Citrus Sinensis ID: 024251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
cccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEcccHHHHHHHHHccccEEEEccccHHHHHccccEEEEEccccccccEEcccccEEEEEEEEccHHHHHHHHHHccccccEEEEccccccccHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccccccEEcEEEEEEEEEEcccccEEEEEcccEEEEEEcccccccccccccEEcccccEEEccc
cHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccEEEEEcccHHHHHHHHHccccEEEEcccHHHHHHHHcccEEEEEEEccccHHccccccEEEEEEEEccHHHHHHHHHHcccccEEEEEEccccEccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEcccccEEEEcccEEEEEEccccccccccccccEEccccEEEEEcc
MALLLSSsfvsstqlpfstfntdkwntgrvnknsYCFTMCsvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENqqlaidwstialldplfikegevydsgdrrvgsiievstpqelqqlqpadgqaenividlpdwqvipaenivasfqgsgktvfaISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRvdvagmgdRVCVDLCRLFLVHSeclesnyiasrpfrvnavsfnalsfa
malllsssfvsstqlpfstfntdkwntgrvNKNSYCFTMCSvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLEsnyiasrpfrvNAVSFNALSFA
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCsvsnssssKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
**************LPFSTFNTDKWNTGRVNKNSYCFTMC************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV***************AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNA****
**************L**************************************WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD*******LLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSV*********RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
****LSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCRLFLVHSECLESNYIASRPFRVNAVSFNALSFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
A2SU08 345 3-dehydroquinate synthase yes no 0.755 0.591 0.304 2e-24
Q12UJ7 379 3-dehydroquinate synthase yes no 0.444 0.316 0.409 1e-21
O26680 374 3-dehydroquinate synthase yes no 0.755 0.545 0.301 2e-21
Q2NI00 359 3-dehydroquinate synthase yes no 0.774 0.582 0.279 3e-21
A0B6K6 362 3-dehydroquinate synthase yes no 0.762 0.569 0.284 2e-20
Q0W131 374 3-dehydroquinate synthase yes no 0.470 0.339 0.383 2e-20
A4G0J1 361 3-dehydroquinate synthase yes no 0.477 0.357 0.367 1e-19
O67751 331 3-dehydroquinate synthase yes no 0.707 0.577 0.280 4e-19
A9A8T5 361 3-dehydroquinate synthase yes no 0.477 0.357 0.360 8e-19
Q58646 361 3-dehydroquinate synthase yes no 0.485 0.362 0.361 1e-18
>sp|A2SU08|DHQS_METLZ 3-dehydroquinate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=Mlab_1653 PE=3 SV=1 Back     alignment and function desciption
 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 26/230 (11%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           +   +  + E K ++ +A+E G+   +   E++ L       A+L      +G+      
Sbjct: 11  RADHLQTYDERKAIVASALESGYTHIILRPEDEALRHLGRYTAIL-----ADGKNLMYSG 65

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
            R+G ++ ++  +E+++         N++I   +W+VIP EN+++ FQ +  +V+   KT
Sbjct: 66  ERIGVLLNLTGAEEMEEAYSLKNAVPNLIISPENWKVIPLENLISRFQNAETSVYICVKT 125

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG-RNEVSNLLSLMKATVTRVDVAG 227
           P EA++  + +E G  GIV+   D  A LA    F G RN+   ++ L  A VT++    
Sbjct: 126 PEEARLAFQTMEVGCDGIVI-TPDGPADLAA---FSGIRNDEYPIVDLETAVVTKISTLS 181

Query: 228 MGDRVCVDLCR----------------LFLVHSECLESNYIASRPFRVNA 261
           +GDRVC+D C                 LFLV SE  ES Y+ SRPFRVNA
Sbjct: 182 LGDRVCIDTCSLLERGEGMLIGSQSSCLFLVCSESFESEYVNSRPFRVNA 231
Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis.
Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q12UJ7|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2000 PE=3 SV=2 Back     alignment and function description
>sp|O26680|DHQS_METTH 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2 Back     alignment and function description
>sp|Q2NI00|DHQS_METST 3-dehydroquinate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0090 PE=3 SV=1 Back     alignment and function description
>sp|A0B6K6|DHQS_METTP 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_0539 PE=3 SV=2 Back     alignment and function description
>sp|Q0W131|DHQS_UNCMA 3-dehydroquinate synthase OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_03530 PE=3 SV=1 Back     alignment and function description
>sp|A4G0J1|DHQS_METM5 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1678 PE=3 SV=1 Back     alignment and function description
>sp|O67751|DHQSH_AQUAE 3-dehydroquinate synthase homolog OS=Aquifex aeolicus (strain VF5) GN=aq_1922 PE=3 SV=1 Back     alignment and function description
>sp|A9A8T5|DHQS_METM6 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0943 PE=3 SV=1 Back     alignment and function description
>sp|Q58646|DHQS_METJA 3-dehydroquinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1249 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
224140959345 predicted protein [Populus trichocarpa] 0.807 0.631 0.722 5e-93
296082881 998 unnamed protein product [Vitis vinifera] 0.8 0.216 0.676 7e-88
359488897368 PREDICTED: 3-dehydroquinate synthase-lik 0.8 0.586 0.676 6e-87
255552890 419 conserved hypothetical protein [Ricinus 0.977 0.630 0.566 7e-85
449459466 423 PREDICTED: 3-dehydroquinate synthase-lik 0.8 0.510 0.655 1e-83
356572434 442 PREDICTED: 3-dehydroquinate synthase-lik 0.855 0.522 0.643 3e-80
297818494 426 hypothetical protein ARALYDRAFT_322953 [ 0.807 0.511 0.632 1e-78
79313976 444 uncharacterized protein [Arabidopsis tha 0.807 0.490 0.628 4e-78
30689333 422 uncharacterized protein [Arabidopsis tha 0.807 0.516 0.628 5e-78
357439097 392 3-dehydroquinate synthase [Medicago trun 0.977 0.673 0.561 2e-77
>gi|224140959|ref|XP_002323844.1| predicted protein [Populus trichocarpa] gi|222866846|gb|EEF03977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 169/234 (72%), Positives = 192/234 (82%), Gaps = 16/234 (6%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           K KRVWIWTESKQVMT AVERGWNTF+FLS ++QLAIDWS+ + ++PLFI+EGEV D  +
Sbjct: 1   KSKRVWIWTESKQVMTTAVERGWNTFIFLSNHRQLAIDWSSFSFINPLFIEEGEVLDGEN 60

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
           +RV +I EVSTPQELQQLQP +GQAEN++I+L DWQ+IPAENIVA+FQGS KTV AISKT
Sbjct: 61  KRVATIFEVSTPQELQQLQPENGQAENVIINLLDWQIIPAENIVAAFQGSQKTVLAISKT 120

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
            SEAQIFLEALE GLGG+VLKVEDV+AV+ LKEY D RNE +NLLSL KAT+TRV VAGM
Sbjct: 121 HSEAQIFLEALEHGLGGVVLKVEDVEAVIKLKEYCDRRNEATNLLSLTKATITRVQVAGM 180

Query: 229 GDRVCVDLCR----------------LFLVHSECLESNYIASRPFRVNAVSFNA 266
           GDRVCVDLC                 LFLVHSECLESNYIASRPFRVNA   +A
Sbjct: 181 GDRVCVDLCSLMKPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHA 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082881|emb|CBI22182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488897|ref|XP_002282990.2| PREDICTED: 3-dehydroquinate synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552890|ref|XP_002517488.1| conserved hypothetical protein [Ricinus communis] gi|223543499|gb|EEF45030.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449459466|ref|XP_004147467.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449520920|ref|XP_004167480.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572434|ref|XP_003554373.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|297818494|ref|XP_002877130.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] gi|297322968|gb|EFH53389.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79313976|ref|NP_001030791.1| uncharacterized protein [Arabidopsis thaliana] gi|222424331|dbj|BAH20122.1| AT3G28760 [Arabidopsis thaliana] gi|332643967|gb|AEE77488.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30689333|ref|NP_189518.2| uncharacterized protein [Arabidopsis thaliana] gi|27754381|gb|AAO22639.1| unknown protein [Arabidopsis thaliana] gi|28973463|gb|AAO64056.1| unknown protein [Arabidopsis thaliana] gi|332643966|gb|AEE77487.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357439097|ref|XP_003589825.1| 3-dehydroquinate synthase [Medicago truncatula] gi|355478873|gb|AES60076.1| 3-dehydroquinate synthase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2098428 444 AT3G28760 [Arabidopsis thalian 0.788 0.479 0.637 6.1e-71
TAIR|locus:2098428 AT3G28760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 146/229 (63%), Positives = 174/229 (75%)

Query:    49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:   109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   229 GDRVCVDLCRL----------------FLVHSECLESNYIASRPFRVNA 261
             GDRVCVDLC L                FLVHSECLESNYI SRPFRVNA
Sbjct:   271 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNA 319


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       262   0.00091  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  200 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  21.50u 0.13s 21.63t   Elapsed:  00:00:00
  Total cpu time:  21.50u 0.13s 21.63t   Elapsed:  00:00:01
  Start:  Thu May  9 20:25:16 2013   End:  Thu May  9 20:25:17 2013
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.999.1
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
•     • 0.770
gw1.XIV.2747.1
hypothetical protein (337 aa)
•     • 0.708
gw1.VIII.57.1
annotation not avaliable (321 aa)
•     • 0.563
gw1.XVI.3177.1
hypothetical protein (66 aa)
•       0.501
PDTp
arogenate/prephenate dehydratase (EC-4.2.1.91) (302 aa)
•  •    0.480
fgenesh4_pg.C_scaffold_70000157
hypothetical protein (223 aa)
•    •  0.465
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
•       0.460
CS1
chorismate synthase (EC-4.2.3.5) (438 aa)
•       0.455
gw1.2627.7.1
Predicted protein (172 aa)
•       0.452

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
pfam01959 347 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 5e-60
PRK02290 344 PRK02290, PRK02290, 3-dehydroquinate synthase; Pro 1e-37
COG1465 376 COG1465, COG1465, Predicted alternative 3-dehydroq 8e-32
>gnl|CDD|216810 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
 Score =  193 bits (492), Expect = 5e-60
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 25/234 (10%)

Query: 51  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWS--TIALLDPLFIKEGEV 103
           K+VW+     W E K+ +T A+E G +  +   E+ +   +    T+A      + + E 
Sbjct: 1   KKVWLKADGPWDERKERITTALESGVDAVLVDEEDVERVRELGRITVAADGTDDLPDLET 60

Query: 104 YDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF 163
                + VG+ +E+   ++ +    A  +A+ ++++  DW +IP EN++A  QGS   V 
Sbjct: 61  LKESGKDVGAYVEILDKEDEEFAAEAAKEADYVIVEGRDWTIIPLENLIARLQGSETKVI 120

Query: 164 AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223
           A+ ++  EA++ LE LE+G+ G++L  +D   + A+    + ++  S  L L+ ATVT V
Sbjct: 121 AVVRSAEEAKLALETLEKGVDGVLLDSDDPNEIKAIVAVVEEKSSES--LDLVPATVTEV 178

Query: 224 DVAGMGDRVCVDLCRL----------------FLVHSECLESNYIASRPFRVNA 261
           +  GMGDRVCVD C L                FLVHSE LES Y+ASRPFRVNA
Sbjct: 179 EPVGMGDRVCVDTCSLMEDGEGMLVGSSSRGMFLVHSETLESPYVASRPFRVNA 232

6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyzes the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 347
>gnl|CDD|235025 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224382 COG1465, COG1465, Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
PF01959 354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 100.0
PRK02290 344 3-dehydroquinate synthase; Provisional 100.0
COG1465 376 Predicted alternative 3-dehydroquinate synthase [A 100.0
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 94.07
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 93.97
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 93.75
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 93.73
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 93.65
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 92.54
PRK05826465 pyruvate kinase; Provisional 92.47
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 91.49
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 90.59
PTZ00300454 pyruvate kinase; Provisional 90.3
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 90.02
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 89.86
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 89.73
PF02662124 FlpD: Methyl-viologen-reducing hydrogenase, delta 89.56
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 89.35
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 88.97
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 88.19
PTZ00066513 pyruvate kinase; Provisional 87.76
TIGR01370315 cysRS possible cysteinyl-tRNA synthetase, Methanoc 87.01
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 86.37
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 86.2
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 85.57
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 85.24
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 84.94
PF00072112 Response_reg: Response regulator receiver domain; 84.62
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 84.11
PLN02591250 tryptophan synthase 83.79
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 83.46
TIGR03151307 enACPred_II putative enoyl-(acyl-carrier-protein) 83.02
PLN02762509 pyruvate kinase complex alpha subunit 82.96
PF03060330 NMO: Nitronate monooxygenase; InterPro: IPR004136 82.74
PRK06559290 nicotinate-nucleotide pyrophosphorylase; Provision 82.55
PRK06106281 nicotinate-nucleotide pyrophosphorylase; Provision 82.52
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 82.08
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 81.74
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 81.21
PRK06096284 molybdenum transport protein ModD; Provisional 81.18
PLN02623581 pyruvate kinase 81.12
PRK07896289 nicotinate-nucleotide pyrophosphorylase; Provision 80.42
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 80.02
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-76  Score=559.20  Aligned_cols=218  Identities=37%  Similarity=0.626  Sum_probs=203.1

Q ss_pred             cEEEE-----EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeee---cCCcc------ccCCCCeEEEEEE
Q 024251           51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE  116 (270)
Q Consensus        51 K~vWi-----w~~~Ke~vT~ALEsG~d~~vv~~~~~e~a~~l~~i~~i~~l~~---~~g~~------~~~~gk~v~~~v~  116 (270)
                      |++||     |+++|++||+|||+|||+|++++++.+++++|+++.++.+..-   +++..      ++..|+.+|.+++
T Consensus         1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~   80 (354)
T PF01959_consen    1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE   80 (354)
T ss_pred             CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence            78999     8889999999999999999999999999999999999885332   22332      3578999999999


Q ss_pred             ecChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeEEEecCCHHHH
Q 024251          117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV  196 (270)
Q Consensus       117 V~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGVvl~~~d~~~v  196 (270)
                      |.++++++.++.+.+.++|+|++++||||||||||||++|+++++|++.++|++||+++|++||+|+|||+|+|+|+++|
T Consensus        81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei  160 (354)
T PF01959_consen   81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI  160 (354)
T ss_pred             ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence            99999999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccceeeeEEEEEEEEeccccceeEEeccc----------------eeEEeeccccCCCCCCCCceec
Q 024251          197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCR----------------LFLVHSECLESNYIASRPFRVN  260 (270)
Q Consensus       197 ~~l~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcS----------------mFLVhsEt~e~pYva~RPFRVN  260 (270)
                      +++++++..  .++++++|++|+||+|+|+||||||||||||                ||||||||++||||++||||||
T Consensus       161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN  238 (354)
T PF01959_consen  161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN  238 (354)
T ss_pred             HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence            999999865  3677899999999999999999999999999                9999999999999999999999


Q ss_pred             cCcceeeccC
Q 024251          261 AVSFNALSFA  270 (270)
Q Consensus       261 AGaVHaYv~a  270 (270)
                      |||||||++.
T Consensus       239 AGaVHaYv~~  248 (354)
T PF01959_consen  239 AGAVHAYVLM  248 (354)
T ss_pred             cCcceeEEEc
Confidence            9999999973

6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 40/262 (15%), Positives = 80/262 (30%), Gaps = 96/262 (36%)

Query: 54  WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS 113
           ++ +    + T   +    T +++ +  +L   ++   +     +           R+  
Sbjct: 93  FLMS---PIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVS----------RLQP 136

Query: 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS------- 166
            +++   Q L +L+PA    +N++ID                 GSGKT  A+        
Sbjct: 137 YLKLR--QALLELRPA----KNVLID--------------GVLGSGKTWVALDVCLSYKV 176

Query: 167 KTPSEAQIF-------------LEALEQ--------------GLGGIVLKVEDVKAVLAL 199
           +   + +IF             LE L++                  I L++  ++A   L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--EL 234

Query: 200 KEYFDGRNEVSNLLSL--------MKA--------------TVTRVDVAGMGDRVCVDLC 237
           +     +   + LL L          A               VT    A     + +D  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 238 RLFLVHSECLE--SNYIASRPF 257
            + L   E       Y+  RP 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQ 316

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 95.2
3luf_A259 Two-component system response regulator/ggdef doma 93.86
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 93.84
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 93.63
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 93.58
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 93.01
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 91.31
1izc_A 339 Macrophomate synthase intermolecular diels-aldera; 90.58
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 90.58
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 90.54
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 90.3
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 90.18
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 88.53
1sgj_A 284 Citrate lyase, beta subunit; trimer, TIM barrel, s 88.26
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 88.06
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 87.5
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 87.49
3grc_A140 Sensor protein, kinase; protein structure initiati 87.44
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 87.39
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 87.14
3hdg_A137 Uncharacterized protein; two-component sensor acti 86.92
3paj_A320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 86.8
1e0t_A 470 Pyruvate kinase, PK; phosphotransferase, glycolysi 86.57
3jte_A143 Response regulator receiver protein; structural ge 86.19
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 85.54
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 85.52
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 85.5
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 84.6
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 84.58
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 84.54
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 84.28
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 84.14
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 83.63
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 83.3
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 82.96
3f6c_A134 Positive transcription regulator EVGA; structural 82.82
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 82.67
4drs_A526 Pyruvate kinase; glycolysis, allosteric EN transfe 82.55
1sgj_A284 Citrate lyase, beta subunit; trimer, TIM barrel, s 82.51
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 82.46
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 82.45
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 82.17
3tqv_A287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 82.16
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 82.08
3q9s_A249 DNA-binding response regulator; DNA binding protei 82.02
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 81.97
3c2e_A294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 81.92
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 81.83
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 81.78
3l0g_A300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 81.58
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 81.43
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 81.32
3eqz_A135 Response regulator; structural genomics, unknown f 81.22
2qr3_A140 Two-component system response regulator; structura 80.93
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 80.89
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 80.67
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 80.66
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 80.63
1ujp_A271 Tryptophan synthase alpha chain; riken structural 80.56
1qap_A296 Quinolinic acid phosphoribosyltransferase; glycosy 80.55
3gt7_A154 Sensor protein; structural genomics, signal receiv 80.54
1o4u_A285 Type II quinolic acid phosphoribosyltransferase; s 80.51
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 80.29
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 80.03
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 80.01
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
Probab=95.20  E-value=0.039  Score=49.25  Aligned_cols=93  Identities=13%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             CCeEEEEEEe-cChhhhhhhccccCCCceEEEeCCCCeeechhhhhhcc---cCCCceEEEEcCCHHHHHHHHHHHhccc
Q 024251          108 DRRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF---QGSGKTVFAISKTPSEAQIFLEALEQGL  183 (270)
Q Consensus       108 gk~v~~~v~V-~~~ed~e~~~~~~~~~~~vvv~~~DWtiIPlENlIA~~---q~~~~~i~a~v~~~~eA~~~l~~LE~G~  183 (270)
                      ...+|.++.+ .+++-++.+...  ..|+|++|..| .+.|.+.+.+.+   +..+..++..++..+. .....+|+.|+
T Consensus        14 ~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~   89 (261)
T 3qz6_A           14 KSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGA   89 (261)
T ss_dssp             CCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTC
T ss_pred             CCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCC
Confidence            3567888888 888887777653  58999998887 466666555444   3345689999988755 46677889999


Q ss_pred             CeEEEe-cCCHHHHHHHHHhhc
Q 024251          184 GGIVLK-VEDVKAVLALKEYFD  204 (270)
Q Consensus       184 DGVvl~-~~d~~~v~~l~~~~~  204 (270)
                      |||+++ .+++++++++.+.+.
T Consensus        90 ~gI~lP~v~saed~~~~~~~~~  111 (261)
T 3qz6_A           90 EGFMIPGVQSAETMRETVRLAK  111 (261)
T ss_dssp             CEEEETTCCSHHHHHHHHHHHS
T ss_pred             CEEEECCcCCHHHHHHHHHHhc
Confidence            999997 578999999888763
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 93.95
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 93.05
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 91.91
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 91.33
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 91.27
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 90.59
d1o4ua1170 Quinolinic acid phosphoribosyltransferase (Nicotin 89.42
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 89.18
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 88.84
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 87.51
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 84.22
d1o1za_226 Hypothetical protein TM1621 {Thermotoga maritima [ 82.96
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 81.15
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 80.92
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.12  Score=44.01  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             CeEEEEEEecChhhhhhhccccCCCceEEEeCC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHHhcccCeE
Q 024251          109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI  186 (270)
Q Consensus       109 k~v~~~v~V~~~ed~e~~~~~~~~~~~vvv~~~--DWtiIPlENlIA~~q~~~~~i~a~v~~~~eA~~~l~~LE~G~DGV  186 (270)
                      ..+|....+.++.-.|.++.  ...|+++|+..  .+..==+++++.+++..+...+..+.+. +......+|+.|++||
T Consensus        16 ~~~G~~~~~~~p~~~ei~a~--~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~-~~~~i~~~LD~Ga~GI   92 (253)
T d1dxea_          16 VQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTN-EPVIIKRLLDIGFYNF   92 (253)
T ss_dssp             CEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSS-CHHHHHHHHHTTCCEE
T ss_pred             CEEEEEecCCCHHHHHHHHc--CCCCEEEEecccCCCChhHHHHHHHHHhccCCCceecCCCC-CHHHHHHHHhcCccEE
Confidence            45688888888887666664  34899999886  2333456999999999999999999875 4467788999999999


Q ss_pred             EEec-CCHHHHHHHHHhh
Q 024251          187 VLKV-EDVKAVLALKEYF  203 (270)
Q Consensus       187 vl~~-~d~~~v~~l~~~~  203 (270)
                      +++- +++++++++.+..
T Consensus        93 ivP~v~s~eea~~~v~~~  110 (253)
T d1dxea_          93 LIPFVETKEEAELAVAST  110 (253)
T ss_dssp             EESCCCSHHHHHHHHHTT
T ss_pred             EecccCCHHHHHHHHHhh
Confidence            9974 5789888887765
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure