITM  267 (270)
Q Consensus       262 ~~g~~l  267 (270)
                      |||+++
T Consensus       216 pdg~~~  221 (432)
T d1qksa2         216 GSHRYF  221 (432)
T ss_dssp             TTSCEE
T ss_pred             CCCCEE
Confidence            999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=2e-20  Score=144.51  Aligned_cols=175  Identities=13%  Similarity=0.079  Sum_probs=128.6

Q ss_pred             EEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEccCCccC
Q 024245           23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLS   99 (270)
Q Consensus        23 ~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~   99 (270)
                      .-.||| ||+++|+++. |.|++||++.+..++.  .|.  ..|.+++|+|  +|++|++++.+.  .|++||+++++..
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~--~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEP--LRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCC--SCEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCC--CCEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            467999 9999999875 7899999998877654  466  6699999999  999998776553  7999999987542


Q ss_pred             CCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeC
Q 024245          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (270)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~  179 (270)
                      .     +..+......                                      ++|+|+|++++.  ++.++.+++|++
T Consensus        80 ~-----~~~~~~~v~~--------------------------------------~~~spdg~~l~~--~~~~~~~~~~~~  114 (360)
T d1k32a3          80 K-----FEENLGNVFA--------------------------------------MGVDRNGKFAVV--ANDRFEIMTVDL  114 (360)
T ss_dssp             E-----CCCCCCSEEE--------------------------------------EEECTTSSEEEE--EETTSEEEEEET
T ss_pred             E-----eeCCCceEEe--------------------------------------eeecccccccce--eccccccccccc
Confidence            2     1111111110                                      569999987664  456899999999


Q ss_pred             CCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEE----------ecCCCcEEEEEcCCCCcceeeee
Q 024245          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA----------GYEDGSILVWDIRNPGIPLTAMK  249 (270)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~----------~~~dg~i~vwd~~~~~~~~~~~~  249 (270)
                      .+++....+.        .|    ...+.+++ |+|+   |+ +|+.          +..++.+++||+.+ ++... +.
T Consensus       115 ~~~~~~~~~~--------~~----~~~~~~~~-~spd---g~-~la~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~-~~  175 (360)
T d1k32a3         115 ETGKPTVIER--------SR----EAMITDFT-ISDN---SR-FIAYGFPLKHGETDGYVMQAIHVYDMEG-RKIFA-AT  175 (360)
T ss_dssp             TTCCEEEEEE--------CS----SSCCCCEE-ECTT---SC-EEEEEEEECSSTTCSCCEEEEEEEETTT-TEEEE-CS
T ss_pred             cccceeeeee--------cc----cccccchh-hccc---ee-eeeeeccccccceeeccccceeeecccc-Cceee-ec
Confidence            9998887777        34    23455676 9994   55 6664          34556799999997 55444 44


Q ss_pred             ccCCCeeEEEeecCCCcee
Q 024245          250 VHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       250 ~~~~~v~~~~~s~~g~~ls  268 (270)
                      .+...+..++|+|||++|.
T Consensus       176 ~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         176 TENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             CSSSBEEEEEECTTSCEEE
T ss_pred             ccccccccccccCCCCEEE
Confidence            4677889999999998763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=5.5e-20  Score=142.06  Aligned_cols=187  Identities=8%  Similarity=-0.048  Sum_probs=133.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecCCC--cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 024245           16 GHRASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~   93 (270)
                      +|...|.+++|+|||++|++++.+.  .|++||+++++.. .+..|.  ..|.+++|+|  ++++|++++.++.+++|++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~--~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL--GNVFAMGVDR--NGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC--CSEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC--ceEEeeeecc--cccccceeccccccccccc
Confidence            6999999999999999988766553  7999999987665 455566  6699999999  9999999999999999999


Q ss_pred             cCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEE-------
Q 024245           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV-------  166 (270)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------  166 (270)
                      .+++...    .+..+....                                      ..++|+|+|++++.+       
T Consensus       115 ~~~~~~~----~~~~~~~~~--------------------------------------~~~~~spdg~~la~~~~~~~~~  152 (360)
T d1k32a3         115 ETGKPTV----IERSREAMI--------------------------------------TDFTISDNSRFIAYGFPLKHGE  152 (360)
T ss_dssp             TTCCEEE----EEECSSSCC--------------------------------------CCEEECTTSCEEEEEEEECSST
T ss_pred             cccceee----eeecccccc--------------------------------------cchhhccceeeeeeeccccccc
Confidence            8875422    111111110                                      116699999877643       


Q ss_pred             -ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC---
Q 024245          167 -AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---  242 (270)
Q Consensus       167 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~---  242 (270)
                       .+..++.+++||+.+++......         +    ......+. |+|+   |+ +|++++.|+.+.+||.....   
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~~~~---------~----~~~~~~~~-~spd---g~-~l~~~s~~~~~~~~d~~~~~~~~  214 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFAATT---------E----NSHDYAPA-FDAD---SK-NLYYLSYRSLDPSPDRVVLNFSF  214 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEECSC---------S----SSBEEEEE-ECTT---SC-EEEEEESCCCCCEECSSSSCEEC
T ss_pred             eeeccccceeeeccccCceeeecc---------c----cccccccc-ccCC---CC-EEEEEeCCCceEcccccccceee
Confidence             24456789999999877655444         2    23455566 9994   55 89999999999999976521   


Q ss_pred             ---cceeeeeccCCCeeEEEeecCCCce
Q 024245          243 ---IPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 ---~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                         .....+..+...+..+.|++++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~  242 (360)
T d1k32a3         215 EVVSKPFVIPLIPGSPNPTKLVPRSMTS  242 (360)
T ss_dssp             CSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred             ccccceEEEecccCccccceECCCcCcc
Confidence               1233344455566666777766543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=3.2e-18  Score=128.81  Aligned_cols=229  Identities=13%  Similarity=0.073  Sum_probs=153.7

Q ss_pred             CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~   86 (270)
                      +.++++.. ...+..++|+|||++| ++++.++.|++||+.+++.+..+..+.   .+..+.|++  ++..++ ++..++
T Consensus        23 ~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~   96 (301)
T d1l0qa2          23 KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSP--DGKQVYVTNMASS   96 (301)
T ss_dssp             EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEETTTT
T ss_pred             eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc---ccccccccc--ccccccccccccc
Confidence            45555553 3567899999999977 567789999999999999999888764   378999999  877655 566778


Q ss_pred             cEEEEEccCCccCCCCccceecccce-EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeE
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKY  163 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  163 (270)
                      .+.+|+..+++...    .+...... ...++..................++..+.............  ++++|++..+
T Consensus        97 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (301)
T d1l0qa2          97 TLSVIDTTSNTVAG----TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV  172 (301)
T ss_dssp             EEEEEETTTTEEEE----EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred             eeeecccccceeee----eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccce
Confidence            99999999876533    33322221 12222222222222222334455666666555443322222  8899999887


Q ss_pred             EEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe--cCCCcEEEEEcCCC
Q 024245          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILVWDIRNP  241 (270)
Q Consensus       164 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~--~~dg~i~vwd~~~~  241 (270)
                      +++ +..++.+.+|+....+....+..             ......+. |+++   +...++++  ..++.|++||+.+ 
T Consensus       173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~~~~v~~~~~~~~~v~v~D~~t-  233 (301)
T d1l0qa2         173 YVA-NFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GTKAYVTNVDKYFNTVSMIDTGT-  233 (301)
T ss_dssp             EEE-ETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SSEEEEEEECSSCCEEEEEETTT-
T ss_pred             eee-cccccccccccccceeeeecccc-------------cCCcceee-cccc---ccccccccccceeeeeeeeecCC-
Confidence            764 44578889999888777776662             22445566 8885   33233332  3457899999998 


Q ss_pred             CcceeeeeccCCCeeEEEeecCCCce
Q 024245          242 GIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ++.+..+.. ...+.+++|+|||++|
T Consensus       234 ~~~~~~~~~-~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         234 NKITARIPV-GPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             TEEEEEEEC-CSSEEEEEECTTSSEE
T ss_pred             CeEEEEEcC-CCCEEEEEEeCCCCEE
Confidence            787777775 4568999999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.3e-19  Score=134.63  Aligned_cols=160  Identities=9%  Similarity=0.132  Sum_probs=106.4

Q ss_pred             EEEeCCCCEEEEecCCC-cEEEEeCCCCceeEEEee-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCC
Q 024245           24 VCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  101 (270)
                      .++++++..+++++.|+ .+++|++...+....+.. +.  ..|.+++|+|  ++.+|++++.||.|++||+.++.... 
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~-  198 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR--AKPSYISISP--SETYIAAGDVMGKILLYDLQSREVKT-  198 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS--SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccC--CceeEEEecc--Cccccccccccccccceeeccccccc-
Confidence            45667777777777664 799999876655554443 33  6699999999  99999999999999999998875422 


Q ss_pred             CccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCC
Q 024245          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~  181 (270)
                        .....+......+.+..  ....                          ...+.+++.+ ++ +|+.|++|+|||+++
T Consensus       199 --~~~~~h~~~v~~~~~~p--~~~~--------------------------~~~~~~~~~~-l~-sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         199 --SRWAFRTSKINAISWKP--AEKG--------------------------ANEEEIEEDL-VA-TGSLDTNIFIYSVKR  246 (287)
T ss_dssp             --CCSCCCSSCEEEEEECC--CC--------------------------------CCSCCE-EE-EEETTSCEEEEESSC
T ss_pred             --ccccccccccceeeecc--cccc--------------------------cccccCCCCe-eE-eecCCCeEEEEECCC
Confidence              11122222222222111  0000                          0223445543 33 677899999999987


Q ss_pred             cc-eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEc
Q 024245          182 AE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (270)
Q Consensus       182 ~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~  238 (270)
                      +. .+..+.        +|.    ..+.++. |+|+   +  .|++++.||.|++||+
T Consensus       247 ~~~~~~~~~--------~h~----~~V~~v~-~~~~---~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PMKIIKALN--------AHK----DGVNNLL-WETP---S--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCCEEETT--------SST----TCEEEEE-EEET---T--EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEeC--------CCC----CCeEEEE-ECCC---C--EEEEEECCCeEEEEEE
Confidence            44 555555        674    4678887 9974   3  6899999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=5.1e-18  Score=134.42  Aligned_cols=181  Identities=11%  Similarity=-0.053  Sum_probs=126.8

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceeccc
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  110 (270)
                      .++++++.||.|+|||+.+++.+.++..+   ..+..++|+|  ||++|++++.|++|++||+.+++...  ...++...
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g---~~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~~  105 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG---YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGI  105 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC---SSEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC---CCeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCCC
Confidence            36688999999999999999999999876   3489999999  99999999999999999999886432  12222211


Q ss_pred             ce-EEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeec
Q 024245          111 YH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       111 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .. ...++                                    .+|+|||+++++ ++..++.+++||..+++++..+.
T Consensus       106 ~~~~~~~s------------------------------------~~~spDG~~l~v-~~~~~~~v~i~d~~~~~~~~~~~  148 (426)
T d1hzua2         106 EARSVESS------------------------------------KFKGYEDRYTIA-GAYWPPQFAIMDGETLEPKQIVS  148 (426)
T ss_dssp             EEEEEEEC------------------------------------CSTTCTTTEEEE-EEEESSEEEEEETTTCCEEEEEE
T ss_pred             CCcceEEe------------------------------------eeecCCCCEEEE-eecCCCeEEEEcCCccceeEEee
Confidence            11 11111                                    348899998776 45568999999999999888776


Q ss_pred             cCcCCCCCCcccCC-------CceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeec
Q 024245          190 QNSCGGSPNFSSKG-------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       190 ~~~~~~~~~h~~~~-------~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~  262 (270)
                              +|....       .+....+. +++   ++..++++....+.+.+++.............+...+..++|+|
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~i~-~s~---d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         149 --------TRGMTVDTQTYHPEPRVAAII-ASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             --------CCEECSSSCCEESCCCEEEEE-ECS---SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             --------ccCCCccceeecCCCceeEEE-ECC---CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence                    332211       11222333 555   33335555555667777777663334444456778899999999


Q ss_pred             CCCce
Q 024245          263 NPITM  267 (270)
Q Consensus       263 ~g~~l  267 (270)
                      +|+++
T Consensus       217 ~g~~~  221 (426)
T d1hzua2         217 SHRYF  221 (426)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=3.9e-18  Score=130.27  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccCC
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      +++++++.|++|.|||+++++.+..+..+.....+.+++|+|  +|+++ ++++.++.|.+||+.+++...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            489999999999999999999999987654335578999999  99987 467789999999999887543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4.1e-18  Score=129.87  Aligned_cols=216  Identities=8%  Similarity=-0.004  Sum_probs=116.6

Q ss_pred             ccccccccEEEEEEeCC-CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEE-----------------------
Q 024245           13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV-----------------------   68 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-----------------------   68 (270)
                      ...+|.++|++++|+|+ +.+|++|+.||.|++|++...........+.. ......                       
T Consensus        51 ~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA-NLGICRICKYGDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC-CSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred             EecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccc-ccccccccccccccccccccccccceeec
Confidence            34479999999999986 55899999999999999987654443332221 112222                       


Q ss_pred             -------------------------EEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccC--
Q 024245           69 -------------------------ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--  121 (270)
Q Consensus        69 -------------------------~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  121 (270)
                                               .+.+  .++.+++++.|+.|++||+........... ................  
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGG
T ss_pred             cccccceeeecccccccccceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeee-ecccccceeeeEeecCCC
Confidence                                     2333  334555555555555555544432210000 0000111111111110  


Q ss_pred             CccceecCCCCceEEEeccCceee--------------eccCCCCC----eEecCCCCeEEEEecCCCceEEEEeCCCcc
Q 024245          122 PYANAKQANEPKDCYEREVGETVD--------------TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (270)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~----~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~  183 (270)
                      .........+...+|+........              ....+|..    ++|+|++++++  +|+.||.|++||+++++
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la--sg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY--TAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE--EEETTSCEEEEETTTTE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE--EECCCCEEEEEECCCCc
Confidence            011111222333444433221110              01122222    79999998653  67779999999999999


Q ss_pred             eeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeE
Q 024245          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLE  257 (270)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~  257 (270)
                      .+.++..       .|    ...+  ++ |+|+   +. +|++++.|+.+++|....     ..+..|...|..
T Consensus       285 ~l~~~~~-------~~----~~~~--~~-~s~~---~~-~l~~a~sdd~~~~~~~~~-----~~~~~~~~~i~~  335 (342)
T d1yfqa_         285 KIKNFAK-------FN----EDSV--VK-IACS---DN-ILCLATSDDTFKTNAAID-----QTIELNASSIYI  335 (342)
T ss_dssp             EEEECCC-------CS----SSEE--EE-EEEC---SS-EEEEEEECTHHHHCSSSC-----TTSCCCCCEEEE
T ss_pred             EEEEecC-------CC----CCEE--EE-EEeC---CC-EEEEEEcCCcEEEeeeeC-----CCccCCCCeEEE
Confidence            9888862       22    2233  33 6664   44 888888898888886543     123445555553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.6e-17  Score=130.36  Aligned_cols=173  Identities=10%  Similarity=-0.057  Sum_probs=112.1

Q ss_pred             CCcccccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCcee--EEEe---ecCCCcceEEEEEeeCCCCCEE-EE
Q 024245            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSW---VHSAAHGIVSVATGPSIGLNKV-IS   81 (270)
Q Consensus         8 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~---~~~~~~~v~~~~~~~~~~~~~l-~s   81 (270)
                      .+++..+..| ..+..++|||||+++++++.|+.|++||+.+++..  ..+.   .+.  ..+.+..|+|  ||++| ++
T Consensus        52 ~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~--~~~~s~~~Sp--DG~~l~vs  126 (432)
T d1qksa2          52 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIETSKMEGW--EDKYAIAG  126 (432)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEECCSTTC--TTTEEEEE
T ss_pred             CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC--CeEEecccCC--CCCEEEEE
Confidence            4677788776 46999999999999999999999999999877543  3333   232  4466667788  99976 67


Q ss_pred             EeCCCcEEEEEccCCccCCCCccceecc-----------cceE--EEEeeccCCccceecCCCCceEEEeccCceeee-c
Q 024245           82 QGRDGTVKCWDIENGGLSSNPSLTIKTN-----------SYHF--CKLSLVKEPYANAKQANEPKDCYEREVGETVDT-D  147 (270)
Q Consensus        82 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  147 (270)
                      ++.+++|++||..+++...    .+...           ....  ..++.............+....++..+.+.... .
T Consensus       127 ~~~~~~v~i~d~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~  202 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKK----IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE  202 (432)
T ss_dssp             EEETTEEEEEETTTCCEEE----EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             cCCCCeEEEEeCcccccee----eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence            8889999999999887543    11111           0001  111111111112222333445566655543322 1


Q ss_pred             -cCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeecc
Q 024245          148 -SLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       148 -~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                       ..+...  ++|+|+|+++++++ ..++.+.++|..+++.+..+..
T Consensus       203 i~~g~~~~~~~~spdg~~~~va~-~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTTTEEEEEEEC
T ss_pred             EcccCccccceECCCCCEEEEec-cccceEEEeecccceEEEEecc
Confidence             122222  89999999888754 4578999999999888777653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=1e-17  Score=128.34  Aligned_cols=73  Identities=10%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEccCCccC
Q 024245           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~   99 (270)
                      ++|++++++|++++.|++|.+||+.+++.++++..... ..+.+++|+|  ||+++ ++++.++.|.+||+.+++..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeee
Confidence            57899999999999999999999999999998875322 4578999999  99887 46668899999999887543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.77  E-value=4.2e-16  Score=116.98  Aligned_cols=212  Identities=14%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             CcccccccccccEEEEEEeCCCCEE-EEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~   86 (270)
                      +.++++..|. .+..++|++++..+ +++..++.+.+|+..+++....+..+   ..+.++.|+|  ++..++ ++..++
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--dg~~~~~~~~~~~  138 (301)
T d1l0qa2          65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSP--DGKKLYVTNNGDK  138 (301)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEETTTT
T ss_pred             ceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccc---ccceEEEeec--CCCeeeeeecccc
Confidence            4566666664 46899999998854 55677889999999999888888766   4478999999  888765 666788


Q ss_pred             cEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC---eEecCCCC
Q 024245           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK---DDVPAEGP  161 (270)
Q Consensus        87 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~  161 (270)
                      .+.+|+..+.+...    .+..... ...+..............  .....+.....+... ....+..   +++++++.
T Consensus       139 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  212 (301)
T d1l0qa2         139 TVSVINTVTKAVIN----TVSVGRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVKVEAAPSGIAVNPEGT  212 (301)
T ss_dssp             EEEEEETTTTEEEE----EEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSEEEEEEECTTSS
T ss_pred             ceeeeeccccceee----ecccCCC-ceEEEeeccccceeeecccccccccccccceeeee-cccccCCcceeecccccc
Confidence            99999998876543    2222221 122222222222222221  222223333333222 2222222   88999999


Q ss_pred             eEEEEe-cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          162 KYMAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       162 ~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      .++++. +..++.|++||+.+++.+..+..        +     ..+..++ |+|+   |+.++++++.|+.|++||+.+
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--------~-----~~~~~va-~spd---g~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTNKITARIPV--------G-----PDPAGIA-VTPD---GKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEEEEC--------C-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccceeeeeeeeecCCCeEEEEEcC--------C-----CCEEEEE-EeCC---CCEEEEEECCCCeEEEEECCC
Confidence            887643 33467899999999998888872        2     2456787 9994   653557888999999999999


Q ss_pred             CCcceeeeec
Q 024245          241 PGIPLTAMKV  250 (270)
Q Consensus       241 ~~~~~~~~~~  250 (270)
                       ++.+.++..
T Consensus       276 -~~~~~~~~v  284 (301)
T d1l0qa2         276 -NTITATMAV  284 (301)
T ss_dssp             -TEEEEEEEC
T ss_pred             -CeEEEEEeC
Confidence             788877763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.4e-15  Score=117.90  Aligned_cols=234  Identities=7%  Similarity=-0.071  Sum_probs=135.6

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEec----------CCCcEEEEeCCCCceeEEEeecCCC----------------
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA----------------   62 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~----------------   62 (270)
                      +.+.++.++...  .++|+|||++|++++          .++.|.+||..+++.+..+..+...                
T Consensus        58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            455555555433  799999999998874          4678999999988766544322100                


Q ss_pred             -----------------------------cceEEEEEeeCCCCCE-EEEEeCCCcEEEEEccCCccCCCCcccee--ccc
Q 024245           63 -----------------------------HGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSNPSLTIK--TNS  110 (270)
Q Consensus        63 -----------------------------~~v~~~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~~  110 (270)
                                                   ....++.++|  +++. +++.+.|+.+.+|+...++..........  ...
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP--GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQN  213 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec--CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCcc
Confidence                                         1123455556  5443 35667777777787766554320000000  000


Q ss_pred             ceEEEEeeccCCccceecCCCCceEEEeccCceee-------------ecc-CCCCC-eEecCCCCeEEEE--------e
Q 024245          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------------TDS-LCDSK-DDVPAEGPKYMAV--------A  167 (270)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~-~~~s~~~~~~~~~--------~  167 (270)
                      ...................+.....++........             ... ..... +++++++..++..        .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  293 (373)
T d2madh_         214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             ceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEe
Confidence            11111111111111112222223333333322110             000 01111 5666666654422        2


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCce-EEEEecCCCcEEEEEcCCCCccee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-NVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~-~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      ...++.+.+||..+++.+..+..             ...+..++ |+|+   |+. ++++++.|+.|++||+.+ ++.+.
T Consensus       294 ~~~~~~v~~~d~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~l~vt~~~d~~v~v~D~~t-g~~~~  355 (373)
T d2madh_         294 HAAAKEVTSVTGLVGQTSSQISL-------------GHDVDAIS-VAQD---GGPDLYALSAGTEVLHIYDAGA-GDQDQ  355 (373)
T ss_pred             ecCCCeEEEEECCCCcEEEEecC-------------CCCeeEEE-ECCC---CCEEEEEEeCCCCeEEEEECCC-CCEEE
Confidence            34467899999999999888873             23466777 9994   542 457899999999999999 89999


Q ss_pred             eeeccCCCeeEEEeecCC
Q 024245          247 AMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s~~g  264 (270)
                      .+..+....+.|++.+++
T Consensus       356 ~~~~~g~~P~~l~~~~~~  373 (373)
T d2madh_         356 STVELGSGPQVLSVMNEA  373 (373)
T ss_pred             EECCCCCCCcEEEEecCC
Confidence            999888888988887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.5e-16  Score=119.24  Aligned_cols=237  Identities=11%  Similarity=0.035  Sum_probs=136.4

Q ss_pred             cccccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecC-CCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEE
Q 024245           16 GHRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD   92 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd   92 (270)
                      .|.+.|..|+|+|||++|++ +..|+.|++|++........+..+. ....+..++|+|  +|++|++++. ++.+.+|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC--CCCEEeecccCCCceeeec
Confidence            57889999999999998854 5568999999997654333332211 114477899999  9999988875 67899998


Q ss_pred             ccCCccCCCCccceecccc--eEEEEeeccCCccceecCCCCceEEEeccCceee-------eccCCCCC--eEecCCCC
Q 024245           93 IENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------TDSLCDSK--DDVPAEGP  161 (270)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~s~~~~  161 (270)
                      ........  .........  ....++..................++........       ....+...  ++|++++.
T Consensus       112 ~~~~~~~~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         112 LEDGLPVG--VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EETTEEEE--EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ccccccee--cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            87664322  111111111  1111222222112222222333445544332111       11122222  89999998


Q ss_pred             eEEEEecCCCceEEEEeCCCcce----eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          162 KYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       162 ~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      .++. +....+...+|+......    ...+...      ............+. ++|   +++.+++++..++.+.+|+
T Consensus       190 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~s~---d~~~~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         190 YAYC-VNELNSSVDVWELKDPHGNIECVQTLDMM------PENFSDTRWAADIH-ITP---DGRHLYACDRTASLITVFS  258 (333)
T ss_dssp             EEEE-EETTTTEEEEEESSCTTSCCEEEEEEECS------CTTCCSCCCEEEEE-ECT---TSSEEEEEETTTTEEEEEE
T ss_pred             eEEe-eccccCceEEEeecccccceeeeeeeeee------ecCCCccccceeEE-Eec---ccCceeeecccCCeEEEEE
Confidence            7765 455567888888654331    1122100      00011122344555 887   4555777778889999999


Q ss_pred             cCCCCcceeee--eccCCCeeEEEeecCCCce
Q 024245          238 IRNPGIPLTAM--KVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       238 ~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l  267 (270)
                      +...+......  ......+.+++|+|||++|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l  290 (333)
T d1ri6a_         259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL  290 (333)
T ss_dssp             ECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred             EcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEE
Confidence            98743332222  2234568899999999975

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.3e-15  Score=117.17  Aligned_cols=229  Identities=8%  Similarity=-0.023  Sum_probs=141.6

Q ss_pred             cccccccccccEEEEEEeCCCCEEEEe----------cCCCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeCC
Q 024245           10 PVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSI   74 (270)
Q Consensus        10 ~~~~~~~h~~~v~~~~~s~~~~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~   74 (270)
                      ++.++..+..  ..++|+|||++|+++          ..|+.|++||+.+++.+..+..+...     .....++|+|  
T Consensus        40 ~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~--  115 (355)
T d2bbkh_          40 VIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--  115 (355)
T ss_dssp             EEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--
T ss_pred             EEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec--
Confidence            3444443333  368999999988764          34789999999999988877654321     2245689999  


Q ss_pred             CCCEEEEEe--CCCcEEEEEccCCccCCCCccceeccc---------ceEEEEeeccC----------------------
Q 024245           75 GLNKVISQG--RDGTVKCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKE----------------------  121 (270)
Q Consensus        75 ~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----------------------  121 (270)
                      ++++++.++  .+..+.+|+..+++...    .+....         .....++....                      
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~  191 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKR----MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP  191 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEE----EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEee----EEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc
Confidence            988877654  46789999998876433    111100         00000000000                      


Q ss_pred             -------------Cc--cceecCCCCceEEEeccCceeee-cc--------------CCCCCeEecCCCCeEEEEecC--
Q 024245          122 -------------PY--ANAKQANEPKDCYEREVGETVDT-DS--------------LCDSKDDVPAEGPKYMAVAGE--  169 (270)
Q Consensus       122 -------------~~--~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~s~~~~~~~~~~~~--  169 (270)
                                   ..  ......++....|+...+..... ..              .+...+++++++..+++....  
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~  271 (355)
T d2bbkh_         192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  271 (355)
T ss_dssp             TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCC
Confidence                         00  00111122223344443322111 11              111127888999877764321  


Q ss_pred             ------CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCCC
Q 024245          170 ------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       170 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~~  242 (270)
                            ....|.+||..+++.+.++..             ...+.+++ |+|+   |+ .++++++.|+.|++||+++ +
T Consensus       272 ~~~~~~~~~~v~v~d~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~l~v~~~~d~~i~v~D~~t-g  333 (355)
T d2bbkh_         272 EWRHKTASRFVVVLDAKTGERLAKFEM-------------GHEIDSIN-VSQD---EKPLLYALSTGDKTLYIHDAES-G  333 (355)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEETTT-C
T ss_pred             ceeecCCCCeEEEEeCCCCcEEEEecC-------------CCCEEEEE-EcCC---CCeEEEEEECCCCEEEEEECCC-C
Confidence                  125799999999998888872             23467787 9995   54 3567888899999999999 8


Q ss_pred             cceeeeeccCCCeeEEEeecCC
Q 024245          243 IPLTAMKVHLEPGLECSMWRNP  264 (270)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~s~~g  264 (270)
                      +.+.++.++......+.+.++|
T Consensus       334 ~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         334 EELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             CEEEEECCCCSSCCEEECCCCC
T ss_pred             CEEEEEeCcCCCccEEEeCCCC
Confidence            8899998877777777777665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.2e-14  Score=108.11  Aligned_cols=178  Identities=9%  Similarity=0.075  Sum_probs=112.2

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEe--ecCCCcceEEEEEeeCCCCCEEEEE-eCCCcEEEEEccCCccCCCCccceec
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKT  108 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~  108 (270)
                      .+++++.|++|++|++.....+..+.  .+.  ..+..|+|+|  ||++|+++ ..|+.|++|++.......    ....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~----~~~~   77 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGAL----TFAA   77 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCE----EEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCC--CCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcE----EEee
Confidence            46788899999999997654433333  344  5699999999  99988654 558999999998664321    1100


Q ss_pred             ccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeee
Q 024245          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (270)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  188 (270)
                      .      ......                             ...++|+|||+++++ ++..++.|.+|+..........
T Consensus        78 ~------~~~~~~-----------------------------p~~l~~spDg~~l~v-~~~~~~~v~~~~~~~~~~~~~~  121 (333)
T d1ri6a_          78 E------SALPGS-----------------------------LTHISTDHQGQFVFV-GSYNAGNVSVTRLEDGLPVGVV  121 (333)
T ss_dssp             E------EECSSC-----------------------------CSEEEECTTSSEEEE-EETTTTEEEEEEEETTEEEEEE
T ss_pred             e------cccCCC-----------------------------ceEEEEcCCCCEEee-cccCCCceeeeccccccceecc
Confidence            0      000000                             001679999998776 4555789999998766644443


Q ss_pred             ccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeee-----eccCCCeeEEEeecC
Q 024245          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPGLECSMWRN  263 (270)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~s~~  263 (270)
                      ...      .+    ...+.++. ++|+   ++..+++...+..|.+|+...........     ......+..++|+++
T Consensus       122 ~~~------~~----~~~~~~v~-~s~d---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         122 DVV------EG----LDGCHSAN-ISPD---NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEE------CC----CTTBCCCE-ECTT---SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             ccc------CC----CccceEEE-eeec---ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            310      11    22345566 8984   55355555566789999988733322211     123345678999998


Q ss_pred             CCce
Q 024245          264 PITM  267 (270)
Q Consensus       264 g~~l  267 (270)
                      +.++
T Consensus       188 ~~~~  191 (333)
T d1ri6a_         188 EQYA  191 (333)
T ss_dssp             SSEE
T ss_pred             ceeE
Confidence            8764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=8.6e-14  Score=107.59  Aligned_cols=174  Identities=7%  Similarity=-0.077  Sum_probs=121.9

Q ss_pred             ccccccccEEEEEEeCCCCEEEEe-----cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe----
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----   83 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----   83 (270)
                      -...+..++..++++|||+.++..     +.++.|.+||..+++.+..+..+.    ...++|+|  ||++|++++    
T Consensus        15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~Sp--DG~~l~va~~~~~   88 (373)
T d2madh_          15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAH--SGSEFALASTSFS   88 (373)
T ss_pred             hcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcC--CCCEEEEEeecCC
Confidence            345688899999999999988764     334679999999999999887654    33799999  999998764    


Q ss_pred             ------CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEec
Q 024245           84 ------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (270)
Q Consensus        84 ------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  157 (270)
                            .++.|.+||..+++...    .+...........  ..+                             ..+.|+
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~----~~~~~~~~~~~~~--~~~-----------------------------~~~~~s  133 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIA----DIELPDAPRFDVG--PYS-----------------------------WMNANT  133 (373)
T ss_pred             cccccccceEEEEEECCCCcEEE----EEecCCcceeEec--cCC-----------------------------CcEEEE
Confidence                  45789999999886533    2222111111000  000                             015689


Q ss_pred             CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEE
Q 024245          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (270)
Q Consensus       158 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd  237 (270)
                      ++++.+++.....++.+.+|+....+......                ....+. ++|+   |+..+++.+.||.+.+||
T Consensus       134 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~s~~---g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         134 PNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----------------SPTCYH-IHPG---APSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             eCCCcEEEEEEcCCCceEEeeccCCeEEEEec----------------cceeEE-EecC---CCcEEEEEcCCCeEEEEE
Confidence            99998877666667889999998777665554                123344 8874   444778999999999999


Q ss_pred             cCCCCcceeee
Q 024245          238 IRNPGIPLTAM  248 (270)
Q Consensus       238 ~~~~~~~~~~~  248 (270)
                      ... +......
T Consensus       194 ~~~-~~~~~~~  203 (373)
T d2madh_         194 HAG-GAAGAGL  203 (373)
T ss_pred             cCC-ceeeEEE
Confidence            887 5544443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=9e-14  Score=107.52  Aligned_cols=228  Identities=6%  Similarity=-0.099  Sum_probs=137.5

Q ss_pred             CcccccccccccEEEEEEeCCCCEEEEe----------cCCCcEEEEeCCCCceeEEEeecCCC-----cceEEEEEeeC
Q 024245            9 DPVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS   73 (270)
Q Consensus         9 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~   73 (270)
                      +++.++.++...  .++|+|||+.|+.+          +.|+.|.+||..+++.+..+..+...     .....++|+| 
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-  133 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-  133 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-
Confidence            445555555444  58999999988764          35778999999999998887654321     1234689999 


Q ss_pred             CCCCEEEEEe-CCCcEEEEEccCCccCCCCccceec-------ccceEEEEeeccC------------------------
Q 024245           74 IGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKT-------NSYHFCKLSLVKE------------------------  121 (270)
Q Consensus        74 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------------------  121 (270)
                       ||++|+.+. .++.+.+||+.+++...  ....+.       ........+.+..                        
T Consensus       134 -DGk~l~va~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         134 -SSACLLFFLFGSSAAAGLSVPGASDDQ--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             -TSSCEEEEECSSSCEEEEEETTTEEEE--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             -CCCEEEEEeCCCCeEEEEECCCCcEeE--EeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence             999988765 57999999998876543  111000       0000000000000                        


Q ss_pred             ----------Cccc-eecCCCCceEEEeccCceeee-cc--------------CCCCCeEecCCCCeEEEEecC------
Q 024245          122 ----------PYAN-AKQANEPKDCYEREVGETVDT-DS--------------LCDSKDDVPAEGPKYMAVAGE------  169 (270)
Q Consensus       122 ----------~~~~-~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~s~~~~~~~~~~~~------  169 (270)
                                .... ....++....++......... ..              .+...+++++++..++++...      
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence                      0000 001111122223222221111 11              111227888898877664321      


Q ss_pred             -CCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCc-eEEEEecCCCcEEEEEcCCCCcceee
Q 024245          170 -QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNPGIPLTA  247 (270)
Q Consensus       170 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~~~~dg~i~vwd~~~~~~~~~~  247 (270)
                       ....|.+||..+++.+.++..             ...+..+. |+|+   |+ ++++++..|+.|++||..+ ++.+..
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~ly~s~~~~~~v~v~D~~t-gk~~~~  352 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPISN-------------GHDSDAII-AAQD---GASDNYANSAGTEVLDIYDAAS-DQDQSS  352 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEEEEESSS-CEEEEE
T ss_pred             cCCceEEEEECCCCcEeEEecC-------------CCceeEEE-ECCC---CCEEEEEEeCCCCeEEEEECCC-CCEEEE
Confidence             124699999999998887762             23567787 9995   53 3567888899999999999 888888


Q ss_pred             eeccCCCeeEEEee
Q 024245          248 MKVHLEPGLECSMW  261 (270)
Q Consensus       248 ~~~~~~~v~~~~~s  261 (270)
                      ++.. ...+.|++-
T Consensus       353 i~~g-~~P~~l~~~  365 (368)
T d1mdah_         353 VELD-KGPESLSVQ  365 (368)
T ss_dssp             CCCC-SCCCEEECC
T ss_pred             EECC-CCCCEEEEe
Confidence            8753 335666653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=2.1e-13  Score=103.49  Aligned_cols=135  Identities=13%  Similarity=0.056  Sum_probs=95.7

Q ss_pred             CEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEe
Q 024245           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (270)
Q Consensus        77 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (270)
                      +++++++.|++|.+||+.+++...    .++......                                    ....++|
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~----~i~~~~~~~------------------------------------~~~~i~~   41 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDK----VITIADAGP------------------------------------TPMVPMV   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE----EEECTTCTT------------------------------------CCCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEE----EEECCCCCC------------------------------------CccEEEE
Confidence            589999999999999999886543    221110000                                    0001679


Q ss_pred             cCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccC-CCceeeeeeecCCCCCCCceEEEEec-------
Q 024245          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGY-------  228 (270)
Q Consensus       157 s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~p~~~~g~~~l~~~~-------  228 (270)
                      +|||+++++ +++.++.|.+||+.+++.+..+..        +... .......++ |+|+   ++ +++++.       
T Consensus        42 spDg~~l~v-~~~~~~~v~v~D~~t~~~~~~~~~--------~~~~~~~~~~~~v~-~s~d---g~-~l~~~~~~~~~~~  107 (337)
T d1pbyb_          42 APGGRIAYA-TVNKSESLVKIDLVTGETLGRIDL--------STPEERVKSLFGAA-LSPD---GK-TLAIYESPVRLEL  107 (337)
T ss_dssp             CTTSSEEEE-EETTTTEEEEEETTTCCEEEEEEC--------CBTTEEEECTTCEE-ECTT---SS-EEEEEEEEEEECS
T ss_pred             CCCCCEEEE-EECCCCeEEEEECCCCcEEEEEec--------CCCcccccceeeEE-EcCC---Cc-EEEEeecCCccee
Confidence            999988766 566789999999999999888873        2211 122344566 9985   44 565554       


Q ss_pred             -----CCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          229 -----EDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       229 -----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                           .++.+.+||..+ ++....+.. ...+..++|+|||+++
T Consensus       108 ~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l  149 (337)
T d1pbyb_         108 THFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKL  149 (337)
T ss_dssp             SCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCE
T ss_pred             eeccccccceeeccccC-CeEEEeccc-cCCceEEEEcCCCCEE
Confidence                 467899999998 777777775 4568899999999876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.37  E-value=2.1e-12  Score=98.18  Aligned_cols=144  Identities=10%  Similarity=0.074  Sum_probs=93.6

Q ss_pred             EEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeec
Q 024245           68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD  147 (270)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (270)
                      ++|++  ++++|++++.|++|.+||+.+++...  ...++.....                                   
T Consensus         2 ~a~~~--~~~~l~~~~~~~~v~v~D~~t~~~~~--t~~~~~~~~p-----------------------------------   42 (346)
T d1jmxb_           2 PALKA--GHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGP-----------------------------------   42 (346)
T ss_dssp             CCCCT--TCEEEEEEETTTEEEEEETTTTEEEE--EEECSSCCSS-----------------------------------
T ss_pred             ccCCC--CCcEEEEEcCCCEEEEEECCCCCEEE--EEEcCCCCCc-----------------------------------
Confidence            45778  88999999999999999999987543  1111111000                                   


Q ss_pred             cCCCCCeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          148 SLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       148 ~~~~~~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                          ..++|+|||+++++ ++..++.|++||+.+++.+..+...      ............++ |+|+   |+ +++++
T Consensus        43 ----~~l~~spDG~~l~v-~~~~~~~v~~~d~~t~~~~~~~~~~------~~~~~~~~~~~~v~-~s~D---G~-~l~v~  106 (346)
T d1jmxb_          43 ----GTAMMAPDNRTAYV-LNNHYGDIYGIDLDTCKNTFHANLS------SVPGEVGRSMYSFA-ISPD---GK-EVYAT  106 (346)
T ss_dssp             ----CEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEESC------CSTTEEEECSSCEE-ECTT---SS-EEEEE
T ss_pred             ----ceEEECCCCCEEEE-EECCCCcEEEEeCccCeeeeeeccc------ccccccCCceEEEE-EecC---CC-EEEEE
Confidence                01679999998776 5667899999999999988877631      00011112345566 9984   55 55544


Q ss_pred             c------------CCCcEEEEEcCCCCcceeeeecc--CCCeeEEEeecCCCce
Q 024245          228 Y------------EDGSILVWDIRNPGIPLTAMKVH--LEPGLECSMWRNPITM  267 (270)
Q Consensus       228 ~------------~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l  267 (270)
                      +            .++.+.+||..+ ++....+..+  ...+..+.+++++.++
T Consensus       107 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_         107 VNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ecCCcceeeeeccCcceEEEEeccc-ceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            3            578899999887 5544443322  2345666677776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=2.1e-11  Score=94.59  Aligned_cols=237  Identities=9%  Similarity=0.026  Sum_probs=132.3

Q ss_pred             cccccEEEEEEeCCCCEEEEe-cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCE--EEEEeCCC------
Q 024245           16 GHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQGRDG------   86 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~~d~------   86 (270)
                      .|.-......++|||++|+.. ..++.|.++|+.+.+..+.+..... ..+..++|+|  +++.  ++..+++.      
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g-~gphgi~~sp--dg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV-QAIHGLRLQK--VPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-CCEEEEEECC--SSBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC-CCccceEEec--cCCEEEEEeccCCcccccCc
Confidence            355666777778999988554 5678999999999998887764322 5589999999  8774  44444332      


Q ss_pred             -----------cEEEEEccCCccCCCCccceecc-cceEEEEeeccC---------Cc----------------------
Q 024245           87 -----------TVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKE---------PY----------------------  123 (270)
Q Consensus        87 -----------~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~----------------------  123 (270)
                                 .+..+|..+.+...    ++... ......++..+.         ..                      
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~----qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAW----QVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEE----EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             ccccccccccceEEeecCccceeeE----EEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                       22446666554321    11100 000011111100         00                      


Q ss_pred             ---------cceecCCCCceEEEeccCceeeeccCCCCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCc
Q 024245          124 ---------ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (270)
Q Consensus       124 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  192 (270)
                               .......+...++.....+.+.....+...  +.++|||+++++ ++..+++|.+||+.+....  +....
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~-~~~~~~tvsv~d~~k~~~~--~~~~~  298 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIA-NGKLSPTVSVIAIDKLDDL--FEDKI  298 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHH--TTTSS
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEE-eCCcCCcEEEEEeehhhhH--hhccC
Confidence                     000001111112222222333333333333  999999998876 6888999999998753321  11000


Q ss_pred             --CCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC---------CCcceeee-----eccCCCee
Q 024245          193 --CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN---------PGIPLTAM-----KVHLEPGL  256 (270)
Q Consensus       193 --~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~-----~~~~~~v~  256 (270)
                        .....++..... .....+ |.+   +|. .+.+...|..|..|++..         ....+..+     .+|...+.
T Consensus       299 ~~~~~~~~~~~~gl-gplh~~-fd~---~g~-~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~  372 (441)
T d1qnia2         299 ELRDTIVAEPELGL-GPLHTT-FDG---RGN-AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASL  372 (441)
T ss_dssp             CGGGGEEECCBCCS-CEEEEE-ECS---SSE-EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT
T ss_pred             CcceEEEeeccccc-Ccccce-ecC---Cce-EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccc
Confidence              000001111011 122334 887   455 788899999999999742         01223333     58888899


Q ss_pred             EEEeecCCCcee
Q 024245          257 ECSMWRNPITMS  268 (270)
Q Consensus       257 ~~~~s~~g~~ls  268 (270)
                      +.+++|||++|.
T Consensus       373 ~~t~~pdGk~l~  384 (441)
T d1qnia2         373 TESRDADGKWLV  384 (441)
T ss_dssp             TTSTTCCCCEEE
T ss_pred             ccccCCCCcEEE
Confidence            999999999975

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=4.2e-11  Score=91.48  Aligned_cols=125  Identities=9%  Similarity=-0.052  Sum_probs=88.4

Q ss_pred             EEEeCCCCEEEEe-----cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE----------eCCCcE
Q 024245           24 VCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ----------GRDGTV   88 (270)
Q Consensus        24 ~~~s~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~d~~i   88 (270)
                      .+.+||++.++..     ..+..|.+||..+++.+.++..+.    ...++|+|  +|++|++.          ..|+.|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~----~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----LPNPVVAD--DGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----SCEEEECT--TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC----CCceEEcC--CCCEEEEEeCCCccccccCCCCEE
Confidence            3457899988764     345679999999999999887664    34799999  99988754          347899


Q ss_pred             EEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEec
Q 024245           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (270)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  168 (270)
                      ++||..+++...    .+........  .                             .......++|+|++++++++..
T Consensus        81 ~v~D~~t~~~~~----~~~~~~~~~~--~-----------------------------~~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_          81 EVFDPVTLLPTA----DIELPDAPRF--L-----------------------------VGTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             EEECTTTCCEEE----EEEETTCCCC--C-----------------------------BSCCGGGEEECTTSSEEEEEEC
T ss_pred             EEEECCCCCEEE----EEecCCccee--e-----------------------------cCCCCceEEEecCCCeeEEecC
Confidence            999999886533    1111110000  0                             0000011679999999888776


Q ss_pred             CCCceEEEEeCCCcceeeeec
Q 024245          169 EQLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~~  189 (270)
                      ..+..+.+||..+++.+..+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCceeeeeecCCCcEeeEEe
Confidence            778899999999999888776

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.25  E-value=1.8e-10  Score=89.40  Aligned_cols=188  Identities=12%  Similarity=-0.017  Sum_probs=106.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeecC----------------------------CCcceEEEEEeeCCCCCEEEEE-
Q 024245           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------------------AAHGIVSVATGPSIGLNKVISQ-   82 (270)
Q Consensus        32 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~~~l~s~-   82 (270)
                      .++||+.+|.|+||++.+++.++++..-.                            +.-......+.|  ||++|+.. 
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV~d   90 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFIND   90 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEEEc
Confidence            36788899999999999998887763211                            001133444578  88988654 


Q ss_pred             eCCCcEEEEEccCCccCCCCcccee-cccceEEEEeeccCCccceecCCCC------------------ceEEEeccCce
Q 024245           83 GRDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEP------------------KDCYEREVGET  143 (270)
Q Consensus        83 ~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  143 (270)
                      ..++.|.++|+.+.+...  +..++ ....+...++..+............                  ...+|..+.+.
T Consensus        91 ~~~~rVavIDl~t~k~~~--ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDK--ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TTTTEEEEEETTTTEEEE--EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             CCCCEEEEEECCCCcEee--EEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            567899999999887544  22222 1122223333333322222111111                  01234444443


Q ss_pred             eeeccCCCCC--eEecCCCCeEEEEecCC---------------------------------------CceEEEEeCCCc
Q 024245          144 VDTDSLCDSK--DDVPAEGPKYMAVAGEQ---------------------------------------LSEVEIWDLNTA  182 (270)
Q Consensus       144 ~~~~~~~~~~--~~~s~~~~~~~~~~~~~---------------------------------------d~~i~iwd~~~~  182 (270)
                      ......+...  ++++|+|+++++++...                                       ++.+.|++....
T Consensus       169 ~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         169 AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            3332222222  89999998877654221                                       233444444444


Q ss_pred             ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +.+..+..        .     .....+. ++|   ||+++++++..+++|.+||+.+
T Consensus       249 ~v~~~IPv--------g-----ksPhGv~-vSP---DGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         249 EFTRYIPV--------P-----KNPHGLN-TSP---DGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SSEEEECC--------B-----SSCCCEE-ECT---TSCEEEEECTTSSBEEEEEGGG
T ss_pred             ceEEEEeC--------C-----CCccCce-ECC---CCCEEEEeCCcCCcEEEEEeeh
Confidence            44444442        1     1233455 888   5776778889999999999865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=6.7e-10  Score=88.25  Aligned_cols=81  Identities=10%  Similarity=0.001  Sum_probs=65.3

Q ss_pred             ccccccccEEEEEEeCCCCEEEEec---------CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGT---------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (270)
                      ++..|...|.++.|||||++|+.++         .++.+.|||+.+++.. .+..+.  ..+..+.|+|  +|+.|+.. 
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~--~~~~~~~~SP--DG~~ia~~-  129 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIP--NNTQWVTWSP--VGHKLAYV-  129 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCC--TTEEEEEECS--STTCEEEE-
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCC--cccccccccc--CcceeeEe-
Confidence            5667778999999999999998874         3578899999987654 455565  6699999999  99999985 


Q ss_pred             CCCcEEEEEccCCccC
Q 024245           84 RDGTVKCWDIENGGLS   99 (270)
Q Consensus        84 ~d~~i~~wd~~~~~~~   99 (270)
                      .++.+.+|+..+++..
T Consensus       130 ~~~~l~~~~~~~g~~~  145 (470)
T d2bgra1         130 WNNDIYVKIEPNLPSY  145 (470)
T ss_dssp             ETTEEEEESSTTSCCE
T ss_pred             ecccceEEECCCCcee
Confidence            4678999998877543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.8e-08  Score=73.61  Aligned_cols=220  Identities=10%  Similarity=-0.004  Sum_probs=111.0

Q ss_pred             ccccccEEEEEEeCCCCEEEEecCCC---cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCCcEEE
Q 024245           15 RGHRASVTDVCFHQTKPILFAGTTGG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKC   90 (270)
Q Consensus        15 ~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~   90 (270)
                      ..+...+...+|||||+.||-.....   .+.+.+...+..... ..+.  .......|+|  +|..++... .++...+
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~sp--dg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP--RHNGAPAFSP--DGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCS--SCEEEEEECT--TSSEEEEEECTTSSCEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE-eeee--cccccceecC--CCCeeeEeeecCCccce
Confidence            34566788999999999988654332   466666665554433 3344  5578899999  988887544 3444444


Q ss_pred             EEccCCccCCCCccceecccceE-EEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC----eEecCCCCeEEE
Q 024245           91 WDIENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (270)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~  165 (270)
                      +.........  ........... .................+...++.................    ..|+|+++.++.
T Consensus       110 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         110 YVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEETTTCCE--EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             eecccccccc--eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEE
Confidence            4333222111  00111111111 1111111111111112222233322221111111111222    689999998776


Q ss_pred             EecCCCceEEEE--eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC--CCcEEEEEcCCC
Q 024245          166 VAGEQLSEVEIW--DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDIRNP  241 (270)
Q Consensus       166 ~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~--dg~i~vwd~~~~  241 (270)
                      .+. ..+...+|  |...+.. ..+.         .    ........ |+|   ||+.++++...  ...|+++++.. 
T Consensus       188 ~~~-~~~~~~i~~~~~~~~~~-~~~~---------~----~~~~~~p~-~SP---DG~~i~f~s~~~~~~~l~~~~~dg-  247 (269)
T d2hqsa1         188 VSS-NGGQQHIAKQDLATGGV-QVLS---------S----TFLDETPS-LAP---NGTMVIYSSSQGMGSVLNLVSTDG-  247 (269)
T ss_dssp             EEE-CSSCEEEEEEETTTCCE-EECC---------C----SSSCEEEE-ECT---TSSEEEEEEEETTEEEEEEEETTS-
T ss_pred             Eee-cCCceeeeEeecccccc-eEee---------c----CccccceE-ECC---CCCEEEEEEcCCCCcEEEEEECCC-
Confidence            443 34555555  4443332 2222         1    12234455 999   46633344332  34688899885 


Q ss_pred             CcceeeeeccCCCeeEEEeec
Q 024245          242 GIPLTAMKVHLEPGLECSMWR  262 (270)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~s~  262 (270)
                      +. ...+......+...+|||
T Consensus       248 ~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         248 RF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CC-EEECCCSSSEEEEEEECC
T ss_pred             CC-EEEEeCCCCcEEeEEeCC
Confidence            44 445555567788899998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=5.9e-09  Score=77.81  Aligned_cols=224  Identities=5%  Similarity=-0.076  Sum_probs=121.3

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      .+..++++|||+++++...+++|..|+.. ++.. .+....  ..+.+++|.+  +|+++++...++.+..|+.......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~--~~~~gla~~~--dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVE--GKVSGLAFTS--NGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECS--SEEEEEEECT--TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCC--CCcceEEEcC--CCCeEEEecCCceEEEEEecccccc
Confidence            57899999999999999999999888865 3332 333344  5589999999  9999888888888888887654321


Q ss_pred             CCCccceecccceEEEEeeccCCccceecCCCCceEEEe--ccCceeeecc---------CC-CCC-eEecCCCCeEEEE
Q 024245          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER--EVGETVDTDS---------LC-DSK-DDVPAEGPKYMAV  166 (270)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~-~~~-~~~s~~~~~~~~~  166 (270)
                      ...+..... ......+....... ..........+|.+  ..........         .. ... ..++.++..++++
T Consensus       103 ~~~~~~~~~-~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~  180 (302)
T d2p4oa1         103 VETLLTLPD-AIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS  180 (302)
T ss_dssp             EEEEEECTT-CSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE
T ss_pred             eeeccccCC-ccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeee
Confidence            100111111 11111122222111 11222222233322  2222111000         00 011 3344456666654


Q ss_pred             ecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                       ....+.|..++............        ..  .....-.++ +.+   +|. ++++...++.|..++.......+.
T Consensus       181 -~~~~~~i~~~~~~~~~~~~~~~~--------~~--~~~~pdgia-~d~---dG~-l~va~~~~~~V~~i~p~G~~~~~~  244 (302)
T d2p4oa1         181 -NTEKMLLLRIPVDSTDKPGEPEI--------FV--EQTNIDDFA-FDV---EGN-LYGATHIYNSVVRIAPDRSTTIIA  244 (302)
T ss_dssp             -ETTTTEEEEEEBCTTSCBCCCEE--------EE--ESCCCSSEE-EBT---TCC-EEEECBTTCCEEEECTTCCEEEEE
T ss_pred             -cCCCCeEEecccccccccccccc--------cc--CCCCCcceE-ECC---CCC-EEEEEcCCCcEEEECCCCCEEEEE
Confidence             44578888888765433222110        00  011233455 887   465 777777788999987663111223


Q ss_pred             eeeccCCCeeEEEe---ecCCCce
Q 024245          247 AMKVHLEPGLECSM---WRNPITM  267 (270)
Q Consensus       247 ~~~~~~~~v~~~~~---s~~g~~l  267 (270)
                      .....-..+++++|   ++|++.|
T Consensus       245 ~~~~~~~~pt~vafg~~~~D~~~L  268 (302)
T d2p4oa1         245 QAEQGVIGSTAVAFGQTEGDCTAI  268 (302)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEE
T ss_pred             ecCCCCCCceEEEEcCCCCCCCEE
Confidence            33333456889999   5676543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=1.3e-10  Score=89.50  Aligned_cols=188  Identities=10%  Similarity=-0.119  Sum_probs=114.1

Q ss_pred             cccEEEEEEeCCCCE--E-EEecCCCc--EEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe---------
Q 024245           18 RASVTDVCFHQTKPI--L-FAGTTGGE--LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---------   83 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~--l-~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------   83 (270)
                      .+....++..++++.  + +....++.  |.+||..+++.+..+..+.  .  ..++|+|  +|+.|+..+         
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~--~--~~~a~sp--Dg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF--L--SLAVAGH--SGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT--T--CEEEECT--TSSCEEEEEEEETTTTSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC--C--CcceECC--CCCEEEEEcccCcccccc
Confidence            344444556677774  2 23444554  6677999999998888765  2  3589999  999888654         


Q ss_pred             -CCCcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCe
Q 024245           84 -RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (270)
Q Consensus        84 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  162 (270)
                       .|+.|.+||..+++...    .+........                               ........++|+|||++
T Consensus        93 ~~d~~v~v~D~~t~~~~~----~i~~p~~~~~-------------------------------~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIA----DIELPDAPRF-------------------------------SVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             SEEEEEEEECTTTCCEEE----EEEETTSCSC-------------------------------CBSCCTTSEEECTTSSC
T ss_pred             ccCCeEEEEECCCCcEee----eecCCcccee-------------------------------cccCCccceEECCCCCE
Confidence             46789999999886533    1111100000                               00001112789999998


Q ss_pred             EEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCC
Q 024245          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (270)
Q Consensus       163 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~  242 (270)
                      ++++ ...++.+.+||+.+++.+..+..        +..    ..     +.|.  ... .+++.+.||.+.+|++...+
T Consensus       138 l~va-~~~~~~v~~~d~~~~~~~~~~~~--------~~~----~~-----~~~~--~~~-~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         138 LLFF-LFGSSAAAGLSVPGASDDQLTKS--------ASC----FH-----IHPG--AAA-THYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             EEEE-ECSSSCEEEEEETTTEEEEEEEC--------SSC----CC-----CEEE--ETT-EEECCCCTTSCEEEECCSSC
T ss_pred             EEEE-eCCCCeEEEEECCCCcEeEEeec--------cCc----ce-----EccC--CCc-eEEEEcCCCCEEEEEecCCc
Confidence            8864 44579999999999998888773        211    11     2222  122 67778889998888887644


Q ss_pred             cceee-----eeccCCCeeEEEeecCCCce
Q 024245          243 IPLTA-----MKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       243 ~~~~~-----~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .....     +..+...+..+.+.+++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eeeeeeecccccccccceeecccccCcEEE
Confidence            33221     12223334455555555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=9.9e-10  Score=87.25  Aligned_cols=118  Identities=8%  Similarity=0.015  Sum_probs=83.0

Q ss_pred             EEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecC---CCcceEEEEEeeCCCCCEEEEEeC---------CCcEE
Q 024245           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQGR---------DGTVK   89 (270)
Q Consensus        22 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~~---------d~~i~   89 (270)
                      ..+.|.+++++++.  .|+.+.+||+.+++....+..+.   ....|.++.|+|  ||++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCceEE
Confidence            35789999988765  46789999999998776554432   114599999999  9999987743         56788


Q ss_pred             EEEccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  169 (270)
                      +||+.+++...  +   .........                                      ..|||||+.++.+   
T Consensus        96 l~d~~~~~~~~--l---~~~~~~~~~--------------------------------------~~~SPDG~~ia~~---  129 (470)
T d2bgra1          96 IYDLNKRQLIT--E---ERIPNNTQW--------------------------------------VTWSPVGHKLAYV---  129 (470)
T ss_dssp             EEETTTTEECC--S---SCCCTTEEE--------------------------------------EEECSSTTCEEEE---
T ss_pred             EEECCCCcccc--c---ccCCccccc--------------------------------------cccccCcceeeEe---
Confidence            99999886432  1   111111110                                      4599999987653   


Q ss_pred             CCceEEEEeCCCcceeeeec
Q 024245          170 QLSEVEIWDLNTAERCTRLH  189 (270)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~~  189 (270)
                      .++.+.+|+..+++..+...
T Consensus       130 ~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1         130 WNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             ETTEEEEESSTTSCCEECCS
T ss_pred             ecccceEEECCCCceeeeee
Confidence            36789999999887665443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.96  E-value=9e-07  Score=66.01  Aligned_cols=233  Identities=8%  Similarity=-0.003  Sum_probs=122.5

Q ss_pred             ccEEEEEEeCCCCEEEEecC-------CCcEEEEeCCCCceeEEEeecC--CCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           19 ASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHS--AAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      .....++|.++|+++++...       +|.|..||..++..........  ....-..+.|.+  +++.++++...+.|.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~--dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEETTTEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC--CCCEEEEEECCCeEE
Confidence            34567899999997776433       4679999988775543322111  002256899999  888888887777788


Q ss_pred             EEEccCCccCCCCccceecccce-EEEEeeccCCcccee--------------cCCCCceEEEeccCceeee---ccCCC
Q 024245           90 CWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAK--------------QANEPKDCYEREVGETVDT---DSLCD  151 (270)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~  151 (270)
                      ..|...+.... ........... ...+.+.........              .......+|.+........   .+...
T Consensus        96 ~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~p  174 (314)
T d1pjxa_          96 VVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP  174 (314)
T ss_dssp             EEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred             EEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCccee
Confidence            88887653211 00000011000 011111111110000              0011112333322111111   11111


Q ss_pred             CCeEecCCCC----eEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe
Q 024245          152 SKDDVPAEGP----KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (270)
Q Consensus       152 ~~~~~s~~~~----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~  227 (270)
                      ..++|+|++.    .+++ +-+..+.|..||+.....+.......     ..........-.++ +..   +|+ +.++.
T Consensus       175 NGi~~~~d~d~~~~~lyv-~d~~~~~i~~~d~~~~g~~~~~~~~~-----~~~~~~~~~pdGia-vD~---~Gn-lyVa~  243 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWG-----HIPGTHEGGADGMD-FDE---DNN-LLVAN  243 (314)
T ss_dssp             EEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEE-----ECCCCSSCEEEEEE-EBT---TCC-EEEEE
T ss_pred             eeeEECCCCCcceeEEEE-EeecccceEEeeccCccccceeeEEE-----EccccccccceeeE-Eec---CCc-EEEEE
Confidence            2278888765    4544 44557889888876432221111000     00010112233454 665   566 66666


Q ss_pred             cCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCc
Q 024245          228 YEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPIT  266 (270)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  266 (270)
                      ...+.|.+||.+. ++.+..+......+++++|.||++.
T Consensus       244 ~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~  281 (314)
T d1pjxa_         244 WGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKT  281 (314)
T ss_dssp             ETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSE
T ss_pred             cCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCE
Confidence            6778999999886 6677777766678899999999853

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=2.1e-06  Score=64.16  Aligned_cols=229  Identities=9%  Similarity=0.046  Sum_probs=121.8

Q ss_pred             ccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC----CcEEEEEcc
Q 024245           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIE   94 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~   94 (270)
                      ..+..++|.++|++.++-...+.|..|+...++....+....  .....+++.+  +|+++++...+    +.+...+..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~--dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECC--CCCEEEEecCCCccceeEEEEcCC
Confidence            345789999999988887788999999988766555554444  4578999999  98877765432    234444444


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecC-----CCCceEEEecc-Cceee---eccCCCCCeEecCCCCeEEE
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-----NEPKDCYEREV-GETVD---TDSLCDSKDDVPAEGPKYMA  165 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~---~~~~~~~~~~~s~~~~~~~~  165 (270)
                      +.....  .............+.+...........     .....++.+.. +..+.   ..+.....++|+|+++.+++
T Consensus       116 ~~~~~~--~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         116 GDNLQD--IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             SCSCEE--EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             Cceeee--eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence            433211  000000011111122222111111100     01112232221 11111   11122222999999987776


Q ss_pred             EecCCCceEEEEeCCCc-ceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          166 VAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      + -+..+.|..||+... ..........     .+........-.++ +.+   +|. +.++....+.|.+||- . ++.
T Consensus       194 a-d~~~~~I~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~PdGl~-vD~---~G~-l~Va~~~~g~V~~~~p-~-G~~  260 (319)
T d2dg1a1         194 T-ETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDS---DDN-LYVAMYGQGRVLVFNK-R-GYP  260 (319)
T ss_dssp             E-EGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBT---TCC-EEEEEETTTEEEEECT-T-SCE
T ss_pred             e-cccCCceEEEEEcCCCceecccccee-----eeccCCccceeeee-EcC---CCC-EEEEEcCCCEEEEECC-C-CcE
Confidence            4 444789999987632 2211111000     00000111223344 665   566 6777778899999995 4 777


Q ss_pred             eeeeec------cCCCeeEEEeecCCCc
Q 024245          245 LTAMKV------HLEPGLECSMWRNPIT  266 (270)
Q Consensus       245 ~~~~~~------~~~~v~~~~~s~~g~~  266 (270)
                      +..+..      +...+++++|.+++..
T Consensus       261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~  288 (319)
T d2dg1a1         261 IGQILIPGRDEGHMLRSTHPQFIPGTNQ  288 (319)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             EEEEeCCCcCCCcCceeeeEEEeCCCCE
Confidence            776653      3346789999886643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.89  E-value=3.8e-07  Score=69.63  Aligned_cols=184  Identities=11%  Similarity=0.065  Sum_probs=99.9

Q ss_pred             cEEEEEEeCCCCEEEEecC-CCcEEEEeCCCC-cee--EEEeecCCCcceEEEEEeeCCCCCEEEE-EeCCCcEEEEEcc
Q 024245           20 SVTDVCFHQTKPILFAGTT-GGELRIWDTVQH-RTV--SSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~   94 (270)
                      .+.++.|+|+|+++++++. ...|.+|+.... ...  ..............++|+|  ++++++. ...+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p--dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC--CCceEEEeccCCCEEEEEEec
Confidence            4689999999998877654 457888876543 222  2222221125689999999  9888764 4568899999997


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCC---CeEecCCCCeEEEEecCC-
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS---KDDVPAEGPKYMAVAGEQ-  170 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~-  170 (270)
                      .++...  ......       ...........                 .........   .+.++|+|++++++.... 
T Consensus       224 ~~~~~~--~~~~~~-------~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         224 PATHMP--VYTHHS-------FPLIPPGIPDR-----------------DPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             TTTCCE--EEEEEE-------EESSCTTCCCB-----------------CTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             CCCceE--EEEeee-------ecccccccccc-----------------ccccccccCCccceEECCCCCEEEEEcccCC
Confidence            764321  111100       00000000000                 000000000   067999999887654321 


Q ss_pred             ---CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          171 ---LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       171 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                         ...|..|++.....+......      ............++ ++|.  +|++++++...++.|.+|++..
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~------~~~~~~G~~p~~i~-~~p~--~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFL------SPTPTSGGHSNAVS-PCPW--SDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEE------EECSSCCTTCCCEE-ECTT--CTTEEEEECSSSCEEEEEEEET
T ss_pred             CccceEEEEEEecCCCceeeEeEe------eEEEcCCCCccEEE-ecCC--CCCEEEEEeCCCCeEEEEEEeC
Confidence               234777777543322211100      00000112344565 8874  5675666667889999999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=4.3e-06  Score=60.50  Aligned_cols=201  Identities=12%  Similarity=0.004  Sum_probs=99.4

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC-CC--cEEEEEccCCccCCCCccceecccceEEEEe
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (270)
                      .|.|.|...........+ .  ..+.+.+|+|  ||+.|+-... .+  .+.+.+...+....   ............++
T Consensus        20 ~l~i~d~dG~~~~~l~~~-~--~~~~sP~wSP--DGk~IAf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRS-P--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSCEEEEEE-S--SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEEC
T ss_pred             EEEEEcCCCCCcEEEecC-C--CceeeeEECC--CCCEEEEEEeeccCcceeeeecccCceeE---Eeeeecccccceec
Confidence            577878764444444444 3  5588999999  9999985443 33  35555555544211   11111111112222


Q ss_pred             eccCCccceecCCCCceEEEeccCc-eeeeccCCCCC---eEecCCCCeEEEEecCCCc--eEEEEeCCCcceeeeeccC
Q 024245          118 LVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK---DDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQN  191 (270)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~  191 (270)
                      .............+....+...... ...........   ..+++++..+++++ ..++  .|.+.++..+.......  
T Consensus        92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~~~~~~~~~~~~~~~--  168 (269)
T d2hqsa1          92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS-DQAGRPQVYKVNINGGAPQRITW--  168 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTSSCCEECCC--
T ss_pred             CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecc-cccCCceEeeeecccccceeeec--
Confidence            2222222222222222222222221 11112222222   56778887766643 3345  45555665544322222  


Q ss_pred             cCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCcee
Q 024245          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITMS  268 (270)
Q Consensus       192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ls  268 (270)
                                 ......... |+|+   ++.++......+...+|...........+ ..........|||||+.|.
T Consensus       169 -----------~~~~~~~~~-~spd---g~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         169 -----------EGSQNQDAD-VSSD---GKFMVMVSSNGGQQHIAKQDLATGGVQVL-SSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             -----------SSSEEEEEE-ECTT---SSEEEEEEECSSCEEEEEEETTTCCEEEC-CCSSSCEEEEECTTSSEEE
T ss_pred             -----------ccccccccc-cccc---cceeEEEeecCCceeeeEeecccccceEe-ecCccccceEECCCCCEEE
Confidence                       123444555 9984   55355555556666666555423333333 3456677889999999863

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.82  E-value=1.7e-07  Score=71.56  Aligned_cols=208  Identities=5%  Similarity=-0.072  Sum_probs=106.3

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEE--EEEe-CCCcEEEEEcc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV--ISQG-RDGTVKCWDIE   94 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~s~~-~d~~i~~wd~~   94 (270)
                      ...+.-|+|+|++++|+++.. +.+..|.+.....+.....+........+.+++  +++.+  +++. ..+++..+.+.
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~--~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC--CCCEEEEEEecCCCCEEEEeEcc
Confidence            344567999999999888765 568888776432222222111113356778888  77643  3332 24566655543


Q ss_pred             CCccCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCC-eEecCCCCeEEEEecCCCce
Q 024245           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSE  173 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~d~~  173 (270)
                      ...... ..+.+........ ..                        .........|.. +.|+|+|++++++... ...
T Consensus       116 ~~~~~~-~~~~~~~~~~~~~-~~------------------------~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-~d~  168 (365)
T d1jofa_         116 KFAGYG-NVFSVSETGKLEK-NV------------------------QNYEYQENTGIHGMVFDPTETYLYSADLT-ANK  168 (365)
T ss_dssp             SSCCEE-EEEEECTTCCEEE-EE------------------------EEEECCTTCCEEEEEECTTSSEEEEEETT-TTE
T ss_pred             CCCCcc-eeEeeeecceecC-cc------------------------cCcccCCCCcceEEEECCCCCEEEEeeCC-CCE
Confidence            221000 0000000000000 00                        000001111222 8899999988875443 457


Q ss_pred             EEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee--eee--
Q 024245          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT--AMK--  249 (270)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~--  249 (270)
                      |.+|+......+.......     ..  ........+. |+|+   ++.+.++...++.|.+|++.. .....  ...  
T Consensus       169 v~~~~~~~~g~~~~~~~~~-----~~--~~g~gPr~i~-f~pd---g~~~yv~~e~~~~V~v~~~~~-~~~~~~~~~~~~  236 (365)
T d1jofa_         169 LWTHRKLASGEVELVGSVD-----AP--DPGDHPRWVA-MHPT---GNYLYALMEAGNRICEYVIDP-ATHMPVYTHHSF  236 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEE-----CS--STTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEEECT-TTCCEEEEEEEE
T ss_pred             EEEEEccCCCceeecccee-----ec--CCCCceEEEE-ECCC---CceEEEeccCCCEEEEEEecC-CCceEEEEeeee
Confidence            8888765332221111000     00  0112345566 9994   654667777889999999976 33211  111  


Q ss_pred             ---------------ccCCCeeEEEeecCCCce
Q 024245          250 ---------------VHLEPGLECSMWRNPITM  267 (270)
Q Consensus       250 ---------------~~~~~v~~~~~s~~g~~l  267 (270)
                                     .+......+.++|||++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccCCccceEECCCCCEE
Confidence                           011234578999999885

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=2.1e-06  Score=62.19  Aligned_cols=217  Identities=8%  Similarity=-0.054  Sum_probs=112.3

Q ss_pred             ccEEEEEEeCCCCEEEE-ecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           19 ASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      -.-.++++.++|.+.++ .+..+.+..++..............  .....+++.+  +++++++....+.+++++-.+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~gvav~~--~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL--YQPQGLAVDG--AGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC--CSCCCEEECT--TCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc--cCceEEEEcC--CCCEEEeeeeeceeeeeeeccce
Confidence            34589999999996554 4556777777665433222211111  3357889999  88877777666666666544433


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCc--eeeeccCC---CCCeEecCCCCeEEEEecCCCc
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLC---DSKDDVPAEGPKYMAVAGEQLS  172 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~s~~~~~~~~~~~~~d~  172 (270)
                      ...    ...... ....+.+...... ..........+.+....  .......+   ...+++.+++.. +++ ...++
T Consensus        90 ~~~----~~~~~~-~p~~iavd~~g~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~-~v~-~~~~~  161 (260)
T d1rwia_          90 TVL----PFDGLN-YPEGLAVDTQGAV-YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV-YVT-DTDNN  161 (260)
T ss_dssp             EEC----CCCSCC-SEEEEEECTTCCE-EEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCE-EEE-EGGGT
T ss_pred             eee----eeeeee-eccccccccccee-EeeccccccccccccccceeeeeeecccCCcceeeecCCCCE-eee-ccccc
Confidence            211    111111 1122232222111 11111122222222211  11111111   111889999874 443 33467


Q ss_pred             eEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeee-cc
Q 024245          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VH  251 (270)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~  251 (270)
                      .|..+|....... .+..       .    .......++ +.+   +|. ++++....+.|..++... . ....+. ..
T Consensus       162 ~i~~~d~~~~~~~-~~~~-------~----~~~~p~gi~-~d~---~g~-l~vsd~~~~~i~~~~~~~-~-~~~~~~~~~  222 (260)
T d1rwia_         162 RVVKLEAESNNQV-VLPF-------T----DITAPWGIA-VDE---AGT-VYVTEHNTNQVVKLLAGS-T-TSTVLPFTG  222 (260)
T ss_dssp             EEEEECTTTCCEE-ECCC-------S----SCCSEEEEE-ECT---TCC-EEEEETTTTEEEEECTTC-S-CCEECCCCS
T ss_pred             cccccccccceee-eeec-------c----ccCCCccce-eee---eee-eeeeecCCCEEEEEeCCC-C-eEEEEccCC
Confidence            8999997754332 2321       1    123345666 877   455 777888888888887664 2 222222 22


Q ss_pred             CCCeeEEEeecCCCc
Q 024245          252 LEPGLECSMWRNPIT  266 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~  266 (270)
                      -.....|+++++|.+
T Consensus       223 ~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         223 LNTPLAVAVDSDRTV  237 (260)
T ss_dssp             CCCEEEEEECTTCCE
T ss_pred             CCCeEEEEEeCCCCE
Confidence            246789999998854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.61  E-value=1.6e-05  Score=58.63  Aligned_cols=83  Identities=11%  Similarity=0.128  Sum_probs=59.9

Q ss_pred             ccccccccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCc-eeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 024245           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (270)
Q Consensus        13 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w   91 (270)
                      .+......+.+++|+++|+++++...++.+.+|+..... ....+...........+.+.+  +++++++-+.++.+..+
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~--~g~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLI  139 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc--CCCEEeeccccccceee
Confidence            344456789999999999999988888888888875432 222222222225588999999  98888888888888888


Q ss_pred             EccCCc
Q 024245           92 DIENGG   97 (270)
Q Consensus        92 d~~~~~   97 (270)
                      |...+.
T Consensus       140 ~~~~~~  145 (302)
T d2p4oa1         140 DVVQPS  145 (302)
T ss_dssp             ETTTTE
T ss_pred             eccCCc
Confidence            877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=1.3e-05  Score=58.47  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=103.3

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCc
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   97 (270)
                      ......+++.++|.++++....+.+.+++.. ++.+..+...........+++.+  +++.+++....+.|.+||.....
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~--~g~i~v~d~~~~~V~~~d~~G~~  189 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYEGQY  189 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETTCCE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc--ceeEEeeeccccceeeeecCCce
Confidence            3456788888888888877777778888754 56666664433335678899998  88888888888999999875431


Q ss_pred             cCCCCccceecccceEEEEeeccCCccceecCCCCceEEEeccCceeeeccCCCCCeEecCCCCeEEEEecCCCceEEEE
Q 024245           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (270)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~~i~iw  177 (270)
                      .     ..+....                                    .+.....+++.++|+ ++++-...++.|.+|
T Consensus       190 ~-----~~~g~~g------------------------------------~~~~P~giavD~~G~-i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         190 L-----RQIGGEG------------------------------------ITNYPIGVGINSNGE-ILIADNHNNFNLTIF  227 (279)
T ss_dssp             E-----EEESCTT------------------------------------TSCSEEEEEECTTCC-EEEEECSSSCEEEEE
T ss_pred             e-----eeecccc------------------------------------cccCCcccccccCCe-EEEEECCCCcEEEEE
Confidence            1     1111000                                    000000167889997 444433345679999


Q ss_pred             eCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCC
Q 024245          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (270)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~  240 (270)
                      +. +++.+.++..        ..  .......++ +.|   +|. ++ +++.+..|++|....
T Consensus       228 ~~-~G~~~~~~~~--------~~--~~~~p~~va-v~~---dG~-l~-V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         228 TQ-DGQLISALES--------KV--KHAQCFDVA-LMD---DGS-VV-LASKDYRLYIYRYVQ  273 (279)
T ss_dssp             CT-TSCEEEEEEE--------SS--CCSCEEEEE-EET---TTE-EE-EEETTTEEEEEECSC
T ss_pred             CC-CCCEEEEEeC--------CC--CCCCEeEEE-EeC---CCc-EE-EEeCCCeEEEEEeee
Confidence            85 5887777752        10  122456666 777   564 44 445788999999876

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=4e-05  Score=55.82  Aligned_cols=221  Identities=8%  Similarity=0.058  Sum_probs=119.1

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC----CcceEEEEEeeCCCCCEEEE-EeCCCcEEEEEcc
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIE   94 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~   94 (270)
                      ....++++++|+++++-...+.|++||.+ ++.+..+.....    ...-..+++.+. .+..+++ .+.++.|..++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccccc
Confidence            46899999999988887778899999965 666666532211    112345666551 2344443 3345567676654


Q ss_pred             CCccCCCCccceecc-cceEEEEeeccCCccceecCCCCceEEEecc-Cceeeec-cCCCCC----eEecCCCCeEEEEe
Q 024245           95 NGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTD-SLCDSK----DDVPAEGPKYMAVA  167 (270)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~----~~~s~~~~~~~~~~  167 (270)
                      .. ...    .+... ......+.+...... .........++.+.. ++.+... ...+..    +++.+++. +++ +
T Consensus       102 g~-~~~----~~~~~~~~~p~~~avd~~G~i-~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v-~  173 (279)
T d1q7fa_         102 GQ-FVR----KFGATILQHPRGVTVDNKGRI-IVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFI-S  173 (279)
T ss_dssp             SC-EEE----EECTTTCSCEEEEEECTTSCE-EEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEE-E
T ss_pred             cc-cee----ecCCCcccccceeccccCCcE-EEEeeccceeeEeccCCceeecccccccccccceeeecccee-EEe-e
Confidence            32 111    11111 111222333322221 122222222222222 2222211 111111    77888885 444 3


Q ss_pred             cCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEe-cCCCcEEEEEcCCCCccee
Q 024245          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~-~~dg~i~vwd~~~~~~~~~  246 (270)
                      ....+.|++||.. ++.+.++..+      +.    ......++ +.|   +|+ ++++- ..++.|.+|+..  ++.+.
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~------g~----~~~P~gia-vD~---~G~-i~Vad~~~~~~v~~f~~~--G~~~~  235 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGE------GI----TNYPIGVG-INS---NGE-ILIADNHNNFNLTIFTQD--GQLIS  235 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCT------TT----SCSEEEEE-ECT---TCC-EEEEECSSSCEEEEECTT--SCEEE
T ss_pred             eccccceeeeecC-Cceeeeeccc------cc----ccCCcccc-ccc---CCe-EEEEECCCCcEEEEECCC--CCEEE
Confidence            4457899999975 6777666421      11    22345666 887   455 55554 345679999844  67776


Q ss_pred             eeecc--CCCeeEEEeecCCCcee
Q 024245          247 AMKVH--LEPGLECSMWRNPITMS  268 (270)
Q Consensus       247 ~~~~~--~~~v~~~~~s~~g~~ls  268 (270)
                      .+...  ......|++.|||.++-
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEE
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEE
Confidence            66432  24578999999997653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.1e-06  Score=64.89  Aligned_cols=72  Identities=10%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEe---------CCCcEEEEEc
Q 024245           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDI   93 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~---------~d~~i~~wd~   93 (270)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..... ...+....|+|  |+++++...         ..+.+.++|+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEEEc
Confidence            468888876654 5578899999998876544443321 13477888999  999877653         3567889999


Q ss_pred             cCCcc
Q 024245           94 ENGGL   98 (270)
Q Consensus        94 ~~~~~   98 (270)
                      .++..
T Consensus        99 ~~~~~  103 (465)
T d1xfda1          99 PHGDP  103 (465)
T ss_dssp             SSCCC
T ss_pred             cCCce
Confidence            98764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=7.5e-05  Score=54.80  Aligned_cols=217  Identities=11%  Similarity=0.041  Sum_probs=121.4

Q ss_pred             EEEEEeC-CCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        22 ~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      .+..|.+ ++.+..+=-..+.|..||.++++.. .+...   ..+.++++.+  ++.++++ +.+ -+.++|..+++...
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~---~~~~~i~~~~--dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP---FMGSALAKIS--DSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS---SCEEEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC---CCcEEEEEec--CCCEEEE-EeC-ccEEeecccceeeE
Confidence            4567887 5555555556788999999877543 34332   4588999988  8666664 444 48899999886432


Q ss_pred             CCccceecccc--eEEEEeeccCCccceec-----CCCCceEEEeccCceeee--ccCCCCCeEecCCCCeEEEEecCCC
Q 024245          101 NPSLTIKTNSY--HFCKLSLVKEPYANAKQ-----ANEPKDCYEREVGETVDT--DSLCDSKDDVPAEGPKYMAVAGEQL  171 (270)
Q Consensus       101 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~d  171 (270)
                        +........  ......++.........     ......++.+..++....  .+.....++|+++++.++++ .+..
T Consensus        93 --l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~-dt~~  169 (295)
T d2ghsa1          93 --HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFV-DTKV  169 (295)
T ss_dssp             --EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEE-ETTT
T ss_pred             --EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEe-eccc
Confidence              111111111  11222222221111110     112233455554432221  11111228999999887764 4557


Q ss_pred             ceEEEEeCCCcc--e---eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCccee
Q 024245          172 SEVEIWDLNTAE--R---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (270)
Q Consensus       172 ~~i~iwd~~~~~--~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~  246 (270)
                      +.|..|++....  .   ...+..         .....+..-.++ +..   +|. +.++.-..+.|..||- . ++.+.
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~---------~~~~~g~pdG~~-vD~---~Gn-lWva~~~~g~V~~~dp-~-G~~~~  233 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFID---------STGIKGGMDGSV-CDA---EGH-IWNARWGEGAVDRYDT-D-GNHIA  233 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEE---------CTTSSSEEEEEE-ECT---TSC-EEEEEETTTEEEEECT-T-CCEEE
T ss_pred             ceeeEeeecccccccccceEEEec---------cCcccccccceE-EcC---CCC-EEeeeeCCCceEEecC-C-CcEee
Confidence            889988874221  1   111110         011223344555 655   565 5556556778999995 4 77888


Q ss_pred             eeeccCCCeeEEEee-cCCC
Q 024245          247 AMKVHLEPGLECSMW-RNPI  265 (270)
Q Consensus       247 ~~~~~~~~v~~~~~s-~~g~  265 (270)
                      .+.-....+++++|- ||..
T Consensus       234 ~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         234 RYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEECSCSBEEEEEEESTTSC
T ss_pred             EecCCCCceEEEEEeCCCCC
Confidence            887666779999996 5553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.48  E-value=6.7e-05  Score=55.60  Aligned_cols=199  Identities=9%  Similarity=-0.030  Sum_probs=106.0

Q ss_pred             EEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCC--cceEEEEEeeCCCCCEEEEEeCC-------------
Q 024245           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HGIVSVATGPSIGLNKVISQGRD-------------   85 (270)
Q Consensus        21 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~~d-------------   85 (270)
                      -..++|.+++..++++...+.|...+...+............  ...+.+++.+  +|++.++-...             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceecc
Confidence            467999999988877777677888887754322211111110  1257799999  88877764321             


Q ss_pred             CcEEEEEccC-CccCCCCccceecc-cceEEEEeeccCCc--cceecCCCC--ceEEEeccCcee-----eeccCCCC--
Q 024245           86 GTVKCWDIEN-GGLSSNPSLTIKTN-SYHFCKLSLVKEPY--ANAKQANEP--KDCYEREVGETV-----DTDSLCDS--  152 (270)
Q Consensus        86 ~~i~~wd~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~--  152 (270)
                      ..-++|.+.. ++...    ..... ......++......  .........  +..+++.....+     ...+.+..  
T Consensus       151 ~~G~v~~~~~dg~~~~----~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQ----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SCEEEEEECTTSCEEE----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             CCceEEEEeecCceeE----eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence            1113343322 11110    01100 01111222222111  122222222  333444333221     11222211  


Q ss_pred             ---CeEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecC
Q 024245          153 ---KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (270)
Q Consensus       153 ---~~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~  229 (270)
                         .+++..+|+.+++ .. ..+.|.+||...++.+..+..        .    .....+++ |.|+   ++.++++.+.
T Consensus       227 ~pdGiavD~~GnlyVa-~~-~~g~I~~~dp~~g~~~~~i~~--------p----~~~~t~~a-fg~d---~~~lyVt~~~  288 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVA-NW-GSSHIEVFGPDGGQPKMRIRC--------P----FEKPSNLH-FKPQ---TKTIFVTEHE  288 (314)
T ss_dssp             EEEEEEEBTTCCEEEE-EE-TTTEEEEECTTCBSCSEEEEC--------S----SSCEEEEE-ECTT---SSEEEEEETT
T ss_pred             cceeeEEecCCcEEEE-Ec-CCCEEEEEeCCCCEEEEEEEC--------C----CCCEEEEE-EeCC---CCEEEEEECC
Confidence               1889999974443 32 358899999988877766662        1    12455676 9884   4437788888


Q ss_pred             CCcEEEEEcCCCCc
Q 024245          230 DGSILVWDIRNPGI  243 (270)
Q Consensus       230 dg~i~vwd~~~~~~  243 (270)
                      +|.|...++..+++
T Consensus       289 ~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         289 NNAVWKFEWQRNGK  302 (314)
T ss_dssp             TTEEEEEECSSCBC
T ss_pred             CCcEEEEECCCCCh
Confidence            99999999887664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.09  E-value=0.00066  Score=48.71  Aligned_cols=68  Identities=15%  Similarity=0.036  Sum_probs=47.3

Q ss_pred             EEeCC--CCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEe-CCC-----cEEEEEccCC
Q 024245           25 CFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG-----TVKCWDIENG   96 (270)
Q Consensus        25 ~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~-----~i~~wd~~~~   96 (270)
                      ..+|+  |+.+|-.+ ++.|.+.|+.+++..+ +..+.  ..+...+|+|  ||+.|+-.. .++     .|.+++..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~--~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNL--GVINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSS--SEEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCC--CcccCEEECC--CCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35788  88887664 4679999999887654 44444  5588999999  999988443 222     3666677666


Q ss_pred             cc
Q 024245           97 GL   98 (270)
Q Consensus        97 ~~   98 (270)
                      +.
T Consensus        79 ~~   80 (281)
T d1k32a2          79 EI   80 (281)
T ss_dssp             EE
T ss_pred             ce
Confidence            54

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.00053  Score=49.04  Aligned_cols=191  Identities=9%  Similarity=-0.067  Sum_probs=98.2

Q ss_pred             cEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccC
Q 024245           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (270)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   99 (270)
                      ....++++++|.++++....+.+++++-.+...+......   ....++++.+  +++++++-..+..+..++.......
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~---~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL---NYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC---CSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee---eecccccccc--cceeEeeccccccccccccccceee
Confidence            3567899999988888777777777665555444333222   4478999999  8888777666677777776554321


Q ss_pred             CCCccceecccceEEEEeeccCCccceecCC--CCceEEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCCCceE
Q 024245          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV  174 (270)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~d~~i  174 (270)
                      .   ...... .....+.+..... ......  .....++.............-..   +++.++|. +++ +....+.|
T Consensus       133 ~---~~~~~~-~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~v-sd~~~~~i  205 (260)
T d1rwia_         133 V---LPFTGL-NDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYV-TEHNTNQV  205 (260)
T ss_dssp             E---CCCCSC-CSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEE-EETTTTEE
T ss_pred             e---eeeccc-CCcceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeee-eee-eecCCCEE
Confidence            1   111111 1111122222211 111111  22222333322222211111111   88989986 444 44456778


Q ss_pred             EEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcC
Q 024245          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (270)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~  239 (270)
                      ..++..... ...+..       .    .......++ +.+   +|. ++++-..+++|+..+..
T Consensus       206 ~~~~~~~~~-~~~~~~-------~----~~~~P~~i~-~d~---~g~-l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         206 VKLLAGSTT-STVLPF-------T----GLNTPLAVA-VDS---DRT-VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEECTTCSC-CEECCC-------C----SCCCEEEEE-ECT---TCC-EEEEEGGGTEEEEECCC
T ss_pred             EEEeCCCCe-EEEEcc-------C----CCCCeEEEE-EeC---CCC-EEEEECCCCEEEEEeCC
Confidence            888765332 222221       0    112345666 776   354 66665666666655544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.96  E-value=0.0015  Score=48.17  Aligned_cols=184  Identities=11%  Similarity=-0.023  Sum_probs=90.5

Q ss_pred             cccccEEEEEEeCCCCEEEEecC----CCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------
Q 024245           16 GHRASVTDVCFHQTKPILFAGTT----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------   85 (270)
Q Consensus        16 ~h~~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------   85 (270)
                      ........++++++|+++++...    .+.+...+...+.................+++.+  +|++.++....      
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~--~G~l~vtd~~~~~~~~~  156 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPL  156 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCC
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe--ccceeecccccccccCc
Confidence            34456789999999987776533    2345555555544443333222224578899999  88876664321      


Q ss_pred             CcEEEEEccCCccCCCCccceecccceEEEEeeccCCccceecC--CCCceEEEeccCc--------eeeeccCCCCC--
Q 024245           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGE--------TVDTDSLCDSK--  153 (270)
Q Consensus        86 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~--  153 (270)
                      +.+..++...+...     .+.........+.+.......+...  ...+..+++....        .......+...  
T Consensus       157 g~v~~~~~dg~~~~-----~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~Pd  231 (319)
T d2dg1a1         157 GGVYYVSPDFRTVT-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD  231 (319)
T ss_dssp             EEEEEECTTSCCEE-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred             ceeEEEecccceeE-----EEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcccee
Confidence            22433443332211     1111111111122222222222222  2233334443221        11111122211  


Q ss_pred             -eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCC
Q 024245          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (270)
Q Consensus       154 -~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (270)
                       +++.++|..+++ . ...+.|.+||. +++.+.++..+      +..........+++ |.|.
T Consensus       232 Gl~vD~~G~l~Va-~-~~~g~V~~~~p-~G~~l~~i~~P------~~~~~~~~~~~~~~-~~~~  285 (319)
T d2dg1a1         232 SCCIDSDDNLYVA-M-YGQGRVLVFNK-RGYPIGQILIP------GRDEGHMLRSTHPQ-FIPG  285 (319)
T ss_dssp             EEEEBTTCCEEEE-E-ETTTEEEEECT-TSCEEEEEECT------TGGGTCSCBCCEEE-ECTT
T ss_pred             eeeEcCCCCEEEE-E-cCCCEEEEECC-CCcEEEEEeCC------CcCCCcCceeeeEE-EeCC
Confidence             899999974443 3 33689999995 68888887642      11111122455666 8874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.001  Score=51.97  Aligned_cols=76  Identities=7%  Similarity=-0.071  Sum_probs=53.7

Q ss_pred             ccEEEEEEeCCCCEEEEe---------cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 024245           19 ASVTDVCFHQTKPILFAG---------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (270)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~   89 (270)
                      -.+....||||+++++.+         +..+.+.++|+.+++.............+....|+|  +|+.|+-.. ++.|.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc--CCceEEEEe-cceEE
Confidence            356778899999987765         346789999999887654433322224567789999  999988655 55677


Q ss_pred             EEEccCCc
Q 024245           90 CWDIENGG   97 (270)
Q Consensus        90 ~wd~~~~~   97 (270)
                      +.+..++.
T Consensus       138 ~~~~~~~~  145 (465)
T d1xfda1         138 YCAHVGKQ  145 (465)
T ss_dssp             EESSSSSC
T ss_pred             EEecCCCc
Confidence            77776554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=0.0022  Score=45.79  Aligned_cols=84  Identities=7%  Similarity=-0.007  Sum_probs=51.9

Q ss_pred             cccccccccEEEEEEeCCCCEEEEecC----C--CcEEEEeCCCCceeEEEeecC----CCcceEEEEEeeCCCCCEEEE
Q 024245           12 AVLRGHRASVTDVCFHQTKPILFAGTT----G--GELRIWDTVQHRTVSSSWVHS----AAHGIVSVATGPSIGLNKVIS   81 (270)
Q Consensus        12 ~~~~~h~~~v~~~~~s~~~~~l~s~~~----d--g~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s   81 (270)
                      +.|..+.+.+...+|||||+.||-...    +  ..|.+++...++..+......    .........|+|  +|+.|+.
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp--dg~~l~~  111 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNLIIS  111 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCEEEE
T ss_pred             EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC--CCCEEEE
Confidence            445567778899999999998875432    2  247777877776654322110    002356788999  9998876


Q ss_pred             EeCC------CcEEEEEccCCc
Q 024245           82 QGRD------GTVKCWDIENGG   97 (270)
Q Consensus        82 ~~~d------~~i~~wd~~~~~   97 (270)
                      ....      ..+...+...+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2         112 TDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTE
T ss_pred             EEccCCCccceeeeeecCCCce
Confidence            5332      234455555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.27  E-value=0.016  Score=41.89  Aligned_cols=184  Identities=11%  Similarity=0.017  Sum_probs=98.4

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEee--cCCCcceEEEEEeeCCCCCEEEEEeC----CCcEEEE
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCW   91 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~----d~~i~~w   91 (270)
                      ...+.++++.++|.++++ +.+ .|.++|..+++.......  ......++.+.+.|  +|++.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~--~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC--CCCEEEEeccccccccceeEe
Confidence            456888999889877765 445 499999998875543322  11113578899999  8887775432    2345677


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecCCCCceE--EEeccCc-------eeeeccCCCCC----eEecC
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--YEREVGE-------TVDTDSLCDSK----DDVPA  158 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~----~~~s~  158 (270)
                      .+..++...    ...... ....+.+................+  +++....       .......+...    +++..
T Consensus       134 ~~~~g~~~~----~~~~~~-~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         134 HVAKGKVTK----LFADIS-IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             EEETTEEEE----EEEEES-SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             eecCCcEEE----EeeccC-CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            776664322    111111 111222222222222333333333  3332111       11111222222    88889


Q ss_pred             CCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec
Q 024245          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (270)
Q Consensus       159 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~  228 (270)
                      +|...++.-+  .+.|..||. +++.+..+..+            ...+++++ |-..  |.+.+++|..
T Consensus       209 ~GnlWva~~~--~g~V~~~dp-~G~~~~~i~lP------------~~~~T~~~-FGG~--d~~~LyvTta  260 (295)
T d2ghsa1         209 EGHIWNARWG--EGAVDRYDT-DGNHIARYEVP------------GKQTTCPA-FIGP--DASRLLVTSA  260 (295)
T ss_dssp             TSCEEEEEET--TTEEEEECT-TCCEEEEEECS------------CSBEEEEE-EEST--TSCEEEEEEB
T ss_pred             CCCEEeeeeC--CCceEEecC-CCcEeeEecCC------------CCceEEEE-EeCC--CCCEEEEEEC
Confidence            9975543223  478999995 58888888741            22466776 8632  3433555544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.017  Score=41.05  Aligned_cols=221  Identities=6%  Similarity=-0.072  Sum_probs=119.9

Q ss_pred             cccccccEEEEEEeCCCCEEEEe-cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEE-EEeCCCcEEEE
Q 024245           14 LRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (270)
Q Consensus        14 ~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~w   91 (270)
                      +..+...+.+++|.+..+.|+-. ..++.|+..++........+....  ..+.++++..  -++.|. +-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~--~~p~~iAvD~--~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc--ccccEEEEec--cCCeEEEeccCCCEEEEE
Confidence            44455668889999866655544 556789888887655544443333  4478999976  445554 55567799999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceecC-C-CCceEEEe--ccCceeeeccCCCC---CeEecCCCCeEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N-EPKDCYER--EVGETVDTDSLCDS---KDDVPAEGPKYM  164 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~---~~~~s~~~~~~~  164 (270)
                      ++.......  +  ..........+.++......+... + ....++..  ...........+-.   .+++.+.++.++
T Consensus       107 ~~dg~~~~~--l--~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         107 KMDGTQRRV--L--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             ETTSCSCEE--E--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             ecCCceEEE--E--ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEE
Confidence            987654311  1  111112223333333222222111 1 12223322  22111111111111   188888888777


Q ss_pred             EEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcc
Q 024245          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (270)
Q Consensus       165 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~  244 (270)
                      .+-. ..+.|...|+........+.        +.     .....++ +.    ++. +.++-...+.|...|..+ ++.
T Consensus       183 w~d~-~~~~I~~~~~~g~~~~~v~~--------~~-----~~P~~la-v~----~~~-lYwtd~~~~~I~~~~~~~-g~~  241 (263)
T d1npea_         183 WVDA-GTHRAECLNPAQPGRRKVLE--------GL-----QYPFAVT-SY----GKN-LYYTDWKTNSVIAMDLAI-SKE  241 (263)
T ss_dssp             EEET-TTTEEEEEETTEEEEEEEEE--------CC-----CSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-TEE
T ss_pred             EEeC-CCCEEEEEECCCCCeEEEEC--------CC-----CCcEEEE-EE----CCE-EEEEECCCCEEEEEECCC-Ccc
Confidence            6533 46889999987544333333        11     1233454 43    233 566666778899999988 665


Q ss_pred             eeeee-ccCCCeeEEEeecC
Q 024245          245 LTAMK-VHLEPGLECSMWRN  263 (270)
Q Consensus       245 ~~~~~-~~~~~v~~~~~s~~  263 (270)
                      ...+. .......+|+..++
T Consensus       242 ~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         242 MDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEECCSSCCCCCCEEEECS
T ss_pred             ceEECCCCCCCcceEEEeCC
Confidence            55443 33355667776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.17  E-value=0.028  Score=42.54  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             EEEEeC---CCCEEEEec-CCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC
Q 024245           23 DVCFHQ---TKPILFAGT-TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (270)
Q Consensus        23 ~~~~s~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (270)
                      .++|..   ||++|+... .+..|.+-|+...++.+.+..... ..+..+...+..+..+++..+++
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC-CCCceeecccCCCeEEEEccCcc
Confidence            566654   788877654 678999999999988776654332 44677776542255677777664

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.13  E-value=0.22  Score=39.43  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .|.|.-+|+.+++.+.+...       +.  +..+..+..+       .|  ++++|+.||.++.+|.++ ++.+..++-
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~-------~~--~~~~g~l~Ta-------gg--lVf~G~~dg~l~A~Da~t-Ge~lW~~~l  503 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWE-------KF--AAWGGTLYTK-------GG--LVWYATLDGYLKALDNKD-GKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-------SS--CCCSBCEEET-------TT--EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cccEEEeccCCCceeeEcCC-------CC--CCCcceeEec-------CC--EEEEECCCCeEEEEECCC-CcEEEEEEC
Confidence            36899999999998877763       11  1111222211       23  778899999999999999 888888764


Q ss_pred             cCCCee--EEEeecCCC
Q 024245          251 HLEPGL--ECSMWRNPI  265 (270)
Q Consensus       251 ~~~~v~--~~~~s~~g~  265 (270)
                      .. .+.  -+.|..||+
T Consensus       504 ~~-~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         504 PS-GGIGSPMTYSFKGK  519 (571)
T ss_dssp             SS-CCCSCCEEEEETTE
T ss_pred             CC-CceecceEEEECCE
Confidence            22 222  255666775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.02  E-value=0.26  Score=39.18  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .|.|.-+|+.+++.+.+...       ++  +..+...+.        .|. ++++|+.||.++.+|.++ ++.+..++-
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~-------~~--p~~~g~lst--------agg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE-------HL--PLWAGVLAT--------AGN-LVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-------SS--CCCSCCEEE--------TTT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCC-------CC--CCccceeEE--------cCC-eEEEeCCCCeEEEEECCC-CcEeEEEEC
Confidence            47889999999998888773       11  112222222        233 777899999999999999 888888874


Q ss_pred             cCCCe-eEEEeecCCC
Q 024245          251 HLEPG-LECSMWRNPI  265 (270)
Q Consensus       251 ~~~~v-~~~~~s~~g~  265 (270)
                      ..... .-+.|..||+
T Consensus       526 ~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         526 GSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SSCCCSCCEEEEETTE
T ss_pred             CCCccccCEEEEECCE
Confidence            32211 1266777775

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.01  E-value=0.18  Score=37.33  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=46.2

Q ss_pred             EEEeCCCCEEEEecCCC-----------cEEEEeCCCCceeEEEeecCC-CcceEEEEEeeCCCCCEEEEEeCC-CcEEE
Q 024245           24 VCFHQTKPILFAGTTGG-----------ELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRD-GTVKC   90 (270)
Q Consensus        24 ~~~s~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~   90 (270)
                      .....+|++++.|+.+.           .+.+||..+++....-..... .....+.++.+  ++.+++.|+.+ ..+.+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec--CCcEEEeecCCCcceeE
Confidence            33445888888777431           377999988764432211110 02234667778  88888887655 58999


Q ss_pred             EEccCCcc
Q 024245           91 WDIENGGL   98 (270)
Q Consensus        91 wd~~~~~~   98 (270)
                      ||..+...
T Consensus       103 yd~~~~~w  110 (387)
T d1k3ia3         103 YDSSSDSW  110 (387)
T ss_dssp             EEGGGTEE
T ss_pred             ecCccCcc
Confidence            99988754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.94  E-value=0.28  Score=38.89  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      |.+.-||+.+++.+.+++..         .+..+...+.        .|. ++++|+.||.++.+|.++ ++.+.+++-.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~---------~p~~gg~lst--------agg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV---------SPWNGGTLTT--------AGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES---------SSCCCCEEEE--------TTT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ccEEEeCCCCCceEeeecCC---------CCCCCceEEE--------cCC-EEEEECCCCeEEEEECCC-CcEeEEEECC
Confidence            68999999999998887631         1112222222        233 788899999999999999 8888887642


Q ss_pred             CCCeeE--EEeecCCC
Q 024245          252 LEPGLE--CSMWRNPI  265 (270)
Q Consensus       252 ~~~v~~--~~~s~~g~  265 (270)
                      . .+..  +.|..||+
T Consensus       518 ~-~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         518 T-GVVAAPSTYMVDGR  532 (573)
T ss_dssp             S-CCCSCCEEEEETTE
T ss_pred             C-CccccCEEEEECCE
Confidence            2 2211  45566775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.66  E-value=0.36  Score=38.08  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=49.9

Q ss_pred             CceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeec
Q 024245          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (270)
Q Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  250 (270)
                      .|.|.-||+.+++.+.++...         .+..+..++.+        +. ++++|+.||.++.+|.++ ++.+..++-
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~---------~~~~gg~l~Ta--------gg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYP---------THWNGGTLSTA--------GN-LVFQGTAAGQMHAYSADK-GEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEES---------SSCCCCEEEET--------TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeeccCC---------CCCCCceeEEC--------CC-EEEEECCCCcEEEEECCC-CcEeEEEEC
Confidence            367889999999988877631         11122222221        22 788899999999999999 888888874


Q ss_pred             cCCCe-eEEEeecCCC
Q 024245          251 HLEPG-LECSMWRNPI  265 (270)
Q Consensus       251 ~~~~v-~~~~~s~~g~  265 (270)
                      ..... .-+.+..||+
T Consensus       498 ~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         498 QSGIVAAPMTFELAGR  513 (560)
T ss_dssp             SSCCCSCCEEEEETTE
T ss_pred             CCCccccCEEEEECCE
Confidence            32111 1255666774

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.51  E-value=0.25  Score=35.30  Aligned_cols=211  Identities=13%  Similarity=0.129  Sum_probs=108.1

Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCCCCcc
Q 024245           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL  104 (270)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  104 (270)
                      -.+|..+.||.-+ ..+++++|+++.+.++.+...   ..|.--.|-.  + +.|+-.+. ..|.-|+++...   .|..
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis--~-~~L~lVT~-taVYHW~~~g~s---~P~k  137 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVTD-NAVYHWSMEGES---QPVK  137 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESS--S-SEEEEECS-SEEEEEESSSSC---CCEE
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecC--C-CEEEEEcC-CceEEEcccCCC---Cchh
Confidence            3467777777765 458999999999999888776   4476777765  5 66665553 469999996532   3343


Q ss_pred             ceecccc--eEEEEeeccCCccc----e---ecCC---CCceEEEeccCceeeeccCCCCC--eEecC----CCCeEEEE
Q 024245          105 TIKTNSY--HFCKLSLVKEPYAN----A---KQAN---EPKDCYEREVGETVDTDSLCDSK--DDVPA----EGPKYMAV  166 (270)
Q Consensus       105 ~~~~~~~--~~~~~~~~~~~~~~----~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~s~----~~~~~~~~  166 (270)
                      .+..+..  ....+....+....    .   ...+   +...+|..+  +.....++||..  ..+-.    ....+++.
T Consensus       138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec--cCcCccccceeeeeEEEEcCCCCCCceEEEE
Confidence            3332221  11111111111110    0   0011   112222222  233445666665  33322    22233322


Q ss_pred             e--cCCCceEEEEeCCCcce-eeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCc
Q 024245          167 A--GEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (270)
Q Consensus       167 ~--~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~  243 (270)
                      +  +...+.++|.++..... -..+..+... ..--.....+...++. .++.  .|  .+..-..-|.|++||+.+ +.
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vd-i~fppea~~DFPvamq-vs~k--yg--iiyviTK~G~i~lyDleT-gt  288 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-VFFPPEAQNDFPVAMQ-ISEK--HD--VVFLITKYGYIHLYDLET-GT  288 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEE-CCCCTTCTTCCEEEEE-EETT--TT--EEEEEETTSEEEEEETTT-CC
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEE-EECCccccCCcEEEEE-eecc--CC--EEEEEecCcEEEEEEccc-cc
Confidence            1  22346888888865321 1111100000 0000111345566666 6654  44  677777889999999999 77


Q ss_pred             ceeeeeccCCCe
Q 024245          244 PLTAMKVHLEPG  255 (270)
Q Consensus       244 ~~~~~~~~~~~v  255 (270)
                      ++..-+-..++|
T Consensus       289 ~i~~nRIs~~~i  300 (327)
T d1utca2         289 CIYMNRISGETI  300 (327)
T ss_dssp             EEEEEECCSSCE
T ss_pred             EEEEeecCCCce
Confidence            665544333333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.29  E-value=0.37  Score=36.33  Aligned_cols=97  Identities=9%  Similarity=-0.115  Sum_probs=59.6

Q ss_pred             eEec---CCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC
Q 024245          154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (270)
Q Consensus       154 ~~~s---~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d  230 (270)
                      +++.   +||+++++ ....+..|.+.|+++.+..+.++.+           .....-.+. ..++. +-. |+++++++
T Consensus        90 ~S~TdGtyDGrylFV-NDkan~RVAvIdl~~fkt~kIi~iP-----------n~~~~HG~r-~~~~p-~T~-YV~~~~e~  154 (459)
T d1fwxa2          90 MSFTEGKYDGRFLFM-NDKANTRVARVRCDVMKCDAILEIP-----------NAKGIHGLR-PQKWP-RSN-YVFCNGED  154 (459)
T ss_dssp             EEEETTEEEEEEEEE-EETTTTEEEEEETTTTEEEEEEECS-----------SCCSEEEEE-ECCSS-BCS-EEEEEECS
T ss_pred             ccccCCccceeEEEE-EcCCCceEEEEECcceeeeEEEecC-----------CCCCCceee-cccCC-CeE-EEEccCcc
Confidence            5555   48988887 5556899999999999876655421           011111111 22221 112 77776653


Q ss_pred             C------------------cEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          231 G------------------SILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       231 g------------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      .                  .+.++|..+ .+....+.. ......+.+++||+++
T Consensus       155 ~vP~pndg~~l~d~~~y~~~~t~ID~~t-m~V~~QV~V-~g~ld~~~~s~dGK~a  207 (459)
T d1fwxa2         155 ETPLVNDGTNMEDVANYVNVFTAVDADK-WEVAWQVLV-SGNLDNCDADYEGKWA  207 (459)
T ss_dssp             CEESSCSSSSTTCGG-EEEEEEEEETTT-TEEEEEEEE-SSCCCCEEECSSSSEE
T ss_pred             ccccCCCCccccchhhcceEEEEEecCC-ceEEEEeee-CCChhccccCCCCCEE
Confidence            2                  367788887 555555553 3457789999999875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.27  E-value=0.49  Score=37.29  Aligned_cols=24  Identities=8%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             ecCCCceEEEEeCCCcceeeeecc
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      .|+.||.++.+|..+|+.+.++..
T Consensus       474 ~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         474 QGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCcEEEEECCCCcEeEEEEC
Confidence            477899999999999999999884

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.062  Score=42.85  Aligned_cols=56  Identities=25%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      |.|.-+|+.+++.+.......   ++.+-..+.  .+.++++++.||.++-+|.++|+.+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~---p~~~g~lst--agglVF~Gt~dg~l~A~Da~TGe~LW  521 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL---PLWAGVLAT--AGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSCCEEE--TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC---CCccceeEE--cCCeEEEeCCCCeEEEEECCCCcEeE
Confidence            678888999998887776543   233222334  56788899999999999999998654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.89  E-value=0.46  Score=34.78  Aligned_cols=29  Identities=3%  Similarity=0.125  Sum_probs=23.0

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcc
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~  183 (270)
                      ++++|+++.++++. ...+.|++|++....
T Consensus       211 I~~s~d~~~lyVa~-t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         211 INISPDGKYVYIAE-LLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEECTTSSEEEEEE-GGGTEEEEEEECTTS
T ss_pred             eEECCCCCEEEEEe-CCCCeEEEEEeCCCc
Confidence            99999999888754 447889999987543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.80  E-value=0.7  Score=36.49  Aligned_cols=24  Identities=4%  Similarity=-0.090  Sum_probs=21.5

Q ss_pred             ecCCCceEEEEeCCCcceeeeecc
Q 024245          167 AGEQLSEVEIWDLNTAERCTRLHQ  190 (270)
Q Consensus       167 ~~~~d~~i~iwd~~~~~~~~~~~~  190 (270)
                      .|+.|+.++.+|.++|+.+.++..
T Consensus       480 ~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         480 YATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCeEEEEECCCCcEEEEEEC
Confidence            477899999999999999998874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.27  E-value=1.1  Score=32.96  Aligned_cols=69  Identities=12%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             EecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCC----
Q 024245          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----  230 (270)
Q Consensus       155 ~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~d----  230 (270)
                      ++.++|..+ +..+.....+.+||..+......-..        . . .+.... .+ ..+   ||+ +++.|+.+    
T Consensus        82 ~~~~~g~i~-v~Gg~~~~~~~~yd~~~~~w~~~~~~--------~-~-~r~~~~-~~-~~~---dG~-v~v~GG~~~~~~  144 (387)
T d1k3ia3          82 SMDGNGQIV-VTGGNDAKKTSLYDSSSDSWIPGPDM--------Q-V-ARGYQS-SA-TMS---DGR-VFTIGGSWSGGV  144 (387)
T ss_dssp             EECTTSCEE-EECSSSTTCEEEEEGGGTEEEECCCC--------S-S-CCSSCE-EE-ECT---TSC-EEEECCCCCSSS
T ss_pred             EEecCCcEE-EeecCCCcceeEecCccCcccccccc--------c-c-cccccc-ee-eec---CCc-eeeecccccccc
Confidence            466788644 33444446899999987664322110        0 1 111111 22 333   566 66666532    


Q ss_pred             --CcEEEEEcCC
Q 024245          231 --GSILVWDIRN  240 (270)
Q Consensus       231 --g~i~vwd~~~  240 (270)
                        ..+.+||..+
T Consensus       145 ~~~~v~~yd~~~  156 (387)
T d1k3ia3         145 FEKNGEVYSPSS  156 (387)
T ss_dssp             CCCCEEEEETTT
T ss_pred             ccceeeeecCCC
Confidence              3689999876

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.9  Score=31.75  Aligned_cols=219  Identities=8%  Similarity=-0.040  Sum_probs=109.0

Q ss_pred             ccccEEEEEEeCCCCEEEEe-cCCCcEEEEeCCCCc---eeEEEeecCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEE
Q 024245           17 HRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCW   91 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~w   91 (270)
                      ....+.+++|.+..+.|+-. ..++.|..-++....   ....+.... ...+.++++.+  -+..| ++-...+.|.+.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~p~glAvD~--~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDW--IHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC-CCCcceEEEee--ccceEEEEecCCCEEEeE
Confidence            34567789999866655544 455667766665321   112222121 13467888876  44444 455667789999


Q ss_pred             EccCCccCCCCccceecccceEEEEeeccCCccceec-CCCCceEEEecc--CceeeeccCC--C-CCeEecCCCCeEEE
Q 024245           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREV--GETVDTDSLC--D-SKDDVPAEGPKYMA  165 (270)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~s~~~~~~~~  165 (270)
                      ++.......    ...........+.+.......+.. .+....++....  ..........  . ..+++.+.++.++.
T Consensus       105 ~~~g~~~~~----~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         105 DTKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             ETTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             ecCCceEEE----EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEE
Confidence            987654321    111111222223333222111111 122223332222  1111111111  1 11888888888877


Q ss_pred             EecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcce
Q 024245          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (270)
Q Consensus       166 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~  245 (270)
                      + -...+.|...|+........+..        ..  .......++ +.    ++. ++++-..++.|+..+..+ +...
T Consensus       181 ~-d~~~~~I~~~~~dG~~~~~~~~~--------~~--~~~~p~~la-v~----~~~-ly~td~~~~~I~~~~~~~-g~~~  242 (266)
T d1ijqa1         181 V-DSKLHSISSIDVNGGNRKTILED--------EK--RLAHPFSLA-VF----EDK-VFWTDIINEAIFSANRLT-GSDV  242 (266)
T ss_dssp             E-ETTTTEEEEEETTSCSCEEEEEC--------TT--TTSSEEEEE-EE----TTE-EEEEETTTTEEEEEETTT-CCCC
T ss_pred             e-cCCcCEEEEEECCCCCEEEEEeC--------CC--cccccEEEE-EE----CCE-EEEEECCCCeEEEEECCC-Ccce
Confidence            4 34468899999864443332221        10  112234444 33    233 666666788999999887 6666


Q ss_pred             eeeeccCCCeeEEEe
Q 024245          246 TAMKVHLEPGLECSM  260 (270)
Q Consensus       246 ~~~~~~~~~v~~~~~  260 (270)
                      ..+......+.+|..
T Consensus       243 ~~~~~~~~~p~~i~v  257 (266)
T d1ijqa1         243 NLLAENLLSPEDMVL  257 (266)
T ss_dssp             EEEECSCSCCCCEEE
T ss_pred             EEEEcCCCCceEEEE
Confidence            666654444555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.99  Score=31.54  Aligned_cols=206  Identities=10%  Similarity=-0.086  Sum_probs=100.2

Q ss_pred             cEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEE-eCCCcEEEEEccCCccCCCCccceecccceEEEEeec
Q 024245           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV  119 (270)
Q Consensus        41 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (270)
                      .|+..++.+.+....+. ..  ..+.++.|.+  ..+.|+-. ..++.|...++......................++++
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~--~~~~~id~d~--~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NL--RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SC--SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             eEEEEECCCCcceeeeC-CC--CceEEEEEEe--CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            58888988655444433 33  4478999998  66666644 4566676666653221110011111111222234444


Q ss_pred             cCCccceecCCCC--ceEEEeccCceeeeccCC-CCC--eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCC
Q 024245          120 KEPYANAKQANEP--KDCYEREVGETVDTDSLC-DSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG  194 (270)
Q Consensus       120 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (270)
                      +.....+......  +...++............ ...  +++.|...+++.+..+..+.|.-.++.... ...+..    
T Consensus        86 ~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~----  160 (266)
T d1ijqa1          86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT----  160 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC----
T ss_pred             eccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccc----
Confidence            4333333332222  233333333222211111 111  888887767776554445667777776333 333321    


Q ss_pred             CCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc--CCCeeEEEeecCCCcee
Q 024245          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LEPGLECSMWRNPITMS  268 (270)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~ls  268 (270)
                          .   .......++ +.+.  .++ +.++-...+.|...|+.. ..........  .....+|++..+..|.+
T Consensus       161 ----~---~~~~p~gl~-iD~~--~~~-lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~~p~~lav~~~~ly~t  224 (266)
T d1ijqa1         161 ----E---NIQWPNGIT-LDLL--SGR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWT  224 (266)
T ss_dssp             ----S---SCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred             ----c---ccceeeEEE-eecc--ccE-EEEecCCcCEEEEEECCC-CCEEEEEeCCCcccccEEEEEECCEEEEE
Confidence                0   112345565 6664  344 566667778899999875 3332222222  23456677765544444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.58  E-value=0.85  Score=34.43  Aligned_cols=96  Identities=6%  Similarity=0.016  Sum_probs=56.1

Q ss_pred             eEecCCCCeEEEEe---cCCCceEEEEeCCCcceeee-eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEec-
Q 024245          154 DDVPAEGPKYMAVA---GEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-  228 (270)
Q Consensus       154 ~~~s~~~~~~~~~~---~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~-  228 (270)
                      .++||++++++++.   |++.-.|+++|+.+++.+.. +..              .....+. |.++   ++.++.+.- 
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--------------~~~~~~~-W~~D---~~~~~Y~~~~  191 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------------VKFSCMA-WTHD---GKGMFYNAYP  191 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------------ECSCCEE-ECTT---SSEEEEEECC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--------------ccccceE-EcCC---CCEEEEEEec
Confidence            46889998776532   44456799999999986642 221              0112344 8875   442444331 


Q ss_pred             --------------CCCcEEEEEcCCCCc-ceeeeecc--CCCeeEEEeecCCCce
Q 024245          229 --------------EDGSILVWDIRNPGI-PLTAMKVH--LEPGLECSMWRNPITM  267 (270)
Q Consensus       229 --------------~dg~i~vwd~~~~~~-~~~~~~~~--~~~v~~~~~s~~g~~l  267 (270)
                                    ....|..|.+.++.. ....+...  ...+..+..++|++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l  247 (430)
T d1qfma1         192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (430)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCccee
Confidence                          123688888887322 22233322  2345677788898875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.83  E-value=0.25  Score=39.22  Aligned_cols=56  Identities=21%  Similarity=0.196  Sum_probs=41.4

Q ss_pred             CcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEccCCccCC
Q 024245           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (270)
Q Consensus        40 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  100 (270)
                      |.|.-||+.+++.+..+.....   ...=..+-  .+.++++++.||.++.+|.++++.+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p---~~gg~lst--agglVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP---WNGGTLTT--AGNVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEE--TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC---CCCceEEE--cCCEEEEECCCCeEEEEECCCCcEeE
Confidence            4688899999998887765432   22212233  56888899999999999999998654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.73  E-value=1.9  Score=32.35  Aligned_cols=77  Identities=4%  Similarity=-0.028  Sum_probs=49.2

Q ss_pred             ccccEEEEEEeCCCCEEEEe-----cCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeCC------
Q 024245           17 HRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------   85 (270)
Q Consensus        17 h~~~v~~~~~s~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------   85 (270)
                      +.-.+...++||+++++|-+     +.--.|++.|+.+++.+......   .....++|.+  +++.|+-...+      
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~--D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcC--CCCEEEEEEeccccCcc
Confidence            33445677889999987742     33347999999999876432211   1135688999  88877643322      


Q ss_pred             ----------CcEEEEEccCCcc
Q 024245           86 ----------GTVKCWDIENGGL   98 (270)
Q Consensus        86 ----------~~i~~wd~~~~~~   98 (270)
                                ..|..+.+.+...
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~  220 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQS  220 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGG
T ss_pred             cccccccCCcceEEEEECCCCcc
Confidence                      2577777766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.69  E-value=2.5  Score=33.46  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEEeecCCCcceEEEEEeeCCCCCEEEEEeC------CCcEEEEEccCCccCC
Q 024245           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGLSS  100 (270)
Q Consensus        31 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~  100 (270)
                      .+++.++.|+.|.-.|.++++.+..+....... -..+.-.|.--++.++.+..      .|.|+-+|+++++++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~-~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKV-GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceecccccccccc-ccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence            468889999999999999999988775322110 01111111111255665543      4889999999998654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.99  E-value=2  Score=31.18  Aligned_cols=16  Identities=0%  Similarity=-0.124  Sum_probs=13.0

Q ss_pred             CCCeeEEEeecCCCce
Q 024245          252 LEPGLECSMWRNPITM  267 (270)
Q Consensus       252 ~~~v~~~~~s~~g~~l  267 (270)
                      -...+.|+++||+++|
T Consensus       205 l~~pNGI~~s~d~~~l  220 (340)
T d1v04a_         205 FDFANGINISPDGKYV  220 (340)
T ss_dssp             ESSEEEEEECTTSSEE
T ss_pred             CCccceeEECCCCCEE
Confidence            4568999999998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.77  E-value=3.1  Score=32.88  Aligned_cols=75  Identities=19%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             ceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeecc
Q 024245          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (270)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  251 (270)
                      |.|.-||+.+++.+.+...       +  .+..+..+..        .|. +++.|+.||.++.+|.++ ++.+.++.-.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-------~--~~~~gg~lsT--------agg-lVF~G~~Dg~l~A~Da~T-Ge~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-------R--FAVWGGTMAT--------AGD-LVFYGTLDGYLKARDSDT-GDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-------S--SCCCSBCEEE--------TTT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCC-------C--CCCccceeEe--------cCC-EEEEECCCCeEEEEECCC-CcEeeEEECC
Confidence            6889999999998776652       1  1112222221        233 777899999999999999 8888888643


Q ss_pred             CCC-eeEEEeecCCC
Q 024245          252 LEP-GLECSMWRNPI  265 (270)
Q Consensus       252 ~~~-v~~~~~s~~g~  265 (270)
                      ... -.=+.|.-||+
T Consensus       514 ~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         514 SGAIGYPMTYTHKGT  528 (596)
T ss_dssp             SCCCSCCEEEEETTE
T ss_pred             CCcccCCeEEEECCE
Confidence            211 11244556664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.61  E-value=3  Score=29.68  Aligned_cols=91  Identities=7%  Similarity=0.079  Sum_probs=58.1

Q ss_pred             eEecCCCCeEEEEecCCCceEEEEeCCCcceeeeeccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcE
Q 024245          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (270)
Q Consensus       154 ~~~s~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i  233 (270)
                      .-.+|..+-+.+ -+  ..++.+||+++.+.++.+...            + .+.--. |-.   +.  .|+-.. +..|
T Consensus        68 AIMhP~~~IiAL-ra--g~~LQiFnletK~klks~~~~------------e-~VvfWk-Wis---~~--~L~lVT-~taV  124 (327)
T d1utca2          68 AIMNPASKVIAL-KA--GKTLQIFNIEMKSKMKAHTMT------------D-DVTFWK-WIS---LN--TVALVT-DNAV  124 (327)
T ss_dssp             EEECSSSSEEEE-EE--TTEEEEEETTTTEEEEEEECS------------S-CCCEEE-ESS---SS--EEEEEC-SSEE
T ss_pred             hhcCCCCcEEEE-ec--CCeEEEEehhHhhhhceEEcC------------C-CcEEEE-ecC---CC--EEEEEc-CCce
Confidence            446788864444 44  368999999999988877731            1 222222 553   22  444443 3479


Q ss_pred             EEEEcCCCCcceeeeeccC----CCeeEEEeecCCCce
Q 024245          234 LVWDIRNPGIPLTAMKVHL----EPGLECSMWRNPITM  267 (270)
Q Consensus       234 ~vwd~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l  267 (270)
                      +-|++.....|...+..|.    ..|.+-..+++.+.+
T Consensus       125 YHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~  162 (327)
T d1utca2         125 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWL  162 (327)
T ss_dssp             EEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEE
T ss_pred             EEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEE
Confidence            9999976567888887765    356666667776654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.66  E-value=5.8  Score=29.92  Aligned_cols=55  Identities=9%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             cccEEEEEEeCCCCEEEEecCCCcEEEEeCCCCceeEEEe------ecCCCcceEEEEEee
Q 024245           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------VHSAAHGIVSVATGP   72 (270)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~~~v~~~~~~~   72 (270)
                      -..-++|+|.|+|+++++--.+|.|++++..+++......      ....+.....|+++|
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            3567899999999998887667999999987765433221      112235688999998

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.84  E-value=5  Score=27.67  Aligned_cols=203  Identities=5%  Similarity=-0.090  Sum_probs=97.7

Q ss_pred             CcEEEEeCCCCc-----eeEEEeecCCCcceEEEEEeeCCCCCEEEE-EeCCCcEEEEEccCCccCCCCccceecccceE
Q 024245           40 GELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF  113 (270)
Q Consensus        40 g~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  113 (270)
                      +.|+-.+++...     ....+....  ..+.+|+|.+  ..+.|+- -..++.|...+++......    .........
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~--~~~~~ld~D~--~~~~iywsd~~~~~I~~~~l~g~~~~~----v~~~~~~~p   81 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPA--KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT----IIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEE--EEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE----EECTTCCCE
T ss_pred             CeEEEEECCCccccccccccccccCC--CcEEEEEEEe--CCCEEEEEECCCCeEEEEEcccCCcEE----EEEeccccc
Confidence            457666665432     112233333  3478899988  5566654 4566788888887654321    111222233


Q ss_pred             EEEeeccCCccceecCCCCce--EEEeccCceeeeccCCCCC---eEecCCCCeEEEEecCC-CceEEEEeCCCcceeee
Q 024245          114 CKLSLVKEPYANAKQANEPKD--CYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQ-LSEVEIWDLNTAERCTR  187 (270)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~  187 (270)
                      ..+++++.....+........  ..++...........+...   +++.|...+++.+.... ...|.--++........
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            345555443333333322222  2333322211111111111   88888887777654332 23344445543322222


Q ss_pred             eccCcCCCCCCcccCCCceeeeeeecCCCCCCCceEEEEecCCCcEEEEEcCCCCcceeeeeccCCCeeEEEeecCCCce
Q 024245          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPGLECSMWRNPITM  267 (270)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  267 (270)
                      ...            .......++ +.+.  +++ +.++-...+.|...|+.. ......+.+. ....+|++..+..|.
T Consensus       162 ~~~------------~~~~P~gla-iD~~--~~~-lYw~d~~~~~I~~~~~~g-~~~~~v~~~~-~~P~~lav~~~~lYw  223 (263)
T d1npea_         162 AQD------------NLGLPNGLT-FDAF--SSQ-LCWVDAGTHRAECLNPAQ-PGRRKVLEGL-QYPFAVTSYGKNLYY  223 (263)
T ss_dssp             ECT------------TCSCEEEEE-EETT--TTE-EEEEETTTTEEEEEETTE-EEEEEEEECC-CSEEEEEEETTEEEE
T ss_pred             eee------------cccccceEE-Eeec--CcE-EEEEeCCCCEEEEEECCC-CCeEEEECCC-CCcEEEEEECCEEEE
Confidence            221            122345565 7664  344 555656778899998875 3333334432 234577776443443


Q ss_pred             e
Q 024245          268 S  268 (270)
Q Consensus       268 s  268 (270)
                      +
T Consensus       224 t  224 (263)
T d1npea_         224 T  224 (263)
T ss_dssp             E
T ss_pred             E
Confidence            3