Citrus Sinensis ID: 024252
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 270 | 2.2.26 [Sep-21-2011] | |||||||
| Q43317 | 325 | Cysteine synthase OS=Citr | N/A | no | 1.0 | 0.830 | 0.9 | 1e-127 | |
| Q00834 | 325 | Cysteine synthase OS=Spin | N/A | no | 0.996 | 0.827 | 0.873 | 1e-125 | |
| P80608 | 325 | Cysteine synthase OS=Zea | N/A | no | 1.0 | 0.830 | 0.851 | 1e-122 | |
| O81154 | 325 | Cysteine synthase OS=Sola | N/A | no | 1.0 | 0.830 | 0.833 | 1e-122 | |
| P38076 | 325 | Cysteine synthase OS=Trit | N/A | no | 0.996 | 0.827 | 0.836 | 1e-120 | |
| Q9XEA6 | 321 | Cysteine synthase OS=Oryz | yes | no | 0.996 | 0.838 | 0.832 | 1e-120 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | no | no | 1.0 | 0.830 | 0.833 | 1e-119 | |
| O23733 | 322 | Cysteine synthase OS=Bras | N/A | no | 0.996 | 0.835 | 0.817 | 1e-118 | |
| P47998 | 322 | Cysteine synthase OS=Arab | yes | no | 0.996 | 0.835 | 0.810 | 1e-117 | |
| O23735 | 324 | Cysteine synthase OS=Bras | N/A | no | 0.996 | 0.830 | 0.814 | 1e-116 |
| >sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/270 (90%), Positives = 258/270 (95%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AF
Sbjct: 56 MISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+G+GGK
Sbjct: 116 GAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
IDALVSGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 IDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDVNLLDE +Q+SSEE+IETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 236 GVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLS+VLFESVK+E E+MVFEP
Sbjct: 296 AVFPSFGERYLSTVLFESVKRETENMVFEP 325
|
Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine. Citrullus lanatus (taxid: 3654) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/269 (87%), Positives = 255/269 (94%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AF
Sbjct: 56 MITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWKGTGGK
Sbjct: 116 GAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE NP++KL G+EPVESAVLSGGKPGPHKIQG+GAGFIP
Sbjct: 176 IDIFVSGIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDVN++DE VQISSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIV
Sbjct: 236 GVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VFPSFGERYLSSVLF+SV+KEAESMV E
Sbjct: 296 AVFPSFGERYLSSVLFDSVRKEAESMVIE 324
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/270 (85%), Positives = 252/270 (93%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AF
Sbjct: 56 MITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDP GMKGAV+KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWK T GK
Sbjct: 116 GAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID LVSGIGTGGT+TG G+YL+E NP +KLYGVEPVESAVL+GGKPGPHKIQGIGAGFIP
Sbjct: 176 IDGLVSGIGTGGTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDET+Q+SS+EAIETAK LALKEGLLVGISSGAA AAA+++AKRPENAGKL V
Sbjct: 236 GVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VVFPSFGERYLSSVLF+S+KKEAESMV EP
Sbjct: 296 VVFPSFGERYLSSVLFQSIKKEAESMVVEP 325
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/270 (83%), Positives = 255/270 (94%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L F
Sbjct: 56 MITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
+ELVLTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWKG+ GK
Sbjct: 116 RSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DAL SGIGTGGT+TG+GKYL+E NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDALASGIGTGGTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVL+VNL+D+ VQ+SSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIV
Sbjct: 236 GVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
V+FPSFGERYLSSVLFE+V++EAE+M EP
Sbjct: 296 VIFPSFGERYLSSVLFETVRREAENMTVEP 325
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/269 (83%), Positives = 249/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKG I PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AF
Sbjct: 57 MITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAF 116
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDP GMKGAVQKAEE+ KTPNSY+LQQFEN ANPKIHYETTGPEIWKGTGGK
Sbjct: 117 GAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGK 176
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID LVSGIGTGGT+TG GKYL+E NP IKLYGVEP ESA+L+GGKPGPHKIQGIGAGFIP
Sbjct: 177 IDGLVSGIGTGGTITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIP 236
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+++DET+Q+SS+E+IE AK LALKEGLLVGISSGAA AAAI++A+RPENAGKL V
Sbjct: 237 GVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFV 296
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VVFPSFGERYLSSVLF S+KKEAESMV E
Sbjct: 297 VVFPSFGERYLSSVLFHSIKKEAESMVVE 325
|
Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/269 (83%), Positives = 253/269 (94%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AF
Sbjct: 53 MITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDP GMKGAVQKAEE+ KT NS++LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LVSGIGTGGT+TGAG+YL+E NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGF+P
Sbjct: 173 VDGLVSGIGTGGTITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+L++ETVQ+SS+EAIE AK LALKEGLLVGISSGAA AAA+++A+RPEN GKL V
Sbjct: 233 GVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VVFPSFGERYLSSVLF+S+KKEAE+MV E
Sbjct: 293 VVFPSFGERYLSSVLFQSIKKEAENMVVE 321
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/270 (83%), Positives = 249/270 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AF
Sbjct: 56 MITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDP GMKGA+QKA+E+ K PNSY+LQQFENPANPKIHYETTGPEIWK T GK
Sbjct: 116 GAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LVSGIGTGGTVTG GKYLKE NPEIK+YGVEP ESA+LSGG+PGPHKIQGIGAGF+P
Sbjct: 176 VDILVSGIGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDVNLLDE VQ+SS+EAI AK LALKEGLLVGISSGAA AAI++A+RPEN GKL+V
Sbjct: 236 GVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VVFPSFGERYLSSVLFES+K+EAE+MVFEP
Sbjct: 296 VVFPSFGERYLSSVLFESIKREAENMVFEP 325
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/269 (81%), Positives = 250/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAF
Sbjct: 53 MISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE NP +KLYGVEP+ESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+LLALKEGLLVGISSGAA AAAI++AKRPENAGKL V
Sbjct: 233 SVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VFPSFGERYLS+VLF++ +KEAESM F+
Sbjct: 293 AVFPSFGERYLSTVLFDATRKEAESMTFQ 321
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/269 (81%), Positives = 248/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/269 (81%), Positives = 248/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAF
Sbjct: 55 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAF 114
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GK
Sbjct: 115 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGK 174
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID +SGIGTGGT+TGAGKYLKE NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 175 IDGFISGIGTGGTITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 234
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+ NL+DE VQ+SS+E+I+ A+LLA +EGLLVGISSGAA AAAI++AKRPENAGKL V
Sbjct: 235 NVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFV 294
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VFPSFGERYLS+VLF++ +KEAESM FE
Sbjct: 295 AVFPSFGERYLSTVLFDATRKEAESMTFE 323
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 270 | ||||||
| 356573072 | 325 | PREDICTED: cysteine synthase-like [Glyci | 1.0 | 0.830 | 0.903 | 1e-128 | |
| 224125568 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 0.830 | 0.925 | 1e-127 | |
| 255644573 | 325 | unknown [Glycine max] | 1.0 | 0.830 | 0.896 | 1e-127 | |
| 34099833 | 292 | O-acetylserine (thiol)lyase, partial [Po | 1.0 | 0.924 | 0.922 | 1e-127 | |
| 224144420 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 0.830 | 0.903 | 1e-126 | |
| 224130736 | 325 | predicted protein [Populus trichocarpa] | 1.0 | 0.830 | 0.9 | 1e-126 | |
| 255542380 | 325 | cysteine synthase, putative [Ricinus com | 1.0 | 0.830 | 0.914 | 1e-125 | |
| 255647610 | 325 | unknown [Glycine max] | 1.0 | 0.830 | 0.9 | 1e-125 | |
| 2493895 | 325 | RecName: Full=Cysteine synthase; Short=C | 1.0 | 0.830 | 0.9 | 1e-125 | |
| 307136057 | 325 | cysteine synthase [Cucumis melo subsp. m | 1.0 | 0.830 | 0.885 | 1e-125 |
| >gi|356573072|ref|XP_003554689.1| PREDICTED: cysteine synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/270 (90%), Positives = 260/270 (96%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AF
Sbjct: 56 MIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWKG+ GK
Sbjct: 116 GAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPANPKVHYETTGPEIWKGSSGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DALVSGIGTGGTVTGAGKYLKE NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAA++IAKRPENAGKLIV
Sbjct: 236 GVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLSSVLFESVK+EAES+VFEP
Sbjct: 296 AVFPSFGERYLSSVLFESVKREAESLVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125568|ref|XP_002319618.1| predicted protein [Populus trichocarpa] gi|118482627|gb|ABK93233.1| unknown [Populus trichocarpa] gi|222857994|gb|EEE95541.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/270 (92%), Positives = 262/270 (97%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+ GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF
Sbjct: 56 MITDAEEKGLIKAGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI KTPNSY+LQQFENPANPK+HYETTGPEIWKG+GGK
Sbjct: 116 GAELVLTDPARGMKGAVQKAEEISAKTPNSYILQQFENPANPKVHYETTGPEIWKGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA VSGIGTGGT+TGAGKYLKE NP+IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVL+V+LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 236 GVLNVDLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
+FPSFGERYLSSVLFESVKKEAE+MVFEP
Sbjct: 296 AIFPSFGERYLSSVLFESVKKEAENMVFEP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255644573|gb|ACU22789.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/270 (89%), Positives = 259/270 (95%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AF
Sbjct: 56 MIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENP NPK+HYETTGPEIWKG+ GK
Sbjct: 116 GAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPTNPKVHYETTGPEIWKGSSGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DALVSGIGTGGTVTGAGKYLKE NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAA++IAKRPENAGKL+V
Sbjct: 236 GVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENAGKLVV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLSSVLFESVK+EAES+VFEP
Sbjct: 296 AVFPSFGERYLSSVLFESVKREAESLVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34099833|gb|AAQ57205.1| O-acetylserine (thiol)lyase, partial [Populus tremula x Populus alba] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/270 (92%), Positives = 262/270 (97%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+ GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF
Sbjct: 23 MITDAEEKGLIKAGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 82
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI KTPNSY+LQQFENPANPK+HY+TTGPEIWKG+GGK
Sbjct: 83 GAELVLTDPARGMKGAVQKAEEISAKTPNSYILQQFENPANPKVHYDTTGPEIWKGSGGK 142
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA VSGIGTGGT+TGAGKYLKE NP+IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 143 VDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 202
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVL+V+LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 203 GVLNVDLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIV 262
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
+FPSFGERYLSSVLFESVKKEAE+MVFEP
Sbjct: 263 AIFPSFGERYLSSVLFESVKKEAENMVFEP 292
|
Source: Populus tremula x Populus alba Species: Populus tremula x Populus alba Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144420|ref|XP_002336146.1| predicted protein [Populus trichocarpa] gi|222874214|gb|EEF11345.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/270 (90%), Positives = 260/270 (96%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF
Sbjct: 56 MIKDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDPARGMKGAVQKAEEI KTPN+Y+LQQFENPANPKIHYETTGPE+WKG+GGK
Sbjct: 116 GAELILTDPARGMKGAVQKAEEILAKTPNAYLLQQFENPANPKIHYETTGPEMWKGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA VSGIGTGGT+TGA KYLKE NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDAFVSGIGTGGTITGAAKYLKEQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VLDV LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLI+
Sbjct: 236 AVLDVGLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIEIAKRPENAGKLII 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
V+FPSFGERYLS+VLFESV+KEAE+MVF P
Sbjct: 296 VIFPSFGERYLSTVLFESVRKEAENMVFVP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130736|ref|XP_002328363.1| predicted protein [Populus trichocarpa] gi|222838078|gb|EEE76443.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/270 (90%), Positives = 260/270 (96%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF
Sbjct: 56 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LTDPARG+ GAVQKAEEI KTPN+Y+LQQFENPANPK+HYETTGPE+WKG+GGK
Sbjct: 116 GAELILTDPARGINGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEMWKGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA VSGIGTGGT+TGA KYLKE NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDAFVSGIGTGGTITGAAKYLKEQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV LLDETVQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 236 GVLDVGLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIEIAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
V+FPSFGERYLS+VLFESV+KEAE+MVF P
Sbjct: 296 VIFPSFGERYLSTVLFESVRKEAENMVFVP 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542380|ref|XP_002512253.1| cysteine synthase, putative [Ricinus communis] gi|223548214|gb|EEF49705.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/270 (91%), Positives = 259/270 (95%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMPASMSLERRMVL AF
Sbjct: 56 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRMVLRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI KTPNSY+LQQFENPANPKIHYETTGPEIWKG+GGK
Sbjct: 116 GAELVLTDPARGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D VSGIGTGGTVTGAG YL+E NP+IKL GVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDFFVSGIGTGGTVTGAGGYLREQNPDIKLIGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IA+RPENAGKLIV
Sbjct: 236 GVLDVSLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIARRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
V+FPSFGERYLSSVLFESVK+EAESMVFEP
Sbjct: 296 VIFPSFGERYLSSVLFESVKREAESMVFEP 325
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647610|gb|ACU24268.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/270 (90%), Positives = 259/270 (95%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKG I PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMP+SMSLERR +L AF
Sbjct: 56 MIVDAEEKGFITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPKIHYETTGPEIWKG+ GK
Sbjct: 116 GAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPEIWKGSSGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DALVSGIGTGGT+TGAGKYLK+ NP+IKLYG+EPVES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDALVSGIGTGGTITGAGKYLKDQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDE VQISSEEAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLI+
Sbjct: 236 GVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLII 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLSSVLFESVK+EAESMVFEP
Sbjct: 296 AVFPSFGERYLSSVLFESVKREAESMVFEP 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2493895|sp|Q43317.1|CYSK_CITLA RecName: Full=Cysteine synthase; Short=CSase; AltName: Full=Beta-PA/CSase; AltName: Full=Beta-pyrazolylalanine synthase; AltName: Full=L-mimosine synthase; AltName: Full=O-acetylserine (thiol)-lyase; Short=OAS-TL; AltName: Full=O-acetylserine sulfhydrylase gi|540497|dbj|BAA05965.1| cysteine synthase [Citrullus lanatus subsp. vulgaris] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/270 (90%), Positives = 258/270 (95%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AF
Sbjct: 56 MISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+G+GGK
Sbjct: 116 GAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
IDALVSGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 IDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDVNLLDE +Q+SSEE+IETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 236 GVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLS+VLFESVK+E E+MVFEP
Sbjct: 296 AVFPSFGERYLSTVLFESVKRETENMVFEP 325
|
Source: Citrullus lanatus subsp. vulgaris Species: Citrullus lanatus Genus: Citrullus Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136057|gb|ADN33908.1| cysteine synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/270 (88%), Positives = 256/270 (94%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LII MPASMSLERR +L AF
Sbjct: 56 MISDAEKNGLISPGESVLIEPTSGNTGIGLAFIAAAKGYKLIICMPASMSLERRTILRAF 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWKG+GGK
Sbjct: 116 GAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSGGK 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DALVSGIGTGGTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 176 VDALVSGIGTGGTVTGAGKYLKEQNPSIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDVNLLDE VQ+SSEE+IE AKLLALKEGLLVGISSGAA AAAI++AKRPENAGKLIV
Sbjct: 236 GVLDVNLLDEVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
VFPSFGERYLS+VLFESVK+E E+M FEP
Sbjct: 296 AVFPSFGERYLSTVLFESVKRETENMTFEP 325
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 270 | ||||||
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.996 | 0.835 | 0.743 | 8.3e-106 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.985 | 0.678 | 0.703 | 9.4e-98 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.985 | 0.614 | 0.680 | 1.6e-95 | |
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.985 | 0.820 | 0.635 | 5.9e-89 | |
| TAIR|locus:2143814 | 323 | CYSD2 "cysteine synthase D2" [ | 0.996 | 0.832 | 0.620 | 3.3e-86 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.985 | 0.707 | 0.571 | 1.2e-83 | |
| TAIR|locus:2143754 | 323 | DES1 "L-cysteine desulfhydrase | 0.996 | 0.832 | 0.602 | 1e-82 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.985 | 0.722 | 0.563 | 2.8e-82 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.985 | 0.709 | 0.563 | 7.4e-82 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.985 | 0.757 | 0.563 | 1.5e-81 |
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 200/269 (74%), Positives = 227/269 (84%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VS KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 187/266 (70%), Positives = 220/266 (82%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PG+SVL+E TSGNTGIGLAF+AA+KGY+LI+TMPASMSLERR++L AF
Sbjct: 123 MITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAF 182
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT+PA+GM GA+QKAEEI KTPNSY+LQQF+NPANPKIHYETTGPEIW+ T GK
Sbjct: 183 GAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGK 242
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID LV+ +++KE PE+K+ GVEP ESA+LSGGKPGPHKIQGIGAGF+P
Sbjct: 243 IDILVAGIGTGGTITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVP 302
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD+ ++DE + ISSEEAIET+K LAL+EGLLVGISSG KRPENAGKLI
Sbjct: 303 KNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIA 362
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
VVFPSFGERYLS+ LF+S+++E E M
Sbjct: 363 VVFPSFGERYLSTQLFQSIREECEQM 388
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 181/266 (68%), Positives = 215/266 (80%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AF
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF 220
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GM GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK
Sbjct: 221 GAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGK 280
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V+ +++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 281 VDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIP 340
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD ++DE + ISSEEAIETAK LALKEGL+VGISSG KRPENAGKLI
Sbjct: 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
VVFPSFGERYLS+ LF+S+++E E M
Sbjct: 401 VVFPSFGERYLSTPLFQSIREEVEKM 426
|
|
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 169/266 (63%), Positives = 211/266 (79%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG+S LIE TSGNTGIGLAF+ AAKGY++++TMP+SMSLER+++LLA
Sbjct: 56 MIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKIILLAL 115
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAE+ LTDP++G++G + KAEEI K P+S +L+QF+NP+NP+ HY TTGPEIW+ + G+
Sbjct: 116 GAEVHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWRDSAGE 175
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LV+ ++LKE N + K+YGVEP ESAV+SGGKPG H IQGIGAG IP
Sbjct: 176 VDILVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPGTHLIQGIGAGLIP 235
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD N+LDE +Q++S EAIETAKLLALKEGLLVGISSG KRPENAGKLIV
Sbjct: 236 DNLDFNVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIV 295
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V+FPS GERYLS+ LFESV+ EAE++
Sbjct: 296 VIFPSGGERYLSTSLFESVRHEAENL 321
|
|
| TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 167/269 (62%), Positives = 206/269 (76%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG+S LIEPT+GNTGIGLA M AA+GY++I+ MP++MSLERR++L A
Sbjct: 55 MIKDAEDKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRIILRAL 114
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL L+D G+KG ++K E I KTP Y+ QQFENPANP+IHY TTGPEIW+ + GK
Sbjct: 115 GAELHLSDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGK 174
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LV+ K+LKE N +IK+ VEPVES VLSGG+PGPH IQGIG+G +P
Sbjct: 175 VDILVAGVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPGPHLIQGIGSGIVP 234
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD+ ++DE +Q++ EEAIETAKLLALKEGLLVGISSG KRPENAGKLIV
Sbjct: 235 FNLDLTIVDEIIQVAGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIV 294
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VVFPS GERYLS+ LF+S++ EAE++ E
Sbjct: 295 VVFPSGGERYLSTKLFDSIRYEAENLPIE 323
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 152/266 (57%), Positives = 201/266 (75%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PGE++LIEPTSGN GI +AFMAA +GY++++TMP+ SLERR+ + F
Sbjct: 103 MINDAEEKGLITPGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRCF 162
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+L+LTDP +GM G V+KA ++ + TPN+Y+LQQF NPAN K+H+ETTGPEIW+ T G+
Sbjct: 163 GADLILTDPTKGMGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNGQ 222
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +++YGVEP ES VL+GGKPGPH I G G GF P
Sbjct: 223 VDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSIMGNGVGFKP 282
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD+++L+ ++++SE+A+ A+ LALKEGL+VGISSG K+PEN GKLIV
Sbjct: 283 DILDLDMLERVIEVTSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLIV 342
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLSSVLF+ +++EAE+M
Sbjct: 343 TVHPSFGERYLSSVLFQELRQEAENM 368
|
|
| TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 162/269 (60%), Positives = 203/269 (75%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG+S LIE T GNTGIGLA + A++GY++I+ MP++MSLERR++L A
Sbjct: 55 MIKDAEDKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRAL 114
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAE+ LTD + G+KG ++KA+EI KTP Y+ QF NP NP+IHY TTGPEIW+ + GK
Sbjct: 115 GAEVHLTDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGK 174
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LV+ K+LKE N +IK+ VEP ESAVLSGGKPGPH IQGIG+G IP
Sbjct: 175 VDILVAGVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPGPHLIQGIGSGEIP 234
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
LD++++DE +Q++ EEAIET KLLA+KEGLLVGISSG KRPEN GKLIV
Sbjct: 235 ANLDLSIVDEIIQVTGEEAIETTKLLAIKEGLLVGISSGASAAAALKVAKRPENVGKLIV 294
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
V+FPS GERYLS+ LFESV+ EAE++ E
Sbjct: 295 VIFPSGGERYLSTELFESVRYEAENLPVE 323
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 150/266 (56%), Positives = 201/266 (75%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG++VLIEPTSGN GI +AFMAA KGY++++TMP+ S+ERR+V+ AF
Sbjct: 97 MIEDAEKKGLISPGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRAF 156
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+L+LTDP +GM G V+KA ++ D TP+ ++LQQF NPAN ++H+ETTGPEIW+ T GK
Sbjct: 157 GADLILTDPDKGMGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQGK 216
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +K+YGVEP ES +L+GGKPGPH I G G GF P
Sbjct: 217 VDIFVMGIGSGGTVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKP 276
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD++++D +++ S++A++ A+ LAL+EGLLVGISSG KRPEN GKLIV
Sbjct: 277 EILDMDVMDAVLEVKSDDAVKMARQLALQEGLLVGISSGANTIAALDLAKRPENKGKLIV 336
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
+ PSFGERYLSS LF+ +++EAE+M
Sbjct: 337 TIHPSFGERYLSSALFKELREEAENM 362
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 150/266 (56%), Positives = 198/266 (74%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI PGE+ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + F
Sbjct: 104 MINDAEEKGLITPGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVCMRCF 163
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+L+LTDP +GM G V+KA ++ + TPN+++LQQF NPAN K+H+ETTGPEIW+ T G+
Sbjct: 164 GADLILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQ 223
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +++YGVEP ES VL+GGKPGPH I G G GF P
Sbjct: 224 VDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSITGNGVGFKP 283
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD+++++ +++ SE+A+ A+ LALKEGL+VGISSG K+PEN GKLIV
Sbjct: 284 DILDMDMMERVIEVRSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLIV 343
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V SFGERYLSSVLF+ +++EAE+M
Sbjct: 344 TVHASFGERYLSSVLFQDLRQEAENM 369
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 150/266 (56%), Positives = 197/266 (74%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG++ LIEPTSGN GI +AFMAA KGY++I+TMP+ SLERR+ + AF
Sbjct: 80 MINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAF 139
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+LV TDP +GM G ++KA ++ + TPN+Y+LQQF NPAN + H+ETTGPEIW+ T G
Sbjct: 140 GADLVTTDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQGN 199
Query: 121 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V +YLK NP +K+YG+EP ES VL+GG PGPH+I G G GF P
Sbjct: 200 VDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPGPHEITGNGVGFKP 259
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIV 240
+LD+++++E + +SSEE++ A+ LALKEGL+VGISSG RPEN GKLIV
Sbjct: 260 DILDMDVMEEVLMVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENKGKLIV 319
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
+ PSFGERYLSSVL+E ++KEA++M
Sbjct: 320 TIHPSFGERYLSSVLYEDIRKEAQNM 345
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5945 | 0.9555 | 0.8322 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5945 | 0.9555 | 0.8322 | yes | no |
| P57171 | CYSK_BUCAI | 2, ., 5, ., 1, ., 4, 7 | 0.5604 | 0.8851 | 0.7587 | yes | no |
| P63871 | CYSK_STAAN | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| P63872 | CYSK_STAAW | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| P37887 | CYSK_BACSU | 2, ., 5, ., 1, ., 4, 7 | 0.5697 | 0.9407 | 0.8246 | yes | no |
| P31300 | CYSKP_CAPAN | 2, ., 5, ., 1, ., 4, 7 | 0.7368 | 0.9481 | 0.6844 | N/A | no |
| P45040 | CYSK_HAEIN | 2, ., 5, ., 1, ., 4, 7 | 0.5447 | 0.9592 | 0.8196 | yes | no |
| P63870 | CYSK_STAAM | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| P47998 | CYSK1_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.8104 | 0.9962 | 0.8354 | yes | no |
| O81155 | CYSKP_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.7631 | 0.9851 | 0.6891 | N/A | no |
| Q8KA48 | CYSK_BUCAP | 2, ., 5, ., 1, ., 4, 7 | 0.5625 | 0.9666 | 0.8105 | yes | no |
| P0ABK6 | CYSK_ECO57 | 2, ., 5, ., 1, ., 4, 7 | 0.5494 | 0.9740 | 0.8142 | N/A | no |
| P38076 | CYSK_WHEAT | 2, ., 5, ., 1, ., 4, 7 | 0.8364 | 0.9962 | 0.8276 | N/A | no |
| P0ABK5 | CYSK_ECOLI | 4, ., 5, ., 1, ., 5 | 0.5494 | 0.9740 | 0.8142 | N/A | no |
| Q6GJF8 | CYSK_STAAR | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| Q6GBX5 | CYSK_STAAS | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| O81154 | CYSK_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.8333 | 1.0 | 0.8307 | N/A | no |
| Q5HIG2 | CYSK_STAAC | 2, ., 5, ., 1, ., 4, 7 | 0.5408 | 0.9370 | 0.8161 | yes | no |
| P0A1E4 | CYSK_SALTI | 2, ., 5, ., 1, ., 4, 7 | 0.5567 | 0.9740 | 0.8142 | N/A | no |
| P32260 | CYSKP_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.7218 | 0.9851 | 0.6945 | N/A | no |
| P0A1E3 | CYSK_SALTY | 2, ., 5, ., 1, ., 4, 7 | 0.5567 | 0.9740 | 0.8142 | yes | no |
| Q8CMT6 | CYSK_STAES | 2, ., 5, ., 1, ., 4, 7 | 0.5291 | 0.9370 | 0.8161 | yes | no |
| Q5XAQ3 | CYSK_STRP6 | 2, ., 5, ., 1, ., 4, 7 | 0.5542 | 0.9407 | 0.8115 | N/A | no |
| P73410 | CYSK_SYNY3 | 2, ., 5, ., 1, ., 4, 7 | 0.6115 | 0.9629 | 0.8333 | N/A | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5937 | 0.9444 | 0.8225 | yes | no |
| Q5HRP1 | CYSK_STAEQ | 2, ., 5, ., 1, ., 4, 7 | 0.5291 | 0.9370 | 0.8161 | yes | no |
| Q43317 | CYSK_CITLA | 2, ., 5, ., 1, ., 5, 2 | 0.9 | 1.0 | 0.8307 | N/A | no |
| Q00834 | CYSK_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.8736 | 0.9962 | 0.8276 | N/A | no |
| P80608 | CYSK_MAIZE | 2, ., 5, ., 1, ., 4, 7 | 0.8518 | 1.0 | 0.8307 | N/A | no |
| Q9XEA8 | CYSK2_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8333 | 1.0 | 0.8307 | no | no |
| P71128 | CYSM_CAMJE | 2, ., 5, ., 1, ., 4, 7 | 0.4863 | 0.9296 | 0.8394 | yes | no |
| O23733 | CYSK1_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8178 | 0.9962 | 0.8354 | N/A | no |
| Q7DDL5 | CYSK_NEIMB | 2, ., 5, ., 1, ., 4, 7 | 0.5797 | 0.9444 | 0.8225 | yes | no |
| Q9XEA6 | CYSK1_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8327 | 0.9962 | 0.8380 | yes | no |
| O23735 | CYSK2_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8141 | 0.9962 | 0.8302 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00130338 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (326 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XV0472 | serine O-acetyltransferase (EC-2.3.1.30) (293 aa) | • | • | • | • | 0.942 | |||||
| estExt_fgenesh4_pg.C_410108 | serine O-acetyltransferase (EC-2.3.1.30) (294 aa) | • | • | • | • | 0.941 | |||||
| estExt_fgenesh4_pm.C_LG_I1139 | serine O-acetyltransferase (EC-2.3.1.30) (334 aa) | • | • | • | • | 0.938 | |||||
| estExt_fgenesh4_pg.C_LG_V0392 | hypothetical protein (395 aa) | • | • | • | 0.923 | ||||||
| gw1.IX.3567.1 | sulfite reductase (EC-1.8.7.1) (576 aa) | • | • | 0.917 | |||||||
| gw1.I.1513.1 | sulfite reductase (EC-1.8.7.1) (634 aa) | • | • | 0.914 | |||||||
| estExt_Genewise1_v1.C_LG_I4741 | phosphateglycerate kinase (EC-2.5.1.47) (424 aa) | • | • | • | • | 0.907 | |||||
| gw1.XIV.1323.1 | cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa) | • | • | • | 0.902 | ||||||
| grail3.0039007102 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa) | • | • | • | 0.902 | ||||||
| eugene3.00700109 | hypothetical protein (324 aa) | • | • | • | 0.901 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 270 | |||
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 0.0 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-146 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-144 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-139 | |
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-138 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-135 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-134 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-127 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 1e-100 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 8e-90 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 1e-83 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 2e-77 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 4e-63 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 6e-63 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 4e-54 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 3e-26 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 2e-15 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 2e-14 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 9e-12 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 2e-10 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 8e-09 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 1e-08 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 2e-08 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 5e-07 | |
| PRK06608 | 338 | PRK06608, PRK06608, threonine dehydratase; Provisi | 9e-06 | |
| PLN02550 | 591 | PLN02550, PLN02550, threonine dehydratase | 2e-05 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 2e-05 | |
| TIGR00263 | 385 | TIGR00263, trpB, tryptophan synthase, beta subunit | 3e-05 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 1e-04 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 1e-04 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 2e-04 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 2e-04 | |
| PRK06110 | 322 | PRK06110, PRK06110, hypothetical protein; Provisio | 5e-04 | |
| cd06446 | 365 | cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr | 0.001 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 0.001 | |
| COG0133 | 396 | COG0133, TrpB, Tryptophan synthase beta chain [Ami | 0.002 | |
| TIGR03528 | 396 | TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni | 0.002 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 0.002 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 507 bits (1308), Expect = 0.0
Identities = 248/270 (91%), Positives = 263/270 (97%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAEEKGLI+PGESVLIEPTSGNTGIGLAFMAAAKGY+LIITMPASMSLERR++LLAF
Sbjct: 53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GMKGAVQKAEEI KTPNSY+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA VSGIGTGGT+TGAGKYLKE NP+IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP
Sbjct: 173 VDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
GVLDV+LLDE VQ+SS+EAIETAKLLALKEGLLVGISSGAA AAAI+IAKRPENAGKLIV
Sbjct: 233 GVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270
V+FPSFGERYLSSVLFESVKKEAE+MVFEP
Sbjct: 293 VIFPSFGERYLSSVLFESVKKEAENMVFEP 322
|
Length = 322 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 411 bits (1058), Expect = e-146
Identities = 166/256 (64%), Positives = 209/256 (81%), Gaps = 1/256 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++PG+ +IE TSGNTGI LA +AAAKGY+LI+TMP +MSLERR +L A+
Sbjct: 45 MIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAY 103
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LT GMKGA+ KAEE+ +T +L QFENPANP+ HY+TTGPEIW+ T G+
Sbjct: 104 GAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGR 163
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID V+G+GTGGT+TG G+YLKE NP IK+ VEP ES VLSGG+PGPHKIQGIGAGFIP
Sbjct: 164 IDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIP 223
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
+LD++L+DE + +S E+AIETA+ LA +EG+LVGISSGAA AAA+++AKR ENA K+IV
Sbjct: 224 KILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIV 283
Query: 241 VVFPSFGERYLSSVLF 256
+ P GERYLS+ LF
Sbjct: 284 AILPDTGERYLSTGLF 299
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-144
Identities = 173/257 (67%), Positives = 212/257 (82%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++PG+ ++EPTSGNTGI LA +AAA+GY+LI+TMP +MS+ERR +L A+
Sbjct: 44 MIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAY 102
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
GAELVLT A GMKGA+ KAEEI TPNSY LQQFENPANP+IH +TTGPEIW+ T G
Sbjct: 103 GAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDG 162
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
K+DA V+G+GTGGT+TG G+ LKE P IK+ VEP ES VLSGGKPGPHKIQGIGAGFI
Sbjct: 163 KLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFI 222
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P L+ +++DE + +S EEAIETA+ LA +EG+LVGISSGAA AAA+++AKRPE KLI
Sbjct: 223 PKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-PDKLI 281
Query: 240 VVVFPSFGERYLSSVLF 256
VV+ PS GERYLS+ LF
Sbjct: 282 VVILPSTGERYLSTPLF 298
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-139
Identities = 156/254 (61%), Positives = 196/254 (77%), Gaps = 4/254 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++PG + +IEPTSGNTGIGLA +AAAKGYR II MP +MS E+R +L A
Sbjct: 40 MIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRAL 98
Query: 61 GAELVLTDPA--RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG 118
GAE++LT A GMKGA+ KA E+ +TPN++ L QFENPANP+ HYETT PEIW+
Sbjct: 99 GAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLD 158
Query: 119 GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGF 178
GK+DA V+G+GTGGT+TG +YLKE NP +++ GV+PV S + SGG PGPHKI+GIGAGF
Sbjct: 159 GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGF 218
Query: 179 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 238
IP LD +L+DE V++S EEA A+ LA +EGLLVG SSGAA AAA+++AKR GK
Sbjct: 219 IPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKT 277
Query: 239 IVVVFPSFGERYLS 252
IV + P GERYLS
Sbjct: 278 IVTILPDSGERYLS 291
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 391 bits (1005), Expect = e-138
Identities = 185/269 (68%), Positives = 228/269 (84%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+KGLI PG+S LIE T+GNTGIGLA + AA+GY++I+ MP++MSLERR++L A
Sbjct: 55 MIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRAL 114
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAE+ LTD + G+KG ++KAEEI KTP Y+ QQFENPANP+IHY TTGPEIW+ + GK
Sbjct: 115 GAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGK 174
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D LV+G+GTGGT TG GK+LKE N +IK+ VEPVESAVLSGG+PGPH IQGIG+G IP
Sbjct: 175 VDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIP 234
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
LD+ ++DE +Q++ EEAIETAKLLALKEGLLVGISSGAA AAA+++AKRPENAGKLIV
Sbjct: 235 FNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIV 294
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
V+FPS GERYLS+ LFESV+ EAE++ E
Sbjct: 295 VIFPSGGERYLSTKLFESVRYEAENLPIE 323
|
Length = 323 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 388 bits (997), Expect = e-135
Identities = 184/266 (69%), Positives = 221/266 (83%), Gaps = 1/266 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AF
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF 220
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GM GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK
Sbjct: 221 GAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGK 280
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V+GIGTGGT+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 281 VDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIP 340
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
LD ++DE + ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI
Sbjct: 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V + G R + + S+ +
Sbjct: 401 VSLFASG-RDIYTPRCSSLSGKRWRK 425
|
Length = 429 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-134
Identities = 170/266 (63%), Positives = 219/266 (82%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE+K LI PG++ LIEPTSGN GI LAFMAA KGY++I+TMP+ SLERR+ + AF
Sbjct: 97 MIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAF 156
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDP +GM G V+KA E+ + TP++++LQQF NPAN ++H+ETTGPEIW+ T G+
Sbjct: 157 GAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQ 216
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V GIG+GGTV+G GKYLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P
Sbjct: 217 VDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKP 276
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
+LD++++++ +++SSE+A+ A+ LALKEGL+VGISSGA T AA+++AK PEN GKLIV
Sbjct: 277 DILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIV 336
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLSSVLF+ ++KEAE+M
Sbjct: 337 TVHPSFGERYLSSVLFQELRKEAENM 362
|
Length = 368 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 364 bits (936), Expect = e-127
Identities = 154/254 (60%), Positives = 198/254 (77%), Gaps = 5/254 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++PG ++E TSGNTGI LA +AAAKGYRLII MP +MS ERR +L A
Sbjct: 49 MIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRAL 107
Query: 61 GAELVLTDPARG-MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTG 118
GAE++LT A G MKGA+++A+E+ + P V L QFENPANP+ HYETTGPEIW+ T
Sbjct: 108 GAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD 167
Query: 119 GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGF 178
GK+DA V+G+GTGGT+TG +YLKE NP +++ V+P S +LSGG+ GPHKI+GIGAGF
Sbjct: 168 GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGF 226
Query: 179 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 238
+P LD++L+DE +++S EEAI TA+ LA +EGLLVGISSGAA AAA+++AK AGK
Sbjct: 227 VPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKT 285
Query: 239 IVVVFPSFGERYLS 252
IV + P GERYLS
Sbjct: 286 IVTILPDSGERYLS 299
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = e-100
Identities = 117/270 (43%), Positives = 165/270 (61%), Gaps = 15/270 (5%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I DAE++GL++PG ++E T+GNTGIGLA +AAA+GY+ +I MP + S E++ +L A
Sbjct: 51 IIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRAL 109
Query: 61 GAELVLT------DPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEI 113
GAELVL +P +KGA + AEE+ PN + QF+NPAN + HYETTGPEI
Sbjct: 110 GAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEI 169
Query: 114 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA----VLSG--GKPG 167
W+ T GK+D V +GTGGT+ G +YLKE NP++K+ +P SA +G G
Sbjct: 170 WEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEG 229
Query: 168 PHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227
+GIG G I L+ +D+ ++I EEA+ TA L +EGL +G SSG AAA++
Sbjct: 230 SSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALR 289
Query: 228 IAKRPENAGKLIVVVFPSFGERYLSSVLFE 257
+A+ G IV + GERY S +
Sbjct: 290 LARE-LGPGHTIVTILCDSGERYQSKLFNP 318
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (686), Expect = 8e-90
Identities = 115/261 (44%), Positives = 164/261 (62%), Gaps = 17/261 (6%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE++G I+PG+ LIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 50 MIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAY 108
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A +++ + VL QF NP NP HYETTGPEIW+ T G+
Sbjct: 109 GAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGR 167
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI---GAG 177
I VS +GT GT+ G +YLKE NP +++ G++P E + I GI
Sbjct: 168 ITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGS----------SIPGIRRWPEE 217
Query: 178 FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 237
++P + D + +D + +S +EA T + LA +EG+ G+SSG A AAA++IA+ NA
Sbjct: 218 YLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNA-- 275
Query: 238 LIVVVFPSFGERYLSSVLFES 258
+IV + G+RYLS+ +F +
Sbjct: 276 VIVAIICDRGDRYLSTGVFPA 296
|
Length = 296 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 1e-83
Identities = 110/256 (42%), Positives = 164/256 (64%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ER+ + A+
Sbjct: 46 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAY 104
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L GM+GA A E+ ++ L QF NP NP HY +TGPEIW+ TGG+
Sbjct: 105 GAELILVTKEEGMEGARDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQQTGGR 163
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS +GT GT+ G ++LKE NP +++ G++P E + + G I+ ++P
Sbjct: 164 ITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLP 216
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
G+ D +L+D + I +A T + LA++EG+ G+SSG A AAA+++A+ E ++V
Sbjct: 217 GIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELPDAVVV 274
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 275 AIICDRGDRYLSTGVF 290
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 2e-77
Identities = 113/264 (42%), Positives = 166/264 (62%), Gaps = 11/264 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++PG +IEPTSGNTGIGLA +AA KGY+ II +P MS E+ VL A
Sbjct: 49 MIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKAL 107
Query: 61 GAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GAE+V T A + + A+ + + P +++L Q+ NP+NP HY+ TGPEI +
Sbjct: 108 GAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQC 167
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP------GPHKI 171
GK+D V+G GTGGT+TG +YLKE NP+ ++ G +P E ++L+ + P+K+
Sbjct: 168 EGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGRTPYKV 226
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 231
+GIG FIP VLD ++DE ++ +E+ + A+ L +EGLLVG SSG+A AA++ A+
Sbjct: 227 EGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAED 286
Query: 232 PENAGKLIVVVFPSFGERYLSSVL 255
++IVV+ P Y++ L
Sbjct: 287 ELTEDQVIVVLLPDSIRNYMTKFL 310
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 4e-63
Identities = 92/258 (35%), Positives = 140/258 (54%), Gaps = 8/258 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A ++G I PG + +IE +SGN GI LA + A KG R I + ++S + +L A+
Sbjct: 45 ILEAAIKRGRITPG-TTIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKLLRAY 103
Query: 61 GAELVLT---DPARGMKGA-VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
GAE+ D G G + + E+ P++Y Q+ NP NP+ HY TG EI +
Sbjct: 104 GAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIAR- 162
Query: 117 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGA 176
+D L G+ T GT+ G + L+E P K+ V+ V S V+ GG PG I G+GA
Sbjct: 163 AFPPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS-VIFGGPPGRRHIPGLGA 221
Query: 177 GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG 236
+P +LD +L+D+ V + + + + LA +EG+L G SSG AA ++ R G
Sbjct: 222 SVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPRIP-PG 280
Query: 237 KLIVVVFPSFGERYLSSV 254
+V + P GERYL +V
Sbjct: 281 STVVAILPDRGERYLDTV 298
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 6e-63
Identities = 92/245 (37%), Positives = 126/245 (51%), Gaps = 41/245 (16%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I AEE+G + G V+IE T GNTGI LA AA G + I MP S E+ + A
Sbjct: 38 LILLAEEEGKLPKG--VIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRAL 95
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG- 119
GAE+VL A+ A+E+ ++ P +Y + QF+NPAN T G EI + GG
Sbjct: 96 GAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQ 152
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
K DA+V +G GG + G + LKE P +K+ GVEP
Sbjct: 153 KPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------ 188
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
E V +S EEA+E +LLA +EG+LV SS AA AAA+++AK+ GK +
Sbjct: 189 ----------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTV 237
Query: 240 VVVFP 244
VV+
Sbjct: 238 VVILT 242
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 4e-54
Identities = 89/259 (34%), Positives = 131/259 (50%), Gaps = 22/259 (8%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A E+G + ++E +SGNTG LA AA G ++ I +P S + +++ A
Sbjct: 43 LLLRALERG------ATVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRAL 96
Query: 61 GAELVL---TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GAE++L ++A E+ L Q+ NP N Y+T G EI +
Sbjct: 97 GAEVILVVSEGDYDDALELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQL 155
Query: 118 G-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG------KPGPHK 170
G G DA+V +G GG G + LKE P I++ GVEP + L+ P P
Sbjct: 156 GQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTT 215
Query: 171 IQGIGAGFI-PGVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225
I G+G G G L + L+DE +S EEA+E +LLA +EG+LV SS AA AAA
Sbjct: 216 IAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAAALAAA 275
Query: 226 IQIAKRPENAGKLIVVVFP 244
+++A+ GK +VVV
Sbjct: 276 LRLAELELGKGKRVVVVLT 294
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-26
Identities = 88/310 (28%), Positives = 139/310 (44%), Gaps = 60/310 (19%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I +A E G + PG V+ E ++G+T I LA +A A G + + +P +++E+ +L A
Sbjct: 91 IIEEALESGQLFPG-GVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEAL 149
Query: 61 GAELVLTDP------------AR-----------------GMKGAVQK------AEEIR- 84
GA + P AR G + +EE +
Sbjct: 150 GATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKE 209
Query: 85 -----DKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGK 139
+ QFEN AN + HYE TGPEIW+ T G +DA V+ GTGGT+ G +
Sbjct: 210 NSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSR 269
Query: 140 YLKEHNPEIKLYGVEPVESAVLSG-------------GK----PGPHKIQGIGAGFIPGV 182
+L+E NP IK + ++P S + + G+ P +GIG +
Sbjct: 270 FLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQN 329
Query: 183 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+ LD + + +EA+E ++ L +GL VG SS A+++A+ G IV +
Sbjct: 330 FLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTI 388
Query: 243 FPSFGERYLS 252
G R+LS
Sbjct: 389 LCDSGMRHLS 398
|
Length = 423 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-15
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 39/243 (16%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+A+ A G I MP + + A+GAE+VL A KA
Sbjct: 72 SAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYG--EDFDEAEAKAR 129
Query: 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG----------GKIDALVSGIGTG 131
E+ ++ +++ +P + P++ G G +DA+ +G G
Sbjct: 130 ELAEEEGLTFI-----HPFD--------DPDVIAGQGTIGLEILEQVPDLDAVFVPVGGG 176
Query: 132 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHKIQGI----GAGFIPGVL 183
G + G +K +P K+ GVEP + ++ GKP A PG L
Sbjct: 177 GLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGEL 236
Query: 184 --DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
++ L+D+ V +S +E LL +E L+ + A AA + + GK +
Sbjct: 237 TFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDLK--GKKV 294
Query: 240 VVV 242
VVV
Sbjct: 295 VVV 297
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 25/238 (10%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+A+ A G + I MP + + +GAE++L A AE
Sbjct: 81 SAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAE 138
Query: 82 EIRDKTPNSYVLQQFENPANPKIH----YETTGPEIWKGTGGKIDALVSGIGTGGTVTGA 137
E+ ++ + F++P T EI + DA+ +G GG ++G
Sbjct: 139 ELAEEE-GLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGI 192
Query: 138 GKYLKEHNPEIKLYGVEPVESAVL-----SGGKP----GPHKI-QGIG---AGFIPGVLD 184
LK +PEIK+ GVEP + + +G I G+ G + +
Sbjct: 193 ATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEIL 252
Query: 185 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
L+D+ V + +E + L + ++ + A AA + P ++V++
Sbjct: 253 RELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVIL 310
|
Length = 347 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-12
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G+A+ A G + +I MP S + ++GAE++L A A
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILH--GDDYDEAYAFAT 112
Query: 82 EIRDKTPNSYVLQQFENP---ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 138
+ ++ +V F++ A T G EI + +D ++ +G GG ++G
Sbjct: 113 SLAEEEGRVFV-HPFDDEFVMAGQG----TIGLEIME-DIPDVDTVIVPVGGGGLISGVA 166
Query: 139 KYLKEHNPEIKLYGVE----PVESAVLSGGKPGPHK-IQGIGAGFI---PGVLDVNLL-- 188
K+ NP +K+ GVE P L GK + ++ I G PG L N++
Sbjct: 167 SAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKE 226
Query: 189 --DETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
D+ V + EE I A L L+ ++ +GAA AA+ K K+ VV+
Sbjct: 227 YVDDVVTVDEEE-IANAIYLLLERHKILAEGAGAAGVAALLEQKVDVKGKKIAVVL 281
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 19 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL-VLTDPARGMKGAV 77
I +SGN G G+A A G + + P S + + A GAE+ + A + A
Sbjct: 72 ITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAA 131
Query: 78 QKAEEIRDKTPNSYVLQQFENPAN-PKI--HYETTGPEIWKGTGGKIDALVSGIGTGGTV 134
++A E + K + +P N P++ T G E+ + +DA+ +G GG +
Sbjct: 132 RRAAEQQGKV--------YISPYNDPQVIAGQGTIGMELVE-QQPDLDAVFVAVGGGGLI 182
Query: 135 TGAGKYLKEHNPEIKLYGVEPVESAV------------------LSGGKPGPHKIQGIGA 176
+G YLK +P+ ++ G P S LS G G G+
Sbjct: 183 SGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAG-----GVEP 237
Query: 177 GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG 236
G I L L+D+ V +S EE E +L+A + L+ ++G A AAA+++A R + G
Sbjct: 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--G 295
Query: 237 KLIVVV 242
K + VV
Sbjct: 296 KKVAVV 301
|
Length = 317 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-09
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 42/260 (16%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG- 72
G + ++GNT LA AA G + ++ +PA +L + LA+GA ++ +
Sbjct: 69 GVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDD 128
Query: 73 -MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YETTGPEIWKGTGGKI-DALVSGIG 129
++ + AEE N L NP ++ +T EI + G ++ D +V +G
Sbjct: 129 ALRLVRELAEE------NWIYLSNSLNPY--RLEGQKTIAFEIAEQLGWEVPDYVVVPVG 180
Query: 130 TGGTVTGAGKYLKE--------HNPEIKLYGV-----EPVESAVLSGGK-----PGPHKI 171
GG +T K KE P ++ GV P+ A G P I
Sbjct: 181 NGGNITAIWKGFKELKELGLIDRLP--RMVGVQAEGAAPIVRAFKEGKDDIEPVENPETI 238
Query: 172 -QGIGAGF---IPGVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATA 223
I G P L + E+ V +S EE +E KLLA EG+ V +S A+ A
Sbjct: 239 ATAIRIGNPASGPKALRA--VRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLA 296
Query: 224 AAIQIAKRPENAGKLIVVVF 243
++ + VVV
Sbjct: 297 GLKKLREEGIIDKGERVVVV 316
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKG 75
+I ++GN G+AF AA G + +I MP + + + FG E+VL G
Sbjct: 68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVL----HGANFDD 123
Query: 76 AVQKAEEIRDKTPNSYVLQQFENP---ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 132
A KA E+ + +++ F++P A T EI + +DA+ +G GG
Sbjct: 124 AKAKAIELSQEKGLTFI-HPFDDPLVIAGQG----TLALEILRQVANPLDAVFVPVGGGG 178
Query: 133 TVTGAGKYLKEHNPEIKLYGVEPVESAVL 161
G +K+ PEIK+ GVEP +S +
Sbjct: 179 LAAGVAALIKQLMPEIKVIGVEPTDSDCM 207
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62
A+ +G+I ++GN G+A AA G + +I MP + + + A G
Sbjct: 81 AEQLARGVI--------TASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGG 132
Query: 63 ELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKID 122
E+VL + A+ A ++ ++ ++V F++P + T EI + G +D
Sbjct: 133 EVVLHGES--FPDALAHALKLAEEEGLTFV-PPFDDP-DVIAGQGTVAMEILRQHPGPLD 188
Query: 123 ALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161
A+ +G GG + G Y+K PEIK+ GVEP +S L
Sbjct: 189 AIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCL 227
|
Length = 521 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 20/238 (8%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
+I ++GN G+A+ A+ G I MP ++ + A+GA ++LT R A
Sbjct: 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT--GRDYDEAH 133
Query: 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGA 137
+ A++I N ++ F + T G EI + +D ++ +G GG ++G
Sbjct: 134 RYADKIA-MDENRTFIEAFNDRWVISGQ-GTIGLEIMEDLP-DLDQIIVPVGGGGLISGI 190
Query: 138 GKYLKEHNPEIKLYGVEPVES----AVLSGGKPGPHK-----IQGIGAGFIPGVLDVNL- 187
K NP +K+ G+E S A L GK H GI + PG L ++
Sbjct: 191 ALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKY-PGDLTFDIA 249
Query: 188 ---LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+D+ V + +EE++ A + +V SGA AAI K K+ +VV
Sbjct: 250 KNYVDDIVTV-TEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVDVKGKKVAIVV 306
|
Length = 406 |
| >gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-06
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81
++GN G +A+ + G + I +P + S ++ L +G E++LT R + A +KA+
Sbjct: 79 STGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT-NTR--QEAEEKAK 135
Query: 82 EIRDKTPNSYVLQQFENPANPKIHYE-TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKY 140
E D+ Y + ++ + I T E + G DA+ + G GG ++G Y
Sbjct: 136 E--DEEQGFYYIHPSDSDS--TIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGT--Y 189
Query: 141 LKEH--NPEIKLYGVEPVES 158
L + +P L G EP+ +
Sbjct: 190 LAKELISPTSLLIGSEPLNA 209
|
Length = 338 |
| >gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 77
+I ++GN G+A A G +I MP + + + GA +VL +
Sbjct: 160 VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYD---EA 216
Query: 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGA 137
Q + R + F++P + T G EI + G + A+ +G GG + G
Sbjct: 217 QAYAKQRALEEGRTFIPPFDHP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGI 275
Query: 138 GKYLKEHNPEIKLYGVEPVESAVLS 162
Y+K PE+K+ GVEP ++ ++
Sbjct: 276 AAYVKRVRPEVKIIGVEPSDANAMA 300
|
Length = 591 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 61/268 (22%), Positives = 99/268 (36%), Gaps = 64/268 (23%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARG 72
G ++ +SGNTG A AA G ++ + P +S + +L GA ++ G
Sbjct: 125 GAKTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI---AVDG 181
Query: 73 MKGAVQK-AEEIRDKTPNSYVLQQFENPANP------KIHYETTGPEIWKGTGGKI-DAL 124
Q+ +E ++ + N NP K + EI + G K D +
Sbjct: 182 NFDDAQELVKEAANREGLLSAV----NSINPYRLEGQKTYAF----EIAEQLGWKAPDHV 233
Query: 125 VSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLD 184
V +G GG + K KE P I P + V + GF PGV
Sbjct: 234 VVPVGNGGNLLAIYKGFKEGLP-IGKIDKAPNMNGVQA-------------EGFSPGVYA 279
Query: 185 VNLLDETVQISS------------------------------EEAIETAKLLALKEGLLV 214
ET + + EE +E KLLA +EG+L+
Sbjct: 280 WKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILI 339
Query: 215 GISSGAATAAAIQIAKRPENAGKLIVVV 242
S A AA +++ ++ + + +V+V
Sbjct: 340 EPHSAVAVAALLKLREKIIDPDETVVLV 367
|
Length = 411 |
| >gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 72/277 (25%), Positives = 116/277 (41%), Gaps = 62/277 (22%)
Query: 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER------RMVLLAFGAELV-LTDP 69
++ E +G G+ A AA G + M A +ER RM LL GA+++ +T
Sbjct: 101 IIAETGAGQHGVATATAAALLGLDCEVYMGAE-DVERQKPNVFRMELL--GAKVIPVTSG 157
Query: 70 ARGMKGAVQKAEEIRDKTPNS----YVLQQFENPAN-PKI--HYETT-GPE----IWKGT 117
+ +K AV +A +RD + YVL P P + +++ G E I +
Sbjct: 158 SGTLKDAVNEA--LRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQE 215
Query: 118 GGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVE--------PVESAVLSGGKPGP 168
G DA+++ +G G G ++ +P ++L GVE +A L+ G PG
Sbjct: 216 GRLPDAVIACVGGGSNAIGIFYAFID--DPSVQLIGVEAGGLGIDTDKHAATLAKGSPG- 272
Query: 169 HKIQG------------------IGAGF-IPGV-LDVNLLDET-----VQISSEEAIETA 203
+ G + AG PGV + L ET I+ +EA+E
Sbjct: 273 -VLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAF 331
Query: 204 KLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
KLL+ EG++ + S A A +IA ++V
Sbjct: 332 KLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVV 368
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model [Amino acid biosynthesis, Aromatic amino acid family]. Length = 385 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 108 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161
T EI + +DA+ +G GG + G Y+K+ PEIK+ GVEP +SA L
Sbjct: 157 TIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACL 210
|
Length = 504 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 68/252 (26%), Positives = 103/252 (40%), Gaps = 50/252 (19%)
Query: 19 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT----DPARGMK 74
I ++GN G+A A G + +I MP + L + A GAE++L D A
Sbjct: 72 IAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAF- 130
Query: 75 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG----------GKIDAL 124
A++ A+E + T F +P + E+ G G +D +
Sbjct: 131 -ALEYAKE-NNLT--------FIHPFEDE--------EVMAGQGTIALEMLDEISDLDMV 172
Query: 125 VSGIGTGGTVTGAGKYLKEHNPEIKLYGV----EPVESAVLSGGKPGPHK-IQGIGAGFI 179
V +G GG ++G K+ NP IK+ GV P K K ++ I G
Sbjct: 173 VVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGI- 231
Query: 180 PGVLDVN---------LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230
V D + +D+ VQ+ EE I A L L++ +V +GAA+ AA+ K
Sbjct: 232 -AVRDASPINLAIILECVDDFVQVDDEE-IANAILFLLEKQKIVVEGAGAASVAALLHQK 289
Query: 231 RPENAGKLIVVV 242
GK I VV
Sbjct: 290 IDLKKGKKIGVV 301
|
Length = 403 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 116 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE----SAVLSGGKP 166
G D + +G GG ++G YLKE +P+ K+ GVEP A L GKP
Sbjct: 175 EKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKP 229
|
Length = 420 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKP----GPHKI- 171
+D +V IG GG ++G +K PE+++ GV+ + L+ G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 172 QGIGAGFIPGVLDV----NLLDETVQISSEE---AI----ETAKLLALKEGLLVGISSGA 220
GI PG L L+D+ V +S EE AI E AKL+ EG +GA
Sbjct: 231 DGIAVK-RPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 221 ATAAAIQIAKRPENAGKLIVVV 242
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
|
Length = 404 |
| >gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65
P +I T GN G +AF A G I +P S+E+ + A GAEL+
Sbjct: 67 GPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
|
Length = 322 |
| >gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 32/128 (25%)
Query: 145 NPEIKLYGVEPV--------ESAVLSGGKPG-------------PHKIQG---IGAGF-I 179
+ ++KL GVE +A L GG G +I I AG
Sbjct: 226 DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDY 285
Query: 180 PGV--LDVNLLD----ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 233
PGV L D E V ++ EEA+E KLLA EG++ + S A A AI++AK+
Sbjct: 286 PGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL- 344
Query: 234 NAGKLIVV 241
K+IVV
Sbjct: 345 GKEKVIVV 352
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 108 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 155
T EI K D +V +G GG ++G YL +P+ K+ GVEP
Sbjct: 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 67/280 (23%)
Query: 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER------RMVLLAFGAELV-LTDP 69
++ E +G G+ A AA G +I M A +ER RM LL GAE+V +T
Sbjct: 106 IIAETGAGQHGVATATAAALFGLECVIYMGAE-DVERQALNVFRMRLL--GAEVVPVTSG 162
Query: 70 ARGMKGAVQKAEEIRDKTPN----SYVLQQFENPANP---------KIHYETTGPEIWKG 116
+ +K A+ +A +RD N Y++ P +P + E +I +
Sbjct: 163 SGTLKDAINEA--LRDWVTNVEDTHYLIGSAAGP-HPYPTIVRDFQSVIGEEAKAQILEK 219
Query: 117 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 167
G DA+V+ +G G G ++ + ++L GVE +E+ A L+ G+PG
Sbjct: 220 EGRLPDAVVACVGGGSNAIGIFHPFIDD--ESVRLIGVEAAGKGIETGKHAATLTAGRPG 277
Query: 168 -------------------PHKIQGIGAGF-IPGV-LDVNLLDET-----VQISSEEAIE 201
H I AG PGV + L + V I+ EEA+E
Sbjct: 278 VLHGMKTYLLQDEDGQILESHSIS---AGLDYPGVGPEHAYLKDIGRAEYVSITDEEALE 334
Query: 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241
+LL+ EG++ + S A A A+++A + ++IVV
Sbjct: 335 AFQLLSRLEGIIPALESSHALAYALKLAPK-LPKDEIIVV 373
|
Length = 396 |
| >gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68
G+ + T GN G G+A+ A G + ++ MP + ER + A GAE +TD
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITD 166
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 47/244 (19%)
Query: 24 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAVQKAE 81
GN G+ +A+ AAA G + +P + + L A GAE+V+ A ++ A A
Sbjct: 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAA 136
Query: 82 EIRDKTPNSYVLQQFENPANPKIH-YETTGPEIWKGTG----------GKIDALVSGIGT 130
E + L H Y+ PE+ G G +D ++ +G
Sbjct: 137 E-------TGALL---------CHAYDQ--PEVLAGAGTLGLEIEEQAPGVDTVLVAVGG 178
Query: 131 GGTVTGAGKYLKEHNPEIKLYGVEPVES----AVLSGGKPGPHKIQGIGAGFIP----GV 182
GG + G + + ++ VEP + A L+ G+P + GI A + G
Sbjct: 179 GGLIAGIAAWFEGR---ARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGE 235
Query: 183 LDVNLLDETVQIS---SEEAIETAKLLALKEGLLVGISSGAATA-AAIQIAKRPENAGKL 238
+ L V S S+EAI A+ AL E L + + GAATA AA+ G+
Sbjct: 236 IAFALARAHVVTSVLVSDEAIIAAR-RALWEELRLAVEPGAATALAALLSGAYVPAPGER 294
Query: 239 IVVV 242
+ VV
Sbjct: 295 VAVV 298
|
Length = 310 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 270 | |||
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 99.97 | |
| PRK09225 | 462 | threonine synthase; Validated | 99.96 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 99.95 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 99.95 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 99.91 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 99.89 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.86 | |
| KOG2616 | 266 | consensus Pyridoxalphosphate-dependent enzyme/pred | 94.15 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 90.41 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.03 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.81 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.75 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.44 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.71 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 86.68 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 86.58 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.5 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 86.46 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 86.45 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 86.28 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 86.16 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 85.53 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 85.35 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 85.34 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 85.14 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.71 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.35 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 83.93 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 83.14 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.99 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.55 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 82.47 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 82.39 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 82.34 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 82.25 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 82.21 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 81.99 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 81.75 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.54 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 81.41 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 81.38 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 81.06 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 80.82 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 80.8 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.57 |
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=405.04 Aligned_cols=270 Identities=92% Similarity=1.369 Sum_probs=249.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..++++|.+.||.++||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++.+.+
T Consensus 53 ~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a 132 (322)
T PLN02565 53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKA 132 (322)
T ss_pred HHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHH
Confidence 47789999999999778999999999999999999999999999999999999999999999999998754567888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.++.|+++||+|+.|+..||+|+++||++|+++.||+||+|+|+||+++|++.+||+.+|++|||+|||+++++
T Consensus 133 ~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~ 212 (322)
T PLN02565 133 EEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAV 212 (322)
T ss_pred HHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcc
Confidence 99888766789999999999988899999999999997679999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.++++.++.+++++.+..|..+..+++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 213 ~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV 292 (322)
T PLN02565 213 LSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIV 292 (322)
T ss_pred ccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEE
Confidence 88777777788999887667777778899999999999999999999999999999999999999999876645678999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~~~ 270 (270)
+++||+|.||+++++|+.+..+.++|.+++
T Consensus 293 ~v~~d~G~ky~~~~~~~~~~~~~~~~~~~~ 322 (322)
T PLN02565 293 VIFPSFGERYLSSVLFESVKKEAENMVFEP 322 (322)
T ss_pred EEECCCccccCCchhhHHHHHHHhcCccCC
Confidence 999999999999999999999999998865
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=392.05 Aligned_cols=249 Identities=61% Similarity=1.016 Sum_probs=236.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG-MKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~-~~~~~~~ 79 (270)
||++|+++|+|+||. +||++||||+|++||+.|+.+|+++++|||++.+.+|+++|++|||+|+.++...+ +..+.++
T Consensus 49 mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~ 127 (300)
T COG0031 49 MIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIER 127 (300)
T ss_pred HHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHH
Confidence 789999999999997 69999999999999999999999999999999999999999999999999998444 7889999
Q ss_pred HHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 80 AEEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 80 a~~~~~~~~~-~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
+++++++.++ .++.+||+||.||.+||.|++.||++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|
T Consensus 128 a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 128 AKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred HHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 9999999887 677889999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCe
Q 024252 159 AVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 238 (270)
Q Consensus 159 ~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~ 238 (270)
+.+..+. .++.++||+.+++|.+++.+.+|+++.|+|+++++.+|+|+++||+++++|||+++++++++.++.. ++++
T Consensus 208 ~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~-~g~~ 285 (300)
T COG0031 208 VLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKT 285 (300)
T ss_pred cccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC-CCCe
Confidence 9887666 8899999999999988999999999999999999999999999999999999999999999988764 6899
Q ss_pred EEEEecCCCCCCcc
Q 024252 239 IVVVFPSFGERYLS 252 (270)
Q Consensus 239 vv~i~t~gg~~~~~ 252 (270)
||+|+||+|+||++
T Consensus 286 IVti~pD~G~RYls 299 (300)
T COG0031 286 IVTILPDSGERYLS 299 (300)
T ss_pred EEEEECCCcccccC
Confidence 99999999999997
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=397.68 Aligned_cols=269 Identities=63% Similarity=1.058 Sum_probs=244.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+.++..|+++|+.|||+|+.++...++...++.+
T Consensus 97 ~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a 176 (368)
T PLN02556 97 MIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKA 176 (368)
T ss_pred HHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHH
Confidence 57899999999999889999999999999999999999999999999999999999999999999998644455778888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+++++.++++|++||+||.++..||.++++||++|+.+.+|+||+|+|||||++|+++++|+.+|++|||+|||.+++.
T Consensus 177 ~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~ 256 (368)
T PLN02556 177 YELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNV 256 (368)
T ss_pred HHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCcc
Confidence 88888877889999999999966799999999999986689999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+++++.+..|..++++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 257 ~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV 336 (368)
T PLN02556 257 LNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIV 336 (368)
T ss_pred ccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEE
Confidence 87777777777888777667777788999999999999999999999999999999999999999988776544688999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~~ 269 (270)
+|+||+|.||+++.+|++|..+.+.|-..
T Consensus 337 ~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 337 TVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred EEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 99999999999999999999888877543
|
|
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=384.81 Aligned_cols=267 Identities=69% Similarity=1.085 Sum_probs=239.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|+++|++.||.++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++++.|||+|+.++...+.+++.+.+
T Consensus 55 ~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a 134 (323)
T PLN00011 55 MIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKA 134 (323)
T ss_pred HHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHH
Confidence 57789999999999778999999999999999999999999999999999999999999999999999754445667788
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|+++++|+++|++|||+|||+++++
T Consensus 135 ~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~ 214 (323)
T PLN00011 135 EEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAV 214 (323)
T ss_pred HHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc
Confidence 88888766788999999998877799999999999996689999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+++++.+..|..+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 215 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv 294 (323)
T PLN00011 215 LSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIV 294 (323)
T ss_pred cCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEE
Confidence 87777777778888877667767778899999999999999999999999999999999999999998776544678999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMV 267 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~ 267 (270)
+|+||+|+||+|+.+|+.+..+-.++|
T Consensus 295 ~i~~d~G~ky~~~~~~~~~~~~~~~~~ 321 (323)
T PLN00011 295 VIFPSGGERYLSTKLFESVRYEAENLP 321 (323)
T ss_pred EEECCCccccCChhhhHHHHHhhhcCC
Confidence 999999999999999997665445544
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=390.41 Aligned_cols=254 Identities=72% Similarity=1.149 Sum_probs=233.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|+++||.++||++||||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..++.++++.+
T Consensus 161 ~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A 240 (429)
T PLN03013 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKA 240 (429)
T ss_pred HHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 57889999999999778999999999999999999999999999999999999999999999999998755567888899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++||++||+||.|+..||+|+++||++|++++||+||+|+|+||+++|+++++|+.+|++|||+|||.+++.
T Consensus 241 ~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~ 320 (429)
T PLN03013 241 EEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDI 320 (429)
T ss_pred HHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCch
Confidence 99988866789999999999977799999999999997789999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE-
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI- 239 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v- 239 (270)
+.++++.++.++|++.+.+|+.++..++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++|
T Consensus 321 l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IV 400 (429)
T PLN03013 321 LSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400 (429)
T ss_pred hhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEE
Confidence 8777777788899998887888888899999999999999999999999999999999999999999876554456765
Q ss_pred EEEecCCCCCCcchh
Q 024252 240 VVVFPSFGERYLSSV 254 (270)
Q Consensus 240 v~i~t~gg~~~~~~~ 254 (270)
++|++++|++|.+..
T Consensus 401 v~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 401 VSLFASGRDIYTPRC 415 (429)
T ss_pred EEEcCCCchhchhhh
Confidence 667788999999974
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=373.21 Aligned_cols=255 Identities=65% Similarity=1.073 Sum_probs=230.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|..++++|.+.+|. +|+++|+||||+|+|++|+++|++|+||||+++++.|+++|+.+||+|+.++++.+++++.+.+
T Consensus 45 ~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 123 (299)
T TIGR01136 45 MIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKA 123 (299)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 467889999988875 6999999999999999999999999999999999999999999999999999754578888999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++++++||+|+.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|++.+|.+|||+|||.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~ 203 (299)
T TIGR01136 124 EELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV 203 (299)
T ss_pred HHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc
Confidence 99888765678999999998878899999999999997679999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+.+++.+..|+.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv 283 (299)
T TIGR01136 204 LSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIV 283 (299)
T ss_pred ccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEE
Confidence 87666655567777776677778888999999999999999999999999999999999999999998876444689999
Q ss_pred EEecCCCCCCcchhhc
Q 024252 241 VVFPSFGERYLSSVLF 256 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~ 256 (270)
+|+||+|.||+++..|
T Consensus 284 ~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 284 AILPDTGERYLSTGLF 299 (299)
T ss_pred EEECCCCccccCcccC
Confidence 9999999999997554
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=370.91 Aligned_cols=254 Identities=67% Similarity=1.085 Sum_probs=228.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|+++|.+.+|. +|+++|+||||+|+|++|+++|++|+||+|+++++.|++.|+.+||+|+.++++.++.++.+.+
T Consensus 44 ~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 122 (298)
T TIGR01139 44 MIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKA 122 (298)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Confidence 467899999988875 5999999999999999999999999999999999999999999999999999754456778888
Q ss_pred HHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 81 EEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
++++++.++ +++++||+||.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|+++.|++|||+|||.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~ 202 (298)
T TIGR01139 123 EEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESP 202 (298)
T ss_pred HHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCc
Confidence 888887644 5589999999988889999999999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
++...++..+.+++++.+..|..+.+..+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++.. ++++|
T Consensus 203 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~-~~~~v 281 (298)
T TIGR01139 203 VLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-PDKLI 281 (298)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcC-CCCEE
Confidence 88766666677778877666777778889999999999999999999999999999999999999999876642 67899
Q ss_pred EEEecCCCCCCcchhhc
Q 024252 240 VVVFPSFGERYLSSVLF 256 (270)
Q Consensus 240 v~i~t~gg~~~~~~~~~ 256 (270)
|+++||+|.||+++..|
T Consensus 282 v~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 282 VVILPSTGERYLSTPLF 298 (298)
T ss_pred EEEECCCCccccCcccC
Confidence 99999999999997543
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=367.80 Aligned_cols=266 Identities=68% Similarity=1.117 Sum_probs=250.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH---HH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~---~~ 77 (270)
||.+|+++|.+.||.++|+++||||+|.++|++|+..|++|+++||++.+.+|+..|++|||+|+.++....+.. +.
T Consensus 90 Mi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai 169 (362)
T KOG1252|consen 90 MIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAI 169 (362)
T ss_pred HHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999997665665 78
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
..+.++..+.++.|.++||.||.|+..||.+++.||+.|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|+|..
T Consensus 170 ~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 170 GKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred HHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCc
Confidence 88999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CccccCCCCCC--cccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCC
Q 024252 158 SAVLSGGKPGP--HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA 235 (270)
Q Consensus 158 ~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~ 235 (270)
+..+....+.+ +.++|||.++.|..++...+|+.+.+.++|++.+.++|+.++|++++.|||++++++++++++.+..
T Consensus 250 S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~ 329 (362)
T KOG1252|consen 250 SIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENA 329 (362)
T ss_pred ceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccC
Confidence 98887777766 8999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred CCeEEEEecCCCCCCcchhhcHHHHHhhhcC
Q 024252 236 GKLIVVVFPSFGERYLSSVLFESVKKEAESM 266 (270)
Q Consensus 236 ~~~vv~i~t~gg~~~~~~~~~~~~~~~~~~~ 266 (270)
++-+|++++++|.+|+++.+||+|..+...|
T Consensus 330 ~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 330 GKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred CcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 6666665589999999999999998886654
|
|
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=362.45 Aligned_cols=246 Identities=46% Similarity=0.797 Sum_probs=216.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||||+.+++.|++.|+.|||+|+.++...+++++.+.+
T Consensus 50 ~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 128 (296)
T PRK11761 50 MIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLA 128 (296)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 477899999999885 6999999999999999999999999999999999999999999999999999754678888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
+++.++. +++|++||+|+.++..||+|+++||++|+++.+|+||+|+|+||+++|++++||+++|++|||+|||.++++
T Consensus 129 ~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~ 207 (296)
T PRK11761 129 LQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSS 207 (296)
T ss_pred HHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 8887776 788999999999888899999999999997679999999999999999999999999999999999998876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.+ +.+......+..++...+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++ .++++||
T Consensus 208 i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV 278 (296)
T PRK11761 208 IPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIV 278 (296)
T ss_pred CcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEE
Confidence 632 1111122234445567889999999999999999999999999999999999999998765 3578999
Q ss_pred EEecCCCCCCcchhhcH
Q 024252 241 VVFPSFGERYLSSVLFE 257 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~ 257 (270)
+|+||+|.||+++..|+
T Consensus 279 ~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 279 AIICDRGDRYLSTGVFP 295 (296)
T ss_pred EEECCCCcccCChhccc
Confidence 99999999999985554
|
|
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=367.64 Aligned_cols=260 Identities=45% Similarity=0.724 Sum_probs=222.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-----C-hH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----G-MK 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-----~-~~ 74 (270)
+|.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||+|+.+++.|+++++.|||+|+.+++.. + .+
T Consensus 51 ~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~ 129 (330)
T PRK10717 51 IIWDAEKRGLLKPGG-TIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVK 129 (330)
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHH
Confidence 467899999998874 6999999999999999999999999999999999999999999999999998631 1 12
Q ss_pred HHHHHHHHHHHhC-CCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 75 GAVQKAEEIRDKT-PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 75 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
.+.+.++++.++. .+++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++|+++.|++||++|
T Consensus 130 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 130 GAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred HHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 2344445554443 268899999999886789999999999999767999999999999999999999999999999999
Q ss_pred ecCCCcccc---CCC---CCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 154 EPVESAVLS---GGK---PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 154 ~~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
||++++... .++ ...+.+++++.+..++.+....+|+++.|+|+|+++++++|++++|+++||+||++++++++
T Consensus 210 ep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~ 289 (330)
T PRK10717 210 DPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALR 289 (330)
T ss_pred cCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHH
Confidence 999985432 122 23456778887766666666778999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 228 IAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 228 ~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+.++. .++++||+|+||+|+||++.++.|+|...
T Consensus 290 l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~ 323 (330)
T PRK10717 290 LAREL-GPGHTIVTILCDSGERYQSKLFNPDFLRE 323 (330)
T ss_pred HHHhc-CCCCEEEEEECCCchhhcccccCHHHHHh
Confidence 87653 46789999999999999999888888764
|
|
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=356.72 Aligned_cols=245 Identities=44% Similarity=0.814 Sum_probs=215.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||+|++.++.|++.|+.|||+|+.++...+++++.+.+
T Consensus 46 ~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a 124 (290)
T TIGR01138 46 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLA 124 (290)
T ss_pred HHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Confidence 477899999999885 6999999999999999999999999999999999999999999999999998754578888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++. +.+|++||+|+.++..||+++++||++|++++||+||+|+|+||+++|++.+||+++|++|||+|||.+++.
T Consensus 125 ~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~ 203 (290)
T TIGR01138 125 LELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS 203 (290)
T ss_pred HHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Confidence 9998886 446889999999977789999999999997679999999999999999999999999999999999999876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.+ +.+++.+..|..+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||
T Consensus 204 ~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~--~~~~vv 274 (290)
T TIGR01138 204 IPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL--PDAVVV 274 (290)
T ss_pred ccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC--CCCeEE
Confidence 532 12233333444456677899999999999999999999999999999999999999987653 578999
Q ss_pred EEecCCCCCCcchhhc
Q 024252 241 VVFPSFGERYLSSVLF 256 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~ 256 (270)
+|+||+|.||+++.+|
T Consensus 275 ~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 275 AIICDRGDRYLSTGVF 290 (290)
T ss_pred EEECCCCccccCcccC
Confidence 9999999999997443
|
Alternate name: O-acetylserine (thiol)-lyase |
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=368.15 Aligned_cols=260 Identities=33% Similarity=0.534 Sum_probs=220.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC-----CCChH-
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-----ARGMK- 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~-----~~~~~- 74 (270)
||.+|+++|+++||. +|+++||||||+++|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ .+++.
T Consensus 91 ~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~ 169 (423)
T PLN02356 91 IIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVN 169 (423)
T ss_pred HHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHH
Confidence 578899999998875 58889999999999999999999999999999999999999999999999964 12221
Q ss_pred HHH---HHHHHHHHh--------------------------------CCCccccCCCCCCCchhhhhhchHHHHHHhhCC
Q 024252 75 GAV---QKAEEIRDK--------------------------------TPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119 (270)
Q Consensus 75 ~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~ 119 (270)
.+. +.+.+++++ .++.+|++||+|+.++..|+..+|+||++|+++
T Consensus 170 ~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g 249 (423)
T PLN02356 170 IARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQG 249 (423)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCC
Confidence 111 233444332 146789999999998777666669999999976
Q ss_pred CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc-------------CCC----CCCcccccCCCCCCccc
Q 024252 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGV 182 (270)
Q Consensus 120 ~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~ 182 (270)
.||+||+|+|||||++|+++++|+++|++||++|||.+++.+. .++ +.++.++|++.+..|..
T Consensus 250 ~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~ 329 (423)
T PLN02356 250 NLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQN 329 (423)
T ss_pred CCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChh
Confidence 8999999999999999999999999999999999999876331 122 12467889988877888
Q ss_pred cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 183 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 183 ~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+....+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. .++++||+|+||+|.||++++++++|..+
T Consensus 330 ~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~ 408 (423)
T PLN02356 330 FLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQ 408 (423)
T ss_pred HhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHh
Confidence 88889999999999999999999999999999999999999999987653 36889999999999999999888877765
|
|
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=355.91 Aligned_cols=249 Identities=62% Similarity=1.027 Sum_probs=221.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQK 79 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~--~~~~~~~~ 79 (270)
|..|.++|.+++|. +|+++|+||||+|+|++|+++|++|+||+|+++++.|+++++.+||+|+.++... +++++.+.
T Consensus 41 l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~ 119 (291)
T cd01561 41 IEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119 (291)
T ss_pred HHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHH
Confidence 66788899887774 6999999999999999999999999999999999999999999999999999742 34778888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
+++++++.++++|++||+||.++..+++|+++||++|++..||+||+|+|+||+++|++.+|+++.|.++||+|||.+++
T Consensus 120 a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~ 199 (291)
T cd01561 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSV 199 (291)
T ss_pred HHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCc
Confidence 88888776578999999999984434459999999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
++.......+.+++++.+..++.+.+.++|+++.|+|+|++++++.|++++|+++||++|+++++++++.++.. ++++|
T Consensus 200 ~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~v 278 (291)
T cd01561 200 LFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTI 278 (291)
T ss_pred ccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeE
Confidence 87544445667788887766777777899999999999999999999999999999999999999999877653 67899
Q ss_pred EEEecCCCCCCcc
Q 024252 240 VVVFPSFGERYLS 252 (270)
Q Consensus 240 v~i~t~gg~~~~~ 252 (270)
|+|+||+|.||++
T Consensus 279 v~v~~~~g~ky~~ 291 (291)
T cd01561 279 VTILPDSGERYLS 291 (291)
T ss_pred EEEECCCccccCC
Confidence 9999999999975
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=374.29 Aligned_cols=260 Identities=43% Similarity=0.713 Sum_probs=225.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~---~~~ 77 (270)
||.+|+++|.+++| ++||++|+||||+|+|++|+++|++|+||+|+++++.|+..++.|||+|+.+++...++ ...
T Consensus 49 ~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~ 127 (454)
T TIGR01137 49 MIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHI 127 (454)
T ss_pred HHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHH
Confidence 47789999999998 46999999999999999999999999999999999999999999999999998642232 235
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
+.+.++.++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.++|+.+|.+||++|||++
T Consensus 128 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 128 GVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred HHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 56777777654678889999999977899999999999997679999999999999999999999999999999999998
Q ss_pred CccccCCC------CCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhc
Q 024252 158 SAVLSGGK------PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 231 (270)
Q Consensus 158 ~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~ 231 (270)
++.. .+. ...+.+++++.+..|+.+.++++|+++.|+|+|++++++.|++++|+++||+||++++++++++++
T Consensus 208 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~ 286 (454)
T TIGR01137 208 SILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAED 286 (454)
T ss_pred Cccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHh
Confidence 8633 221 113456777766566677788899999999999999999999999999999999999999998774
Q ss_pred CCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 232 PENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 232 ~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
...++++||+++||+|.||++++++++|...
T Consensus 287 ~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~ 317 (454)
T TIGR01137 287 ELTEDQVIVVLLPDSIRNYMTKFLNDEWMKD 317 (454)
T ss_pred hcCCCCEEEEEECCCCccccCcccChHHHHh
Confidence 2246789999999999999999888887653
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=349.44 Aligned_cols=230 Identities=24% Similarity=0.327 Sum_probs=207.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|+|++||||.++|..|++.++.|||+|++++. +|+++.+.++++++++ ++.|++||
T Consensus 76 gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pf 152 (347)
T COG1171 76 GVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPF 152 (347)
T ss_pred ceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCC
Confidence 59999999999999999999999999999999999999999999999999995 6899999999999998 89999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CC-CC-----
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GG-KP----- 166 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~-~~----- 166 (270)
++|+. ++||+|+++||++|++..||+||||+|+||+++|++.++|.+.|++|||||||++++++. .| .+
T Consensus 153 D~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~ 231 (347)
T COG1171 153 DDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPD 231 (347)
T ss_pred CCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCC
Confidence 99998 899999999999999655799999999999999999999999999999999999998775 34 22
Q ss_pred CCcccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+.++|+++. ..++.+.++++|+++.|+|+|+.++|+++++++++++||+++++++++++...+. .++++|++|+
T Consensus 232 ~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il 310 (347)
T COG1171 232 VGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL 310 (347)
T ss_pred CCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe
Confidence 23456777653 3567888999999999999999999999999999999999999999999887664 4677788888
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
+|||.++.
T Consensus 311 -SGgN~d~~ 318 (347)
T COG1171 311 -SGGNIDFE 318 (347)
T ss_pred -cCCCCCHH
Confidence 77886665
|
|
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=336.91 Aligned_cols=248 Identities=21% Similarity=0.230 Sum_probs=205.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|+ .+ .++||++|+||||+|+|++|+++|++|+||+|+.+++.|++.|+.|||+|+.+++. .++++.+.+
T Consensus 39 ~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~ 115 (316)
T cd06448 39 LCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLR 115 (316)
T ss_pred HHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHH
Confidence 4677888887 34 45799999999999999999999999999999999999999999999999999863 266667777
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--CCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCC
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVE 157 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~ 157 (270)
++++++.++++|++||+||.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++++|++.+ |+++||+|||++
T Consensus 116 ~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 116 EELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred HHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 787776557899999999988 78999999999999975 59999999999999999999999996 999999999999
Q ss_pred Ccccc----CCCC-----CCcccccCCCCCCcc---ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 158 SAVLS----GGKP-----GPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 158 ~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
++++. .+++ ..+..+|++.+..+. ...++..|+++.|+|+|+++++++|++++||++||+||++++++
T Consensus 195 ~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~ 274 (316)
T cd06448 195 AHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVV 274 (316)
T ss_pred ChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHH
Confidence 97764 2332 124455776654432 33356789999999999999999999999999999999999999
Q ss_pred HHH-----hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 226 IQI-----AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 226 ~~~-----~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
++. .+++. .++++||+|+||+...+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~ 307 (316)
T cd06448 275 YSGKILDLQLEVLLTPLDNVVVVVCGGSNITLE 307 (316)
T ss_pred HhCcchhhhcccccCCCCeEEEEECCCCCCCHH
Confidence 853 22222 4788999999775443444
|
|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=355.10 Aligned_cols=231 Identities=22% Similarity=0.274 Sum_probs=202.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||
T Consensus 159 GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pf 235 (591)
T PLN02550 159 GVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPF 235 (591)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCC
Confidence 39999999999999999999999999999999999999999999999999985 6889999999998886 77899999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC-----
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG----- 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~----- 167 (270)
+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++.
T Consensus 236 ddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~ 314 (591)
T PLN02550 236 DHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQV 314 (591)
T ss_pred CChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCC
Confidence 99987 799999999999999656999999999999999999999999999999999999998774 34331
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+..+|+.... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++||++++.++...++++||+|+
T Consensus 315 ~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vl- 393 (591)
T PLN02550 315 GGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAIT- 393 (591)
T ss_pred CCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEe-
Confidence 23445655432 23445678999999999999999999999999999999999999999998765556788999999
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
+|||-+++
T Consensus 394 sGgNid~~ 401 (591)
T PLN02550 394 SGANMNFD 401 (591)
T ss_pred cCCCCCHH
Confidence 55675555
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=352.05 Aligned_cols=231 Identities=25% Similarity=0.328 Sum_probs=203.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.+++ +++++.+.+.+++++. +++|++||
T Consensus 87 GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pf 163 (521)
T PRK12483 87 GVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPF 163 (521)
T ss_pred cEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCC
Confidence 49999999999999999999999999999999999999999999999999985 6899999999998886 78999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----C
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----G 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~ 167 (270)
+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++ .
T Consensus 164 dd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~ 242 (521)
T PRK12483 164 DDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQV 242 (521)
T ss_pred CChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCC
Confidence 99998 889999999999999657999999999999999999999999999999999999998764 2332 1
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+.++|++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++|++++.++...++++||+|+
T Consensus 243 ~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Il- 321 (521)
T PRK12483 243 GLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAID- 321 (521)
T ss_pred CceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEe-
Confidence 23456665432 23456678999999999999999999999999999999999999999998766555688999998
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
+|||-+++
T Consensus 322 sGgNid~~ 329 (521)
T PRK12483 322 SGANVNFD 329 (521)
T ss_pred CCCCCCHH
Confidence 55775554
|
|
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=336.68 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=206.4
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|.+.| .++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 95 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a 167 (347)
T PRK08329 95 TVAKLKEEG-----INEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEA 167 (347)
T ss_pred HHHHHHHcC-----CCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 355677766 4579999999999999999999999999999999999999999999999999986 366777788
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEEe
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVE 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV~ 154 (270)
++++++. +++|++++.||.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++|+++. +.+|+|+||
T Consensus 168 ~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq 244 (347)
T PRK08329 168 VKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQ 244 (347)
T ss_pred HHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Confidence 8887775 6788899999987 7899999999999995 79999999999999999999999974 568999999
Q ss_pred cCCCccccC-CCCCCcccccCCCCCCcc-----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHH
Q 024252 155 PVESAVLSG-GKPGPHKIQGIGAGFIPG-----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 228 (270)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~ 228 (270)
|.+++++.. .+...+.+++++.+..+. .+.+++.+.++.|+|+|+++++++|++ +||++||+||+++++++++
T Consensus 245 ~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l 323 (347)
T PRK08329 245 AEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKL 323 (347)
T ss_pred cCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHH
Confidence 999877653 233455667776554332 233567788999999999999999986 7999999999999999999
Q ss_pred hhcCC-CCCCeEEEEecCCCCCCc
Q 024252 229 AKRPE-NAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 229 ~~~~~-~~~~~vv~i~t~gg~~~~ 251 (270)
.+++. .++++||+++||+|.|++
T Consensus 324 ~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 324 LEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHhCCCCCCCeEEEEeCCCCccCC
Confidence 98876 478899999999999975
|
|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=341.85 Aligned_cols=245 Identities=24% Similarity=0.343 Sum_probs=206.6
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.++.++++. ++||++|+||||+++|++|+++|++|+||||+++++.|+++++.|||+|+.++. +++++.+.+.
T Consensus 39 i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~ 112 (380)
T TIGR01127 39 IANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFAT 112 (380)
T ss_pred HHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHH
Confidence 4556666643 369999999999999999999999999999999999999999999999999984 6889999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|.+.|++|||||||.+++++
T Consensus 113 ~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~ 189 (380)
T TIGR01127 113 SLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSM 189 (380)
T ss_pred HHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 998876 7899999999987 7999999999999994 799999999999999999999999999999999999999876
Q ss_pred c----CCCCC-----CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .+++. .+..+|++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++++++..
T Consensus 190 ~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~ 269 (380)
T TIGR01127 190 YESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQK 269 (380)
T ss_pred HHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCc
Confidence 4 34332 23445665332 233455789999999999999999999999999999999999999998643
Q ss_pred hcCCCCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 230 KRPENAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
.. .++++||+|+|| |+.+.+ .++.+.
T Consensus 270 ~~--~~~~~vv~i~sG-Gn~d~d--~l~~vi 295 (380)
T TIGR01127 270 VD--VKGKKIAVVLSG-GNIDLN--LLNKII 295 (380)
T ss_pred cc--cCCCeEEEEeCC-CCCCHH--HHHHHH
Confidence 22 367899999965 785544 454443
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=346.99 Aligned_cols=232 Identities=24% Similarity=0.339 Sum_probs=203.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++|
T Consensus 66 ~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p 142 (499)
T TIGR01124 66 RGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHP 142 (499)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999984 6889999999998886 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ ++||+|+|+||++|++..+|+||+|+|+|||++|++.++|..+|++|||||||.+++++. .+++
T Consensus 143 ~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~ 221 (499)
T TIGR01124 143 FDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQ 221 (499)
T ss_pred CCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCC
Confidence 999987 899999999999999667999999999999999999999999999999999999998764 2332
Q ss_pred CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+.++|++... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++++++++.++...++++||+|+
T Consensus 222 ~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~ 301 (499)
T TIGR01124 222 VGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAIL 301 (499)
T ss_pred CCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEE
Confidence 123446665433 24456678999999999999999999999999999999999999999998776555688999999
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
|| ||-+++
T Consensus 302 sG-~n~~~~ 309 (499)
T TIGR01124 302 SG-ANMNFH 309 (499)
T ss_pred CC-CCCCHH
Confidence 55 664454
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=336.11 Aligned_cols=244 Identities=23% Similarity=0.309 Sum_probs=202.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|.++| .++||++|+||||+|+|++|+++|++|+||+|++ .+..|+.+++.|||+|+.+++ +++++.+.
T Consensus 66 ~i~~a~~~g-----~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~ 138 (351)
T PRK06352 66 AVAKAKEEG-----AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKS 138 (351)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHH
Confidence 456777776 3579999999999999999999999999999997 589999999999999999996 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCC-----eEEEEEe
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-----IKLYGVE 154 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~-----~~vigV~ 154 (270)
+++++++. ++++++ +.||.+ +.||+|+++||++|++..||+||+|+|+||+++|++++||+++|. +|||+||
T Consensus 139 a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Ve 215 (351)
T PRK06352 139 VRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFE 215 (351)
T ss_pred HHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 88888775 666666 458887 689999999999999767999999999999999999999998876 8999999
Q ss_pred cCCCccccCCCCCC---cccccCCCCC-CccccccccC----CcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH
Q 024252 155 PVESAVLSGGKPGP---HKIQGIGAGF-IPGVLDVNLL----DETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226 (270)
Q Consensus 155 ~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~~----~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~ 226 (270)
|++++++..+++.. +..+++..+. ..+....+.+ +.++.|+|+|+++++++|++++||++||+||+++++++
T Consensus 216 p~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~ 295 (351)
T PRK06352 216 AEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVI 295 (351)
T ss_pred eCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHH
Confidence 99998776555431 1223333221 1112222233 34899999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 227 QIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 227 ~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++.+++. .++++||+++||+|+||+++.
T Consensus 296 ~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 296 QHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 9887543 467899999999999999875
|
|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=338.46 Aligned_cols=236 Identities=25% Similarity=0.302 Sum_probs=200.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++|
T Consensus 69 ~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p 145 (403)
T PRK08526 69 HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHP 145 (403)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999985 6899999999998876 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+|+.+ ++||+|+++||++|++ .||+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++
T Consensus 146 ~~~~~~-i~G~gtia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~ 223 (403)
T PRK08526 146 FEDEEV-MAGQGTIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKS 223 (403)
T ss_pred CCCHHH-HhhhHHHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCC
Confidence 999987 8999999999999994 6999999999999999999999999999999999999998763 2332
Q ss_pred CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+..+|++... .++...++++|+++.|+|+|+.+++++|++++|+++||++++++++++..... ..++++||+|+
T Consensus 224 ~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~il 302 (403)
T PRK08526 224 VRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVL 302 (403)
T ss_pred CCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEE
Confidence 234456665432 12233457899999999999999999999999999999999999999752211 13578999999
Q ss_pred cCCCCCCcchhhcHHHH
Q 024252 244 PSFGERYLSSVLFESVK 260 (270)
Q Consensus 244 t~gg~~~~~~~~~~~~~ 260 (270)
+|||.+++ .+.++.
T Consensus 303 -sGGnid~~--~~~~i~ 316 (403)
T PRK08526 303 -SGGNIDVQ--MLNIII 316 (403)
T ss_pred -CCCCCCHH--HHHHHH
Confidence 45896665 444443
|
|
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=339.42 Aligned_cols=245 Identities=20% Similarity=0.231 Sum_probs=206.9
Q ss_pred HHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 5 AEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 5 a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++++|.+.||. ++||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++
T Consensus 131 a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~ 210 (441)
T PRK02991 131 ALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYE 210 (441)
T ss_pred HHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC
Confidence 66888888774 47999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHH
Q 024252 69 PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKY 140 (270)
Q Consensus 69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~~ 140 (270)
+ +|+++.+.+++++++.+++||+++++++.. ++||+|+++||++|+++ .||+||+|+|+||+++|++.+
T Consensus 211 ~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~ 287 (441)
T PRK02991 211 G--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFG 287 (441)
T ss_pred C--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHH
Confidence 5 688999999999887656889999977766 89999999999999963 267999999999999999999
Q ss_pred hhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHH
Q 024252 141 LKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIE 201 (270)
Q Consensus 141 ~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~ 201 (270)
||++ .|++|||+|||.+++++. .+++ ..+.++|++.+.. ++.+.++++|+++.|+|+|+++
T Consensus 288 lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~ 367 (441)
T PRK02991 288 LKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYR 367 (441)
T ss_pred HHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHH
Confidence 9997 688999999999997653 2332 1234566665432 2344567899999999999999
Q ss_pred HHHHHHHHcCCeechhHHHHHHHHHHHhhcCC-------C---CCCeEEEEecCCCCCCcc
Q 024252 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRPE-------N---AGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 202 a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~-------~---~~~~vv~i~t~gg~~~~~ 252 (270)
+++.|++++|+++||++|+++++++++.++.. . ++++||++.|+|..+..+
T Consensus 368 a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~ 428 (441)
T PRK02991 368 LLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE 428 (441)
T ss_pred HHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH
Confidence 99999999999999999999999987654321 1 578999999887765444
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=332.11 Aligned_cols=239 Identities=19% Similarity=0.225 Sum_probs=199.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|.++|.+. ++||++|+||||+++|++|+++|++|+||||+++++.|+++++.|||+|+.++. .+++.+.+
T Consensus 61 ~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a 134 (338)
T PRK06608 61 HLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKA 134 (338)
T ss_pred HHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHH
Confidence 467788888764 469999999999999999999999999999999999999999999999999974 35666666
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++ .++ +++||++||+|+.+ ++||+++++||++|++..||+||+|+|+||+++|++.++|...+++|||+|||.++++
T Consensus 135 ~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~ 211 (338)
T PRK06608 135 KE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAND 211 (338)
T ss_pred HH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChH
Confidence 66 444 47899999999988 6899999999999997679999999999999999999999999999999999999975
Q ss_pred cc----CCCC------CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 161 LS----GGKP------GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 161 ~~----~~~~------~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
+. ++++ ..+..++++.+... +.+. +.+|+++.|+|+|++++++.|++++|+++||+||++++++++
T Consensus 212 ~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~ 290 (338)
T PRK06608 212 AYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVN 290 (338)
T ss_pred HHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHh
Confidence 42 3332 12345566543221 2222 347999999999999999999999999999999999999998
Q ss_pred HhhcCCCCCCeEEEEecCCCCCCc
Q 024252 228 IAKRPENAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 228 ~~~~~~~~~~~vv~i~t~gg~~~~ 251 (270)
+.++. .++++||+|+|| |+++.
T Consensus 291 ~~~~~-~~~~~Vv~v~tg-g~~d~ 312 (338)
T PRK06608 291 WLKTQ-SKPQKLLVILSG-GNIDP 312 (338)
T ss_pred hchhh-cCCCeEEEEeCC-CccCH
Confidence 76543 367899999987 65433
|
|
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=329.79 Aligned_cols=238 Identities=24% Similarity=0.296 Sum_probs=200.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+.|..+ .||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++. +|+++.+.++
T Consensus 72 l~~a~~~~~~~----~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~ 145 (349)
T PRK08813 72 LLAGLERGDER----PVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFAR 145 (349)
T ss_pred HHHHHHcCCCC----eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 56677777543 49999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+||.+ ++||+|+++||++|. ||+||+|+|+||+++|++.++|+ +.+|||+|||++++++
T Consensus 146 ~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~ 218 (349)
T PRK08813 146 ELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSM 218 (349)
T ss_pred HHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchH
Confidence 998886 8899999999998 789999999999874 79999999999999999999996 5699999999999765
Q ss_pred c---CCCC-----CCcccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhh
Q 024252 162 S---GGKP-----GPHKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230 (270)
Q Consensus 162 ~---~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~ 230 (270)
. .+++ ..+.++|++.. ..++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++
T Consensus 219 ~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~-- 296 (349)
T PRK08813 219 ARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV-- 296 (349)
T ss_pred HHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh--
Confidence 3 1221 23456676643 234556678899999999999999999999999999999999999998763
Q ss_pred cCCCCCCeEEEEecCCCCCCcchhhcHHHHH
Q 024252 231 RPENAGKLIVVVFPSFGERYLSSVLFESVKK 261 (270)
Q Consensus 231 ~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~ 261 (270)
++++|++|+ +|||-+++ .+.++..
T Consensus 297 ----~~~~v~~vl-sGgN~d~~--~~~~~~~ 320 (349)
T PRK08813 297 ----SGKRKCAVV-SGGNIDAT--VLATLLS 320 (349)
T ss_pred ----CCCCEEEEE-CCCCCCHH--HHHHHHH
Confidence 467888888 56785554 4444443
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=345.31 Aligned_cols=233 Identities=23% Similarity=0.333 Sum_probs=203.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.++. +|+++.+.+.+++++. +++|++
T Consensus 68 ~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~ 144 (504)
T PRK09224 68 ARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIH 144 (504)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeC
Confidence 3469999999999999999999999999999999999999999999999999985 6899999999998885 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
||+||.+ ++|++|+++||++|++..||+||+|+|+|||++|++.++|.+.|++|||||||.+++++. .+++.
T Consensus 145 ~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~ 223 (504)
T PRK09224 145 PFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLP 223 (504)
T ss_pred CCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCC
Confidence 9999988 799999999999999656999999999999999999999999999999999999998764 23332
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+.+++++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|++++|++++.++...++++||+|
T Consensus 224 ~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i 303 (504)
T PRK09224 224 QVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAI 303 (504)
T ss_pred CCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEE
Confidence 22345655432 2345668899999999999999999999999999999999999999999877655568899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|| ||-+++
T Consensus 304 ~sG-~n~~~~ 312 (504)
T PRK09224 304 LSG-ANMNFD 312 (504)
T ss_pred ECC-CCCCHH
Confidence 965 664444
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=339.64 Aligned_cols=245 Identities=20% Similarity=0.254 Sum_probs=207.5
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..|.+.| .++|+++|+||||+|+|++|+++|++|+||+|++++..|+.+++.|||+|+.+++ +++++.+.+.
T Consensus 129 v~~A~~~g-----~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~ 201 (421)
T PRK07591 129 LTAARELG-----FTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCS 201 (421)
T ss_pred HHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 55677776 4579999999999999999999999999999999999999999999999999996 5788888999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCC-CCEEEEecCCchhHHHHHHHhhhc-------CCCeEEEEE
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGV 153 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~~~~-------~~~~~vigV 153 (270)
+++++.+++++++++.||.. ++|++|+++||++|+++. ||+||+|+|+||+++|++++|+++ .+.+|||+|
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred HHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 98887657888898888887 789999999999999754 999999999999999999999997 578999999
Q ss_pred ecCCCcccc----CCCC------CCcccccCCCCCCc-----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhH
Q 024252 154 EPVESAVLS----GGKP------GPHKIQGIGAGFIP-----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 218 (270)
Q Consensus 154 ~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~s 218 (270)
||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++++||++||++
T Consensus 281 q~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epss 360 (421)
T PRK07591 281 QAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAG 360 (421)
T ss_pred ecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchH
Confidence 999987664 2221 11223344322211 12235677889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 219 GAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 219 g~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++++.+++. .++++||+++||+|+||++.+
T Consensus 361 aaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 361 GVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 999999999988765 478899999999999998753
|
|
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=336.68 Aligned_cols=244 Identities=24% Similarity=0.221 Sum_probs=205.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|++.| .++||++||||||+|+|++|+++|++|+||+|+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 118 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a 190 (394)
T PRK08197 118 GVSRAKELG-----VKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIV 190 (394)
T ss_pred HHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 356677666 4679999999999999999999999999999999999999999999999999996 577888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhc-------CCCeEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYG 152 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~-------~~~~~vig 152 (270)
++++++. ++|+++++.||.+ ++|++|+++||++|+++ .||+||+|+|+||+++|++++|+++ .+.+|+|+
T Consensus 191 ~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~ 268 (394)
T PRK08197 191 AEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVA 268 (394)
T ss_pred HHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEE
Confidence 8888776 7899999999998 78999999999999975 4999999999999999999999997 37899999
Q ss_pred EecCCCcccc----CCCCC-------CcccccCCCCCCc-c----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 153 VEPVESAVLS----GGKPG-------PHKIQGIGAGFIP-G----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 153 V~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~-~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
|||++++++. .++.. .+..+++..+... . ...+++.+.++.|+|+|+++++++|++++||++||
T Consensus 269 Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 348 (394)
T PRK08197 269 VQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACP 348 (394)
T ss_pred EEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECc
Confidence 9999997763 22211 1222333322111 1 11235677899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+||+++++++++.+++. .++++||+++||+|.||.++
T Consensus 349 ssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 349 EGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred hHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 99999999999988765 46789999999999999875
|
|
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=330.83 Aligned_cols=242 Identities=20% Similarity=0.283 Sum_probs=199.5
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+++. .++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++. +++.+.+.++
T Consensus 66 i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~ 139 (328)
T PLN02970 66 IFSLSDDQA----EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAA 139 (328)
T ss_pred HHHhhHhhc----CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHH
Confidence 444554443 3469999999999999999999999999999999999999999999999999996 5778888888
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||.+++++
T Consensus 140 ~la~~~-g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~ 216 (328)
T PLN02970 140 RVQQET-GAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDA 216 (328)
T ss_pred HHHHhc-CCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHH
Confidence 888774 8899999999987 6899999999999995 699999999999999999999999999999999999999866
Q ss_pred c----CCCC-----CCcccccCCCCC--CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhh
Q 024252 162 S----GGKP-----GPHKIQGIGAGF--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230 (270)
Q Consensus 162 ~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~ 230 (270)
. .+++ ..+..++++.+. .++...++++|+++.|+|+|+++++++|++++|+++||++|++++++++...
T Consensus 217 ~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~ 296 (328)
T PLN02970 217 AQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSF 296 (328)
T ss_pred HHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcc
Confidence 3 2322 123344554321 1233456789999999999999999999999999999999999999876433
Q ss_pred c-CC-CC-CCeEEEEecCCCCCCcch
Q 024252 231 R-PE-NA-GKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 231 ~-~~-~~-~~~vv~i~t~gg~~~~~~ 253 (270)
+ +. .+ +++||+++|| |+.+++.
T Consensus 297 ~~~~~~~~~~~vv~v~~G-gn~~~~~ 321 (328)
T PLN02970 297 RSNPAWKGCKNVGIVLSG-GNVDLGV 321 (328)
T ss_pred cccccccCCCeEEEEECC-CCCCHHH
Confidence 2 22 23 4788889855 7866553
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=338.22 Aligned_cols=228 Identities=24% Similarity=0.327 Sum_probs=197.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.||++|+||||+|+|++|+++|++|+||||+.++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||
T Consensus 75 gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~ 151 (406)
T PRK06382 75 GVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAF 151 (406)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCcc
Confidence 49999999999999999999999999999999999999999999999999985 5888999999998886 78999999
Q ss_pred CCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----C
Q 024252 97 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----G 167 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~ 167 (270)
+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|..+|++|||||||.+++++. .+++ .
T Consensus 152 ~~~~~-i~g~~t~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ 229 (406)
T PRK06382 152 NDRWV-ISGQGTIGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSG 229 (406)
T ss_pred CChHH-HHHHHHHHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCC
Confidence 99987 7899999999999994 7999999999999999999999999999999999999998762 3333 2
Q ss_pred CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEec
Q 024252 168 PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 244 (270)
Q Consensus 168 ~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t 244 (270)
.+.++|++.+. .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+++++++... ...++++||+|+|
T Consensus 230 ~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~--~~~~~~~Vv~i~s 307 (406)
T PRK06382 230 VSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGK--VDVKGKKVAIVVS 307 (406)
T ss_pred CCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhcc--ccCCCCEEEEEeC
Confidence 34566776543 234456789999999999999999999999999999999999999876432 1235788999995
Q ss_pred CCCCCCcc
Q 024252 245 SFGERYLS 252 (270)
Q Consensus 245 ~gg~~~~~ 252 (270)
||+.+++
T Consensus 308 -GGn~d~~ 314 (406)
T PRK06382 308 -GGNINPL 314 (406)
T ss_pred -CCCCCHH
Confidence 6885444
|
|
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=328.87 Aligned_cols=230 Identities=21% Similarity=0.293 Sum_probs=195.5
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+.+|++|++|||+++++.|+++++.|||+|+.++. +++++.+.+++++++. +++|++
T Consensus 72 ~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~ 148 (321)
T PRK07048 72 RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIP 148 (321)
T ss_pred CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEEC
Confidence 3469999999999999999999999999999999999999999999999999995 4677778888888876 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc----cCCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~----~~~~~~--- 167 (270)
||+|+.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|+++|++|||+|||++++++ ..++..
T Consensus 149 ~~~~~~~-~~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~ 226 (321)
T PRK07048 149 PYDHPHV-IAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHID 226 (321)
T ss_pred CCCCcch-hhccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCC
Confidence 9999987 7899999999999995 799999999999999999999999999999999999998754 233321
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+..+++.... ..+++..+++|+++.|+|+|+++++++|++++|+++||++++++++++++.++ .++++||+|
T Consensus 227 ~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i 304 (321)
T PRK07048 227 TPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVI 304 (321)
T ss_pred CCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEE
Confidence 12233332211 12234467899999999999999999999999999999999999999987554 367899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+| ||+.+++
T Consensus 305 ~t-GGn~~~~ 313 (321)
T PRK07048 305 IS-GGNVDLA 313 (321)
T ss_pred eC-CCCCCHH
Confidence 96 5786555
|
|
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=328.18 Aligned_cols=246 Identities=23% Similarity=0.294 Sum_probs=203.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|.++| .++||++||||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +++++.+.
T Consensus 66 ~i~~a~~~g-----~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~ 138 (352)
T PRK06721 66 AVAKAKEEG-----SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKA 138 (352)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH
Confidence 356677776 35799999999999999999999999999999974 78999999999999999995 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHH----HHhhhcC-CCeEEEEEe
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG----KYLKEHN-PEIKLYGVE 154 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~----~~~~~~~-~~~~vigV~ 154 (270)
+++++++. ++++++ +.||.+ ..||.|+++||++|++..||+||+|+|+||+++|++ ..+|..+ |.+|||+||
T Consensus 139 a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVe 215 (352)
T PRK06721 139 VRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFE 215 (352)
T ss_pred HHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 88888876 566665 557877 689999999999999767999999999999999854 4555554 889999999
Q ss_pred cCCCccccCCCCC---CcccccCCCCCCccc------cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 155 PVESAVLSGGKPG---PHKIQGIGAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 155 ~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
|++++++..++.. .+..++++.+. |.. ..+.++|+++.|+|+|+++++++|++++|+++||++|++++++
T Consensus 216 p~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~ 294 (352)
T PRK06721 216 AEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGV 294 (352)
T ss_pred cCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHH
Confidence 9999877655431 22334554432 211 1245789999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCCCCcchhhcH
Q 024252 226 IQIAKRPE-NAGKLIVVVFPSFGERYLSSVLFE 257 (270)
Q Consensus 226 ~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~~~~ 257 (270)
+++.+++. .++++||+++||+|.||++....+
T Consensus 295 ~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~ 327 (352)
T PRK06721 295 MKHVQSGKIKKGETVVAVLTGNGLKDPDIAISS 327 (352)
T ss_pred HHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhh
Confidence 99887654 467899999999999999875433
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=337.99 Aligned_cols=232 Identities=23% Similarity=0.333 Sum_probs=199.0
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHHhCCCccccC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-PARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
++||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~ 152 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIP 152 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccC
Confidence 46999999999999999999999999999999999999999999999754321 1246899999999998886 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCC--CCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC--
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGK--IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~--~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-- 166 (270)
||+||.+ ++||+|+++||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++
T Consensus 153 ~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 231 (420)
T PRK08639 153 PFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVT 231 (420)
T ss_pred CCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCcee
Confidence 9999987 789999999999999755 999999999999999999999999999999999999998764 2332
Q ss_pred ---CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 167 ---GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 167 ---~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
..+.++|++.... ++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++.++ .++++||
T Consensus 232 ~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv 309 (420)
T PRK08639 232 LEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVV 309 (420)
T ss_pred CCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEE
Confidence 2344567765432 3345578899999999999999999999999999999999999999886543 3688999
Q ss_pred EEecCCCCCCcc
Q 024252 241 VVFPSFGERYLS 252 (270)
Q Consensus 241 ~i~t~gg~~~~~ 252 (270)
+|+| ||+.+++
T Consensus 310 ~v~s-Ggn~d~~ 320 (420)
T PRK08639 310 CVIS-GGNNDIE 320 (420)
T ss_pred EEeC-CCCCCHH
Confidence 9995 5886655
|
|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=337.13 Aligned_cols=230 Identities=26% Similarity=0.394 Sum_probs=199.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++.+.+.+++++. +++|++
T Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 146 (404)
T PRK08198 70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVH 146 (404)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecC
Confidence 4579999999999999999999999999999999999999999999999999984 6889999999998886 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
||+||.+ +.||+|+|+||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||.+++++. .+++.
T Consensus 147 ~~~~~~~-~~g~~t~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~ 224 (404)
T PRK08198 147 PFDDPDV-IAGQGTIGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELE 224 (404)
T ss_pred CCCCccH-HHHHHHHHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecC
Confidence 9999987 7899999999999994 6999999999999999999999999999999999999998763 23332
Q ss_pred --CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+..++++... .++.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++++++++... .++++||++
T Consensus 225 ~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~v 302 (404)
T PRK08198 225 SVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAV 302 (404)
T ss_pred CCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEE
Confidence 22344554322 23445578999999999999999999999999999999999999999886522 467899999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|+ |+.+++
T Consensus 303 l~g-gn~~~~ 311 (404)
T PRK08198 303 LSG-GNIDVL 311 (404)
T ss_pred ECC-CCCCHH
Confidence 965 776655
|
|
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=329.09 Aligned_cols=245 Identities=22% Similarity=0.276 Sum_probs=204.1
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.++.++|...+ .||++|+||||+|+|++|+++|++|+||||++.++.|+++++.|||+|+.+++ +++++.+.+.
T Consensus 60 l~~a~~~~~~~~---~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~ 134 (322)
T PRK06110 60 FDRLARRGPRVR---GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAA 134 (322)
T ss_pred HHHhhhhcCCCc---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 566776775554 49999999999999999999999999999999999999999999999999974 6888888899
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. ++||++|| ||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.++++.+|++|||+|||.+++++
T Consensus 135 ~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~ 210 (322)
T PRK06110 135 RLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAY 210 (322)
T ss_pred HHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHH
Confidence 988876 78999999 5665 6899999999999995 699999999999999999999999999999999999999876
Q ss_pred c----CCCCC-----CcccccCCCCCC-c--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .+++. .+..++++.... | +.+.++++|+++.|+|+|+++++++|++++|+++||++++++++++++.
T Consensus 211 ~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~ 290 (322)
T PRK06110 211 ALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQER 290 (322)
T ss_pred HHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhCh
Confidence 3 33322 233345443221 2 2233588999999999999999999999999999999999999999865
Q ss_pred hcCCCCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 230 KRPENAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
++ .++++||+|+|| |+.+++ .|.++.
T Consensus 291 ~~--~~~~~Vv~i~tG-gn~d~~--~~~~~~ 316 (322)
T PRK06110 291 ER--LAGKRVGLVLSG-GNIDRA--VFARVL 316 (322)
T ss_pred hh--hCCCcEEEEECC-CCCCHH--HHHHHH
Confidence 43 367899999966 887665 444443
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=327.35 Aligned_cols=248 Identities=21% Similarity=0.291 Sum_probs=202.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.++.++|.. ++||++|+||||+|+|++|+++|++|+||+|+++++.|++.|+.|||+|+.++. +++++.+.+
T Consensus 57 ~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a 130 (322)
T PRK07476 57 ALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEV 130 (322)
T ss_pred HHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHH
Confidence 35666776642 249999999999999999999999999999999999999999999999999985 578888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.++.++. +++|++||+||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.+||++.|++|||+|||+++++
T Consensus 131 ~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~ 207 (322)
T PRK07476 131 ERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAA 207 (322)
T ss_pred HHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchH
Confidence 8888776 7799999999998 7899999999999995 69999999999999999999999999999999999998875
Q ss_pred cc----CCCC-----CCcccccCCCCC-----CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH
Q 024252 161 LS----GGKP-----GPHKIQGIGAGF-----IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226 (270)
Q Consensus 161 ~~----~~~~-----~~~~~~gl~~~~-----~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~ 226 (270)
+. .+++ ..+..+++..+. .+..+.+.++|+++.|+|+|+++++++|++++|+++||++++++++++
T Consensus 208 ~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~ 287 (322)
T PRK07476 208 MHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALL 287 (322)
T ss_pred HHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHH
Confidence 53 2322 122334442221 233455678999999999999999999999999999999999999998
Q ss_pred HHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 227 QIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 227 ~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+.. ...++++||+++|++ + +|...+++++.+
T Consensus 288 ~~~--~~~~~~~Vvvi~tGg-~--~~~~~~~~~~~~ 318 (322)
T PRK07476 288 AGK--IAARDGPIVVVVSGA-N--IDMELHRRIING 318 (322)
T ss_pred hCC--cccCCCcEEEEECCC-C--CCHHHHHHHHhh
Confidence 421 112348899999764 5 344456665544
|
|
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=326.35 Aligned_cols=227 Identities=28% Similarity=0.385 Sum_probs=197.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+|+|++|+++|++|+||||..+++.|++.++.+||+|+.+++ +++++...+++++++. +++|++|
T Consensus 69 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~ 145 (317)
T PRK06815 69 QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISP 145 (317)
T ss_pred ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecC
Confidence 469999999999999999999999999999999999999999999999999996 4778888888888775 7889999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccccC----CCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG----GKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~----~~~----- 166 (270)
|+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.+|++++|++|||||||++++++.. +++
T Consensus 146 ~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~ 223 (317)
T PRK06815 146 YNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAE 223 (317)
T ss_pred CCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCC
Confidence 999987 6899999999999995 69999999999999999999999999999999999999987642 232
Q ss_pred CCcccccCCCCCCc----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 167 GPHKIQGIGAGFIP----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 167 ~~~~~~gl~~~~~~----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..+.+++++.+..| +.+.++++|+++.|+|+|+++++++|++++||++||++|+++++++++.++ .++++||+|
T Consensus 224 ~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i 301 (317)
T PRK06815 224 QPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVV 301 (317)
T ss_pred CCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEE
Confidence 12345555433222 234568899999999999999999999999999999999999999987655 367899999
Q ss_pred ecCCCCC
Q 024252 243 FPSFGER 249 (270)
Q Consensus 243 ~t~gg~~ 249 (270)
+||++.+
T Consensus 302 ~tG~~~~ 308 (317)
T PRK06815 302 LCGKNIV 308 (317)
T ss_pred ECCCCCC
Confidence 9887653
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=324.77 Aligned_cols=236 Identities=24% Similarity=0.339 Sum_probs=197.7
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++|+++|+||||+|+|++|+++|++|+||||++.++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++|
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~ 152 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPP 152 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCc
Confidence 469999999999999999999999999999999999999999999999999984 5788888999998886 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCCCc--
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPH-- 169 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~~~-- 169 (270)
|+||.+ +.||+++++||++|+ ++||+||+|+|+||+++|++.+||+.+|++|||+|||.+++++. .+++...
T Consensus 153 ~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~ 230 (333)
T PRK08638 153 YDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRT 230 (333)
T ss_pred CCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCC
Confidence 999988 789999999999999 46999999999999999999999999999999999999987643 3443322
Q ss_pred ---ccccCCCCCCccccc----cccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 170 ---KIQGIGAGFIPGVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 170 ---~~~gl~~~~~~~~~~----~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..++++.. .|..+. ++++|+++.|+|+|+++++++|++++|+++||++|++++++.....+...++++||+|
T Consensus 231 ~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v 309 (333)
T PRK08638 231 TGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAI 309 (333)
T ss_pred CCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEE
Confidence 22343322 233332 5789999999999999999999999999999998888888765322222467889999
Q ss_pred ecCCCCCCcchhhcHHHH
Q 024252 243 FPSFGERYLSSVLFESVK 260 (270)
Q Consensus 243 ~t~gg~~~~~~~~~~~~~ 260 (270)
+| ||+.+++ .++++.
T Consensus 310 ~~-Ggn~~~~--~~~~~~ 324 (333)
T PRK08638 310 IS-GGNVDLS--RVSQIT 324 (333)
T ss_pred EC-CCCCCHH--HHHHHH
Confidence 96 5898777 344443
|
|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=338.76 Aligned_cols=229 Identities=24% Similarity=0.325 Sum_probs=200.6
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
+.||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.+++ +++++.+.+++++++. +++|++|
T Consensus 72 ~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~ 148 (403)
T PRK07334 72 RGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHP 148 (403)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCC
Confidence 359999999999999999999999999999999999999999999999999984 6888999999998875 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccccC---CCC----CC
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GKP----GP 168 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~---~~~----~~ 168 (270)
|+||.+ +.||+|+++||++|+ +.||+||+|+|+|||++|+++++|+++|++||++|||++++++.. +.. ..
T Consensus 149 ~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~ 226 (403)
T PRK07334 149 YDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGS 226 (403)
T ss_pred CCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCC
Confidence 999987 799999999999999 479999999999999999999999999999999999999987642 211 23
Q ss_pred cccccCCCC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 024252 169 HKIQGIGAG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPS 245 (270)
Q Consensus 169 ~~~~gl~~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~ 245 (270)
+.+++++.+ ..|+.+.+.++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+++||
T Consensus 227 ~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~g 304 (403)
T PRK07334 227 TIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSG 304 (403)
T ss_pred CccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECC
Confidence 456777643 345566778999999999999999999999999999999999999999876543 367899999977
Q ss_pred CCCCCcc
Q 024252 246 FGERYLS 252 (270)
Q Consensus 246 gg~~~~~ 252 (270)
|+.+.+
T Consensus 305 -gn~d~~ 310 (403)
T PRK07334 305 -GNIDTR 310 (403)
T ss_pred -CCCCHH
Confidence 565444
|
|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=333.87 Aligned_cols=230 Identities=21% Similarity=0.286 Sum_probs=198.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHHHhCCCccc
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL---VLTDPARGMKGAVQKAEEIRDKTPNSYV 92 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (270)
++||++|+||||+++|++|+++|++|+||||+.+++.|++.++.|||+| +.++ .+++++.+.+.+++++. +++|
T Consensus 65 ~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~ 141 (409)
T TIGR02079 65 KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTF 141 (409)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEE
Confidence 3599999999999999999999999999999999999999999999974 3444 36889999999998886 7899
Q ss_pred cCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC--
Q 024252 93 LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-- 166 (270)
Q Consensus 93 ~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-- 166 (270)
++||+||.+ +.||+|+++||++|+++.||+||+|+|+||+++|++.++|+++|++|||||||++++++. .+++
T Consensus 142 ~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 220 (409)
T TIGR02079 142 IPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVT 220 (409)
T ss_pred eCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcee
Confidence 999999987 789999999999999767999999999999999999999999999999999999998764 2433
Q ss_pred ---CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 167 ---GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 167 ---~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
..+.++|++...++ +.+.++++|+++.|+|+|+.+++++|++++|+++||++|+++|+++++.++ .++++||
T Consensus 221 ~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv 298 (409)
T TIGR02079 221 LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVV 298 (409)
T ss_pred cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEE
Confidence 12445666654322 234567899999999999999999999999999999999999999887543 4688999
Q ss_pred EEecCCCCCCcc
Q 024252 241 VVFPSFGERYLS 252 (270)
Q Consensus 241 ~i~t~gg~~~~~ 252 (270)
+|+| |||.+++
T Consensus 299 ~ils-Ggn~d~~ 309 (409)
T TIGR02079 299 CVVS-GGNNDIE 309 (409)
T ss_pred EEEC-CCCCCHH
Confidence 9995 5886555
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=326.03 Aligned_cols=243 Identities=23% Similarity=0.306 Sum_probs=203.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+++++| .++||++||||||+++|++|+++|++|+||||+. .++.|++.++.|||+|+.+++ +++++.+.
T Consensus 69 ~l~~a~~~g-----~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~ 141 (353)
T PRK07409 69 AVTKAKEEG-----AKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEI 141 (353)
T ss_pred HHHHHHHCC-----CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHH
Confidence 466777766 3579999999999999999999999999999997 588999999999999999996 57888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
++++.++. +++++++ .||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.+|++..+ .+|||+|
T Consensus 142 a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigV 218 (353)
T PRK07409 142 VRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGF 218 (353)
T ss_pred HHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEE
Confidence 99888776 4667665 58887 68999999999999976799999999999999999999998743 4899999
Q ss_pred ecCCCccccCCCCCC---cccccCCCCCCcccc------ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHH
Q 024252 154 EPVESAVLSGGKPGP---HKIQGIGAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAA 224 (270)
Q Consensus 154 ~~~~~~~~~~~~~~~---~~~~gl~~~~~~~~~------~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa 224 (270)
||.+++++..+++.. +..++++.+. |..+ .+++.++++.|+|+|+++++++|++++|+++||++|+++++
T Consensus 219 ep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa 297 (353)
T PRK07409 219 QAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAG 297 (353)
T ss_pred ecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHH
Confidence 999998776554322 2233443322 2222 23456789999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 225 AIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 225 ~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++++.+++. .++++||+++||+|+||++++
T Consensus 298 ~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 298 LLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred HHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 999877643 467899999999999999864
|
|
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=327.76 Aligned_cols=242 Identities=21% Similarity=0.231 Sum_probs=206.1
Q ss_pred HHHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.|+++|.++||. ++||++||||||+++|++|+.+|++|+||||+++++.|++.++.|||+|+.+
T Consensus 125 ~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~ 204 (431)
T TIGR02035 125 LALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEY 204 (431)
T ss_pred HHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 478999998874 5799999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHH
Q 024252 68 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~ 139 (270)
++ +|+++.+.+++++++.++.|+++++ |+.++++||+|+++||++|+++ .||+|++|+|+||+++|++.
T Consensus 205 ~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~ 281 (431)
T TIGR02035 205 ES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAF 281 (431)
T ss_pred CC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHH
Confidence 96 6899999999998887667787774 4455689999999999999952 47899999999999999999
Q ss_pred Hhhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCCc---cccccccCCcEEEcCHHHHH
Q 024252 140 YLKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAI 200 (270)
Q Consensus 140 ~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~ 200 (270)
+||++ +|++|||+|||.+++++. .++. ..+.++||+.+..+ +.+.++++|+++.|+|+|+.
T Consensus 282 ~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~ 361 (431)
T TIGR02035 282 GLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLY 361 (431)
T ss_pred HHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHH
Confidence 99997 789999999999997642 2321 13456777765422 23345689999999999999
Q ss_pred HHHHHHHHHcCCeechhHHHHHHHHHHHhhcC-----------C-CCCCeEEEEecCCCC
Q 024252 201 ETAKLLALKEGLLVGISSGAATAAAIQIAKRP-----------E-NAGKLIVVVFPSFGE 248 (270)
Q Consensus 201 ~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~-----------~-~~~~~vv~i~t~gg~ 248 (270)
+++++|++++|+++||+||++++++.++.+.. . .++.+.+++.|||+.
T Consensus 362 ~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~ 421 (431)
T TIGR02035 362 DLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGM 421 (431)
T ss_pred HHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCC
Confidence 99999999999999999999999999887652 0 146789999988876
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=314.58 Aligned_cols=231 Identities=23% Similarity=0.290 Sum_probs=204.5
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
..||++|.||||+|+|++|+++|+|++||||..+|..|++.++.+||+|++.+. +++++...+.++++++ ++.|++|
T Consensus 115 ~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~p 191 (457)
T KOG1250|consen 115 AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPP 191 (457)
T ss_pred CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCC
Confidence 469999999999999999999999999999999999999999999999999995 7899999999999997 8999999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG---- 167 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~---- 167 (270)
||+|+. ++|++|++.||.+|++.++++|+||||+||+++||+.++++..|+++|||||++++.++. .+++.
T Consensus 192 fDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~ 270 (457)
T KOG1250|consen 192 FDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPK 270 (457)
T ss_pred CCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeeccc
Confidence 999998 799999999999999766679999999999999999999999999999999999998764 34442
Q ss_pred -CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 168 -PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 168 -~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
.+..+|++...+ ++.+.+.++|+++.|+|+|+..++.++.+++..++||++|+++++++.. .....+++++|.++
T Consensus 271 i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~il 349 (457)
T KOG1250|consen 271 ITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSIL 349 (457)
T ss_pred ccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeec
Confidence 344567765432 4556788999999999999999999999999999999999999999987 44447899999999
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
+ |++-+++
T Consensus 350 s-G~n~~~~ 357 (457)
T KOG1250|consen 350 S-GGNIDFD 357 (457)
T ss_pred c-cCCCCcc
Confidence 4 4554444
|
|
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=320.11 Aligned_cols=240 Identities=27% Similarity=0.319 Sum_probs=202.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+++++| .++||++|+||||+|+|++|+.+|++|++|+|+++++.|+++|+.+||+|+.++. +++++.+.+
T Consensus 61 ~l~~a~~~g-----~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a 133 (324)
T cd01563 61 AVSKAKELG-----VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLV 133 (324)
T ss_pred HHHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHH
Confidence 356777766 4579999999999999999999999999999999999999999999999999986 578888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV 153 (270)
.+++++. ++|++||+|+.+ +.||.+++.||++|+++ .||+||+|+|+|||++|++.+||.+. ++++||+|
T Consensus 134 ~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigv 210 (324)
T cd01563 134 RELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGV 210 (324)
T ss_pred HHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEE
Confidence 8888775 788999999998 68999999999999963 69999999999999999999999875 57999999
Q ss_pred ecCCCcccc----CCCC-------CCcccccCCCCCCc-c----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechh
Q 024252 154 EPVESAVLS----GGKP-------GPHKIQGIGAGFIP-G----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS 217 (270)
Q Consensus 154 ~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~-~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~ 217 (270)
||.+++++. .++. ..+..++++.+..+ + .+.+++.++++.|+|+|+++++++|++++|+++||+
T Consensus 211 e~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps 290 (324)
T cd01563 211 QAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPA 290 (324)
T ss_pred ecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCch
Confidence 999987553 2211 12334555443211 1 123456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCC
Q 024252 218 SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERY 250 (270)
Q Consensus 218 sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~ 250 (270)
||+++++++++.+++. .++++||+++||+|.|+
T Consensus 291 sa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 291 SAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 9999999999887653 46789999999999874
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=320.60 Aligned_cols=235 Identities=26% Similarity=0.360 Sum_probs=200.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+++++| + .++||++|+||||+|+|++|+++|++|++|+|++.+..|+++|+.+||+|+.+++ +++++.+.++
T Consensus 56 l~~~~~~~---~-~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~ 129 (304)
T cd01562 56 LLSLSEEE---R-AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKAR 129 (304)
T ss_pred HHhcCHhh---c-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHH
Confidence 45555555 1 2369999999999999999999999999999999999999999999999999996 4888889999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+|+.+ ..||+++++||++|++ .||+||+|+|+|||++|++++||..++++|||+|+|.+++++
T Consensus 130 ~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~ 206 (304)
T cd01562 130 ELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM 206 (304)
T ss_pred HHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence 998886 7899999999987 7899999999999996 499999999999999999999999999999999999998765
Q ss_pred c----CCCCC-----CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .++.. .+...+++.+. .++.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.
T Consensus 207 ~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~ 286 (304)
T cd01562 207 AQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGK 286 (304)
T ss_pred HHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCc
Confidence 3 22221 22334444322 123355678999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCeEEEEecCCC
Q 024252 230 KRPENAGKLIVVVFPSFG 247 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg 247 (270)
++. ++++||+|+|||.
T Consensus 287 ~~~--~~~~vv~i~tGG~ 302 (304)
T cd01562 287 LDL--KGKKVVVVLSGGN 302 (304)
T ss_pred ccc--CCCeEEEEecCCC
Confidence 664 6789999997653
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=319.83 Aligned_cols=224 Identities=21% Similarity=0.295 Sum_probs=192.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++|+||||+|+|++|+++|++|+||||+.+++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++|
T Consensus 68 ~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~ 144 (317)
T TIGR02991 68 AGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPP 144 (317)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCC
Confidence 469999999999999999999999999999999999999999999999999996 5788888888888776 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ ++||+|+++||++|++ .+|+||+|+|+||+++|++++||+++|++|||+|||++++++. .+++
T Consensus 145 ~~n~~~-~~g~~t~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~ 222 (317)
T TIGR02991 145 FDHPDI-VAGQGTLGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAE 222 (317)
T ss_pred CCChHH-HhhHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCC
Confidence 999987 7899999999999994 6899999999999999999999999999999999999887664 2332
Q ss_pred CCcccccCC--CC---CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEE
Q 024252 167 GPHKIQGIG--AG---FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 241 (270)
Q Consensus 167 ~~~~~~gl~--~~---~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~ 241 (270)
.++.+++++ .+ ..++++.++++|+++.|+|+|+++++++|++++|+++||+++++++++++... ..+++||+
T Consensus 223 ~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvv 299 (317)
T TIGR02991 223 LPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAV 299 (317)
T ss_pred CCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEE
Confidence 223444442 11 23455667899999999999999999999999999999999999999974221 24678898
Q ss_pred EecCCCC
Q 024252 242 VFPSFGE 248 (270)
Q Consensus 242 i~t~gg~ 248 (270)
|+|+ |+
T Consensus 300 vltG-~n 305 (317)
T TIGR02991 300 IVSG-RN 305 (317)
T ss_pred EeCC-CC
Confidence 9866 55
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=324.29 Aligned_cols=226 Identities=20% Similarity=0.244 Sum_probs=194.5
Q ss_pred HHHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.|++.|.+.||. ++||++||||||+|+|++|+.+|++|+||||.++++.|++.|+.|||+|+.+
T Consensus 107 ~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v 186 (404)
T cd06447 107 LALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEY 186 (404)
T ss_pred HHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEE
Confidence 588999999985 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC---C-----CCEEEEecCCchhHHHHHH
Q 024252 68 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG---K-----IDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~-----~d~iv~~vG~Gg~~aGi~~ 139 (270)
++ +++++.+.+++++++.++.+|++|++++.. ++||+|+++||++|+++ . ||+||+|+|+||+++|+++
T Consensus 187 ~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~ 263 (404)
T cd06447 187 ET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAF 263 (404)
T ss_pred CC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHH
Confidence 85 688899999999888766788999766654 89999999999999952 3 5589999999999999999
Q ss_pred Hhhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCC---ccccccccCCcEEEcCHHHHH
Q 024252 140 YLKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAI 200 (270)
Q Consensus 140 ~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~ 200 (270)
+||+. .|+++||+|||.+++.+. .+.+ ..+.++|++.+.. ++.+.++++|+++.|+|+|+.
T Consensus 264 ~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~ 343 (404)
T cd06447 264 GLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELY 343 (404)
T ss_pred HHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHH
Confidence 99997 788999999999987652 2221 2244566665432 233446789999999999999
Q ss_pred HHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 201 ETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 201 ~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
+++++|++++|+++||+||+++++++++.++.
T Consensus 344 ~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 344 RLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987653
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=329.55 Aligned_cols=245 Identities=20% Similarity=0.196 Sum_probs=204.4
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|..|.+.|........|+++||||||.|+|++|+.+|++|+||+|++ .+..|+.+++.|||+|+.+++ +|+++.+.+
T Consensus 174 vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a 251 (484)
T PLN02569 174 VSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLI 251 (484)
T ss_pred HHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHH
Confidence 44566666533323579999999999999999999999999999996 788999999999999999996 689999999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCC-CCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV 153 (270)
+++.++. ++|+++++ ||.+ ++||+|+++||++|+++. ||+||+|+|+||+++|++++|+++. +.+|+++|
T Consensus 252 ~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~V 328 (484)
T PLN02569 252 REVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCA 328 (484)
T ss_pred HHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 9988776 68888988 8888 789999999999999764 9999999999999999999999974 45899999
Q ss_pred ecCCCcccc----CCCC-------CCcccccCCCCCCccccc------cccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 154 EPVESAVLS----GGKP-------GPHKIQGIGAGFIPGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 154 ~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~~------~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
|+++++++. .+.. .++.+++++.+. |.... ++.-+.++.|+|+|+++++++ ++++|+++||
T Consensus 329 qa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vep 406 (484)
T PLN02569 329 QAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCP 406 (484)
T ss_pred eeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECc
Confidence 999997764 2221 234456665542 43322 223345799999999999999 8899999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+||+++++++++.+++. .++++||+++|++|.||.+.
T Consensus 407 ssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 407 HTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999999999988764 46789999999999999874
|
|
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=317.55 Aligned_cols=228 Identities=23% Similarity=0.337 Sum_probs=192.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+++|++|+||+|+.+++.|+.+++.|||+|+.+++ +++++.+.+.+++++. +++|++
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 144 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCH 144 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCC
Confidence 4579999999999999999999999999999999999999999999999999985 5778888888888776 889999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCCCcc
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHK 170 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~~~~ 170 (270)
||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .+|||+|||.+++++. .+++....
T Consensus 145 ~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~ 219 (310)
T PRK08246 145 AYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVP 219 (310)
T ss_pred CCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 9999997 789999999999999 4799999999999999999999974 4899999999998764 34443322
Q ss_pred c-----ccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 171 I-----QGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 171 ~-----~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
. ++++.+.. ++.+.++++|+++.|+|+|+++++++|++++|+++||++|++++++++...+. .++++||+|
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~i 298 (310)
T PRK08246 220 VSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAVV 298 (310)
T ss_pred CCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEEE
Confidence 2 23333322 34466788999999999999999999999999999999999999997543321 357889999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|| |+.+++
T Consensus 299 ~~g-~n~d~~ 307 (310)
T PRK08246 299 LCG-ANTDPA 307 (310)
T ss_pred ECC-CCCChh
Confidence 966 665554
|
|
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=295.08 Aligned_cols=231 Identities=24% Similarity=0.342 Sum_probs=200.1
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.+.|++.||||||+|+|++|+..|+|++||||.++|..|+..++.||++|+++++. .+.+.+.+.++.++. +.+.++
T Consensus 73 ~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~ 149 (323)
T KOG1251|consen 73 AKGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIH 149 (323)
T ss_pred cCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeC
Confidence 44699999999999999999999999999999999999999999999999999974 356778889998887 889999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc----cCCCC----
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP---- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~----~~~~~---- 166 (270)
||++|.. +.|++|+++|+++|. +.+|++|+|+|+||+++|++...+.+.|+.+|++|||++.+.- ..++.
T Consensus 150 Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~ 227 (323)
T KOG1251|consen 150 PYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLD 227 (323)
T ss_pred CCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecC
Confidence 9999998 899999999999999 4899999999999999999999999999999999999887532 22322
Q ss_pred -CCcccccCCC---CCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 167 -GPHKIQGIGA---GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 167 -~~~~~~gl~~---~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..+..+|... |..+|++.++++|+++.|+|+|+.++++.++++..+.+||+++.+||+++....+ ...+++.+|
T Consensus 228 tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIi 305 (323)
T KOG1251|consen 228 TPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGII 305 (323)
T ss_pred CchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEE
Confidence 1233445433 2357888899999999999999999999999999999999999999999865433 457889988
Q ss_pred ecCCCCCCcch
Q 024252 243 FPSFGERYLSS 253 (270)
Q Consensus 243 ~t~gg~~~~~~ 253 (270)
+ +|||.++..
T Consensus 306 L-sGGNVD~~~ 315 (323)
T KOG1251|consen 306 L-SGGNVDLNS 315 (323)
T ss_pred E-eCCcccccc
Confidence 8 778876664
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=325.28 Aligned_cols=242 Identities=25% Similarity=0.279 Sum_probs=202.8
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|.+|.++| .++||++||||||+|+|++|+++|++|+||+|++ ++..|+.+++.|||+|+.+++ +++++.+.+
T Consensus 107 v~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a 179 (397)
T PRK06260 107 VTKALELG-----VKTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMV 179 (397)
T ss_pred HHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHH
Confidence 55677666 4579999999999999999999999999999997 789999999999999999996 578888889
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
++++++. ++|+++++ ||.+ +.||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|
T Consensus 180 ~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~V 256 (397)
T PRK06260 180 VELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGI 256 (397)
T ss_pred HHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEE
Confidence 9988876 78888887 8887 78999999999999976 699999999999999999999999763 4899999
Q ss_pred ecCCCcccc----CCCCC-------CcccccCCCCCCcc------ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 154 EPVESAVLS----GGKPG-------PHKIQGIGAGFIPG------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~------~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
||++++++. .+... .+..+++..+. |. .+.++..+.++.|+|+|+++++++|++++|+++||
T Consensus 257 q~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 335 (397)
T PRK06260 257 QAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEP 335 (397)
T ss_pred ecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCc
Confidence 999997663 22221 12223332221 21 12345567899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++|+++++++++.+++. .++++||+++||+|.|+.+.+
T Consensus 336 ssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 336 ASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 99999999999988765 468899999999999987754
|
|
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=316.31 Aligned_cols=237 Identities=22% Similarity=0.266 Sum_probs=194.7
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|+++| .++||++|+||||+|+|++|+.+|++|+||||...+..|+++++.|||+|+.+++ +++++.+.+
T Consensus 54 ~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a 126 (319)
T PRK06381 54 HVRRAMRLG-----YSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERS 126 (319)
T ss_pred HHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHH
Confidence 356777776 4679999999999999999999999999999999999999999999999999996 478888888
Q ss_pred HHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhc------CCCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~------~~~~~vigV 153 (270)
+++.++. ++|+++|++ ||...+.||.|+++||++|++..||+||+|+|+||+++|++++|+++ .|.+||++|
T Consensus 127 ~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigV 205 (319)
T PRK06381 127 RKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGV 205 (319)
T ss_pred HHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEE
Confidence 8888775 788888886 76323789999999999999767999999999999999999999998 789999999
Q ss_pred ecCCCcccc----CCCCC--C---ccccc--CCCCCC-----c----cccccccCCcEEEcCHHHHHHHHHHHHHHcCCe
Q 024252 154 EPVESAVLS----GGKPG--P---HKIQG--IGAGFI-----P----GVLDVNLLDETVQISSEEAIETAKLLALKEGLL 213 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~--~---~~~~g--l~~~~~-----~----~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~ 213 (270)
+|.+++++. .+... . ..+.. +..+.. . ..+..++.++++.|+|+|+++++++|++++||+
T Consensus 206 e~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~ 285 (319)
T PRK06381 206 STSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLN 285 (319)
T ss_pred eeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcc
Confidence 999986553 22211 0 01110 111110 0 113356777999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhhcCCCCCCeEEEEecCC
Q 024252 214 VGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 214 ~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~g 246 (270)
+||++|+++++++++.+++.. +++||+++|||
T Consensus 286 ~epssa~alaa~~~~~~~~~~-~~~vv~i~tGg 317 (319)
T PRK06381 286 ALPASASALAALVKYLKKNGV-NDNVVAVITGR 317 (319)
T ss_pred cCchHHHHHHHHHHHHHcCCC-CCcEEEEecCC
Confidence 999999999999999877643 47899999764
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=324.13 Aligned_cols=233 Identities=22% Similarity=0.261 Sum_probs=195.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC--
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ-- 94 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 94 (270)
+|+++|+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.++. +++++.+.+.+++++. +++|++
T Consensus 118 ~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~ 194 (399)
T PRK08206 118 TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDT 194 (399)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCc
Confidence 59999999999999999999999999999999999999999999999999995 6888888999988876 778776
Q ss_pred ---CCCC-CCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcC--CCeEEEEEecCCCcccc---
Q 024252 95 ---QFEN-PANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHN--PEIKLYGVEPVESAVLS--- 162 (270)
Q Consensus 95 ---~~~~-~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~--~~~~vigV~~~~~~~~~--- 162 (270)
||+| |.+.+.||+|+++||++|+++ .||+||+|+|+|||++|++.++++++ +.+|||+|||++++++.
T Consensus 195 ~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~ 274 (399)
T PRK08206 195 AWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSA 274 (399)
T ss_pred cccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHH
Confidence 6765 556688999999999999965 59999999999999999999999984 47999999999998763
Q ss_pred -CCCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHH----HcCCeechhHHHHHHHHHHH
Q 024252 163 -GGKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAAAIQI 228 (270)
Q Consensus 163 -~~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~----~~gi~~ep~sg~alaa~~~~ 228 (270)
.+++. .+..+++..+. .++.+.++.+|+++.|+|+|+++++++|++ ++|+++||++|+++++++++
T Consensus 275 ~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~ 354 (399)
T PRK08206 275 VDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAAL 354 (399)
T ss_pred HcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHH
Confidence 23321 23345554432 234455688999999999999999999996 78999999999999999976
Q ss_pred hhc---------CC-CCCCeEEEEecCCCCCCcch
Q 024252 229 AKR---------PE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 229 ~~~---------~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
.++ +. .++++||+|+| +|+++.+.
T Consensus 355 ~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~ 388 (399)
T PRK08206 355 MTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR 388 (399)
T ss_pred HhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 532 22 35789999997 78877663
|
|
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=316.94 Aligned_cols=229 Identities=24% Similarity=0.222 Sum_probs=187.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||..|.+.| .++|+++||||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+.
T Consensus 88 ~i~~a~~~g-----~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~- 159 (338)
T PRK06450 88 LISYLAEKG-----IKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA- 159 (338)
T ss_pred HHHHHHHcC-----CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH-
Confidence 356677655 4579999999999999999999999999999999999999999999999999996 45554433
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
+++. +.+|++++.||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|
T Consensus 160 ---a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~V 234 (338)
T PRK06450 160 ---AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAV 234 (338)
T ss_pred ---HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEE
Confidence 4443 6788899999998 78999999999999964 599999999999999999999999864 3899999
Q ss_pred ecCCCcccc----CCCCC-----CcccccCCCCCCcccc------ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhH
Q 024252 154 EPVESAVLS----GGKPG-----PHKIQGIGAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 218 (270)
Q Consensus 154 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~------~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~s 218 (270)
||++++++. +..+. .+..+++..+. |... .++. ++.+.|+|+|+++++++|++ +|+++||+|
T Consensus 235 q~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepss 311 (338)
T PRK06450 235 QTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSS 311 (338)
T ss_pred eeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhH
Confidence 999987764 22111 12233443222 2221 2344 78999999999999999987 599999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCc
Q 024252 219 GAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 219 g~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~ 251 (270)
|+++++++++ ++++||+++||+|+|.+
T Consensus 312 aaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 312 ATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 9999999875 34789999999999864
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=322.00 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=198.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|++.| .++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+
T Consensus 103 ~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a 175 (442)
T PRK05638 103 AVSYGLPYA-----ANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYA 175 (442)
T ss_pred HHHHHHHcC-----CCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHH
Confidence 355676654 5679999999999999999999999999999999999999999999999999985 688888888
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEEe
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVE 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV~ 154 (270)
++++++. ++|++++++||.+ +.||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .+||++||
T Consensus 176 ~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq 251 (442)
T PRK05638 176 EELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQ 251 (442)
T ss_pred HHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEe
Confidence 8887775 7899999999998 7899999999999995 99999999999999999999999865 37999999
Q ss_pred cCCCcccc----CCCC--CCcccccCCCCCCcc------ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHH
Q 024252 155 PVESAVLS----GGKP--GPHKIQGIGAGFIPG------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 222 (270)
Q Consensus 155 ~~~~~~~~----~~~~--~~~~~~gl~~~~~~~------~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~al 222 (270)
|++++++. ++.. ..+...++..+. |. ...+++.+.++.|+|+++.++++.+++ +||++||+||+++
T Consensus 252 ~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~ 329 (442)
T PRK05638 252 TERCNPIASEILGNKTKCNETKALGLYVKN-PVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVM 329 (442)
T ss_pred cCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHH
Confidence 99987664 2221 122233442221 11 122345567889999999888887765 7999999999999
Q ss_pred HHHHHHhhcCC-CCCCeEEEEecCCCCCCc
Q 024252 223 AAAIQIAKRPE-NAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 223 aa~~~~~~~~~-~~~~~vv~i~t~gg~~~~ 251 (270)
|+++++.+++. .++++||+++||+|.|+.
T Consensus 330 Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 330 PALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 99999988765 568899999999999985
|
|
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=295.28 Aligned_cols=206 Identities=45% Similarity=0.646 Sum_probs=189.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
++..+.++|++ |+ .+||++|+||||+|+|++|+++|++|++|+|...++.|+++++.+|++|+.+++ +++++.+.+
T Consensus 38 ~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a 113 (244)
T cd00640 38 LILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALA 113 (244)
T ss_pred HHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHH
Confidence 46778888877 54 469999999999999999999999999999999999999999999999999996 478888999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
++++++.++++|++||.|+.+ +.||.++++||++|++. .||+||+|+|+||+++|++.+|+..+|.+|||+|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~---- 188 (244)
T cd00640 114 KELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP---- 188 (244)
T ss_pred HHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----
Confidence 999988568999999999988 78899999999999976 699999999999999999999999999999999987
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
+++.|+|+|+++++++|++++|+++||++|+++++++++.++. .++++|
T Consensus 189 ------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~v 237 (244)
T cd00640 189 ------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTV 237 (244)
T ss_pred ------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEE
Confidence 7899999999999999999999999999999999999988775 367899
Q ss_pred EEEecCC
Q 024252 240 VVVFPSF 246 (270)
Q Consensus 240 v~i~t~g 246 (270)
|+++||+
T Consensus 238 v~v~tg~ 244 (244)
T cd00640 238 VVILTGG 244 (244)
T ss_pred EEEeCCC
Confidence 9999874
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=312.34 Aligned_cols=242 Identities=19% Similarity=0.249 Sum_probs=196.6
Q ss_pred HHcCCCCC--CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 024252 6 EEKGLIRP--GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 83 (270)
Q Consensus 6 ~~~g~l~~--g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 83 (270)
++.+++++ |.++||++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+.++++
T Consensus 83 ~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~ 160 (376)
T TIGR01747 83 LKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQM 160 (376)
T ss_pred HhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHH
Confidence 34455543 35689999999999999999999999999999999999999999999999999995 588888889888
Q ss_pred HHhCCCccccC-----CCCC--CCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCC--CeEE
Q 024252 84 RDKTPNSYVLQ-----QFEN--PANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP--EIKL 150 (270)
Q Consensus 84 ~~~~~~~~~~~-----~~~~--~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~--~~~v 150 (270)
+++. ++++++ +|+| |. .+.||+|+++||++|+++ .||+||+|+|+||+++|++.++++..+ .++|
T Consensus 161 ~~~~-g~~~~~~~~~~~~~~~~~~-ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~v 238 (376)
T TIGR01747 161 AQQH-GWVVVQDTAWEGYEKIPTW-IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHS 238 (376)
T ss_pred HHhc-CcEEeccccccccccCCch-HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEE
Confidence 8776 678876 4655 43 378999999999999963 699999999999999999999987654 3799
Q ss_pred EEEecCCCccccC------CCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHc----C
Q 024252 151 YGVEPVESAVLSG------GKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKE----G 211 (270)
Q Consensus 151 igV~~~~~~~~~~------~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~----g 211 (270)
++|||.+++++.. +++. .+.++++..+. .++.+.++..+.++.|+|+|+.+++++|++.. +
T Consensus 239 i~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~ 318 (376)
T TIGR01747 239 IVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPR 318 (376)
T ss_pred EEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCe
Confidence 9999999988742 3321 24456676543 24556678899999999999999999999855 5
Q ss_pred CeechhHHHHHHHHHHH---------hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 212 LLVGISSGAATAAAIQI---------AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~---------~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+++||+++++++++... .+++. .++++||+|+ ++|+.+.+
T Consensus 319 i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~ 368 (376)
T TIGR01747 319 IISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD 368 (376)
T ss_pred EeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH
Confidence 99999999999888843 33333 3468888888 66886665
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=304.41 Aligned_cols=241 Identities=23% Similarity=0.263 Sum_probs=196.3
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|.++.++| ..+||++||||||+|+|++|+++|++|+||+|+. +++.|+..++.+||+|+.+++ +++++.+.+
T Consensus 63 l~~a~~~g-----~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~ 135 (328)
T TIGR00260 63 LTKALELG-----NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLV 135 (328)
T ss_pred HHHHHHcC-----CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHH
Confidence 55666666 3479999999999999999999999999999998 899999999999999999996 578888888
Q ss_pred HHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcCC-----CeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP-----EIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~~-----~~~vigV 153 (270)
+++.++. +.+++++++ +|.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|+++.. .+++++|
T Consensus 136 ~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~V 213 (328)
T TIGR00260 136 KQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGI 213 (328)
T ss_pred HHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEE
Confidence 8888775 455555543 2666 78999999999999974 799999999999999999999998521 2499999
Q ss_pred ecCCCcccc-----CCCCC-----CcccccCCCCCCccc------cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechh
Q 024252 154 EPVESAVLS-----GGKPG-----PHKIQGIGAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS 217 (270)
Q Consensus 154 ~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~ 217 (270)
||.+++++. .++.. .+..++++.+. |.+ +.+.+.++.+.|+|+|+++++++|++++|+++||+
T Consensus 214 e~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps 292 (328)
T TIGR00260 214 QAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPH 292 (328)
T ss_pred EcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECch
Confidence 999985442 23222 12233443322 222 23467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 218 SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 218 sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+|+++++++++.+++. .++++||+++||+|.|+.+
T Consensus 293 sa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 293 SAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 9999999999887654 4678999999999998753
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=305.07 Aligned_cols=245 Identities=26% Similarity=0.289 Sum_probs=186.0
Q ss_pred HHHHHHcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCCC-ChHHH
Q 024252 2 IADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPAR-GMKGA 76 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~~~-~~~~~ 76 (270)
+..|.++|. +.+|+ +|+||||+|+|++|+++|++|+||+|+..+ +.|+.+++.+||+|+.++... .+.++
T Consensus 74 ~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~ 148 (365)
T cd06446 74 ALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDA 148 (365)
T ss_pred HHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHH
Confidence 344566662 23555 799999999999999999999999998643 367889999999999998632 35566
Q ss_pred HHHHHHH-HHhC-CCccccCCC----CCCCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 77 VQKAEEI-RDKT-PNSYVLQQF----ENPANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 77 ~~~a~~~-~~~~-~~~~~~~~~----~~~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
...+.+. .++. +.+|+++++ .++.++++||+|+++||++|++. .||+||+|+|+|||++|++++++. .+
T Consensus 149 ~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~ 227 (365)
T cd06446 149 ISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DK 227 (365)
T ss_pred HHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CC
Confidence 5444443 3332 234444332 12335688999999999999963 699999999999999999998887 46
Q ss_pred CeEEEEEecCCCccccCC--------CCC--------------------CcccccCCCC-CCc--cccccccCCcEEEcC
Q 024252 147 EIKLYGVEPVESAVLSGG--------KPG--------------------PHKIQGIGAG-FIP--GVLDVNLLDETVQIS 195 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~-~~~--~~~~~~~~~~~~~V~ 195 (270)
++|||+|||.+++.+.+. ... .+..++++.+ ..+ +.+..+++|+++.|+
T Consensus 228 ~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~ 307 (365)
T cd06446 228 DVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVT 307 (365)
T ss_pred CceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeC
Confidence 899999999998876421 110 0112233321 111 124456789999999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
|+|+++++++|++++||++||+||+++++++++.++. .++++||+|+||+|+||+++
T Consensus 308 d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 308 DEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred hHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 9999999999999999999999999999999988765 36789999999999999886
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=309.31 Aligned_cols=242 Identities=18% Similarity=0.121 Sum_probs=195.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|..+.+.| .+.||++|+||||+|+|++|+++|++|+||||++++..+...++.+|++|+.+++ +|+++.+.++
T Consensus 109 i~~a~~~g-----~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~ 181 (398)
T TIGR03844 109 MQRLKERG-----GKTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALAD 181 (398)
T ss_pred HHHHHHcC-----CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHH
Confidence 45666666 4579999999999999999999999999999997654334445789999999985 6889999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-------CCeEEEEEe
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-------PEIKLYGVE 154 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-------~~~~vigV~ 154 (270)
+++++. +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++. ..||+++||
T Consensus 182 ~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ 259 (398)
T TIGR03844 182 RIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQ 259 (398)
T ss_pred HHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEE
Confidence 988775 6554456678876 8999999999999996449999999999999999999998842 337899999
Q ss_pred cCCCcccc----CCCCC---------------CcccccCCCCCCcc-------ccccccCCcEEEcCHHHHHHHHHHHHH
Q 024252 155 PVESAVLS----GGKPG---------------PHKIQGIGAGFIPG-------VLDVNLLDETVQISSEEAIETAKLLAL 208 (270)
Q Consensus 155 ~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~V~~~e~~~a~~~l~~ 208 (270)
+++++++. .++.. .+..+++..+..+. ...++..++++.|+|+|+.++++.|++
T Consensus 260 ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~ 339 (398)
T TIGR03844 260 NLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEE 339 (398)
T ss_pred cCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 99998764 33221 12234443322222 233577899999999999999999999
Q ss_pred HcCCeechhHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 209 KEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 209 ~~gi~~ep~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
++|+++||++|+++||++++.+++. .++++||+++||+|.|++.
T Consensus 340 ~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 340 SEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred hCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 9999999999999999999988765 3788999999999999775
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=302.57 Aligned_cols=240 Identities=21% Similarity=0.258 Sum_probs=188.0
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
||.+|+++| .++||++ |+||||+|+|++|+++|++|+||||++.+ ..|+++++.+||+|+.++..
T Consensus 43 ~l~~a~~~g-----~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~ 117 (307)
T cd06449 43 LLPDALAKG-----ADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAG 117 (307)
T ss_pred HHHHHHHcC-----CCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCc
Confidence 355666666 4579998 68999999999999999999999999876 46899999999999999864
Q ss_pred CC--hHHHHHHHHH-HHHhCCCcccc-CCC-CCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhh
Q 024252 71 RG--MKGAVQKAEE-IRDKTPNSYVL-QQF-ENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLK 142 (270)
Q Consensus 71 ~~--~~~~~~~a~~-~~~~~~~~~~~-~~~-~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~ 142 (270)
.+ ...+.+.+.+ +.++.+..|++ +++ +||.+ ..||.++++||++|++. .||+||+|+|+|||++|++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~ 196 (307)
T cd06449 118 FDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLA 196 (307)
T ss_pred chhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH
Confidence 21 1223333333 33333233444 444 38887 78999999999999964 69999999999999999999999
Q ss_pred hcCCCeEEEEEecCCCccccCCCCC---CcccccCC--CCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-
Q 024252 143 EHNPEIKLYGVEPVESAVLSGGKPG---PHKIQGIG--AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI- 216 (270)
Q Consensus 143 ~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~--~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep- 216 (270)
+.++++|||+|+|.+++.+...+.. ...+.+++ .+..+..+..+++|+++.|+|+|+++++++|++++||++||
T Consensus 197 ~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ 276 (307)
T cd06449 197 ALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPV 276 (307)
T ss_pred hcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccc
Confidence 9999999999999998765321110 01222222 22235567778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCC
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 246 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~g 246 (270)
|+|+++++++++.+++. .++++||+|||||
T Consensus 277 ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 277 YEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 89999999999988764 4678999999775
|
|
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=278.88 Aligned_cols=260 Identities=38% Similarity=0.581 Sum_probs=220.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-----ChH-
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-----GMK- 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-----~~~- 74 (270)
||+.|++.|+|-||. +|++.|+||+|+++|..|+.+|.+|+|+||.+.+.+|.+.++.+||+|+.|.+.. .|.
T Consensus 87 iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn 165 (391)
T KOG1481|consen 87 IIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVN 165 (391)
T ss_pred HHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHH
Confidence 688999999999995 6999999999999999999999999999999999999999999999999987532 222
Q ss_pred HHHHHHHHHHHhCC--CccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCC-eEEE
Q 024252 75 GAVQKAEEIRDKTP--NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLY 151 (270)
Q Consensus 75 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~-~~vi 151 (270)
.+.+.+.++..+.. ..++.+||+|+.|+..||.++|+||+.|.++++|++++.+|+|||++|+.+++|+..+. +++.
T Consensus 166 ~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~ 245 (391)
T KOG1481|consen 166 QARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVF 245 (391)
T ss_pred HHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEE
Confidence 23344444433322 23678999999999999999999999999999999999999999999999999999876 8999
Q ss_pred EEecCCCcccc-------------CCC----CCCcccccCCCCCCcccc--ccccCCcEEEcCHHHHHHHHHHHHHHcCC
Q 024252 152 GVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGVL--DVNLLDETVQISSEEAIETAKLLALKEGL 212 (270)
Q Consensus 152 gV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~--~~~~~~~~~~V~~~e~~~a~~~l~~~~gi 212 (270)
..+|-++-.+. +|+ +..+..+|+|.+.++.++ ..+++|+.+.|+|+++++..+.|..++|+
T Consensus 246 laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGL 325 (391)
T KOG1481|consen 246 LADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGL 325 (391)
T ss_pred EeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCce
Confidence 99999984221 122 234556788877666554 46789999999999999999999999999
Q ss_pred eechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 213 LVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 213 ~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+++.||+.+..|+.++++.. .+|++||+|+|+.|.|+++.++.+.+.+.
T Consensus 326 FvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~ 374 (391)
T KOG1481|consen 326 FVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLES 374 (391)
T ss_pred EecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhh
Confidence 99999999999999998765 48999999999999999998766665554
|
|
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=298.43 Aligned_cols=246 Identities=26% Similarity=0.269 Sum_probs=187.6
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL---ERRMVLLAFGAELVLTDP-ARGMKGAVQ 78 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~-~~~~~~~~~ 78 (270)
..|.+.| + .+.|+++|+||||+|+|++|+++|++|+||||+..++ .|+.+|+.+||+|+.++. ...++++.+
T Consensus 103 l~A~~~G---~-~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~ 178 (402)
T PRK13028 103 LLAKRMG---K-KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVD 178 (402)
T ss_pred HHHHHcC---C-CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Confidence 3455556 2 2346679999999999999999999999999985443 567899999999999984 346788877
Q ss_pred HHHH-HHHhCCCccccC-CC----CCCCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCe
Q 024252 79 KAEE-IRDKTPNSYVLQ-QF----ENPANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEI 148 (270)
Q Consensus 79 ~a~~-~~~~~~~~~~~~-~~----~~~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~ 148 (270)
.+.+ +.++.++.+|+. +. ..|.++..||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++
T Consensus 179 ~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v 257 (402)
T PRK13028 179 SAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESV 257 (402)
T ss_pred HHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCc
Confidence 7755 454433555553 21 1233445699999999999973 3599999999999999999999986 4889
Q ss_pred EEEEEecCC--------CccccCCCCC--------------------CcccccCCCCC-Ccc--ccccccCCcEEEcCHH
Q 024252 149 KLYGVEPVE--------SAVLSGGKPG--------------------PHKIQGIGAGF-IPG--VLDVNLLDETVQISSE 197 (270)
Q Consensus 149 ~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~-~~~--~~~~~~~~~~~~V~~~ 197 (270)
|||||||.+ ++++..+++. .+...++..+. -|. .+.....++.+.|+|+
T Consensus 258 ~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~ 337 (402)
T PRK13028 258 RLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDE 337 (402)
T ss_pred eEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHH
Confidence 999999998 6666544431 01112332211 121 1334456789999999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++|+++|||+++++|++++++++++.++. .++++||+++||+|+||++.+
T Consensus 338 eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 338 EALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred HHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 99999999999999999999999999999987653 368899999999999998864
|
|
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=301.77 Aligned_cols=233 Identities=20% Similarity=0.223 Sum_probs=187.1
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ- 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 94 (270)
.+||++|+||||+|+|++|+++|++|+||||+++++.|+..++.|||+|+.+++ +++++.+.+++++++. +++|++
T Consensus 114 ~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~ 190 (396)
T TIGR03528 114 ITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQD 190 (396)
T ss_pred cEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecc
Confidence 379999999999999999999999999999999999999999999999999985 6888889999988875 778875
Q ss_pred ----CCCCC-CchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhc-CCC-eEEEEEecCCCccccC
Q 024252 95 ----QFENP-ANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPE-IKLYGVEPVESAVLSG 163 (270)
Q Consensus 95 ----~~~~~-~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~-~~~-~~vigV~~~~~~~~~~ 163 (270)
+|+|. ...+.||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. +|||+|||++++++..
T Consensus 191 ~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~ 270 (396)
T TIGR03528 191 TAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYR 270 (396)
T ss_pred ccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHH
Confidence 57652 2236899999999999996 26999999999999999999988554 343 5999999999987742
Q ss_pred ------CCCC------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHH----HcCCeechhHHHHHHH
Q 024252 164 ------GKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAA 224 (270)
Q Consensus 164 ------~~~~------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~----~~gi~~ep~sg~alaa 224 (270)
+++. .+..+++..+. .++.+.++++|+++.|+|+|+.+++++|++ ++++++||++|+++++
T Consensus 271 s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aa 350 (396)
T TIGR03528 271 SAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGL 350 (396)
T ss_pred HHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHH
Confidence 2221 23445565432 234455688999999999999999999998 5799999999999966
Q ss_pred HHHH---------hhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 225 AIQI---------AKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 225 ~~~~---------~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+..+ .+++. .++++||+|+ +|||.+.+
T Consensus 351 laa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~ 387 (396)
T TIGR03528 351 LAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD 387 (396)
T ss_pred HHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH
Confidence 5332 22222 3578899999 55886555
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=299.75 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=187.8
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
|+.+|+++| ..+|+++ |+||||+|+|++|+++|++|++|++..++ ..|+.+++.|||+|+.++..
T Consensus 58 ~l~~a~~~G-----~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 132 (337)
T PRK12390 58 LVPDALAQG-----ADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG 132 (337)
T ss_pred HHHHHHHcC-----CCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC
Confidence 356677666 4678888 88999999999999999999999876544 23677899999999999863
Q ss_pred C--ChHHHHHHHHHHHHhCCCccc-cCCCCCC-CchhhhhhchHHHHHHh---hCCCCCEEEEecCCchhHHHHHHHhhh
Q 024252 71 R--GMKGAVQKAEEIRDKTPNSYV-LQQFENP-ANPKIHYETTGPEIWKG---TGGKIDALVSGIGTGGTVTGAGKYLKE 143 (270)
Q Consensus 71 ~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~~~~~G~~t~~~EI~~q---l~~~~d~iv~~vG~Gg~~aGi~~~~~~ 143 (270)
. .+.++.+.+.++.++..+..| ++++.++ .....||.++++||++| ++.+||+||+|+|+|||++|++.+||+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~ 212 (337)
T PRK12390 133 FDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAA 212 (337)
T ss_pred cchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHh
Confidence 1 233666666666666334334 5555433 12256888999999998 444799999999999999999999999
Q ss_pred cCCCeEEEEEecCCCccccCCCC---CCcccccCCCCC--Cc--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 144 HNPEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 144 ~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
..|++|||+|+|.+++.+...+. ..+..++++.+. .+ +.+..+++|++|.|+|+|++++++++++++||++||
T Consensus 213 ~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep 292 (337)
T PRK12390 213 DGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDP 292 (337)
T ss_pred cCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccc
Confidence 99999999999999876643211 122233444332 12 235678899999999999999999999999999999
Q ss_pred -hHHHHHHHHHHHhhcCC-CCCCeEEEEecCC
Q 024252 217 -SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 246 (270)
Q Consensus 217 -~sg~alaa~~~~~~~~~-~~~~~vv~i~t~g 246 (270)
|||+++++++++.+++. .++++||++||||
T Consensus 293 ~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 293 VYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 59999999999998776 4778999999776
|
|
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=297.80 Aligned_cols=236 Identities=22% Similarity=0.283 Sum_probs=179.2
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDPA-RGMKGAV-QKAEEIRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~--~k~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+. .+. .|+++|+.+||+|+.++.. +.+.++. +.++++.++.++.+
T Consensus 101 vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00263 101 IIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTH 180 (385)
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCce
Confidence 45579999999999999999999999999985 343 5788999999999999853 3466664 34445555544555
Q ss_pred cc-CCCCC----CCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc---
Q 024252 92 VL-QQFEN----PANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159 (270)
Q Consensus 92 ~~-~~~~~----~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~--- 159 (270)
|+ +++.+ +.++..||+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++.
T Consensus 181 y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~ 259 (385)
T TIGR00263 181 YVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDT 259 (385)
T ss_pred EEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccc
Confidence 55 44432 23445899999999999983 2589999999999999999998855 699999999999852
Q ss_pred -----cccCCCCC--------------------CcccccCCCCCC-c--cccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 160 -----VLSGGKPG--------------------PHKIQGIGAGFI-P--GVLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 160 -----~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
++..+.+. .+...++..... | +.+.....++++.|+|+|+++++++|++++|
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~eg 339 (385)
T TIGR00263 260 DKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEG 339 (385)
T ss_pred hhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcC
Confidence 23333221 011122221111 1 1233456788999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++|+||+++++++++.++. .++++||+++||+|++|++++
T Consensus 340 i~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 340 IIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred CeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHHH
Confidence 999999999999999987653 368899999999999998853
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=295.82 Aligned_cols=239 Identities=20% Similarity=0.168 Sum_probs=183.5
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~~~~~ 77 (270)
|+..|+++| .++||++ |+||||+|+|++|+++|+++++|||+.. +..+...++.|||+|++++.. ++.+..
T Consensus 47 ~l~~a~~~g-----~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~ 120 (311)
T TIGR01275 47 LLADALSKG-----ADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIM 120 (311)
T ss_pred HHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhH
Confidence 355666666 4679998 6699999999999999999999999865 455677789999999999852 344444
Q ss_pred HHHHHHHH----hCCCc-cccCCCCCCCchhhhhhchHHHHHHhhCC--CCCEEEEecCCchhHHHHHHHhhhcCCCeEE
Q 024252 78 QKAEEIRD----KTPNS-YVLQQFENPANPKIHYETTGPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHNPEIKL 150 (270)
Q Consensus 78 ~~a~~~~~----~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~v 150 (270)
+.+.++++ +.+.. ++.+++.||.+ ..|+.++++||++|++. .||+||+|+|||||++|++++||+++|+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~v 199 (311)
T TIGR01275 121 KYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRP 199 (311)
T ss_pred HHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcE
Confidence 44444432 22223 45566778877 56777899999999963 6999999999999999999999999999999
Q ss_pred EEEecCCCccccCCC---CCCcccccCCCC-CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHH
Q 024252 151 YGVEPVESAVLSGGK---PGPHKIQGIGAG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAA 225 (270)
Q Consensus 151 igV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~ 225 (270)
|||+|..+....... ..++..++++.+ ...+.+..++.++.+.|+|+|+++++++|++++|+++|| |+|++++++
T Consensus 200 igV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~ 279 (311)
T TIGR01275 200 VGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGL 279 (311)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHH
Confidence 999987653211100 011233455433 223445567788899999999999999999999999999 699999999
Q ss_pred HHHhhcCCCCCCeEEEEecCC
Q 024252 226 IQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 226 ~~~~~~~~~~~~~vv~i~t~g 246 (270)
++++++...++++||+|+|||
T Consensus 280 ~~~~~~~~~~~~~vv~i~tGG 300 (311)
T TIGR01275 280 IDLIRKGELGEKGILFIHTGG 300 (311)
T ss_pred HHHHHhCCCCCCCEEEEECCC
Confidence 998876655577899999664
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=294.08 Aligned_cols=250 Identities=23% Similarity=0.275 Sum_probs=187.9
Q ss_pred HHHHHcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCCC------
Q 024252 3 ADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG------ 72 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga~v~~~~~~~~------ 72 (270)
..+.++| .+.+++ +|+||||+|+|++|+++|++|+||||+. .++.|+.+|+.|||+|+.+++..+
T Consensus 119 ~~a~~~G-----~~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~ 193 (427)
T PRK12391 119 YYNKKEG-----IKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKI 193 (427)
T ss_pred HHHHHCC-----CCEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhh
Confidence 3456666 334665 6799999999999999999999999974 356789999999999999985311
Q ss_pred ----------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHH
Q 024252 73 ----------MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 73 ----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~ 139 (270)
+..+++.+.+++.+.++.+|+..+.+ .+.+.||.++++||++|+. ..||+||+|+|+||+++|++.
T Consensus 194 ~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~ 272 (427)
T PRK12391 194 LAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAF 272 (427)
T ss_pred hhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Confidence 11245666777666545445544332 2357899999999999995 369999999999999999998
Q ss_pred Hhhh---cC-CCeEEEEEecCCCccccCCCC--------C--C-cccccCCCCCCccccc-----------------ccc
Q 024252 140 YLKE---HN-PEIKLYGVEPVESAVLSGGKP--------G--P-HKIQGIGAGFIPGVLD-----------------VNL 187 (270)
Q Consensus 140 ~~~~---~~-~~~~vigV~~~~~~~~~~~~~--------~--~-~~~~gl~~~~~~~~~~-----------------~~~ 187 (270)
+|.. .+ +++|||+|||.+++++..+.. . + ..+.+++.+++|..+. ...
T Consensus 273 ~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~ 352 (427)
T PRK12391 273 PFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEG 352 (427)
T ss_pred HHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcC
Confidence 7733 34 889999999999988865321 1 1 2344666554443321 233
Q ss_pred CCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCC--CCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 188 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE--NAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 188 ~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~--~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
+.+.+.|+|+|+++++++|++++||+++|+||+++++++++.++.+ .++++||+++||+|++ |...|+++.
T Consensus 353 ~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~--d~~~y~~~l 425 (427)
T PRK12391 353 LIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLL--DLAAYDAYL 425 (427)
T ss_pred ceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCC--CHHHHHHHh
Confidence 4478999999999999999999999999999999999999887653 2467888888777875 444676654
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=292.92 Aligned_cols=246 Identities=26% Similarity=0.326 Sum_probs=182.9
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-C--HHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-S--LERRMVLLAFGAELVLTDP-ARGMKGAVQ 78 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~--~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~ 78 (270)
..|.+.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. + ..|+.+|+.+||+|+.++. ...+.++.+
T Consensus 99 l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ 174 (397)
T PRK04346 99 LLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVN 174 (397)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 34555562 23566689999999999999999999999999853 3 3577889999999999984 335666666
Q ss_pred HHHH-HHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCe
Q 024252 79 KAEE-IRDKTPNSYVL-QQFEN----PANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEI 148 (270)
Q Consensus 79 ~a~~-~~~~~~~~~~~-~~~~~----~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~ 148 (270)
.+.+ +.++.++.+|+ .+..+ |.+...||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++
T Consensus 175 ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v 253 (397)
T PRK04346 175 EALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESV 253 (397)
T ss_pred HHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCC
Confidence 5554 45443344454 33322 33435699999999999984 3699999999999999999999976 7899
Q ss_pred EEEEEecCCCc--------cccCCCCC-------------------Ccc-cccCCCCCC-c--cccccccCCcEEEcCHH
Q 024252 149 KLYGVEPVESA--------VLSGGKPG-------------------PHK-IQGIGAGFI-P--GVLDVNLLDETVQISSE 197 (270)
Q Consensus 149 ~vigV~~~~~~--------~~~~~~~~-------------------~~~-~~gl~~~~~-~--~~~~~~~~~~~~~V~~~ 197 (270)
|||||||.++. ++..+++. .+. ..|+..+.+ | ..+.....++.+.|+|+
T Consensus 254 ~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~ 333 (397)
T PRK04346 254 RLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDD 333 (397)
T ss_pred eEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHH
Confidence 99999999862 22223221 011 122221111 1 22334556789999999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++++|++++||+++++|+.++++++++.++. .++++||+++||+|+||++++
T Consensus 334 eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 334 EALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred HHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 99999999999999999999999999999886543 367899999999999998864
|
|
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=293.58 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=188.9
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~--------~~k~~~~~~~Ga~v~~~~~~ 70 (270)
|+.+|.++| .++|+++ |+||||+|+|++|+++|++|+||+|+..+ ..|+.+++.|||+|+.++..
T Consensus 57 ~l~~a~~~G-----~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 131 (337)
T TIGR01274 57 LIPDAQAQG-----CTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG 131 (337)
T ss_pred HHHHHHHcC-----CCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc
Confidence 355666666 5678887 77999999999999999999999998543 57999999999999999853
Q ss_pred C--ChHHHHHHHHHHHHhCC-CccccCCCCC--CCchhhhhhchHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHhh
Q 024252 71 R--GMKGAVQKAEEIRDKTP-NSYVLQQFEN--PANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLK 142 (270)
Q Consensus 71 ~--~~~~~~~~a~~~~~~~~-~~~~~~~~~~--~~~~~~G~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~aGi~~~~~ 142 (270)
. +..++...+.+..++.+ ..|+++.+.+ +.. ..|+.++++||++|+ +..||+||+|+|+|||++|++++++
T Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~ 210 (337)
T TIGR01274 132 FDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFA 210 (337)
T ss_pred ccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHH
Confidence 1 12355555555555542 3366666643 443 568899999999995 3469999999999999999999999
Q ss_pred hcCCCeEEEEEecCCCccccCCC---CCCcccccCCCCC--Cc--cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeec
Q 024252 143 EHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG 215 (270)
Q Consensus 143 ~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~e 215 (270)
...+++|||+|+|.+++.+.... ...+.+++++.+. .+ +.+...++++.|.|+|+|+++++++|++++|+++|
T Consensus 211 ~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~e 290 (337)
T TIGR01274 211 ADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTD 290 (337)
T ss_pred HhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccC
Confidence 99999999999999997653221 1123334444322 11 35667788999999999999999999999999999
Q ss_pred h-hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCC
Q 024252 216 I-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGE 248 (270)
Q Consensus 216 p-~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~ 248 (270)
| |||+++++++++++++. .++++||+|||| |.
T Consensus 291 p~ytg~~~aa~~~~~~~g~~~~~~~vv~~htG-G~ 324 (337)
T TIGR01274 291 PVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLG-GA 324 (337)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCCEEEEEeCC-Ch
Confidence 9 69999999999998876 577899999966 54
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=293.16 Aligned_cols=248 Identities=23% Similarity=0.281 Sum_probs=186.7
Q ss_pred HHHHHHcCCCCCCCcEEE-eeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCCCChHH--
Q 024252 2 IADAEEKGLIRPGESVLI-EPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKG-- 75 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv-~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~-- 75 (270)
+..+.++|. ++++ ++|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++.. +++
T Consensus 109 ~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~ 181 (419)
T TIGR01415 109 AYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFG 181 (419)
T ss_pred HHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHH
Confidence 445666663 3456 468999999999999999999999999854 567899999999999999863 222
Q ss_pred ----------------HHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHH
Q 024252 76 ----------------AVQKAEEIRDKTP-NSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVT 135 (270)
Q Consensus 76 ----------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~a 135 (270)
++..+.+.+++.+ ..|+.+++.|+ +..||.++|+||++|++. .||+||+|+|+||+++
T Consensus 182 r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~ 259 (419)
T TIGR01415 182 REVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFA 259 (419)
T ss_pred HHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHH
Confidence 2456666665543 44666665553 467999999999999964 4999999999999999
Q ss_pred HHHHHhhhc----CCCeEEEEEecCCCccccCCCC----------C-CcccccCCCCCCcccc-----------------
Q 024252 136 GAGKYLKEH----NPEIKLYGVEPVESAVLSGGKP----------G-PHKIQGIGAGFIPGVL----------------- 183 (270)
Q Consensus 136 Gi~~~~~~~----~~~~~vigV~~~~~~~~~~~~~----------~-~~~~~gl~~~~~~~~~----------------- 183 (270)
|++.+|.+. .+++|||+|||++++++..+.. . ...+.+++.+++|...
T Consensus 260 Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l 339 (419)
T TIGR01415 260 GLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLL 339 (419)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHH
Confidence 999888432 2579999999999988765431 0 1223455554433321
Q ss_pred ccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCC--CeEEEEecCCCCCCcchhhcHHHH
Q 024252 184 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 184 ~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~--~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
.++.+.+.+.|+|+|+++++++|++++||+++|+||+++++++++.++.+..+ ++||+++||+|+++++ .|+++.
T Consensus 340 ~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~--~y~~~~ 416 (419)
T TIGR01415 340 VNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLK--AYAKYL 416 (419)
T ss_pred hhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHH--HHHHHh
Confidence 13444578999999999999999999999999999999999999887765323 3666777777886544 565543
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=290.77 Aligned_cols=236 Identities=22% Similarity=0.305 Sum_probs=179.1
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHH-HHHHHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQK-AEEIRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~-a~~~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.|||+|+.++. ..++.++... ++++.++..+.+
T Consensus 122 vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~ 201 (410)
T PLN02618 122 IIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTH 201 (410)
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCE
Confidence 344667999999999999999999999999853 35677799999999999954 3467777644 445666533445
Q ss_pred cc-CCCC--C--CCchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC----
Q 024252 92 VL-QQFE--N--PANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES---- 158 (270)
Q Consensus 92 ~~-~~~~--~--~~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~---- 158 (270)
|+ .+.. + +.+...|++++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .+++|||||||.++
T Consensus 202 yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~ 280 (410)
T PLN02618 202 YILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDS 280 (410)
T ss_pred EEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccc
Confidence 55 2221 2 2234579999999998776 34699999999999999999999975 78999999999997
Q ss_pred ----ccccCCCCC-------------------Cc-ccccCCCCC-Ccc--ccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 159 ----AVLSGGKPG-------------------PH-KIQGIGAGF-IPG--VLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 159 ----~~~~~~~~~-------------------~~-~~~gl~~~~-~~~--~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
.++..+++. .+ ...++..+. -|. .+.....++.+.|+|+|+++++++|+++||
T Consensus 281 ~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eG 360 (410)
T PLN02618 281 GKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEG 360 (410)
T ss_pred cccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcC
Confidence 223333221 01 112232211 111 122346789999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++|+++++++++++++. .++++||++++|+|+||++++
T Consensus 361 Ii~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 361 IIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred ceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 999999999999999998763 468899999999999999974
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=303.62 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=187.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCC-CChHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPA-RGMKGAV 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~ 77 (270)
+..|.+.|.. +.|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.. .++.++.
T Consensus 371 i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai 446 (695)
T PRK13802 371 ALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAI 446 (695)
T ss_pred HHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHH
Confidence 4566777742 468899999999999999999999999999985 3678999999999999999843 3567775
Q ss_pred HHH-HHHHHhCC-CccccCCCCCC----CchhhhhhchHHHHHHhhCC-----CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 78 QKA-EEIRDKTP-NSYVLQQFENP----ANPKIHYETTGPEIWKGTGG-----KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 78 ~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~G~~t~~~EI~~ql~~-----~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
+.+ +++.++.+ .+|+++++.|| .++..||+++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|
T Consensus 447 ~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~ 525 (695)
T PRK13802 447 NEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DE 525 (695)
T ss_pred HHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CC
Confidence 555 44555433 45677777654 34468999999999999952 699999999999999999999976 68
Q ss_pred CeEEEEEecCCCccccCCCCCCcccc---------------------------cCCCCC-----CccccccccCCcE--E
Q 024252 147 EIKLYGVEPVESAVLSGGKPGPHKIQ---------------------------GIGAGF-----IPGVLDVNLLDET--V 192 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~~~~~~~~~---------------------------gl~~~~-----~~~~~~~~~~~~~--~ 192 (270)
.+|+|||||.++....+.+. .+... .+..+. -|..-.....+.+ +
T Consensus 526 ~vkligVE~~g~g~~~g~h~-~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~ 604 (695)
T PRK13802 526 RVNLYGYEAGGNGPESGKHA-IRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYS 604 (695)
T ss_pred CceEEEEEecCCCccccchh-hhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEE
Confidence 89999999999753321100 00001 111000 0111111223444 8
Q ss_pred EcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCC---CCCeEEEEecCCCCCCcchh
Q 024252 193 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN---AGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 193 ~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~---~~~~vv~i~t~gg~~~~~~~ 254 (270)
.|+|+|++++.+.|+++|||+++|+|++|++++++++++... .+++||+++||+|+||++++
T Consensus 605 ~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 605 WATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred EECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 999999999999999999999999999999999999875432 25689999999999999974
|
|
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=291.65 Aligned_cols=241 Identities=24% Similarity=0.305 Sum_probs=187.2
Q ss_pred HHHHHHcCCCCCCCcEEEeeC--CcHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeCCCC
Q 024252 2 IADAEEKGLIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPAR 71 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aS--sGN~g~alA~aa~~~G~~~~iv~p~~~~~--------~k~~~~~~~Ga~v~~~~~~~ 71 (270)
|.+|.++| .++||++| +||||+|+|++|+.+|++|+||||+..+. .|+..++.+||+|+.++..+
T Consensus 56 l~~a~~~g-----~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~ 130 (331)
T PRK03910 56 LADALAQG-----ADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGT 130 (331)
T ss_pred HHHHHHcC-----CCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccc
Confidence 45566555 46788874 59999999999999999999999998775 45689999999999998753
Q ss_pred ChHH-HHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 72 GMKG-AVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 72 ~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
+..+ +...++++.++.+..| +..++.|+.+ ..||.+++.||++|++. .||+||+|+|||||++|++++|++++|
T Consensus 131 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~ 209 (331)
T PRK03910 131 DMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGP 209 (331)
T ss_pred hHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC
Confidence 3333 3445666666543333 3456678877 56889999999999963 699999999999999999999999999
Q ss_pred CeEEEEEecCCCccccCCCC---CCcccccCCCC--C--CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hH
Q 024252 147 EIKLYGVEPVESAVLSGGKP---GPHKIQGIGAG--F--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SS 218 (270)
Q Consensus 147 ~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~--~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~s 218 (270)
+++||||||++++.+....+ .....++++.+ . ..+.+.++++|+.+.|+|+|+++++++|++++||++|| ||
T Consensus 210 ~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ys 289 (331)
T PRK03910 210 DIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYT 289 (331)
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccH
Confidence 99999999998865432111 01122233322 1 12345678899999999999999999999999999999 59
Q ss_pred HHHHHHHHHHhhcCCC-CCCeEEEEecCCCCC
Q 024252 219 GAATAAAIQIAKRPEN-AGKLIVVVFPSFGER 249 (270)
Q Consensus 219 g~alaa~~~~~~~~~~-~~~~vv~i~t~gg~~ 249 (270)
|+++++++++.++... ++++||+|+|+ |+.
T Consensus 290 g~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G~~ 320 (331)
T PRK03910 290 GKAMAGLIDLIRQGRFKKGGNVLFIHTG-GAP 320 (331)
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEECC-ChH
Confidence 9999999998876653 57899999854 663
|
|
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=280.18 Aligned_cols=234 Identities=40% Similarity=0.593 Sum_probs=184.2
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|+++| .++|+++|+||||+|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++. +++++.+.+.
T Consensus 48 l~~a~~~~-----~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~ 120 (306)
T PF00291_consen 48 LSRAKEKG-----GRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQ 120 (306)
T ss_dssp HHHHHHTT-----TSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHH
T ss_pred hhhccccc-----cceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--cccccccccc
Confidence 45566663 5679999999999999999999999999999999999999999999999999985 3344444443
Q ss_pred HHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCE--EEEecCCchhHHHHHHHhhh--cCCCeEEEE
Q 024252 82 EIRDKT-----PNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA--LVSGIGTGGTVTGAGKYLKE--HNPEIKLYG 152 (270)
Q Consensus 82 ~~~~~~-----~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~--iv~~vG~Gg~~aGi~~~~~~--~~~~~~vig 152 (270)
+++++. +..+.++|+ ++.+.+.||.++++||++|+. .||+ ||+|+|+||+++|++.+++. . |++|+|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vig 197 (306)
T PF00291_consen 121 ELAKERAELLSPFNGELNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIG 197 (306)
T ss_dssp HHHHHHHHHHHHSTTEESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEE
T ss_pred cccccccccccccccccCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-cccccee
Confidence 333321 001115677 445558999999999999997 6665 99999999999999999999 7 8999999
Q ss_pred EecCCCcccc----CCCC----CCcccccCCCCC-Ccc----ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHH
Q 024252 153 VEPVESAVLS----GGKP----GPHKIQGIGAGF-IPG----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSG 219 (270)
Q Consensus 153 V~~~~~~~~~----~~~~----~~~~~~gl~~~~-~~~----~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg 219 (270)
|++.+++++. .+.. ..+.+.+++.+. .+. .+.+++.++++.|+|+|+.+++++|++++|+++||+++
T Consensus 198 v~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a 277 (306)
T PF00291_consen 198 VEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSA 277 (306)
T ss_dssp EEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHH
T ss_pred eeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHH
Confidence 9999997764 2332 113455776654 222 24456777889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---CCCCeEEEEecC
Q 024252 220 AATAAAIQIAKRPE---NAGKLIVVVFPS 245 (270)
Q Consensus 220 ~alaa~~~~~~~~~---~~~~~vv~i~t~ 245 (270)
+++++++++.++.. .++++||+|+||
T Consensus 278 ~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 278 AALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 99999999887764 378999999975
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=277.53 Aligned_cols=237 Identities=21% Similarity=0.289 Sum_probs=176.1
Q ss_pred CHHHHHHcCCCCCCCcEEE--eeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCCCCC---hH
Q 024252 1 MIADAEEKGLIRPGESVLI--EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDPARG---MK 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv--~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-k~~~~~~~Ga~v~~~~~~~~---~~ 74 (270)
||.+|+++|. ++|| ++|+||||+|+|++|+++|++|++|+|...+.. +...++.+||+++.++...+ .+
T Consensus 61 ~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~ 135 (329)
T PRK14045 61 LLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMK 135 (329)
T ss_pred HHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHH
Confidence 4566777763 5677 589999999999999999999999999865433 66678999999998874322 23
Q ss_pred HHHHHHHHHHHhCCCcccc-CCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEE
Q 024252 75 GAVQKAEEIRDKTPNSYVL-QQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKL 150 (270)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~v 150 (270)
.+.+.+.++.++.+..|++ +++.|+.++ .|+.+...||++|++ ..+|+||+|+|||||++|+++++|..+|++||
T Consensus 136 ~~~~~~~~l~~~~~~~~~~p~~~~n~~~~-~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kV 214 (329)
T PRK14045 136 YAEEVAEELKGEGRKPYIIPPGGASPVGT-LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRV 214 (329)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCchhHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeE
Confidence 4555666666555445554 455677774 555555559999996 36999999999999999999999999999999
Q ss_pred EEEecCCCccccCCCC-----CCcccccCCCCC-CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHH
Q 024252 151 YGVEPVESAVLSGGKP-----GPHKIQGIGAGF-IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATA 223 (270)
Q Consensus 151 igV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~ala 223 (270)
|+|+|.+......++. ....+.+++.+. .+... +.+.|++..++ +|+++++++|++++||++|| |||++++
T Consensus 215 igv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~ 292 (329)
T PRK14045 215 VGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELY-DYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFY 292 (329)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEec-ccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHH
Confidence 9999976332111100 112234444332 23223 33347755666 79999999999999999999 9999999
Q ss_pred HHHHHhhcCCCCCCeEEEEecCC
Q 024252 224 AAIQIAKRPENAGKLIVVVFPSF 246 (270)
Q Consensus 224 a~~~~~~~~~~~~~~vv~i~t~g 246 (270)
++++++++.. .+++||+|||||
T Consensus 293 a~~~~~~~~~-~~~~iv~ihtGG 314 (329)
T PRK14045 293 GLMDLAKKGE-LGEKILFIHTGG 314 (329)
T ss_pred HHHHHHHcCC-CCCCEEEEECCC
Confidence 9999998764 368999999776
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=290.59 Aligned_cols=236 Identities=22% Similarity=0.278 Sum_probs=177.9
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEE-IRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.. .++.++.+.+.+ +..+.++.+
T Consensus 321 vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~ 400 (610)
T PRK13803 321 IIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTH 400 (610)
T ss_pred EEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcE
Confidence 456789999999999999999999999999864 256888999999999999852 346666554444 434444566
Q ss_pred ccCCCC---C--CCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc---
Q 024252 92 VLQQFE---N--PANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159 (270)
Q Consensus 92 ~~~~~~---~--~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~--- 159 (270)
|++++. + |.++..||++++.||.+|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++.
T Consensus 401 y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~ 479 (610)
T PRK13803 401 YLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNT 479 (610)
T ss_pred EEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCccc
Confidence 664432 2 333335899999999999842 599999999999999999999964 789999999999862
Q ss_pred -----cccCCCCC-------------------Cc-ccccCCCCCC-cc--ccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 160 -----VLSGGKPG-------------------PH-KIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 160 -----~~~~~~~~-------------------~~-~~~gl~~~~~-~~--~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
++..+++. .+ ...|+..+.+ |. .+.....++.+.|+|+|+++++++|++++|
T Consensus 480 ~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eG 559 (610)
T PRK13803 480 GEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEG 559 (610)
T ss_pred ccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcC
Confidence 23333221 01 1123322111 11 122344567999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+++++||+++++++++..+. .++++||+++||+|+||++++
T Consensus 560 i~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 560 IIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred CccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHHH
Confidence 999999999999999875442 357899999999999998853
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=263.02 Aligned_cols=233 Identities=24% Similarity=0.298 Sum_probs=196.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.+|+++||||+|.|+|+++++.|++|+|++|.+ ++..|+.+|..+|++++.+++ +++++.+.+++++++. ++++..
T Consensus 127 ~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~ 203 (411)
T COG0498 127 KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAV 203 (411)
T ss_pred CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-Cceeec
Confidence 479999999999999999999999999999998 999999999999999999997 6899999999999865 556666
Q ss_pred CCCCCCchhhhhhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCC------eEEEEEecCCCccccCC-CC
Q 024252 95 QFENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLSGG-KP 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~------~~vigV~~~~~~~~~~~-~~ 166 (270)
..-||.. +.||+|+++||++|++ ..||+|++|+|+||++.|++.+|++..|. ++..+|+++++.+.... +.
T Consensus 204 nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~ 282 (411)
T COG0498 204 NSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKE 282 (411)
T ss_pred cccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccc
Confidence 6677776 7899999999999997 47999999999999999999999998764 78899999998776432 11
Q ss_pred ----CCcccccCCCCCCccccc------cccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCC
Q 024252 167 ----GPHKIQGIGAGFIPGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAG 236 (270)
Q Consensus 167 ----~~~~~~gl~~~~~~~~~~------~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~ 236 (270)
..+...+|..+ .|.++. ++..+..+.|||+|++++++++++++|+++||+||+++++++++.++...++
T Consensus 283 ~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~ 361 (411)
T COG0498 283 GRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPD 361 (411)
T ss_pred ccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCC
Confidence 11222333322 243332 2234569999999999999999999999999999999999999988622567
Q ss_pred CeEEEEecCCCCCCcch
Q 024252 237 KLIVVVFPSFGERYLSS 253 (270)
Q Consensus 237 ~~vv~i~t~gg~~~~~~ 253 (270)
+++|+++|++|.|+.+.
T Consensus 362 ~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 362 ETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CeEEEEecCCcccChhH
Confidence 89999999999999886
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=209.47 Aligned_cols=236 Identities=21% Similarity=0.244 Sum_probs=182.0
Q ss_pred CCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHH
Q 024252 11 IRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM----SLERRMVLLAFGAELVLTDPARGM--KGAVQKAEE 82 (270)
Q Consensus 11 l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~----~~~k~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~ 82 (270)
+++|++++|++.+ .||.+++|++|+++|++|+.++.... -..++...+.+|+++..++...+. +...+..++
T Consensus 60 l~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e 139 (323)
T COG2515 60 LRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAE 139 (323)
T ss_pred hhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHH
Confidence 4556899999965 99999999999999999999998754 233677778899999999976555 333344444
Q ss_pred HHHhCCCcccc-CCCC-CCCchhhhhhchHHHHHHhhC--CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCC
Q 024252 83 IRDKTPNSYVL-QQFE-NPANPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 158 (270)
Q Consensus 83 ~~~~~~~~~~~-~~~~-~~~~~~~G~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 158 (270)
..++.++..|+ +... ||.. ..||...+.||.+|.. -++|+||+++|||||.||++.++....++.+|||+....+
T Consensus 140 ~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~ 218 (323)
T COG2515 140 EVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSAD 218 (323)
T ss_pred HHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCC
Confidence 44444454444 4444 4443 5699999999999986 4799999999999999999999999999999999988877
Q ss_pred ccccCCCC---CCcccccCCCC-CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHHHHHhhcCC
Q 024252 159 AVLSGGKP---GPHKIQGIGAG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE 233 (270)
Q Consensus 159 ~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~~~~~~~~~ 233 (270)
......+. ..+.++.++.+ ...+.+..+|....|.++.+|.+++++.+++.|||++|| ++++++.+++++++++.
T Consensus 219 ~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~ 298 (323)
T COG2515 219 PEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGE 298 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhccc
Confidence 54321111 11222223322 223456678899999999999999999999999999999 89999999999999887
Q ss_pred -CCCCeEEEEecCCC
Q 024252 234 -NAGKLIVVVFPSFG 247 (270)
Q Consensus 234 -~~~~~vv~i~t~gg 247 (270)
.++++|++|||||-
T Consensus 299 f~~~~~vLfiHtGG~ 313 (323)
T COG2515 299 FPDGSPVLFIHTGGA 313 (323)
T ss_pred CCCCCceEEEEcCCc
Confidence 46677899997763
|
|
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=217.18 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=174.4
Q ss_pred CcEEEeeCCcHHHHHH-HHHHHHcCCcEEEEeCCC-CCHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHHHhC--
Q 024252 15 ESVLIEPTSGNTGIGL-AFMAAAKGYRLIITMPAS-MSLERRMVLLAF-GAEL--VLTDPARGMKGAVQKAEEIRDKT-- 87 (270)
Q Consensus 15 ~~~vv~aSsGN~g~al-A~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-- 87 (270)
..+|+++||||+|.|+ |.++.+.|++|+|++|++ ++..++.+|..+ |++| +.+++ +++++.+.+.++.++.
T Consensus 131 ~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~ 208 (462)
T PRK09225 131 KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEEL 208 (462)
T ss_pred CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhh
Confidence 5689999999999998 799999999999999996 999999999999 9988 45554 6888888887765541
Q ss_pred ---CCccccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 88 ---PNSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
-+++-.+.. |+.. +.||.++++|+++|+.. .||.|++|+|+||++.|.+.+.+.-.|-+|+|+++ ..++++
T Consensus 209 ~~~~~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l 285 (462)
T PRK09225 209 KEKLKLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVL 285 (462)
T ss_pred hhcCceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHH
Confidence 134444443 6665 78999999999999964 38999999999999999999844444667999997 333333
Q ss_pred c----CCCCC-----CcccccCCCCCCcccccc------------------c---cCC---------------cEEEcCH
Q 024252 162 S----GGKPG-----PHKIQGIGAGFIPGVLDV------------------N---LLD---------------ETVQISS 196 (270)
Q Consensus 162 ~----~~~~~-----~~~~~gl~~~~~~~~~~~------------------~---~~~---------------~~~~V~~ 196 (270)
. .|... .+...++..+ .|.++.+ . .-. ..+.|+|
T Consensus 286 ~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD 364 (462)
T PRK09225 286 TRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSD 364 (462)
T ss_pred HHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECH
Confidence 1 23211 1122222222 2333222 0 011 5688999
Q ss_pred HHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 197 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 197 ~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+|+.++++++++++|+++||+||++++++.+++. +++++|++.|++|.|+.+.+
T Consensus 365 ~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 365 EETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCHHHH
Confidence 9999999999999999999999999999987632 45689999999999987754
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=212.52 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=176.8
Q ss_pred CCcEEEeeCCcHHHHH-HHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC-
Q 024252 14 GESVLIEPTSGNTGIG-LAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT- 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~a-lA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~- 87 (270)
+..+|+++||||+|.| ++.++.+.|++|+|++|++ +++.++.+|..+|+ +++.+++ +++++.+.+.++.++.
T Consensus 131 ~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~ 208 (460)
T cd01560 131 ERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADED 208 (460)
T ss_pred CCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChh
Confidence 4668999999999999 5899999999999999986 99999999999997 7788886 6888888888775442
Q ss_pred ----CCccccCCCCCCCchhhhhhchHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 88 ----PNSYVLQQFENPANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 88 ----~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
-+++-.+. -|+.. +.||.+..+|+++|+.. .|+.|+||+|+||++.|.+.+.+.-.|-+|+|++..++..
T Consensus 209 ~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~i 286 (460)
T cd01560 209 FNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDV 286 (460)
T ss_pred hHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChH
Confidence 13333444 35655 78999999999999963 5899999999999999999997655577899997654432
Q ss_pred c---ccCCCC--CCcccccCCCCC---Ccccccc---cc---C------------------------------CcEEEcC
Q 024252 160 V---LSGGKP--GPHKIQGIGAGF---IPGVLDV---NL---L------------------------------DETVQIS 195 (270)
Q Consensus 160 ~---~~~~~~--~~~~~~gl~~~~---~~~~~~~---~~---~------------------------------~~~~~V~ 195 (270)
. +..|.. .+.....++.++ .|.++.+ .+ - -..+.|+
T Consensus 287 l~~~~~~G~y~~~~~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vs 366 (460)
T cd01560 287 LRRFFKTGRYDRRESLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVS 366 (460)
T ss_pred HHHHHHcCCCcCCCCCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEEC
Confidence 1 112322 111222222211 2333221 00 0 1468999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+|+.++++.+++++|+++||+||++++++.++.++ +++++|++.|++|.|+.+.+
T Consensus 367 D~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~v 422 (460)
T cd01560 367 DEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHPAKFPEAV 422 (460)
T ss_pred HHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCcccCHHHH
Confidence 999999999999999999999999999999887654 34678999999999987753
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=195.23 Aligned_cols=239 Identities=26% Similarity=0.323 Sum_probs=175.0
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHH-hCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRD-KTPN 89 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~-~~~~ 89 (270)
.+.|.+...|.||.|+|.+|+++|++|+|||.... ...++.+|+.+||+|+.|.. +..+.++...+.+.+- .-..
T Consensus 104 ~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ 183 (396)
T COG0133 104 TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVED 183 (396)
T ss_pred ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhcccc
Confidence 34677888899999999999999999999998632 34567789999999998864 4567788877765543 3334
Q ss_pred ccccC-----CCCCCCchhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc-
Q 024252 90 SYVLQ-----QFENPANPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA- 159 (270)
Q Consensus 90 ~~~~~-----~~~~~~~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~- 159 (270)
.+|+. |..-|......++.||.|.-+|+. ..||+|+.|+|+|++..|+..-|-. .+++++||||+.+.-
T Consensus 184 ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi 262 (396)
T COG0133 184 THYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGI 262 (396)
T ss_pred ceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCcc
Confidence 55542 222244445689999999988863 3599999999999999999888765 467999999998753
Q ss_pred -------cccCCCCCC-----c--------c---cccCCCCC----C-ccc--cccccCCcEEEcCHHHHHHHHHHHHHH
Q 024252 160 -------VLSGGKPGP-----H--------K---IQGIGAGF----I-PGV--LDVNLLDETVQISSEEAIETAKLLALK 209 (270)
Q Consensus 160 -------~~~~~~~~~-----~--------~---~~gl~~~~----~-~~~--~~~~~~~~~~~V~~~e~~~a~~~l~~~ 209 (270)
++..|++.- + . ..+|+.+. + |.. +...-.-+.+.|+|+|++++.+.|.+.
T Consensus 263 ~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~ 342 (396)
T COG0133 263 ETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRL 342 (396)
T ss_pred CCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHh
Confidence 333333310 0 0 01222221 0 111 112223468899999999999999999
Q ss_pred cCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchhh
Q 024252 210 EGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 255 (270)
Q Consensus 210 ~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~~ 255 (270)
|||+..-.|+.|++.++++..+.. +++.+|+-+++.|+|++.++.
T Consensus 343 EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv~ 387 (396)
T COG0133 343 EGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTVA 387 (396)
T ss_pred cCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHHH
Confidence 999999999999999999986653 556788888889999988643
|
|
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=174.04 Aligned_cols=245 Identities=24% Similarity=0.299 Sum_probs=175.8
Q ss_pred CCcEEEee-CCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCCCC----------------h
Q 024252 14 GESVLIEP-TSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARG----------------M 73 (270)
Q Consensus 14 g~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~~~~----------------~ 73 (270)
|...|+|= ..|.+|.|++++|+.+|++|+|||-+.. .+-+..+|+.|||+|+..+.... +
T Consensus 126 g~~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSL 205 (432)
T COG1350 126 GAKRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSL 205 (432)
T ss_pred CceeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchh
Confidence 45555554 5699999999999999999999998733 45677889999999998764211 1
Q ss_pred HHHHHHHHHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHhhhc---C-
Q 024252 74 KGAVQKAEEIRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEH---N- 145 (270)
Q Consensus 74 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~aGi~~~~~~~---~- 145 (270)
.-++..|.+.+-++++. |.+...-| ....|+..+|+|..+|+ +..||.++.|||+|++++|+..-|-.. .
T Consensus 206 GIAISEAiE~al~~~~~kY~lGSVln--hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~ 283 (432)
T COG1350 206 GIAISEAIEYALKNENTKYSLGSVLN--HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGK 283 (432)
T ss_pred HHHHHHHHHHHHhCCCceecchhHHH--HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCC
Confidence 12456666666555433 33333222 23679999999996655 567999999999999999996655332 1
Q ss_pred CCeEEEEEecCCCccccCCCCCC-----------cccccCCCCCCccccc-----------------cccCCcEEEcCHH
Q 024252 146 PEIKLYGVEPVESAVLSGGKPGP-----------HKIQGIGAGFIPGVLD-----------------VNLLDETVQISSE 197 (270)
Q Consensus 146 ~~~~vigV~~~~~~~~~~~~~~~-----------~~~~gl~~~~~~~~~~-----------------~~~~~~~~~V~~~ 197 (270)
...++|+|+|..++.+..|...- ..+-.+|.+++|..+. +.-+-+....+.+
T Consensus 284 ~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~ 363 (432)
T COG1350 284 KETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQE 363 (432)
T ss_pred ceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChH
Confidence 23899999999999987654321 1223555555544322 3344568899999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCC--CCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN--AGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~--~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
|++++.+.|++.|||+..|.|+.|+.++++.+.+.+. +.+.|+|-++|+|.-++ .-|++..+-
T Consensus 364 Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL--~~Y~~yl~g 428 (432)
T COG1350 364 EVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDL--SAYDKYLEG 428 (432)
T ss_pred HHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccch--hhHHHHhhh
Confidence 9999999999999999999999999999998876653 34566666767777444 466666543
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=167.19 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=167.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHH
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQK 79 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~ 79 (270)
+|+-..++-+ +..|.+...|.||.|+|.+|+++|++|+|+|-.+. ...++.+||.+||+|+.+.. ...++++...
T Consensus 162 QallakrlGk-knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~se 240 (477)
T KOG1395|consen 162 QALLAKRLGK-KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSE 240 (477)
T ss_pred HHHHHHHhcc-cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccch
Confidence 4444444443 23567778899999999999999999999998632 45678899999999998874 2234444444
Q ss_pred HHHHHHhC-CCcccc-----CCCCCCCchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCCeE
Q 024252 80 AEEIRDKT-PNSYVL-----QQFENPANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIK 149 (270)
Q Consensus 80 a~~~~~~~-~~~~~~-----~~~~~~~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~ 149 (270)
+-++.-.+ .-.+|+ .|+--|.....-+.+|+.|-..|. +..||.||.|+|+|++.+|+..-|.. ...++
T Consensus 241 a~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~ 319 (477)
T KOG1395|consen 241 AGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVG 319 (477)
T ss_pred hhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhh
Confidence 44333221 112232 122222222346788888876654 34699999999999999999888775 33478
Q ss_pred EEEEecCCCcc--------ccCCCCCC-------cccc---------cCCCCC-----Ccc--ccccccCCcEEEcCHHH
Q 024252 150 LYGVEPVESAV--------LSGGKPGP-------HKIQ---------GIGAGF-----IPG--VLDVNLLDETVQISSEE 198 (270)
Q Consensus 150 vigV~~~~~~~--------~~~~~~~~-------~~~~---------gl~~~~-----~~~--~~~~~~~~~~~~V~~~e 198 (270)
.|+|+..+... +..++... ...+ .|..+. -|. .+......+++.++|.|
T Consensus 320 ~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~e 399 (477)
T KOG1395|consen 320 MIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAE 399 (477)
T ss_pred eeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHH
Confidence 88988776532 22222210 0011 121111 111 11122345799999999
Q ss_pred HHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 199 AIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 199 ~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
.+++.+.|++.|||+..+.+..|+++..++.+.. .+++.||+-+||+|+|++.+
T Consensus 400 clegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 400 CLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred HHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHHH
Confidence 9999999999999999999999999988776554 47889999999999998874
|
|
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=161.18 Aligned_cols=229 Identities=19% Similarity=0.214 Sum_probs=190.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
.|...|+||.|.++-..++.+|++++|-|+.++..+|.+.+|..|.+|+.... +|..+.+.-++.++.+|..||++.-
T Consensus 162 sIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE 239 (443)
T COG3048 162 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDE 239 (443)
T ss_pred eEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEeccc
Confidence 58889999999999999999999999999999999999999999999999984 7899999999999999999999887
Q ss_pred CCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCccccCC---
Q 024252 97 ENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLSGG--- 164 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~~~~~~--- 164 (270)
++... ..||...+..+-.|+.. .|-.|.+|||-||...|++.++|..+ .++.++-+||..+|++.-|
T Consensus 240 ~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~t 318 (443)
T COG3048 240 NSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYT 318 (443)
T ss_pred chhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhh
Confidence 66554 68999999999999842 47799999999999999999999986 5699999999999987521
Q ss_pred -C-----------CCCcccccCCCCCCcc---ccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 165 -K-----------PGPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 165 -~-----------~~~~~~~gl~~~~~~~---~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. ...+-.+|++.+.... .+...+++..|+|+|+...+....|++.+|+.+|||+-+++.+..++.
T Consensus 319 GlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 319 GLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred ccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 1 1234456777665222 234578899999999999999999999999999999888877766553
Q ss_pred hcC------------CCCCCeEEEEecCCCC
Q 024252 230 KRP------------ENAGKLIVVVFPSFGE 248 (270)
Q Consensus 230 ~~~------------~~~~~~vv~i~t~gg~ 248 (270)
+.. +..+-+=+++.|+||.
T Consensus 399 ~~~~g~~~~~~~~~~~~~natHlvWaTGG~M 429 (443)
T COG3048 399 ASVEGYRYRHGFSAEQLNNATHLVWATGGGM 429 (443)
T ss_pred echhHHHHHhhchhhhhcCeeEEEEecCCCc
Confidence 211 1344566888888875
|
|
| >KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.1 Score=42.89 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcc
Q 024252 191 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 191 ~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~ 252 (270)
...||++|..+++...++..+.+++|.+|++.-...+.+.+.. +.-.++++.|.+..|+-+
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aKFa~ 208 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAKFAE 208 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhhhhH
Confidence 4568999999999999999999999999999999998887754 345567777777666544
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.9 Score=34.37 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 024252 27 GIGLAFMAAAKGYRLI-ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 105 (270)
Q Consensus 27 g~alA~aa~~~G~~~~-iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G 105 (270)
|..+.++++.+|.++. -+.+.+--..-++.+...|-.|.++++.. ....+.+..+.++.|+.-.+.-++-+.. ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 5789999999998863 22222223344556677889999999742 3344455666677665433322211111 111
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 106 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 106 ~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
.. +|.+++. ..||.|+++.|+---=.=+ ...+...+..-+++|
T Consensus 90 ~~----~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EE----AIINRINASGPDIVFVGLGAPKQERWI-ARHRQRLPAGVIIGV 133 (172)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEE
Confidence 23 3444432 3599999999986544222 233333333334444
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.2 Score=38.00 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+++++..++||.+ |....-|-.|....-+|+.+|.+++.+ +.+..|++..+.+||+.+....
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 3677788999975 788888878888888888899887777 4567889999999998887764
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.4 Score=35.93 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=43.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|.++.-.|+.+|.+++.+. .++.|.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 457788887766776789999999999999999755443 345778888889985443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.75 E-value=3.7 Score=36.44 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=42.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
++.+..+++|.+.+| ..+|..|.+++.+|+.+|.+++++ +.++.|++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV-~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIV-IGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 455567788876444 445999999999999999964433 23567888888999975443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.44 E-value=4.3 Score=36.89 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
++.+..+.+|.+.+| ..+|--|..++..|+.+|.+.+++.. ..+.|++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 455677888876555 67799999999999999988766432 3467888889999974
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.71 E-value=3.5 Score=36.64 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+|.+.+|. .+|.-|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 4577765555 5799999999999999997666655445678888999999985
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.68 E-value=5 Score=35.53 Aligned_cols=57 Identities=28% Similarity=0.481 Sum_probs=45.0
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.+.+++|.+.+|...+|.-|..+--.|+.+|...++.+. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 578899998889999999999999999999984444432 346667899999976654
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.58 E-value=7.7 Score=34.28 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+....+.+|.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..|.+.++.+|++.++
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 4556677887655654 688999999999999985444442 355667777778875443
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.50 E-value=4.6 Score=34.63 Aligned_cols=58 Identities=31% Similarity=0.323 Sum_probs=39.6
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++++....+|.+. +....|.-|..++..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~V-lV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRRV-LVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCEE-EEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 4444445577654 444668899998889999998744444 345677888888888543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=86.46 E-value=7 Score=31.10 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 024252 27 GIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH 105 (270)
Q Consensus 27 g~alA~aa~~~G~~~~iv~p~-~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G 105 (270)
|..+.++++.+|.+..--++. +--..-++.+...+..|.++++.. +...+.++.+.++.|+...+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 568899999999882222222 111233455666789999999642 3333444566667666443322222221 111
Q ss_pred hhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 106 YETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 106 ~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
. .+|.+++. ..||.|+++.|+---=.=+ ...+...+..-+++|
T Consensus 88 ~----~~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 E----EEIIERINASGADILFVGLGAPKQELWI-ARHKDRLPVPVAIGV 131 (171)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEe
Confidence 1 12444443 3599999999986544222 333333344445555
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=86.45 E-value=8.7 Score=34.17 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHT 225 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceE
Confidence 445678888776665 5688999999999999986444443 34567888888888543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.5 Score=35.04 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=43.4
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+++.+.+.+|.+.+|...+|..|.+++..|+.+|.+++++.+. . ++..++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3456778888887777777999999999999999996555432 2 6777788898643
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=86.16 E-value=5 Score=35.20 Aligned_cols=60 Identities=23% Similarity=0.177 Sum_probs=45.4
Q ss_pred HcCCCCCCCcEEEeeCC---cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS---GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... +|.++|+..+++++|++++++.|+.- ++..+..++.+|+++...+
T Consensus 144 ~~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 346554 444 555555 69999999999999999999999864 5555667777899888766
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.53 E-value=9.7 Score=33.63 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=42.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+....+.+|.+.+| ..+|..|.++...|+.+|...++++.. ++.|...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 35667888876555 667999999999999999876666544 4567777788888544
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.35 E-value=4.4 Score=35.74 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++.+..+++|.+.+|.. .|.-|.+++..|+.+|.+++++. .++.|++.++.+||+.+
T Consensus 157 ~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASA 213 (329)
T ss_pred HHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCcee
Confidence 44567788887655554 58889998999999998744432 24567888899999654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=85.34 E-value=8.2 Score=33.67 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=43.0
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|--|.+++..|+..|.+++++.+ +..|.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 5677888877666666799999999999999987555433 45678888889986544
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=85.14 E-value=8.6 Score=34.41 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=40.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+...+++|.+.+|. .+|--|..++..|+.+|.+.++++. .++.|++.++.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceE
Confidence 45677888776665 5688999999999999985344432 35677888888998543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.71 E-value=7.3 Score=34.44 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++.+....+|.+.+|. .+|.-|++....++.+|.+.++++. .++.|++..+.+|++.++
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3444445567665554 5699999999999999986444443 346788888889987544
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.35 E-value=11 Score=33.12 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=42.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~v~ 65 (270)
+.+.+++|.+.+|...+|.-|.++...|+.+|.++++..+ +..|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 4567888888777777899999999999999998554432 3577777777 888543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=83.93 E-value=6.2 Score=32.66 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=42.2
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|+..+|+.|+.++-+....+.+++++++.. +..+.+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 5778899999999999999999999998874 55567778899999986653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=83.14 E-value=11 Score=32.96 Aligned_cols=59 Identities=29% Similarity=0.374 Sum_probs=40.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++.+..+.+|.+.+|. .+|--|.+++..|+.+|.+-++++. .++.|++.++.+|++.++
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 4455567788776665 5688999999999999988333332 345677777888885443
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.99 E-value=34 Score=30.53 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=46.2
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-cCCEEEEeCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVLTDP 69 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~-~Ga~v~~~~~ 69 (270)
|..++....+ +|+...+|.-|...+..++.+|...+|++. .++.|++..+. .|++++....
T Consensus 161 a~~~~~~~~~--~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 161 AERAAVRPGG--TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred hhccCCCCCC--EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecCc
Confidence 4444444444 699999999999999999999998888873 46778888876 7777666554
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=13 Score=33.09 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|--|..+...|+.+|.+++++. .+..|.+.++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 346788887766777779999998889999998744432 3456777776 68885443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=8.9 Score=33.84 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+...+.+|.+.+|. .+|..|.++...|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 445667788765555 5789999999999999987554443 24567777788888543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.39 E-value=10 Score=33.48 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=47.0
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++.+-.+.||+..-|.--.| .|.----+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 173 pLk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 45666677998644444445 8888888999999999988433 44678889999999988775
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.34 E-value=15 Score=32.47 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|.+++.+++|.+ ++.-..|--|..+-..|+.+|-+=++++. ..+.|++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 4778999999975 88899999999999999999987666654 467888888899999876654
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=82.25 E-value=13 Score=32.06 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+....+.+|.+.+|...+|.-|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344667777765555567888888888888888876555332 3445555556663
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.21 E-value=7.9 Score=33.57 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=39.5
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+.+.+++|.+.+|. .+|-.|.+++..|+.+|.+.+++ . .++.+.+.++.+|++.
T Consensus 147 ~~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 147 ILEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVET 202 (319)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcE
Confidence 3456778888776665 47888888888999999884443 2 2356777777788754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.99 E-value=14 Score=32.43 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=37.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
..-.+.+|.+.+|.. +|..|.+++..|+.+|.+.+++.+ +..++..++.+|++-
T Consensus 157 ~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 157 RNSGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 344667776655554 899999999999999987554433 345677778888743
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.75 E-value=17 Score=32.10 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+....+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..|....+.+|++-
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 214 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATD 214 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCce
Confidence 456678888776665 57899999999999999865554433 346677778888743
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.54 E-value=16 Score=32.03 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=36.5
Q ss_pred HcCCCCCC--CcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 024252 7 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g--~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~-~Ga~v~~ 66 (270)
+.+.+++| .+.+|...+|.-|.++...|+.+|. +++++.+ +..|.+.++. +|++-++
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi 206 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAI 206 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEE
Confidence 34556665 5555655668888888888888887 4544432 3456666654 8875543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=81.41 E-value=7.8 Score=32.09 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHHHcCCCCCCCcEEEee-CCc---HHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCC
Q 024252 4 DAEEKGLIRPGESVLIEP-TSG---NTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGA 62 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~a-SsG---N~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga 62 (270)
.|+..|+.. +.+|++ |.| .+.++||.||++-|=..+.++|.... ..-.+.|..+|.
T Consensus 34 SAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 588888765 346655 555 36899999999999999999998654 344555555564
|
The function of this family is unknown. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.38 E-value=14 Score=33.52 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=47.7
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+..+..+||..+..+|+-+-..|=.-.|++|.-+.....+.+-..||+.+++|-+
T Consensus 49 ~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 49 VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 56788889999999998886456666789999989999999999999999999853
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.06 E-value=17 Score=31.86 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=37.6
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
...+.+|...+|...+|..|.+++..|+.+|.+++++.+ ++.+.+.++.+|++-
T Consensus 160 ~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 213 (341)
T cd08297 160 KAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADA 213 (341)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 346777777666667777999999999999987655533 345666667777643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.82 E-value=18 Score=31.70 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=39.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
....+.+|...+| ..+|..|.++...|+..|.+.++.+.. +..|...++.+|++
T Consensus 162 ~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 3556778876666 458999999999999999875555543 34567777888884
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=80.80 E-value=3.3 Score=37.08 Aligned_cols=56 Identities=25% Similarity=0.218 Sum_probs=44.4
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+.++..+||..+.-+|+.+..++=.-.|++|..+.......+...|+++++++-+
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 56799999999999999988443333788899989999999999999999999853
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.57 E-value=8.9 Score=28.33 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEe
Q 024252 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 154 (270)
Q Consensus 120 ~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~ 154 (270)
.+|.+|-++|++.++.-....+ .+.-+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLL---RPGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHE---EEEEEEEEES
T ss_pred cceEEEEecCcHHHHHHHHHHh---ccCCEEEEEE
Confidence 5899999999877665544443 3444555553
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 270 | ||||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-116 | ||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-105 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 4e-91 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 5e-91 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 5e-77 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 6e-77 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 2e-75 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 6e-75 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 2e-69 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 2e-69 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 1e-67 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 1e-66 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 3e-62 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 6e-62 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 1e-59 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 1e-54 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 1e-54 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 5e-49 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 5e-49 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 2e-47 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 1e-46 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 5e-46 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 2e-45 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 4e-42 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 1e-41 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 4e-31 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 4e-31 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 2e-30 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 2e-30 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 3e-08 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 3e-08 |
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 270 | |||
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 0.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 0.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 0.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 0.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 1e-180 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 1e-180 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 1e-179 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 1e-173 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 1e-169 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 1e-160 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 1e-155 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-147 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-144 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-143 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 9e-18 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 3e-15 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 8e-15 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 5e-14 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 3e-13 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 5e-13 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 4e-12 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 6e-12 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 1e-11 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 2e-10 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 6e-10 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 2e-09 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 4e-09 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 2e-08 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 2e-06 |
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 531 bits (1371), Expect = 0.0
Identities = 218/269 (81%), Positives = 248/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 113 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 173 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V
Sbjct: 233 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 293 AIFPSFGERYLSTVLFDATRKEAEAMTFE 321
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 528 bits (1363), Expect = 0.0
Identities = 139/266 (52%), Positives = 187/266 (70%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+ AE++G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L F
Sbjct: 58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIF 117
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAE++LT A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T
Sbjct: 118 GAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHN 177
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D ++G+GTGGT+TG + LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P
Sbjct: 178 VDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVP 237
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VLD +L+DE + ++ ++AIETA L +G+ G S GA AA++IA+RPE GK IV
Sbjct: 238 DVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIV 297
Query: 241 VVFPSFGERYLSSVLFESVKKEAESM 266
V PSFGERYLS+ L+ SV+ E S+
Sbjct: 298 TVIPSFGERYLSTTLYRSVRDEVSSL 323
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 199/269 (73%), Positives = 236/269 (87%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AF
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF 220
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLTDPA+GM GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK
Sbjct: 221 GAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGK 280
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D V+GIGTGGT+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP
Sbjct: 281 VDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIP 340
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
LD ++DE + ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI
Sbjct: 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
VVFPSFGERYLS+ LF+S+++E E M E
Sbjct: 401 VVFPSFGERYLSTPLFQSIREEVEKMQPE 429
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 512 bits (1320), Expect = 0.0
Identities = 154/259 (59%), Positives = 197/259 (76%), Gaps = 1/259 (0%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ GLI+P ++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+
Sbjct: 54 MLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY 112
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+LT A GM GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK
Sbjct: 113 GAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGK 172
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+D +V+G+GTGGT+TG + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P
Sbjct: 173 VDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVP 232
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VLD +L+DE + + +E+A+ A+ LA +EGLLVGISSGAAT AA+Q+A+RPENAGKLIV
Sbjct: 233 PVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIV 292
Query: 241 VVFPSFGERYLSSVLFESV 259
VV P FGERYLS+ LF V
Sbjct: 293 VVLPDFGERYLSTPLFADV 311
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 497 bits (1281), Expect = e-180
Identities = 120/267 (44%), Positives = 174/267 (65%), Gaps = 4/267 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A + G ++PG +IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AF
Sbjct: 65 IVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF 123
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
GAEL+LT+ +GM GA+++ ++ + P Y QF NP N H+ T EIW+ T G
Sbjct: 124 GAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDG 182
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
++D +VS +GT GTV G + LKE IK+ VEP ESAVL G GPH IQGIGAGFI
Sbjct: 183 EVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFI 242
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P + +DE + I +++A + A+ + +G++ G+SSGAA A ++ A++PEN GK I
Sbjct: 243 PDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTI 302
Query: 240 VVVFPSFGERYLSSVLFESVKKEAESM 266
V++ PS GERYLS+ L++ +K E +
Sbjct: 303 VIIVPSCGERYLSTDLYK-IKDEGTKI 328
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 495 bits (1278), Expect = e-180
Identities = 146/268 (54%), Positives = 194/268 (72%), Gaps = 9/268 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ G + G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L
Sbjct: 49 MVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 107
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
G LVLT+ A+GMKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T G
Sbjct: 108 GVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDG 167
Query: 120 KIDALVSGIGTGGTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQ 172
K+D +V+G+GTGG++TG + +K + +I VEPVES V+S KPGPHKIQ
Sbjct: 168 KVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ 227
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIGAGFIP LD++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK P
Sbjct: 228 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 287
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFESVK 260
E A KLIVV+ PS ERYLS+ LFE ++
Sbjct: 288 EFADKLIVVILPSASERYLSTALFEGIE 315
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 493 bits (1272), Expect = e-179
Identities = 139/258 (53%), Positives = 184/258 (71%), Gaps = 3/258 (1%)
Query: 1 MIADAEEKGLIRPG-ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 59
MI DAEE+G++RPG V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL A
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKA 106
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119
FGAELVLTDP R M A ++A ++ + +++ QF+NPAN + HYETTGPE+++ G
Sbjct: 107 FGAELVLTDPERRMLAAREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEG 165
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
+IDA V G GTGGT+TG G+YLKE P +K+ VEP S VLSGGK G H QG+G GFI
Sbjct: 166 RIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFI 225
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P LD++LLD +Q+ E+A A+ LA +EGL +G+SSG AA+Q+A R GK +
Sbjct: 226 PENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRV 284
Query: 240 VVVFPSFGERYLSSVLFE 257
+ P G +YLS+ L+
Sbjct: 285 ACISPDGGWKYLSTPLYA 302
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 480 bits (1237), Expect = e-173
Identities = 143/257 (55%), Positives = 193/257 (75%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE+ G ++PG ++EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+
Sbjct: 52 MIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAY 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT A+GM+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G +
Sbjct: 111 GAELVLTPGAQGMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQ 169
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
+DA V+G+GTGGT+TGAGK L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P
Sbjct: 170 LDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVP 229
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
+LD ++ D + +++EEA A+ A +EG+L GISSGAA AA+++AK GK ++
Sbjct: 230 DILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVL 288
Query: 241 VVFPSFGERYLSSVLFE 257
+ PS GERYLS+ L++
Sbjct: 289 AIIPSNGERYLSTPLYQ 305
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 468 bits (1208), Expect = e-169
Identities = 134/255 (52%), Positives = 179/255 (70%), Gaps = 6/255 (2%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++ G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL
Sbjct: 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT GMKGAV+KA EI + +++L QFENP N H TTGPEI K +
Sbjct: 111 GAELVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQ 169
Query: 121 IDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
IDA V+G+GTGGT++G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+
Sbjct: 170 IDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFV 229
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P +LD +++DE + + EEA E A+ LA KEGLLVGISSGA AAA+++A++ + +
Sbjct: 230 PKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-V 288
Query: 240 VVVFPSFGERYLSSV 254
V V P ERYLS +
Sbjct: 289 VTVAPDHAERYLSIL 303
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-160
Identities = 96/269 (35%), Positives = 147/269 (54%), Gaps = 11/269 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI AE GL+RPG + ++EPTSGNTGI LA A KGYRLI MP + S+ERR +L +
Sbjct: 60 MIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 118
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA+++ + G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +
Sbjct: 119 GAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PE 177
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I V+G+GT GT+ G G++L+EH +K+ EP G + ++ + GF+P
Sbjct: 178 ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVP 230
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK--L 238
+ D +L + + +A+ + L EG+ GIS+GA AA+ + AG+
Sbjct: 231 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 290
Query: 239 IVVVFPSFGERYLSSVLFESVKKEAESMV 267
I +V G +YLS+ + +AE+ +
Sbjct: 291 IALVVADAGWKYLSTGAYAGSLDDAETAL 319
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 432 bits (1113), Expect = e-155
Identities = 108/257 (42%), Positives = 163/257 (63%), Gaps = 11/257 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+
Sbjct: 107 GAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGR 165
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS +GT GT+TG ++++E + + + G++P E + + G + P ++P
Sbjct: 166 ITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLP 218
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG A A A+++A N ++V
Sbjct: 219 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVV 276
Query: 241 VVFPSFGERYLSSVLFE 257
+ G+RYLS+ +F
Sbjct: 277 AIICDRGDRYLSTGVFG 293
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 415 bits (1068), Expect = e-147
Identities = 63/259 (24%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I+ + + G S++ + TS N G+ L+ +A GYR + +P + +++
Sbjct: 134 IISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL 190
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GT 117
GA++++ A + + + K + QF N AN + H T EI+
Sbjct: 191 GAQVIVDPEAPSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRG 249
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAG 177
G + + +GT G ++ A YL+ +P I+ V+P + + G I+ + G
Sbjct: 250 GLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETG 302
Query: 178 FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 237
+ + +++ +++ EEA+E +A +GL++G S GAA A + A +
Sbjct: 303 MLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPG 361
Query: 238 LIVVVFPSFGERYLSSVLF 256
VVV P G +YLS V
Sbjct: 362 DYVVVVPDTGFKYLSLVQN 380
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 412 bits (1062), Expect = e-144
Identities = 98/265 (36%), Positives = 149/265 (56%), Gaps = 10/265 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ DAEE+GL++PG +IEPTSGNTGIGLA A KGY+ II MP MS E+ L
Sbjct: 100 MVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL 158
Query: 61 GAELVLTD---PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GA+++ T +G + A++++ +TPNS VL Q+ N NP HY+ T EI
Sbjct: 159 GAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQL 218
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQ 172
K+D +V GT GT++G G+ +KE P ++ GV+P S + L+ ++++
Sbjct: 219 DNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVE 278
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIG F P V D ++D +I + ++ L +EGLL G SSG A AA++ A++
Sbjct: 279 GIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK- 337
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFE 257
G+ VV+ P Y++ + +
Sbjct: 338 LKKGQRCVVILPDGIRNYMTKFVSD 362
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-143
Identities = 109/265 (41%), Positives = 160/265 (60%), Gaps = 10/265 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++PG +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A
Sbjct: 148 MIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 206
Query: 61 GAELVLTD---PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GAE+V T + V A ++++ PNS++L Q+ N +NP HY+TT EI +
Sbjct: 207 GAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQC 266
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQ 172
GK+D LV+ +GTGGT+TG + LKE P ++ GV+P S + L+ + ++++
Sbjct: 267 DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVE 326
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIG FIP VLD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+
Sbjct: 327 GIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL 386
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFE 257
+ G+ VV+ P Y++ L +
Sbjct: 387 Q-EGQRCVVILPDSVRNYMTKFLSD 410
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 9e-18
Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 38/243 (15%)
Query: 22 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AV 77
++GN G+ + M+A G+++ + M A ++ L + G +V + AV
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE------QDYGVAV 220
Query: 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI--------WKGTGGKIDALVSGIG 129
++ + PN EN + Y G + + G
Sbjct: 221 EEGRKAAQSDPN-CFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCG 279
Query: 130 TGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV----LSGGKPGPHKIQGIG--------- 175
GG G LK + + EP S + G +Q IG
Sbjct: 280 VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADG 339
Query: 176 -----AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAK 230
A G LLD +S + + LA +EG+ + S+ A A ++
Sbjct: 340 LAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCA 399
Query: 231 RPE 233
Sbjct: 400 SVS 402
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 50/250 (20%), Positives = 76/250 (30%), Gaps = 32/250 (12%)
Query: 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 76
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD--MNYDDT 171
Query: 77 VQKAEEIRDKTPNSYVLQQFENPANPKIH------YETTGPEIW---KGTGGKIDALVSG 127
V+ + + V+Q KI Y T E + G ++
Sbjct: 172 VRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 128 IGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV----LSGGKPGPHKIQ------GIG 175
G G G YL + + VEP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 176 AGFIPGVL--DV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS---SGAATAAAIQI 228
G P L ++ N + + A ++L G I SGA +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAA 349
Query: 229 AKRPENAGKL 238
L
Sbjct: 350 VHYHPQRQSL 359
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 8e-15
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 28/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARG 72
G+ ++ ++GNT A AA G + +P +++ + + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD 143
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
++ A ++ P ++ N NP +T EI G D +G
Sbjct: 144 --DCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFI 179
G +T K E P ++ G + +A L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
V ++ + S EE + L+A EG+ V +S A+ A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 234 NAGKLIVVV 242
G +V
Sbjct: 316 ARGSTVVCT 324
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-14
Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 29/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARG 72
G + ++GNT A AA G I+ +PA +L + L GA +V +
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD 135
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
A++ +++ + P + V N NP +T E+ G +G
Sbjct: 136 --DALRLTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKP--GPHKI-QGIGAGFI 179
G +T K P ++ G + +A L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
V +E+ ++ EE + + LA +EG+ +S AA A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 234 NAGKLIVVV 242
+V+
Sbjct: 307 EPESTVVLT 315
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 29/249 (11%)
Query: 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARG 72
G+ +I ++GNT A AA G R + +P ++ + + +GA+++
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD 137
Query: 73 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGT 130
A+ +I + P V N NP +T EI G D +G
Sbjct: 138 --DALNIVRKIGENFPVEIV-----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 131 GGTVTGAGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFI 179
G +T K K P ++ G + +A + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 180 P-GVLDVNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE- 233
+ E+ +S E + KL+A EG+ +S A+ A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 234 NAGKLIVVV 242
G+++
Sbjct: 309 KGGEVVTCT 317
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-13
Identities = 51/299 (17%), Positives = 102/299 (34%), Gaps = 44/299 (14%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLA 59
+++ ++ + ++G+T L+ A+ G I+ +PA +S+ + + +A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGT 117
GA ++ D G ++ EI + P N N +T EI +
Sbjct: 230 NGAFVLSIDTDFD--GCMKLIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQF 282
Query: 118 GGKI-DALVSGIGTGGTVTGAGKYLK--------EHNPEIKLYGVE-----PVESAVLSG 163
++ D ++ G G + K K + P ++ + P+ SG
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 164 GK-----PGPHKI-QGIGAGFIP-GVLDVNLLDET---VQISSEEAIETAKLLALKEGLL 213
K I G V L + V+ ++EE + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMF 400
Query: 214 VGISSGAATAAAIQIAKRPE-NAGKLIVVV-------FPSFGERYLSSVLFESVKKEAE 264
+ +G A A ++ + VVV F Y S+ + + + +
Sbjct: 401 ICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 4e-12
Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 43/244 (17%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN +A A G I MP + +G ++++ D + A+E
Sbjct: 82 SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKE 139
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGIGTGG 132
I ++ + I Y+ T E+++ G +DAL +G GG
Sbjct: 140 ISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFVCLGGGG 186
Query: 133 TVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ-----GIGAGFIPGVL 183
++G+ + P ++YGVEP G G G
Sbjct: 187 LLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-HLGNY 245
Query: 184 --DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSGAATAAAIQIAKRPENAGKL 238
+ +D+ + +S EE I+ K A + ++V +G + AA A + + K
Sbjct: 246 TFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKLKNKR 302
Query: 239 IVVV 242
I ++
Sbjct: 303 IGII 306
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-12
Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 42/245 (17%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN G L + A +G I +P + +++ + A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGIGTGG 132
+ ++T ++ +H + T E+ +DALV +G GG
Sbjct: 142 VTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVPVGGGG 188
Query: 133 TVTGAGKYLKEHNPEIKLYGVEP--VESAVLS--GGKPGPHKIQ------GIGAGFIPGV 182
+ G +K P +K+Y EP + S GK P+ G+ + G+
Sbjct: 189 MLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGL 246
Query: 183 LDV----NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA-GK 237
+L+D+ ++ +E +L+ + LL+ ++G AA + + + K
Sbjct: 247 NTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVK 306
Query: 238 LIVVV 242
I +V
Sbjct: 307 NICIV 311
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 45/247 (18%)
Query: 23 SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEE 82
SGN G+A+ A G + ++ MP S ++ A+GAE+V K + A
Sbjct: 73 SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTA--KNREEVARA 130
Query: 83 IRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIW---KGTGGKIDALVSGIG 129
++++T Y L IH ++ T G E+ G A+++ +G
Sbjct: 131 LQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVG 178
Query: 130 TGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ------GIGAGFI 179
GG + G +K +P + GVEP + L G+ + G+
Sbjct: 179 GGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-S 237
Query: 180 PGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENA 235
G + +D + + SEEA+ A+ L V +GA AA + +
Sbjct: 238 LGERTFPILRERVDGILTV-SEEALLEAERLLFTRTKQVVEPTGALPLAA--VLEHGARL 294
Query: 236 GKLIVVV 242
+ + ++
Sbjct: 295 PQTLALL 301
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 41/241 (17%)
Query: 24 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQ 78
GN G+ A+ A G I +P + L GA + G A +
Sbjct: 102 GNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV-------GELLDEAFE 154
Query: 79 KAEEIRDKTPNSYVLQQFENP------ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 132
A+ + P + F++P A + E+ + K A+ +G GG
Sbjct: 155 LAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETLWEKPGAIALSVGGGG 207
Query: 133 TVTGAGKYLKEHN-PEIKLYGVEPVESAV----LSGGK----PGPHKI-QGIGAGFIPGV 182
+ G + L+E ++ + +E + + GK P + + +G G
Sbjct: 208 LLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVK-TVGS 266
Query: 183 LDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ-IAKRPENAGK 237
+ L + IS +EA+ + E +LV + GAA AA + ++ + G
Sbjct: 267 QALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGN 326
Query: 238 L 238
L
Sbjct: 327 L 327
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-09
Identities = 51/251 (20%), Positives = 82/251 (32%), Gaps = 48/251 (19%)
Query: 24 GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQ 78
GN GI A+ A G I +P S SL+ L GAE+ LT G A
Sbjct: 63 GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVWDEANL 115
Query: 79 KAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALV-SGIGTG 131
+A+E+ + V P H + E+ ALV + G G
Sbjct: 116 RAQELAKRDGWENV--------PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGG 167
Query: 132 GTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKI-----QGIGAGFIPGV 182
L+ + + +E + ++ GK + +GA
Sbjct: 168 LLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAA 226
Query: 183 LDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA-------IQIAKR 231
+ + + EA+ + L E +LV + GAA AA +Q
Sbjct: 227 RALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGC 286
Query: 232 PENAGKLIVVV 242
+ +VV+
Sbjct: 287 LPPSLTSVVVI 297
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 45/240 (18%)
Query: 29 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG-----AVQKAEEI 83
G+AF +A G + +I MP + + + + FG E++L G A KA E+
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH-------GANFDEAKAKAIEL 145
Query: 84 RDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALVSGIGTGGTVTGA 137
+ ++V P H T E+ + +D + +G GG G
Sbjct: 146 SQQQGFTWV--------PPFDHPMVIAGQGTLALELLQQDA-HLDRVFVPVGGGGLAAGV 196
Query: 138 GKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGAGFIPGV---------LD 184
+K+ P+IK+ VE +SA L G P + +G F GV
Sbjct: 197 AVLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFR 253
Query: 185 V--NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+ LD+ + + S+ K L + S A A + G+ + +
Sbjct: 254 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 50/239 (20%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 29 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT----DPARGMKGAVQKAEEIR 84
G+A I MP + + + A G ++VL D A+ A E+
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALELS 175
Query: 85 DKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 138
+K Y+ F++P T G EI + I A+ +G GG + G
Sbjct: 176 EKDGLKYI-PPFDDP-------GVIKGQGTIGTEINRQLK-DIHAVFIPVGGGGLIAGVA 226
Query: 139 KYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGAGFIPGV-----------L 183
+ K+ P K+ GVEP +A L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 184 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
L+D V ++++ K + + ++ S A A A + + + IV +
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 80 AEEIRDKTPNSYVL-QQFENPANPKIHY---ETTGPEIWKGTGGKIDALVSGIGTGGTVT 135
E +R Y + + + + G K D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 136 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI--------GAGFIPGVLDVNL 187
G ++ GV + +I I G DV L
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 188 LDETVQ----ISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAKRPE-NAGKLIVV 241
+ + +E +E +L A EG+L + G + I++ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 242 V 242
Sbjct: 320 A 320
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 270 | |||
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 100.0 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 100.0 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 99.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.11 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.68 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.58 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.41 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.29 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.28 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.26 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.16 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.71 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.68 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.64 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.5 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.49 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.02 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.68 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.32 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.22 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.11 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.99 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.93 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.81 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.76 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.55 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.39 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.32 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.21 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.2 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.19 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.17 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.13 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.03 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.98 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.97 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 89.97 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.8 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 89.67 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.55 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.45 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.44 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.11 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.93 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 88.79 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.64 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.4 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 88.25 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 88.19 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.16 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.01 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.59 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 87.57 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.24 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 87.19 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 86.84 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 85.7 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.59 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 85.39 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 85.24 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.23 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 85.07 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 85.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 84.63 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 84.59 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 84.39 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 83.02 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 83.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 82.93 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.73 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 82.38 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 82.35 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 82.3 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 81.86 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 81.53 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 81.24 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.87 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 80.16 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 80.08 |
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-58 Score=412.38 Aligned_cols=268 Identities=74% Similarity=1.180 Sum_probs=246.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||.++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++...+++++.+.+
T Consensus 161 ~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a 240 (430)
T 4aec_A 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKA 240 (430)
T ss_dssp HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHH
Confidence 46789999999999889999999999999999999999999999999999999999999999999998655688899999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++||++||+||.+++.||.|+++||++|+++.||+||+|+|+|||++|++.++|+.+|++|||||||.+++.
T Consensus 241 ~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~ 320 (430)
T 4aec_A 241 EEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDI 320 (430)
T ss_dssp HHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCG
T ss_pred HHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcH
Confidence 99998877889999999999888999999999999997789999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.++++.++.+++|+.+..|+.++++++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+++..++++||
T Consensus 321 l~~g~~~~~~i~Gl~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~~~~g~~VV 400 (430)
T 4aec_A 321 LSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIA 400 (430)
T ss_dssp GGTCCCCCCSCTTSCCSSCCTTCCTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSGGGTTCEEE
T ss_pred hhCCCccceeehhccCCCCcHHHHHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhcCCCcCeEE
Confidence 88888888889999988778889899999999999999999999999999999999999999999998776545789999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVF 268 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~ 268 (270)
+|+||+|.||+++.+|+++.++-..|.+
T Consensus 401 ~Il~d~G~rylst~~~~~~~~~~~~~~~ 428 (430)
T 4aec_A 401 VVFPSFGERYLSTPLFQSIREEVEKMQP 428 (430)
T ss_dssp EEECBBGGGGTTSHHHHHHHHHC-----
T ss_pred EEECCCCccccchhhhhhhhhhhhcCcc
Confidence 9999999999999999999888776654
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=401.75 Aligned_cols=267 Identities=52% Similarity=0.867 Sum_probs=242.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+++|.+.||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 58 ~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a 137 (334)
T 3tbh_A 58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMA 137 (334)
T ss_dssp HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHH
Confidence 46789999999998654699999999999999999999999999999999999999999999999999754588899999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+++++.++++|++||+||.|++.||.|+++||++|+++.||+||+|+|+|||++|++.++|+.+|++|||+|||.+++.
T Consensus 138 ~~~~~~~~~~~~i~~~~np~n~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~ 217 (334)
T 3tbh_A 138 KKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPV 217 (334)
T ss_dssp HHHHHHCTTEEECCTTTCHHHHHHHHHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCT
T ss_pred HHHHHhCCCEEECCccCChhHHHHHHHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchH
Confidence 99988877899999999999888899999999999997789999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++..+.+++++.+..|+.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 218 ~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~~~~g~~Vv 297 (334)
T 3tbh_A 218 LSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIV 297 (334)
T ss_dssp TTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSGGGTTCEEE
T ss_pred hhCCCcCCeecCCCCCCcCCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhccCCcCeEE
Confidence 88777777888899888788888899999999999999999999999999999999999999999998876434789999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMV 267 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~ 267 (270)
+|+||+|+||+++.+|++...+...++
T Consensus 298 ~v~t~~g~ky~~~~~~~~~~~~~~~~~ 324 (334)
T 3tbh_A 298 TVIPSFGERYLSTTLYRSVRDEVSSLP 324 (334)
T ss_dssp EEECBBGGGGTTSGGGTHHHHC-----
T ss_pred EEECCCCccccCchhhhhhHHHhhhcc
Confidence 999999999999999998877765554
|
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=401.64 Aligned_cols=266 Identities=63% Similarity=1.079 Sum_probs=244.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|+++||.++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.++...++..+...+
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~ 152 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKA 152 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHH
Confidence 47889999999999889999999999999999999999999999999999999999999999999998654555666666
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.++..+.++.++++||+||.+++.||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+|++++|+|||.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~ 232 (344)
T 3vc3_A 153 YELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNV 232 (344)
T ss_dssp HHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCG
T ss_pred HHHHhhccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChh
Confidence 66666667889999999999888999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.++++.++.+++++.+..+...+.+.+|+++.|+|+|+++++++|++++|++++|+||+++++++++.+....++++||
T Consensus 233 l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~a~~~~~~g~~VV 312 (344)
T 3vc3_A 233 LNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV 312 (344)
T ss_dssp GGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred hcCCCCCCeeEecccccccCcccchhhceEEEEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHHhccccCCCCEEE
Confidence 98888888888898888777778889999999999999999999999999999999999999999998765446889999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESM 266 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~ 266 (270)
+|+||+|.||+++.+|++|.++.+.+
T Consensus 313 ~il~d~G~rYlst~~~~~~~~e~~~~ 338 (344)
T 3vc3_A 313 TVHPSFGERYLSSVLFQELRQEAENM 338 (344)
T ss_dssp EEECBBGGGGTTSTTTHHHHHHHHTC
T ss_pred EEECCCchhhccchhhHHHHHHhccC
Confidence 99999999999999999998876554
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=389.73 Aligned_cols=266 Identities=81% Similarity=1.276 Sum_probs=242.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||.++||++|+||||+|+|++|+++|++|+||+|+++++.|+++++.+||+|+.++...+++++.+.+
T Consensus 53 ~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a 132 (322)
T 1z7w_A 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA 132 (322)
T ss_dssp HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHH
Confidence 46789999999998778999999999999999999999999999999999999999999999999999754578889999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.++++|++||+||.++..||.|+++||++|+++.||+||+|+|+|||++|++.++|+..|.+||++|+|.+++.
T Consensus 133 ~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~ 212 (322)
T 1z7w_A 133 EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAI 212 (322)
T ss_dssp HHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCG
T ss_pred HHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence 99998876889999999999877899999999999997679999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+++.++.+++++.+..|+.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 213 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~~~~~~~vv 292 (322)
T 1z7w_A 213 LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 292 (322)
T ss_dssp GGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred ccCCCCCCcccCcCcCCCCChhhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhcCCCCCeEE
Confidence 87777666778888887778888889999999999999999999999999999999999999999988765434678999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESM 266 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~ 266 (270)
+|+||+|.||+++.+|+.|......+
T Consensus 293 ~i~tg~g~k~~~~~~~~~~~~~~~~~ 318 (322)
T 1z7w_A 293 AIFPSFGERYLSTVLFDATRKEAEAM 318 (322)
T ss_dssp EEECBBGGGGTTSGGGHHHHHHHHTC
T ss_pred EEECCCCcccccchhhhHHHHhcccc
Confidence 99999999999999999987765544
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=380.27 Aligned_cols=259 Identities=59% Similarity=0.986 Sum_probs=226.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 54 ~l~~a~~~g~~~~g~-~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 132 (313)
T 2q3b_A 54 MLQAAEQAGLIKPDT-IILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKA 132 (313)
T ss_dssp HHHHHHHTTCCCTTC-EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHH
Confidence 467889999998875 6999999999999999999999999999999999999999999999999999754578889999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+..++++||+||.++..||.|+++||++|++++||+||+|+|+|||++|++.++|+.+|++|||+|||.+++.
T Consensus 133 ~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~ 212 (313)
T 2q3b_A 133 EELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPV 212 (313)
T ss_dssp HHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCT
T ss_pred HHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCcc
Confidence 99988874447899999999866779999999999997679999999999999999999999999999999999999988
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..++...+.+++++.+..|+.+...++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 213 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~vv 292 (313)
T 2q3b_A 213 LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIV 292 (313)
T ss_dssp TTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred ccCCCCCCcccCCcCCCCCChhhhHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 76555556777888877678888888999999999999999999999999999999999999999998765433678999
Q ss_pred EEecCCCCCCcchhhcHHHH
Q 024252 241 VVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~ 260 (270)
+++|++|.||+++.+|++|.
T Consensus 293 ~v~~~~g~ky~~~~~~~~~~ 312 (313)
T 2q3b_A 293 VVLPDFGERYLSTPLFADVA 312 (313)
T ss_dssp EEECBBSGGGC---------
T ss_pred EEECCCCcccccchhhhhhh
Confidence 99999999999998998664
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-55 Score=382.55 Aligned_cols=259 Identities=56% Similarity=0.906 Sum_probs=228.8
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++|| ++||++||||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 49 ~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 127 (316)
T 1y7l_A 49 MVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKA 127 (316)
T ss_dssp HHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHH
Confidence 46788999999887 47999999999999999999999999999999999999999999999999999744578899999
Q ss_pred HHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCC
Q 024252 81 EEIRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVES 158 (270)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~ 158 (270)
++++++.++. |+++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+++ |.+|||+|||.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~ 207 (316)
T 1y7l_A 128 EEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVES 207 (316)
T ss_dssp HHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTS
T ss_pred HHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 9998887566 8899999999877789999999999997669999999999999999999999998 9999999999999
Q ss_pred ccccC---CC---CCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 159 AVLSG---GK---PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 159 ~~~~~---~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
+.+.. ++ ..++.+++++.+..|+.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++.
T Consensus 208 ~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~~~~~~ 287 (316)
T 1y7l_A 208 PVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 287 (316)
T ss_dssp CHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSG
T ss_pred ccccccccCCccCCCCcccCcCCCCCCCchhhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHHHHHhc
Confidence 76642 21 2345678888776788888889999999999999999999999999999999999999999987654
Q ss_pred CCCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 233 ENAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 233 ~~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
..++++||+|+||+|.||+++.+|++|.
T Consensus 288 ~~~~~~vv~i~tg~g~k~~~~~~~~~~~ 315 (316)
T 1y7l_A 288 EFADKLIVVILPSASERYLSTALFEGIE 315 (316)
T ss_dssp GGTTCEEEEEECBBCSSCCCTTTC----
T ss_pred CCCCCeEEEEECCCCcccCCcccccccc
Confidence 2367899999999999999999998764
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-54 Score=373.74 Aligned_cols=251 Identities=43% Similarity=0.772 Sum_probs=225.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++|| ++||++|+||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 48 ~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 126 (303)
T 2v03_A 48 MIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA 126 (303)
T ss_dssp HHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHH
T ss_pred HHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Confidence 46788899999887 47999999999999999999999999999999999999999999999999999755688898899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.+++ |++||+||.++..||.|+++||++|+++.||+||+|+|+|||++|++.++|+..|.+|||+|+|.++++
T Consensus 127 ~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~ 205 (303)
T 2v03_A 127 LEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSS 205 (303)
T ss_dssp HHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCC
T ss_pred HHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCcc
Confidence 9998885466 899999999866799999999999997679999999999999999999999999999999999999987
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+.. +++++.+..|+.+.+.++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||
T Consensus 206 ~~~-------~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~--~~~~vv 276 (303)
T 2v03_A 206 IPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN--PDAVVV 276 (303)
T ss_dssp CTT-------CCCCCGGGCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS--TTCEEE
T ss_pred ccc-------CCcCCCCCCCcccchHHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC--CCCeEE
Confidence 653 56666666677788889999999999999999999999999999999999999999987764 688999
Q ss_pred EEecCCCCCCcchhhcHHHHHh
Q 024252 241 VVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+|+||+|.||+++.+|++|...
T Consensus 277 ~i~tg~~~ky~~~~~~~~~~~~ 298 (303)
T 2v03_A 277 AIICDRGDRYLSTGVFGEEHFS 298 (303)
T ss_dssp EEECBBSGGGGGGTTTCC----
T ss_pred EEECCCCcccccchhcHHHHHh
Confidence 9999999999999899877543
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=381.11 Aligned_cols=253 Identities=37% Similarity=0.641 Sum_probs=227.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++|+. +||++|+||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 60 ~l~~a~~~g~l~~~~-~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a 138 (325)
T 3dwg_A 60 MIEQAEADGLLRPGA-TILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATA 138 (325)
T ss_dssp HHHHHHHTTCCCTTC-EEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence 467899999999875 6999999999999999999999999999999999999999999999999999765688999999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++.++++|++||+||.++..||.|+++||++|++. ||+||+|+|+|||++|++.++|+..|++|||+|||.+++.
T Consensus 139 ~~l~~~~~~~~~~~~~~np~~~~~g~~t~~~Ei~~q~~~-~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~ 217 (325)
T 3dwg_A 139 KELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLPE-ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEG 217 (325)
T ss_dssp HHHHHHCTTSBCCCTTTCHHHHHHHHHTHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGG
T ss_pred HHHHHhCCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcc
Confidence 999988766899999999998668999999999999964 9999999999999999999999999999999999999987
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCe--
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL-- 238 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~-- 238 (270)
+. .+++++.+..|+.+.++++|+++.|+|+|++++++.|++++|+++||+||++++++++++++...++++
T Consensus 218 ~~-------~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~~~~g~~~~ 290 (325)
T 3dwg_A 218 VY-------ALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERAD 290 (325)
T ss_dssp GG-------CCSSGGGCCCCTTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hh-------ccCcccCCcCcccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHhccCCCCCe
Confidence 62 345666666788888899999999999999999999999999999999999999999987654224566
Q ss_pred EEEEecCCCCCCcchhhcHHHHHh
Q 024252 239 IVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 239 vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
||+|+||+|.||+++.+|++..++
T Consensus 291 Vv~i~~g~g~ky~~~~~~~~~~~~ 314 (325)
T 3dwg_A 291 IALVVADAGWKYLSTGAYAGSLDD 314 (325)
T ss_dssp EEEEECBBGGGGGGGTTTSSCHHH
T ss_pred EEEEECCCCccccCchhhcCCcch
Confidence 999999999999999666655443
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-54 Score=380.82 Aligned_cols=259 Identities=46% Similarity=0.780 Sum_probs=234.3
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+++|. +||++||||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 65 ~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a 143 (343)
T 2pqm_A 65 IVYQAIKDGRLKPGM-EIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEV 143 (343)
T ss_dssp HHHHHHHHTSSCTTC-EEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence 467889999999874 7999999999999999999999999999999999999999999999999999754578889999
Q ss_pred HHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 81 EEIRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
++++++.+.. |+++||+||.+++.||.|++ ||++|+++.||+||+|+|+||+++|++.++|++.|++|||+|||.+++
T Consensus 144 ~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~ 222 (343)
T 2pqm_A 144 NKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESA 222 (343)
T ss_dssp HHHHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGC
T ss_pred HHHHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCc
Confidence 9998887555 67899999998778999999 999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
.+..++..++.+++++.+..|+.+.+.++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++|
T Consensus 223 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~v 302 (343)
T 2pqm_A 223 VLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTI 302 (343)
T ss_dssp TTTTCCCCCCCCTTCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred ccccCCCCCeecCccCCCCCCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHhcCCCCCeE
Confidence 88766666677888887777888888999999999999999999999999999999999999999999876542368899
Q ss_pred EEEecCCCCCCcchhhcHHHHH
Q 024252 240 VVVFPSFGERYLSSVLFESVKK 261 (270)
Q Consensus 240 v~i~t~gg~~~~~~~~~~~~~~ 261 (270)
|+|+||+|.||+++.+|++|..
T Consensus 303 v~i~tg~g~ky~~~~~~~~~~~ 324 (343)
T 2pqm_A 303 VIIVPSCGERYLSTDLYKIKDE 324 (343)
T ss_dssp EEEECBBGGGGTTSSTTTSCCC
T ss_pred EEEEcCCCccccchhhhhhHhh
Confidence 9999999999999988886643
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=370.77 Aligned_cols=255 Identities=54% Similarity=0.892 Sum_probs=229.1
Q ss_pred CHHHHHHcCCCCCCCc-EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGES-VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~-~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|+++|.++||.. +||++|+||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.++...+++++.+.
T Consensus 47 ~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~ 126 (304)
T 1ve1_A 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126 (304)
T ss_dssp HHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHH
Confidence 4678889999888731 799999999999999999999999999999999999999999999999999975448888889
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
+++++++ ++++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|++.|.+|||+|||.+++
T Consensus 127 a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~ 205 (304)
T 1ve1_A 127 ALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSN 205 (304)
T ss_dssp HHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGC
T ss_pred HHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCc
Confidence 9998887 478899999999985445899999999999767999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
.+..+++..+.+++++.+..|+.+.+.++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. .++++|
T Consensus 206 ~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~-~~~~~v 284 (304)
T 1ve1_A 206 VLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAREL-GPGKRV 284 (304)
T ss_dssp TTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred cccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHHhc-CCCCeE
Confidence 8876666667778888777788888889999999999999999999999999999999999999999987653 367899
Q ss_pred EEEecCCCCCCcchhhcH
Q 024252 240 VVVFPSFGERYLSSVLFE 257 (270)
Q Consensus 240 v~i~t~gg~~~~~~~~~~ 257 (270)
|+|+||+|.||+++.+|+
T Consensus 285 v~i~tg~g~ky~~~~~~~ 302 (304)
T 1ve1_A 285 ACISPDGGWKYLSTPLYA 302 (304)
T ss_dssp EEEECBBSGGGTTSTTTC
T ss_pred EEEECCCCccCCCcccCC
Confidence 999999999999985665
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-54 Score=374.21 Aligned_cols=254 Identities=56% Similarity=0.931 Sum_probs=200.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+++|. +||++|+||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.++...+++++.+.+
T Consensus 52 ~l~~a~~~g~~~~g~-~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a 130 (308)
T 2egu_A 52 MIEAAEKAGKLKPGD-TIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKA 130 (308)
T ss_dssp HHHHHHHTTCCCTTC-EEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Confidence 467889999998874 6999999999999999999999999999999999999999999999999999754578888899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
++++++. ++++++||+||.++..||.|+++||++|+++.||+||+|+|+|||++|++.++|+++|++|||+|||.+++.
T Consensus 131 ~~l~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~ 209 (308)
T 2egu_A 131 EELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPV 209 (308)
T ss_dssp HHHHHHH-CCBCC--------------CHHHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC---
T ss_pred HHHHHHC-cCCcCCcCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 9998887 458889999999867899999999999997679999999999999999999999999999999999999987
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..++...+.+++++.+..|+.+...++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. .++++||
T Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~-~~~~~vv 288 (308)
T 2egu_A 210 LSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKEL-GKGKKVL 288 (308)
T ss_dssp --------------------CCCCCCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred ccCCCCCCcccCccCCCCCCHhHHHHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhc-CCCCeEE
Confidence 776555566778887776677788889999999999999999999999999999999999999999987654 4688999
Q ss_pred EEecCCCCCCcchhhcH
Q 024252 241 VVFPSFGERYLSSVLFE 257 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~ 257 (270)
+|+||+|.||+++.+|+
T Consensus 289 ~i~tg~g~ky~~~~~~~ 305 (308)
T 2egu_A 289 AIIPSNGERYLSTPLYQ 305 (308)
T ss_dssp EEECBBGGGGTTSSTTC
T ss_pred EEECCCCcccccchhcc
Confidence 99999999999987774
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=366.61 Aligned_cols=248 Identities=54% Similarity=0.839 Sum_probs=225.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++++ ||++|+||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.+++..+++++.+.+
T Consensus 54 ~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a 130 (303)
T 1o58_A 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKA 130 (303)
T ss_dssp HHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCC---EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHH
Confidence 46778888987765 999999999999999999999999999999999999999999999999999744588888899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCC-eEEEEEecCCCc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~-~~vigV~~~~~~ 159 (270)
++++++. ++||++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+++|. +|||+|||.+++
T Consensus 131 ~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~ 209 (303)
T 1o58_A 131 LEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSP 209 (303)
T ss_dssp HHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSC
T ss_pred HHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCc
Confidence 9998876 68889999999987779999999999999766999999999999999999999999999 999999999998
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
.+..+++..+.+++++.+..|+.+.+.++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. .++++|
T Consensus 210 ~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~-~~~~~v 288 (303)
T 1o58_A 210 VLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL-GPDARV 288 (303)
T ss_dssp TTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS-CTTCCE
T ss_pred cccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHc-CCCCEE
Confidence 8877776677788888776777888889999999999999999999999999999999999999999987653 367899
Q ss_pred EEEecCCCCCCcch
Q 024252 240 VVVFPSFGERYLSS 253 (270)
Q Consensus 240 v~i~t~gg~~~~~~ 253 (270)
|+|+||+|.||+++
T Consensus 289 v~i~tg~g~ky~~~ 302 (303)
T 1o58_A 289 VTVAPDHAERYLSI 302 (303)
T ss_dssp EEEECBBGGGCTTT
T ss_pred EEEECCCCcccccC
Confidence 99999999999985
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=372.98 Aligned_cols=260 Identities=42% Similarity=0.662 Sum_probs=226.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH---HH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~---~~ 77 (270)
||.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.++...++++ ..
T Consensus 148 ~i~~a~~~G~l~~g~-tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~ 226 (435)
T 1jbq_A 148 MIEDAERDGTLKPGD-TIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHV 226 (435)
T ss_dssp HHHHHHHHTCSCTTC-EEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHH
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHH
Confidence 467899999999975 69999999999999999999999999999999999999999999999999986434443 45
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
+.+++++++.++.|+++||+|+.|+..||.++++||++|+++.+|+||+|+|+|||++|++.++|+..|++|||+|||.+
T Consensus 227 ~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~g 306 (435)
T 1jbq_A 227 GVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 306 (435)
T ss_dssp HHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETT
T ss_pred HHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCC
Confidence 67888888876788899999998888999999999999997679999999999999999999999999999999999999
Q ss_pred Ccccc-----CCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 158 SAVLS-----GGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 158 ~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
++.+. .+....+.+++++.+.+|..+...++|+++.|+|+|+++++++|++++||++||+||+++++++++.++.
T Consensus 307 s~~~~~~~l~~~~~~~~~~~gig~~~~~~~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa~~~~~~~ 386 (435)
T 1jbq_A 307 SILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL 386 (435)
T ss_dssp CSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGGGC
T ss_pred chhhchhhhhcCCCcceeecccccCccchhhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHHHc
Confidence 86542 1233345577887766666677788999999999999999999999999999999999999999987653
Q ss_pred CCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 233 ENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 233 ~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
.++++||+|+|++|.||++++++++|..+
T Consensus 387 -~~g~~VV~iltd~g~ky~~~~~~~~w~~~ 415 (435)
T 1jbq_A 387 -QEGQRCVVILPDSVRNYMTKFLSDRWMLQ 415 (435)
T ss_dssp -CTTCEEEEEECBBGGGGTTTTTCHHHHHH
T ss_pred -CCCCeEEEEEcCCcccccchhhccHHHHh
Confidence 36889999999999999999999888665
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=376.32 Aligned_cols=260 Identities=37% Similarity=0.605 Sum_probs=232.7
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~---~~~ 77 (270)
|+.+|+++|.++||. +||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.++...+|+ .+.
T Consensus 100 ~i~~a~~~g~~~~g~-~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~ 178 (527)
T 3pc3_A 100 MVQDAEEQGLLKPGY-TIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLI 178 (527)
T ss_dssp HHHHHHHHTCCCTTC-EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHH
T ss_pred HHHHHHHcCCCCCCC-EEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHH
Confidence 467899999999986 6999999999999999999999999999999999999999999999999998643443 367
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
+.+.+++++.++.+|++||+||.|++.||.|+++||++|+++.||+||+|+|+|||++|++.++|+..|++|||||||.+
T Consensus 179 ~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~ 258 (527)
T 3pc3_A 179 YVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYG 258 (527)
T ss_dssp HHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETT
T ss_pred HHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 78888888876788899999998889999999999999997789999999999999999999999999999999999999
Q ss_pred Ccccc-----CCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 158 SAVLS-----GGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 158 ~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
++.+. .+.+..+.+++++.+..|..+++.++|+++.|+|+|++++++.|++++||++||+||++++++++++++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaal~~~~~~ 338 (527)
T 3pc3_A 259 SILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKL 338 (527)
T ss_dssp CCCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTTC
T ss_pred cccccchhhcCCCCCceeccccCCCCCCcccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHc
Confidence 97542 2233455678898887888888899999999999999999999999999999999999999999987653
Q ss_pred CCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 233 ENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 233 ~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
.++++||+|+|++|.||++++++++|...
T Consensus 339 -~~~~~vv~i~~d~g~ryls~~~~~~~l~~ 367 (527)
T 3pc3_A 339 -KKGQRCVVILPDGIRNYMTKFVSDNWMEA 367 (527)
T ss_dssp -CTTCEEEEEECBBGGGGTTTTTSHHHHHH
T ss_pred -CCCCeEEEEEcCcchhhHhhhhcHHHHHh
Confidence 47899999999999999999888888543
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=344.26 Aligned_cols=245 Identities=22% Similarity=0.323 Sum_probs=203.7
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|+++|++++. ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.+++ +++++.+.++
T Consensus 64 i~~a~~~g~~~~~-~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~ 140 (346)
T 3l6b_A 64 VRSLVPDALERKP-KAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SDESRENVAK 140 (346)
T ss_dssp HHTTC-----CCC-SCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SHHHHHHHHH
T ss_pred HHHHHHhccccCC-CEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHH
Confidence 5566666655443 469999999999999999999999999999999999999999999999999986 5788888999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~ 161 (270)
+++++. +++|++||+||.+ +.||+|+++||++|+ +.||+||+|+|+|||++|++.++|+.+|++|||+|||.+++++
T Consensus 141 ~l~~~~-~~~~i~~~~np~~-~~g~~t~~~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~ 217 (346)
T 3l6b_A 141 RVTEET-EGIMVHPNQEPAV-IAGQGTIALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDC 217 (346)
T ss_dssp HHHHHH-TCEECCSSSCHHH-HHHHHHHHHHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHH
T ss_pred HHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHH
Confidence 998886 6889999999986 789999999999999 5799999999999999999999999999999999999998754
Q ss_pred c----CCCCC------CcccccCCCCC--CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 162 S----GGKPG------PHKIQGIGAGF--IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 162 ~----~~~~~------~~~~~gl~~~~--~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
. .+++. .+..+++.... ..+.+.++++|+++.|+|+|+++++++|++++|+++||+||++++++++..
T Consensus 218 ~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~ 297 (346)
T 3l6b_A 218 YQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQH 297 (346)
T ss_dssp HHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHSGG
T ss_pred HHHHHcCCccccCCCCCchhhhccCCCcHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHHHHHHHHhh
Confidence 2 23321 23344544221 223455778999999999999999999999999999999999999998754
Q ss_pred hcCC-CCCCeEEEEecCCCCCCcch
Q 024252 230 KRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 230 ~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
.+.. .++++||+|+| ||++|++.
T Consensus 298 ~~~~~~~~~~Vv~i~s-GG~~d~~~ 321 (346)
T 3l6b_A 298 FQTVSPEVKNICIVLS-GGNVDLTS 321 (346)
T ss_dssp GGGSCTTCCEEEEEEC-BCCCCTTG
T ss_pred hhhccCCCCeEEEEcC-CCCCCHHH
Confidence 3332 46788988885 68999987
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=334.76 Aligned_cols=252 Identities=19% Similarity=0.189 Sum_probs=210.1
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|.++| .++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.++
T Consensus 85 i~~a~~~g-----~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~ 157 (364)
T 4h27_A 85 CKRWAKQG-----CAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDEAFELAK 157 (364)
T ss_dssp HHHHHHTT-----CCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTHHHHHHH
T ss_pred HHHHHhcC-----CCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHH
Confidence 45666654 4689999999999999999999999999999999999999999999999999985 5788999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCcc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAV 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~~ 160 (270)
+++++.++++|++||+||.+ +.||.|+++||++|+++.||+||+|+|+|||++|++.++|+.+ |++++|+|||.++++
T Consensus 158 ~l~~~~~~~~~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~ 236 (364)
T 4h27_A 158 ALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHS 236 (364)
T ss_dssp HHHHHSTTEEEECSSCSHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCH
T ss_pred HHHHhCCCeEEeCCCCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChH
Confidence 99988768899999999987 7899999999999997679999999999999999999999986 789999999999987
Q ss_pred cc----CCCC-----CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH--
Q 024252 161 LS----GGKP-----GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI-- 226 (270)
Q Consensus 161 ~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~-- 226 (270)
+. .+++ ..+..++++.+..+ +.+.+++.+..+.|+|+|+++++++|++++|+++||+||+++++++
T Consensus 237 ~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~ 316 (364)
T 4h27_A 237 FHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSH 316 (364)
T ss_dssp HHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhh
Confidence 63 2332 22345566655432 2334566777889999999999999999999999999999999985
Q ss_pred ---HHhhcCCC--CCCeEEEEecCCCCCCcchhhcHHHHHhh
Q 024252 227 ---QIAKRPEN--AGKLIVVVFPSFGERYLSSVLFESVKKEA 263 (270)
Q Consensus 227 ---~~~~~~~~--~~~~vv~i~t~gg~~~~~~~~~~~~~~~~ 263 (270)
++.+++.. ++++||+|+|||.+.+++ .++.+....
T Consensus 317 k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~--~l~~~~~~~ 356 (364)
T 4h27_A 317 VIQKLQLEGNLRTPLPSLVVIVCGGSNISLA--QLRALKEQL 356 (364)
T ss_dssp HHHHHHHTTSSCSSCCEEEEEECBCSSCCHH--HHHHHHHHT
T ss_pred hhHHhhhccCcCCCCCeEEEEECCCCCCCHH--HHHHHHHHh
Confidence 55556553 268999999777665555 455555443
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-47 Score=335.77 Aligned_cols=244 Identities=19% Similarity=0.229 Sum_probs=209.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|+++| .++||++|+||||+|+|++|+++|++|+||+|++ ++..|+++++.+||+|+.+++ +++++.+.
T Consensus 68 ~l~~a~~~g-----~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~ 140 (351)
T 3aey_A 68 AVSKAVEGG-----AQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRL 140 (351)
T ss_dssp HHHHHHHTT-----CSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHH
T ss_pred HHHHHHhcC-----CCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH
Confidence 356677666 4689999999999999999999999999999998 999999999999999999996 58888888
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
+++++++. +.+|+++ +||.+ +.||.|+++||++|++..||+||+|+|+|||++|++.++|+.++ .+||++|
T Consensus 141 a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigv 217 (351)
T 3aey_A 141 TQKLTEAF-PVALVNS-VNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGF 217 (351)
T ss_dssp HHHHHHHS-SEEECST-TCHHH-HHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEE
T ss_pred HHHHHHhc-CcEecCC-CCccc-eeeeeeHHHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEE
Confidence 99998887 5788887 78877 78999999999999976799999999999999999999998754 6899999
Q ss_pred ecCCCccccCCCCC---CcccccCCCCCCc-cc----cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 154 EPVESAVLSGGKPG---PHKIQGIGAGFIP-GV----LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 154 ~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
||.+++++..+++. .+.+++++.+..+ +. +.+++.++++.|+|+|+++++++|++++|+++||+||++++++
T Consensus 218 e~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~ 297 (351)
T 3aey_A 218 QAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGV 297 (351)
T ss_dssp EEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHH
T ss_pred ecCCCChhhcCcccCCccchhHhhcCCCCCCHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHH
Confidence 99999877544432 2345677654321 11 2356788999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 226 IQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 226 ~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+++.+++. .++++||+|+||+|.||++++
T Consensus 298 ~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 327 (351)
T 3aey_A 298 FKLLREGRLEPESTVVLTLTGHGLKDPATA 327 (351)
T ss_dssp HHHHHTTCSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCCHHHH
Confidence 99887654 478899999999999998864
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=334.01 Aligned_cols=251 Identities=19% Similarity=0.193 Sum_probs=208.6
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|.++| .++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.++
T Consensus 85 l~~a~~~g-----~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~ 157 (372)
T 1p5j_A 85 CKRWAKQG-----CAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAK 157 (372)
T ss_dssp HHHHHHTT-----CCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHcC-----CCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHH
Confidence 55666654 5689999999999999999999999999999999999999999999999999986 6888999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCcc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAV 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~~ 160 (270)
+++++.++++|++||+||.+ +.||.|+++||++|++..||+||+|+|+|||++|++.++|+.+ |++|||+|||.++++
T Consensus 158 ~l~~~~~~~~~v~~~~n~~~-~~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~ 236 (372)
T 1p5j_A 158 ALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHS 236 (372)
T ss_dssp HHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCH
T ss_pred HHHHhcCCcEEeCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChH
Confidence 99888558899999999988 7899999999999997669999999999999999999999986 889999999999876
Q ss_pred cc----CCCC-----CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH-
Q 024252 161 LS----GGKP-----GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ- 227 (270)
Q Consensus 161 ~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~- 227 (270)
+. .+++ ..+..++++.+..+ +.+.+.+.++++.|+|+|+++++++|++++|+++||+||++++++++
T Consensus 237 ~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~alaa~~~~ 316 (372)
T 1p5j_A 237 FHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSH 316 (372)
T ss_dssp HHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCceecCCCceeecccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHh
Confidence 53 2322 12345666655433 22345677889999999999999999999999999999999999874
Q ss_pred ----HhhcCC--CCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 228 ----IAKRPE--NAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 228 ----~~~~~~--~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
+.+++. .++++||+|+|||++ ++...++++...
T Consensus 317 ~~~~l~~~g~~~~~~~~Vv~i~tgg~~--~~~~~~~~~~~~ 355 (372)
T 1p5j_A 317 VIQKLQLEGNLRTPLPSLVVIVCGGSN--ISLAQLRALKEQ 355 (372)
T ss_dssp HHHHHHHTTSSCSSCSCEEEECCBCSS--CCHHHHHHHHHH
T ss_pred hHHHHhhccccCCCCCeEEEEECCCCC--CCHHHHHHHHHH
Confidence 333332 367899999988765 444455655544
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=334.45 Aligned_cols=244 Identities=20% Similarity=0.227 Sum_probs=209.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|+++| .++||++|+||||+|+|++|+++|++|+||+|++ ++..|+++++.+||+|+.+++ +++++.+.
T Consensus 70 ~l~~a~~~g-----~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~ 142 (352)
T 2zsj_A 70 AISKAVEAG-----KRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALNI 142 (352)
T ss_dssp HHHHHHHTT-----CCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHHHHHHH
T ss_pred HHHHHHhcC-----CCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH
Confidence 356677666 4689999999999999999999999999999998 999999999999999999996 58888889
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
+++++++. +.+|+++ +||.+ +.||.|+++||++|++..||+||+|+|+|||++|++.++|+..+ .+||++|
T Consensus 143 a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigv 219 (352)
T 2zsj_A 143 VRKIGENF-PVEIVNS-VNPYR-IEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGW 219 (352)
T ss_dssp HHHHHHHS-SEEECST-TCTHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEE
T ss_pred HHHHHHHc-CcEECCC-CCcch-hhhHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99998887 5788887 88887 78999999999999976799999999999999999999998754 6899999
Q ss_pred ecCCCccccCCCCC---CcccccCCCCCCc-cc----cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHH
Q 024252 154 EPVESAVLSGGKPG---PHKIQGIGAGFIP-GV----LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 225 (270)
Q Consensus 154 ~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~ 225 (270)
||.+++++..+++. .+.+++++.+... +. +.+++.++++.|+|+|+++++++|++++|+++||+||++++++
T Consensus 220 e~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~ 299 (352)
T 2zsj_A 220 QAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGL 299 (352)
T ss_dssp EETTBCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHH
T ss_pred ecCCCcHHhcCCccCCCcchhHHhcCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECchHHHHHHHH
Confidence 99999877544432 2345677654311 11 2346778999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 226 IQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 226 ~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+++.+++. .++++||+|+||+|.||++++
T Consensus 300 ~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 329 (352)
T 2zsj_A 300 IKLVREGFFKGGEVVTCTLTGNGLKDPDTA 329 (352)
T ss_dssp HHHHHTTCCCSCCEEEEEECBBGGGCHHHH
T ss_pred HHHHHhCCCCCCCeEEEEeCCCCccChHHH
Confidence 99887654 468899999999999999864
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=328.15 Aligned_cols=243 Identities=22% Similarity=0.198 Sum_probs=204.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++| .++||++|+||||+|+|++|+++|++|+||+|+++++.|+++++.+||+|+.+++ +++++.+.+
T Consensus 45 ~l~~a~~~g-----~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~~~~~~a 117 (318)
T 2rkb_A 45 FCQEMAKKG-----CRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDEANLRA 117 (318)
T ss_dssp HHHHHHHTT-----CCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHH
T ss_pred HHHHHHHcC-----CCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHH
Confidence 356666654 5689999999999999999999999999999999999999999999999999985 688898899
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~ 159 (270)
++++++. +++|++||+||.+ +.||.|+++||++|++..||+||+|+|+|||++|++.++|+.+ |.+|||+|+|.+++
T Consensus 118 ~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~ 195 (318)
T 2rkb_A 118 QELAKRD-GWENVPPFDHPLI-WKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAH 195 (318)
T ss_dssp HHHHHST-TEEECCSSCSHHH-HHHHHHHHHHHHHHSSSCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBC
T ss_pred HHHHHhc-CCEEeCCCCChhh-ccchhHHHHHHHHhcCCCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCCh
Confidence 9988875 7899999999987 7899999999999997679999999999999999999999986 88999999999987
Q ss_pred ccc----CCCC-----CCcccccCCCCCCc---cccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 160 VLS----GGKP-----GPHKIQGIGAGFIP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 160 ~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
++. .+++ ..+..++++.+..+ +.+.+.+.++++.|+|+|+++++++|++++|+++||+||++++++++
T Consensus 196 ~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~a~aa~~~ 275 (318)
T 2rkb_A 196 CFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYS 275 (318)
T ss_dssp HHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhcCcEEchhHHHHHHHHHH
Confidence 653 2322 12445566655433 22335667889999999999999999999999999999999999873
Q ss_pred -----HhhcCC--CCCCeEEEEecCCCCCCcc
Q 024252 228 -----IAKRPE--NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 228 -----~~~~~~--~~~~~vv~i~t~gg~~~~~ 252 (270)
+.+++. .++++||+|+|||++.+++
T Consensus 276 ~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~ 307 (318)
T 2rkb_A 276 GLLRRLQAEGCLPPSLTSVVVIVCGGNNINSR 307 (318)
T ss_dssp SHHHHHHHTTSSCSSCSCEEEEECBCSSCCHH
T ss_pred hhHHHHhhccccCCCCCeEEEEECCCCCCCHH
Confidence 323332 3678999999888766665
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=335.33 Aligned_cols=244 Identities=20% Similarity=0.255 Sum_probs=209.4
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
||.+|+++| .++||++|+||||+|+|++|+++|++|+||+|++ ++..|+++++.+||+|+.+++ +++++.+.
T Consensus 76 ~l~~a~~~g-----~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~ 148 (360)
T 2d1f_A 76 AVTDALAHG-----QRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLEL 148 (360)
T ss_dssp HHHHHHHTT-----CSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHHHHHHH
T ss_pred HHHHHHHCC-----CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH
Confidence 356677666 4689999999999999999999999999999998 999999999999999999996 58889889
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC------CeEEEEE
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGV 153 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~------~~~vigV 153 (270)
+++++++.++.+++++ +||.+ +.||.|+++||++|++..||+||+|+|+|||++|++.++++..+ .+||++|
T Consensus 149 a~~l~~~~~~~~~i~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigv 226 (360)
T 2d1f_A 149 ARKMAADFPTISLVNS-VNPVR-IEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGT 226 (360)
T ss_dssp HHHHHHHCTTEEECST-TCHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEE
T ss_pred HHHHHHhcCCeEEcCC-CChhh-hhhHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEE
Confidence 9999888755788887 78887 68999999999999976799999999999999999999998753 6899999
Q ss_pred ecCCCccccCCCCC---CcccccCCCCCCccc------cccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHH
Q 024252 154 EPVESAVLSGGKPG---PHKIQGIGAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAA 224 (270)
Q Consensus 154 ~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa 224 (270)
||.+++++..+++. .+..++++.+. |.. +.+++.++++.|+|+|+++++++|++++|+++||+||+++++
T Consensus 227 e~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~epssa~alaa 305 (360)
T 2d1f_A 227 QAAGAAPLVLGEPVSHPETIATAIRIGS-PASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAG 305 (360)
T ss_dssp EEGGGCHHHHSSCCSSCCCSCGGGCCSS-CTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHH
T ss_pred ecCCCCHHhcCCccCCccchHHHhCCCC-CCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECchHHHHHHH
Confidence 99999877555432 23456776553 222 235677899999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 225 AIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 225 ~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++++.+++. .++++||+|+||+|.||++++
T Consensus 306 ~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 336 (360)
T 2d1f_A 306 LLKAIDDGWVARGSTVVCTVTGNGLKDPDTA 336 (360)
T ss_dssp HHHHHHHTSSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHhCCCCCCCeEEEEeCCCCcCCHHHH
Confidence 999887654 468899999999999998864
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=342.63 Aligned_cols=245 Identities=20% Similarity=0.235 Sum_probs=208.9
Q ss_pred HHHcCCCCCCC----------------cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 5 AEEKGLIRPGE----------------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 5 a~~~g~l~~g~----------------~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
|+++|.+++|. ++|+++|+||||+|+|++|+++|++|+||||++++..|+.+++.|||+|+.++
T Consensus 134 a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~ 213 (442)
T 3ss7_X 134 ALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE 213 (442)
T ss_dssp HHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEES
T ss_pred HHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 88999999886 48999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHH
Q 024252 69 PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKY 140 (270)
Q Consensus 69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~--------~~d~iv~~vG~Gg~~aGi~~~ 140 (270)
+ +++++.+.+++++++.+++|+++++ |+.+++.||+|+++||++|++. .||+||+|+|+||+++|++.+
T Consensus 214 ~--~~~~a~~~a~~~a~~~~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~ 290 (442)
T 3ss7_X 214 Q--DYGVAVEEGRKAAQSDPNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFG 290 (442)
T ss_dssp S--CHHHHHHHHHHHHHTCTTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHH
Confidence 6 6899999999998887668888885 5555689999999999999842 366999999999999999999
Q ss_pred hhhc-CCCeEEEEEecCCCcccc----CCCC-----------CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHH
Q 024252 141 LKEH-NPEIKLYGVEPVESAVLS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIE 201 (270)
Q Consensus 141 ~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~ 201 (270)
||++ +|+++||+|||.+++++. .+.+ ..+..++|+.+.. .+.+.++++|+++.|+|+|+++
T Consensus 291 lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~ 370 (442)
T 3ss7_X 291 LKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYD 370 (442)
T ss_dssp HHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHH
T ss_pred HHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHH
Confidence 9997 799999999999998653 2322 1234456655431 2334568899999999999999
Q ss_pred HHHHHHHHcCCeechhHHHHHHHHHHHhhcC------C-CC----CCeEEEEecCCCCCCcc
Q 024252 202 TAKLLALKEGLLVGISSGAATAAAIQIAKRP------E-NA----GKLIVVVFPSFGERYLS 252 (270)
Q Consensus 202 a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~------~-~~----~~~vv~i~t~gg~~~~~ 252 (270)
+++.|++++||++||+||++++++++++++. . .+ +++||+++|||++++.+
T Consensus 371 a~~~L~~~eGi~~epssaaalAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~~~ 432 (442)
T 3ss7_X 371 MLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEE 432 (442)
T ss_dssp HHHHHHHHHCCCCCGGGGGGGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCCHH
T ss_pred HHHHHHHHCCCeEcHHHHHHHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCCCCCHH
Confidence 9999999999999999999999999987631 1 11 78999999999998655
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=328.61 Aligned_cols=226 Identities=21% Similarity=0.301 Sum_probs=194.0
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++
T Consensus 65 ~~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~ 141 (311)
T 1ve5_A 65 PKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIH 141 (311)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecC
Confidence 4569999999999999999999999999999999999999999999999999986 4678888888888775 788999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-
Q 024252 95 QFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~- 166 (270)
||+||.+ +.||.|+++||++|+. +.||+||+|+|+|||++|++.++|+++|++|||+|+|.+++++. .+++
T Consensus 142 ~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~ 220 (311)
T 1ve5_A 142 PFDDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRIL 220 (311)
T ss_dssp SSSSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCC
T ss_pred CCCCcch-hhhccHHHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCcc
Confidence 9999987 6899999999999995 57999999999999999999999999999999999999987653 2332
Q ss_pred -----CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCe
Q 024252 167 -----GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKL 238 (270)
Q Consensus 167 -----~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~ 238 (270)
..+..+++..+. .++.+.++++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++ . +++
T Consensus 221 ~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~--~-~~~ 297 (311)
T 1ve5_A 221 RLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR--L-PQT 297 (311)
T ss_dssp CCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG--S-CSE
T ss_pred ccCCCCCeeeCcCCCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchHHHHHHHHHHhhhhc--c-CCE
Confidence 223345555432 23345577899999999999999999999999999999999999999998766 4 889
Q ss_pred EEEEecCCC
Q 024252 239 IVVVFPSFG 247 (270)
Q Consensus 239 vv~i~t~gg 247 (270)
||+|+|||+
T Consensus 298 vv~i~tgg~ 306 (311)
T 1ve5_A 298 LALLLSGGN 306 (311)
T ss_dssp EEEEECBCC
T ss_pred EEEEECCCC
Confidence 999997753
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=330.83 Aligned_cols=234 Identities=24% Similarity=0.331 Sum_probs=200.7
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE-EeCCCCChHHHHHHHHHHHHhC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV-LTDPARGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~-~~~~~~~~~~~~~~a~~~~~~~ 87 (270)
+.+++| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+|+.+||+|+ .++. .+++++.+.+.+++++.
T Consensus 140 ~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~~~da~~~a~~~~~~~ 217 (389)
T 1wkv_A 140 RRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PSTVHLLPRVMKDSKNE 217 (389)
T ss_dssp TTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC-SSSGGGHHHHHHHHHHH
T ss_pred HHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcc
Confidence 556677 68999999999999999999999999999999999999999999999999 7773 35788888888887775
Q ss_pred CCccccCCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccccCC
Q 024252 88 PNSYVLQQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG 164 (270)
Q Consensus 88 ~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~~ 164 (270)
+.+|++||+||.+++.||++++.||++|+. ..||+||+|+|+|||++|++.+|++..|.+|||+|||.+++.+.+-
T Consensus 218 -g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~Gi 296 (389)
T 1wkv_A 218 -GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGI 296 (389)
T ss_dssp -CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTC
T ss_pred -CcEecCcCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCccccc
Confidence 789999999998888999999999999994 3699999999999999999999999999999999999988765320
Q ss_pred CCCCcccccCCCCCCccccccccCC-cEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 165 KPGPHKIQGIGAGFIPGVLDVNLLD-ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 165 ~~~~~~~~gl~~~~~~~~~~~~~~~-~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
. .+.. .|..+....+| +++.|+|+|+++++++|++++||++||+||+++++++++.+++..+.+++|+++
T Consensus 297 ----~---~i~~--~~~~~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l~~~g~~~~~~vVvil 367 (389)
T 1wkv_A 297 ----R---RVET--GMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVV 367 (389)
T ss_dssp ----C---CGGG--CCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred ----c---ccCC--cchhhhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 1 1111 12223345667 899999999999999999999999999999999999999877544445688899
Q ss_pred cCCCCCCcchh
Q 024252 244 PSFGERYLSSV 254 (270)
Q Consensus 244 t~gg~~~~~~~ 254 (270)
||+|.||++++
T Consensus 368 tg~G~k~~~~~ 378 (389)
T 1wkv_A 368 PDTGFKYLSLV 378 (389)
T ss_dssp CBBGGGCHHHH
T ss_pred cCCCccCHHHH
Confidence 99999999863
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=338.31 Aligned_cols=230 Identities=22% Similarity=0.287 Sum_probs=201.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+++|++|+++|++|+||||.+++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++
T Consensus 79 ~~gVV~aSsGNhg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~dda~~~a~ela~e~-g~~~v~ 155 (514)
T 1tdj_A 79 AHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVP 155 (514)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECC
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeC
Confidence 3469999999999999999999999999999999999999999999999999985 6899999999998886 788999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
||+||.+ ++||+|+++||++|+++ +|+||+|+|+|||++|++.++|+++|++|||||||.+++++. .+++.
T Consensus 156 pfdnp~~-iaGqgTig~EI~eQl~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~ 233 (514)
T 1tdj_A 156 PFDHPMV-IAGQGTLALELLQQDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLP 233 (514)
T ss_dssp SSCCHHH-HHHHHHHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCS
T ss_pred CCCCHHH-HHHHHHHHHHHHHHCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecC
Confidence 9999988 79999999999999965 999999999999999999999999999999999999998764 23321
Q ss_pred --CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+..+|++...+ ++.+.++++|+++.|+|+|+.+++++|++++|+++||+||++++|++++.++...++++||+|
T Consensus 234 ~v~tiadGiav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~alAal~~~~~~~~~~g~~VV~I 313 (514)
T 1tdj_A 234 RVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313 (514)
T ss_dssp CCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CccccccchhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 233455554322 345678899999999999999999999999999999999999999998876543468999999
Q ss_pred ecCCCCC
Q 024252 243 FPSFGER 249 (270)
Q Consensus 243 ~t~gg~~ 249 (270)
+||++.+
T Consensus 314 ~tGgn~d 320 (514)
T 1tdj_A 314 LSGANVN 320 (514)
T ss_dssp CCCCCCC
T ss_pred EeCCCCC
Confidence 9876544
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=328.02 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=198.4
Q ss_pred CHHHHHHcCCCCCCCcEEEee--CCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCCh---H
Q 024252 1 MIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGM---K 74 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~---~ 74 (270)
|+.+|+++| .++||++ |+||||+|+|++|+++|++|+||||+++ +..|++.++.|||+|++++...+. .
T Consensus 61 ~i~~a~~~G-----~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~ 135 (325)
T 1j0a_A 61 LLGDALSKG-----ADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMK 135 (325)
T ss_dssp HHHHHHHTT-----CSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHH
T ss_pred HHHHHHHcC-----CCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhH
Confidence 356777777 3579997 9999999999999999999999999999 999999999999999999975432 2
Q ss_pred HHHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEE
Q 024252 75 GAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 153 (270)
Q Consensus 75 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV 153 (270)
++.+.+++++++.+..| +..++.|+.+ ..||.|++.||++|++..||+||+|+|+|||++|++.++|+.+|++|||+|
T Consensus 136 ~~~~~a~~l~~~~~~~~~~p~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigV 214 (325)
T 1j0a_A 136 YAEEIAEELKREGRKPYVIPPGGASPIG-TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGI 214 (325)
T ss_dssp HHHHHHHHHTTSSCCEEEECGGGCSHHH-HTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEcCCCCCHHH-HHHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEE
Confidence 56777888887764433 3455677776 568999999999999667999999999999999999999999999999999
Q ss_pred ecCCCccccCCCC---CCcccccCC-CCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHHHHH
Q 024252 154 EPVESAVLSGGKP---GPHKIQGIG-AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQI 228 (270)
Q Consensus 154 ~~~~~~~~~~~~~---~~~~~~gl~-~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~~~~ 228 (270)
||.+++.+..... ......+++ .+..|+.+.++++|+ +.|+|+|+++++++|++++||++|| |||+++++++++
T Consensus 215 e~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~ 293 (325)
T 1j0a_A 215 AVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDL 293 (325)
T ss_dssp ECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH
T ss_pred EecCchHHHHHHHHHHHHHHHHhcCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHH
Confidence 9999976642211 011122344 234577888899999 9999999999999999999999999 599999999999
Q ss_pred hhcCCCCCCeEEEEecCCCCC
Q 024252 229 AKRPENAGKLIVVVFPSFGER 249 (270)
Q Consensus 229 ~~~~~~~~~~vv~i~t~gg~~ 249 (270)
+++... +++||+|+|| |+.
T Consensus 294 ~~~~~~-~~~Vv~i~tG-G~~ 312 (325)
T 1j0a_A 294 ARKGEL-GEKILFIHTG-GIS 312 (325)
T ss_dssp HHTTCS-CSEEEEEECC-CHH
T ss_pred HHcCCC-CCcEEEEECC-Cch
Confidence 887654 8899999955 553
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-46 Score=325.86 Aligned_cols=230 Identities=20% Similarity=0.313 Sum_probs=197.8
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++||++|+||||+|+|++|+++|++|++|||++++..|+++++.|||+|+.+++. ++++.+.+++++++. +++|++
T Consensus 74 ~~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~l~~~~-~~~~i~ 150 (323)
T 1v71_A 74 KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISERE-GLTIIP 150 (323)
T ss_dssp HHCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTT--TTCHHHHHHHHHHHH-TCBCCC
T ss_pred CCeEEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecC
Confidence 45799999999999999999999999999999999999999999999999999963 566778888888776 678899
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC----
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP---- 166 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~---- 166 (270)
||+||.+ +.||+|+++||++|++ .+|+||+|+|+|||++|++.++|+++|++|||+|+|.+++++. .+++
T Consensus 151 ~~~n~~~-~~g~~t~~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~ 228 (323)
T 1v71_A 151 PYDHPHV-LAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHID 228 (323)
T ss_dssp SSSSHHH-HHHHTHHHHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCC
T ss_pred CCCCcch-hhhHhHHHHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecC
Confidence 9999987 6899999999999995 6999999999999999999999999999999999999987653 2322
Q ss_pred -CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 167 -GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 167 -~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
..+..++++.+.. ++.+.++++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+|
T Consensus 229 ~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~alaa~~~~~~~--~~~~~vv~i 306 (323)
T 1v71_A 229 TPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEK--LKNKRIGII 306 (323)
T ss_dssp CCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGG--GTTCEEEEE
T ss_pred CCCcccccccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhHHh--cCCCeEEEE
Confidence 1345566665432 2345568899999999999999999999999999999999999999987654 268999999
Q ss_pred ecCCCCCCcc
Q 024252 243 FPSFGERYLS 252 (270)
Q Consensus 243 ~t~gg~~~~~ 252 (270)
+|| |+.+++
T Consensus 307 ~tG-g~~~~~ 315 (323)
T 1v71_A 307 ISG-GNVDIE 315 (323)
T ss_dssp ECB-CCCCHH
T ss_pred eCC-CCCCHH
Confidence 977 554444
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=332.02 Aligned_cols=240 Identities=20% Similarity=0.245 Sum_probs=200.3
Q ss_pred Cc-EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcccc
Q 024252 15 ES-VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL 93 (270)
Q Consensus 15 ~~-~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (270)
.+ +||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|+
T Consensus 111 ~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v 187 (398)
T 4d9i_A 111 EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVV 187 (398)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEe
Confidence 45 79999999999999999999999999999999999999999999999999996 6889999999998886 78899
Q ss_pred CC-----CC-CCCchhhhhhchHHHHHHhhCCC---CCEEEEecCCchhHHHHHHHhhhc--CCCeEEEEEecCCCcccc
Q 024252 94 QQ-----FE-NPANPKIHYETTGPEIWKGTGGK---IDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAVLS 162 (270)
Q Consensus 94 ~~-----~~-~~~~~~~G~~t~~~EI~~ql~~~---~d~iv~~vG~Gg~~aGi~~~~~~~--~~~~~vigV~~~~~~~~~ 162 (270)
+| |+ |+.+.+.||.|+++||++|+++. ||+||+|+|+|||++|++.+++++ .+.++||+|||.+++++.
T Consensus 188 ~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~ 267 (398)
T 4d9i_A 188 QDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIY 267 (398)
T ss_dssp CSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHH
T ss_pred cCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHH
Confidence 86 65 34556899999999999999644 999999999999999999999876 478999999999998774
Q ss_pred ----CCCCC------CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcC----CeechhHHHHHHHH
Q 024252 163 ----GGKPG------PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEG----LLVGISSGAATAAA 225 (270)
Q Consensus 163 ----~~~~~------~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g----i~~ep~sg~alaa~ 225 (270)
.+++. .+..++++.+.. .+.+.++++|+++.|+|+|+++++++|++++| |++||+||++++++
T Consensus 268 ~s~~~g~~~~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~ 347 (398)
T 4d9i_A 268 RSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVL 347 (398)
T ss_dssp HHHHHTSCCCC------CCTTCCCSSCCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHH
T ss_pred HHHHcCCceecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHH
Confidence 34332 223345543321 13344688999999999999999999999999 99999999999999
Q ss_pred HHHh---------hcCC-CCCCeEEEEecCCCCCCcchhhcHHHH
Q 024252 226 IQIA---------KRPE-NAGKLIVVVFPSFGERYLSSVLFESVK 260 (270)
Q Consensus 226 ~~~~---------~~~~-~~~~~vv~i~t~gg~~~~~~~~~~~~~ 260 (270)
++++ +++. .++++||+|+| ||+++++ .|.+++
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~Vv~i~t-GG~~d~~--~~~~~~ 389 (398)
T 4d9i_A 348 AAVHYHPQRQSLMEKLALNKDAVVLVIST-EGDTDVK--HYREVV 389 (398)
T ss_dssp HHHHHSTTHHHHHHHTTCCTTCEEEEEEC-BCCSSHH--HHHHHH
T ss_pred HHhhhhhhhHHHHHhcCCCCCCEEEEEeC-CCCCCHH--HHHHHH
Confidence 9884 3443 47899999997 5898777 454444
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=326.97 Aligned_cols=231 Identities=21% Similarity=0.276 Sum_probs=202.3
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
++||++||||||+|+|++|+++|++|+||+|++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++|
T Consensus 109 ~~vv~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~~~~~~-~~~~i~~ 185 (366)
T 3iau_A 109 KGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TFDEAQTHALELSEKD-GLKYIPP 185 (366)
T ss_dssp HCEEEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHHH-TCEECCS
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CHHHHHHHHHHHHHhc-CCEecCC
Confidence 469999999999999999999999999999999999999999999999999984 6899999999998886 7899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ +.||+|++.||++|+ +.||+||+|+|+|||++|++.++|.++|++|+++|+|.+++++. .+++
T Consensus 186 ~~n~~~-i~g~~t~~~Ei~~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~ 263 (366)
T 3iau_A 186 FDDPGV-IKGQGTIGTEINRQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSN 263 (366)
T ss_dssp SSSHHH-HHHHHHHHHHHHHHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESC
T ss_pred CCChHH-HHHHHHHHHHHHHhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCC
Confidence 999987 799999999999999 67999999999999999999999999999999999999998664 2332
Q ss_pred CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
..+..++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||+||+++++++++++++..++++||+|+
T Consensus 264 ~~tia~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~alaa~~~~~~~~~~~g~~Vv~i~ 343 (366)
T 3iau_A 264 VDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAIA 343 (366)
T ss_dssp CCCSSGGGCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred ccchhhhhcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 1233455554332 3456678899999999999999999999999999999999999999999877665689999999
Q ss_pred cCCCCCCcc
Q 024252 244 PSFGERYLS 252 (270)
Q Consensus 244 t~gg~~~~~ 252 (270)
||| +.+++
T Consensus 344 tGg-n~d~~ 351 (366)
T 3iau_A 344 SGA-NMDFS 351 (366)
T ss_dssp CBC-CCCGG
T ss_pred CCC-CCCHH
Confidence 765 54454
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=327.01 Aligned_cols=245 Identities=18% Similarity=0.186 Sum_probs=202.0
Q ss_pred CHHHHHHcCCCCCCCcEEEe--eCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-----H------HHHHHHHHcCCEEEEe
Q 024252 1 MIADAEEKGLIRPGESVLIE--PTSGNTGIGLAFMAAAKGYRLIITMPASMS-----L------ERRMVLLAFGAELVLT 67 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~--aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-----~------~k~~~~~~~Ga~v~~~ 67 (270)
||.+|+++| .++||+ +|+||||+|+|++|+++|++|+||||++++ . .|+++++.|||+|+++
T Consensus 58 ~l~~a~~~g-----~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~ 132 (341)
T 1f2d_A 58 IVPDIVEGD-----YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVI 132 (341)
T ss_dssp THHHHHHSC-----CSEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHcC-----CCEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEe
Confidence 577788776 357999 999999999999999999999999999887 3 4999999999999999
Q ss_pred CCCCCh---HHHHHHHHHHHHhCCCcc-ccCC-CCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHH
Q 024252 68 DPARGM---KGAVQKAEEIRDKTPNSY-VLQQ-FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGK 139 (270)
Q Consensus 68 ~~~~~~---~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~ 139 (270)
+...+. +.+.+.+++++++.+..| +.++ |+||.+ +.||.|++.||++|++ ..||+||+|+|+|||++|++.
T Consensus 133 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~ 211 (341)
T 1f2d_A 133 EDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILA 211 (341)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHHHhcCCcEEEeCCCcCCCCcc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHH
Confidence 974332 256777888887764344 4578 999998 6789999999999995 479999999999999999999
Q ss_pred HhhhcCCCeEEEEEecCCCccccCCCC---CCcccccCCCC--CCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCee
Q 024252 140 YLKEHNPEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAG--FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLV 214 (270)
Q Consensus 140 ~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ 214 (270)
+|++.+|++|||+|||.+++.+..... ..+.+++++.+ ..++.+.++++|+++.|+|+|+++++++|++++||++
T Consensus 212 ~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ 291 (341)
T 1f2d_A 212 GMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLT 291 (341)
T ss_dssp HHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999976642211 11223455432 2345677889999999999999999999999999999
Q ss_pred ch-hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 215 GI-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 215 ep-~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
|| |||+++++++++++++. .++++||+|+|+ |+.++.
T Consensus 292 ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~tG-G~~~~~ 330 (341)
T 1f2d_A 292 DPVYEGKSMQGLIALIKEDYFKPGANVLYVHLG-GAPALS 330 (341)
T ss_dssp CTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECC-CGGGGG
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCCeEEEEECC-chHHhh
Confidence 99 59999999999988764 478899999955 564444
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=322.96 Aligned_cols=243 Identities=20% Similarity=0.228 Sum_probs=198.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeC--CcHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aS--sGN~g~alA~aa~~~G~~~~iv~p~~~~~--------~k~~~~~~~Ga~v~~~~~~ 70 (270)
||.+|+++| .++||++| +||||+|+|++|+++|++|+||||++++. .|++.++.|||+|++++..
T Consensus 72 ~l~~a~~~G-----~~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~ 146 (342)
T 4d9b_A 72 LVADALREG-----ADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDAL 146 (342)
T ss_dssp HHHHHHHTT-----CCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCC
T ss_pred HHHHHHHcC-----CCEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECch
Confidence 356677776 46799996 79999999999999999999999998773 5999999999999999976
Q ss_pred CChHHHH-HHHHHHHHhCCCccccCCC--CCCCchhhhhhchHHHHHHhhC--CCCCEEEEecCCchhHHHHHHHhhhcC
Q 024252 71 RGMKGAV-QKAEEIRDKTPNSYVLQQF--ENPANPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHN 145 (270)
Q Consensus 71 ~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~~~~G~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~~~~~~~~ 145 (270)
.+++++. +.++++.++. +..|+.++ .|+.+ ..||.|++.||++|++ ..||+||+|+|+|||++|++.++|+.+
T Consensus 147 ~~~~~~~~~~a~~l~~~~-~~~~~~p~~~~n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~ 224 (342)
T 4d9b_A 147 TDPDAQLQTLATRIEAQG-FRPYVIPVGGSSALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLM 224 (342)
T ss_dssp SSHHHHHHHHHHHHHHTT-CCEEECCGGGCSHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhcC-CceEEeCCCCCChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhC
Confidence 5555555 3556666665 33444444 45544 5699999999999996 479999999999999999999999999
Q ss_pred CCeEEEEEecCCCccccCCCC---CCcccccCCC-CCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechh-HHH
Q 024252 146 PEIKLYGVEPVESAVLSGGKP---GPHKIQGIGA-GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGA 220 (270)
Q Consensus 146 ~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~-~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~-sg~ 220 (270)
|++|||+|||.+++.+..... ..+..++++. +..++.+.++++|+++.|+|+|+++++++|++++||++||+ ||+
T Consensus 225 ~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~ 304 (342)
T 4d9b_A 225 PDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGK 304 (342)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHH
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccccHHHH
Confidence 999999999999976542211 1233456665 45677888999999999999999999999999999999997 999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEEecCCCCCCc
Q 024252 221 ATAAAIQIAKRPE-NAGKLIVVVFPSFGERYL 251 (270)
Q Consensus 221 alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~ 251 (270)
++++++++++++. .++++||+|+|| |+.++
T Consensus 305 a~aa~~~~~~~~~~~~~~~Vv~i~tG-Gn~~~ 335 (342)
T 4d9b_A 305 AMAGLIDGISQKRFNDDGPILFIHTG-GAPAL 335 (342)
T ss_dssp HHHHHHHHHHHTCSSSSSCEEEEECC-CTTHH
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECC-Cccch
Confidence 9999999987755 478899999955 67443
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=316.92 Aligned_cols=245 Identities=18% Similarity=0.224 Sum_probs=195.8
Q ss_pred CHHHHHHcCCCCCCCcEEEe--eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH--------HHHHHHHcCCEEEEeCCC
Q 024252 1 MIADAEEKGLIRPGESVLIE--PTSGNTGIGLAFMAAAKGYRLIITMPASMSLE--------RRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~--aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~--------k~~~~~~~Ga~v~~~~~~ 70 (270)
||.+|+++| .++||+ +|+||||+|+|++|+++|++|+||||++++.. |+++++.|||+|+.+++.
T Consensus 58 ~l~~a~~~g-----~~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~ 132 (338)
T 1tzj_A 58 LIPEALAQG-----CDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132 (338)
T ss_dssp THHHHHHTT-----CCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-
T ss_pred HHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc
Confidence 567777766 357998 79999999999999999999999999988764 999999999999999864
Q ss_pred CChH---HHHHHHHHHHHhCCCcccc-CC-CCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhh
Q 024252 71 RGMK---GAVQKAEEIRDKTPNSYVL-QQ-FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLK 142 (270)
Q Consensus 71 ~~~~---~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~ 142 (270)
.+.. .+.+.+++++++.+..|++ ++ |+||.+ +.||.|+++||++|++ ..||+||+|+|+|||++|++.++|
T Consensus 133 ~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k 211 (338)
T 1tzj_A 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFA 211 (338)
T ss_dssp ------CHHHHHHHHHHHTTCCEEECCGGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcCCceEEeCCCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHH
Confidence 2211 2466777787776444543 45 899998 6799999999999995 479999999999999999999999
Q ss_pred hc-CCCeEEEEEecCCCccccCCCC---CCcccccCCCCC----CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCee
Q 024252 143 EH-NPEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAGF----IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLV 214 (270)
Q Consensus 143 ~~-~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~----~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ 214 (270)
++ .|+ |||+|+|.+++.+..... ..+..++++.+. ..+.+.++++++++.|+|+|+++++++|++++||++
T Consensus 212 ~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ 290 (338)
T 1tzj_A 212 ADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLT 290 (338)
T ss_dssp TTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCC
T ss_pred hhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCcc
Confidence 98 788 999999999976542211 112223333221 233466788999999999999999999999999999
Q ss_pred chh-HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 215 GIS-SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 215 ep~-sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
||+ ||+++++++++.+++. .++++||+|+| ||++|++.
T Consensus 291 ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~t-GG~~~~~~ 330 (338)
T 1tzj_A 291 DPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHL-GGVPALNG 330 (338)
T ss_dssp CTTTHHHHHHHHHHHHHTTCSCTTCEEEEEEC-CCGGGGGG
T ss_pred ccchHHHHHHHHHHHHHcCCCCCCCeEEEEEC-CCcccccc
Confidence 995 9999999999987764 37889999985 68888775
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=316.40 Aligned_cols=235 Identities=20% Similarity=0.218 Sum_probs=192.4
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCcc
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY 91 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (270)
+|.++|+++||||||+|+|++|+++|++|+||+|++ ++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|
T Consensus 182 ~g~~~Vv~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g--~~dd~~~~a~~l~~~~-~~~ 258 (486)
T 1e5x_A 182 RPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-PIY 258 (486)
T ss_dssp CCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-CEE
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CEE
Confidence 345689999999999999999999999999999996 999999999999999999996 5889999999998886 678
Q ss_pred ccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEEecCCCcccc--
Q 024252 92 VLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS-- 162 (270)
Q Consensus 92 ~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV~~~~~~~~~-- 162 (270)
+++++ |+.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|+++. |.+|+|+|++.+++++.
T Consensus 259 ~vns~-N~~~-i~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~ 336 (486)
T 1e5x_A 259 LANSL-NSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLH 336 (486)
T ss_dssp EGGGS-HHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHH
T ss_pred EeCCC-CHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHH
Confidence 88887 7877 78999999999999964 59999999999999999999998864 78999999999887653
Q ss_pred --CCC----C---CCcccccCCCCCCccccc--cccCCc----EEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 163 --GGK----P---GPHKIQGIGAGFIPGVLD--VNLLDE----TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 163 --~~~----~---~~~~~~gl~~~~~~~~~~--~~~~~~----~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
.++ + ..+..++++.+. |.++. .+++++ ++.|+|+|++++++ +++++|+++||+||++++++++
T Consensus 337 ~~~G~~~~~~~~~~~t~a~gi~i~~-p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePssA~alaa~~~ 414 (486)
T 1e5x_A 337 YKSGWKDFKPMTASTTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFK 414 (486)
T ss_dssp HHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHcCCCccccCCCCCeeCccccCCC-CccHHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEEChhHHHHHHHHHH
Confidence 232 1 234456665442 32222 223444 99999999999999 7788999999999999999999
Q ss_pred HhhcCC-CCCCeEEEEecCCCCCCcchh
Q 024252 228 IAKRPE-NAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 228 ~~~~~~-~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+.+++. .++++||+++|+++.||.+.+
T Consensus 415 ~~~~g~~~~~~~vV~i~Tg~~~k~~~~v 442 (486)
T 1e5x_A 415 LRNQGVIAPTDRTVVVSTAHGLKFTQSK 442 (486)
T ss_dssp HHHTTSSCTTCCEEEEECBCGGGGHHHH
T ss_pred HHHhcCCCCCCeEEEEeCCCCccCHHHH
Confidence 987754 467899999999999999864
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=304.63 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=181.4
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~---~~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+++.|||+|+.++. ..+++++.+.+.+ +.++.++.+
T Consensus 128 vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~ 207 (418)
T 1x1q_A 128 VIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTF 207 (418)
T ss_dssp EEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEE
T ss_pred EEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcE
Confidence 455699999999999999999999999999852 23678899999999999984 3468888877755 455544444
Q ss_pred c-cCCCCCCC----chhhhhhchHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHhhhc-CCCeEEEEEecCCCcc-
Q 024252 92 V-LQQFENPA----NPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV- 160 (270)
Q Consensus 92 ~-~~~~~~~~----~~~~G~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~- 160 (270)
| ++++.|+. +...||+|+++||++|+. ..||+||+|+|+||+++|++.+||++ .|++|||+|||.+++.
T Consensus 208 ~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~ 287 (418)
T 1x1q_A 208 YILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLS 287 (418)
T ss_dssp ECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSS
T ss_pred EEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccc
Confidence 4 45554433 212599999999999983 35999999999999999999999987 7999999999999732
Q ss_pred -------ccCCCCC--------------------CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHc
Q 024252 161 -------LSGGKPG--------------------PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKE 210 (270)
Q Consensus 161 -------~~~~~~~--------------------~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~ 210 (270)
+..+.+. .+..+++..+.. .+.+.+..+++++.|+|+|+++++++|++++
T Consensus 288 ~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~e 367 (418)
T 1x1q_A 288 TGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLE 367 (418)
T ss_dssp SCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhc
Confidence 2122211 122234432211 1234456678999999999999999999999
Q ss_pred CCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 211 GLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 211 gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
||+++|++|+++++++++.++. .++++||+++||+|+||++.+
T Consensus 368 gi~~~~~sa~a~a~a~~~~~~~-~~~~~Vv~vlsG~g~kd~~~~ 410 (418)
T 1x1q_A 368 GIIPALESAHAIAYAAKVVPEM-DKDQVVVINLSGRGDKDVTEV 410 (418)
T ss_dssp SCCBCHHHHHHHHHHHHHTTTS-CTTCEEEEEECBBGGGTHHHH
T ss_pred CCcccchHHHHHHHHHHHHHhc-CCCCeEEEEECCCCCCCHHHH
Confidence 9999999999999999886543 368999999999999998853
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=295.97 Aligned_cols=245 Identities=23% Similarity=0.287 Sum_probs=188.5
Q ss_pred HHHHHHcCCCCCCCcEEE-eeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CC--HHHHHHHHHcCCEEEEeCC-CCChHHH
Q 024252 2 IADAEEKGLIRPGESVLI-EPTSGNTGIGLAFMAAAKGYRLIITMPAS-MS--LERRMVLLAFGAELVLTDP-ARGMKGA 76 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv-~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~--~~k~~~~~~~Ga~v~~~~~-~~~~~~~ 76 (270)
+..|+++| .+++| ++||||||+|+|++|+++|++|+||||+. .+ ..|+++++.+||+|+.++. ..+++++
T Consensus 90 i~~a~~~g-----~~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a 164 (388)
T 1v8z_A 90 ALLAKFMG-----KTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDA 164 (388)
T ss_dssp HHHHHHTT-----CCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHH
T ss_pred HHHHHHcC-----CCEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHH
Confidence 34555555 23455 58999999999999999999999999974 22 4678999999999999985 3467888
Q ss_pred HHHHHH-HHHhCCCc-cccCCCCCCCc----hhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 77 VQKAEE-IRDKTPNS-YVLQQFENPAN----PKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 77 ~~~a~~-~~~~~~~~-~~~~~~~~~~~----~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
.+.+.+ +.++.++. |+++++.|+.+ +..||+|+++||++|+ +..||+||+|+|+|||++|++.+++. .|
T Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~-~~ 243 (388)
T 1v8z_A 165 INEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DK 243 (388)
T ss_dssp HHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CT
T ss_pred HHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhh-CC
Confidence 777754 56665454 44566655432 2348999999999999 44599999999999999999999984 88
Q ss_pred CeEEEEEecCCCcc--------ccCCCC--------------------CCcccccCCCCC---CccccccccCCcEEEcC
Q 024252 147 EIKLYGVEPVESAV--------LSGGKP--------------------GPHKIQGIGAGF---IPGVLDVNLLDETVQIS 195 (270)
Q Consensus 147 ~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~ 195 (270)
.+|||+|||.++.. +..+++ ..+..+++.... ..+.+...++++++.|+
T Consensus 244 ~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~ 323 (388)
T 1v8z_A 244 KVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVT 323 (388)
T ss_dssp TSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEEccCccccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEEC
Confidence 99999999998642 111211 112223443211 11234456779999999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
|+|+++++++|++++|++++|++|++++++.++.++. .++++||+|+||+|+||++.
T Consensus 324 d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~-~~~~~vv~i~tg~g~k~~~~ 380 (388)
T 1v8z_A 324 DEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDI 380 (388)
T ss_dssp HHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHH
T ss_pred HHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccCHHH
Confidence 9999999999999999999999999999999987653 46889999999999999885
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=300.95 Aligned_cols=247 Identities=22% Similarity=0.280 Sum_probs=188.8
Q ss_pred HHHHHHcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCC-CCChHHH
Q 024252 2 IADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDP-ARGMKGA 76 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~--~k~~~~~~~Ga~v~~~~~-~~~~~~~ 76 (270)
+..|.++| .++||+ +|+||||+|+|++|+++|++|+||||+. .+. .|+.+|+.+||+|+.++. ..+++++
T Consensus 94 ~~~a~~~g-----~~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a 168 (396)
T 1qop_B 94 ALLAKRMG-----KSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168 (396)
T ss_dssp HHHHHHTT-----CCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHH
T ss_pred HHHHHHcC-----cCEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHH
Confidence 33455555 335666 8999999999999999999999999985 333 457899999999999984 4468888
Q ss_pred HHHHHHH-HHhCCCcc-ccCCCCCCC----chhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCC
Q 024252 77 VQKAEEI-RDKTPNSY-VLQQFENPA----NPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNP 146 (270)
Q Consensus 77 ~~~a~~~-~~~~~~~~-~~~~~~~~~----~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~ 146 (270)
.+.+.+. .++.++.+ +++++.|+. ++..||+|++.||++|+ +..||+||+|+|+||+++|++.+++ ..|
T Consensus 169 ~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~ 247 (396)
T 1qop_B 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDT 247 (396)
T ss_dssp HHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCT
T ss_pred HHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCC
Confidence 8777764 55544544 445544432 22348999999999999 4569999999999999999999998 488
Q ss_pred CeEEEEEecCCCcc--------ccCCCC--------------------CCcccccCCCCC---CccccccccCCcEEEcC
Q 024252 147 EIKLYGVEPVESAV--------LSGGKP--------------------GPHKIQGIGAGF---IPGVLDVNLLDETVQIS 195 (270)
Q Consensus 147 ~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~ 195 (270)
.+|||+|||.++.. +..+++ ..+..+++..+. ..+.+.+.++++++.|+
T Consensus 248 ~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~ 327 (396)
T 1qop_B 248 SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSIT 327 (396)
T ss_dssp TSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEE
T ss_pred CCEEEEEeCCCccccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEEC
Confidence 99999999998642 212221 112233443211 12335567789999999
Q ss_pred HHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 196 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 196 ~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|+|+++++++|++++||+++|++|++++++.++.++...++++||+++||+|+||++.+
T Consensus 328 d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~~vv~i~tg~g~k~~~~~ 386 (396)
T 1qop_B 328 DDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386 (396)
T ss_dssp HHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHH
Confidence 99999999999999999999999999999998876532267899999999999998853
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=294.24 Aligned_cols=236 Identities=23% Similarity=0.300 Sum_probs=172.3
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCcc
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSY 91 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~ 91 (270)
.|+++|+||||+|+|++|+++|++|+||||+... ..|+.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+
T Consensus 132 vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~ 211 (422)
T 2o2e_A 132 VIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTY 211 (422)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcE
Confidence 4567999999999999999999999999998532 4678899999999999985 3468888877755 455544544
Q ss_pred c-cCCCCCC--C--chhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc---
Q 024252 92 V-LQQFENP--A--NPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159 (270)
Q Consensus 92 ~-~~~~~~~--~--~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~--- 159 (270)
| ++++.++ . ++..||++++.||.+|+ +..||+||+|+|+||+++|++.+++. .|.+|||+|||.++.
T Consensus 212 yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~~~~~ 290 (422)
T 2o2e_A 212 YCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGDGVET 290 (422)
T ss_dssp ECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC-----
T ss_pred EEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCCcccc
Confidence 4 4554432 2 22348999999999998 34599999999999999999888864 788999999999872
Q ss_pred -----cccCCCCC--------------------CcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcC
Q 024252 160 -----VLSGGKPG--------------------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEG 211 (270)
Q Consensus 160 -----~~~~~~~~--------------------~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~g 211 (270)
++..+++. .+..+++..+. ..+.+....+++++.|+|+|+++++++|++++|
T Consensus 291 ~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eG 370 (422)
T 2o2e_A 291 GRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEG 370 (422)
T ss_dssp --------------------------------------------------------CCEEEEECHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcC
Confidence 22223221 11122332211 123345567799999999999999999999999
Q ss_pred CeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 212 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 212 i~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
|++++++|+++++++++.++. .++++||+++||+|+||++.+
T Consensus 371 i~~~~esa~A~a~a~~l~~~~-~~~~~vvvilsG~g~kd~~~~ 412 (422)
T 2o2e_A 371 IIPAIESAHAVAGALKLGVEL-GRGAVIVVNLSGRGDKDVETA 412 (422)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH-CTTCEEEEECCSCSSSHHHHH
T ss_pred CccCchHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCCCCHHHH
Confidence 999999999999999887653 367899999999999998853
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=285.90 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=184.9
Q ss_pred CcEEEeeCCcHHHHHHH-HHHHHcCCcEEEEeCC-CCCHHHHHHHHHcCCEE--EEeCCCCChHHHHHHHHHHHHh----
Q 024252 15 ESVLIEPTSGNTGIGLA-FMAAAKGYRLIITMPA-SMSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDK---- 86 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA-~aa~~~G~~~~iv~p~-~~~~~k~~~~~~~Ga~v--~~~~~~~~~~~~~~~a~~~~~~---- 86 (270)
..+|+++||||||+|+| ++|+++|++|+||+|+ .+++.|+++|+.+||+| +.+++ +++++.+.++++.++
T Consensus 126 ~~~Iv~atsGNtG~A~A~~~a~~~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g--~~d~~~~~~~~~~~d~~~~ 203 (428)
T 1vb3_A 126 PVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG--DFDACQALVKQAFDDEELK 203 (428)
T ss_dssp CEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES--CHHHHHHHHHHGGGCHHHH
T ss_pred CCEEEecCCchHHHHHHHHHhhhcCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCC--CHHHHHHHHHHHHhchhhh
Confidence 56899999999999999 5999999999999999 59999999999999999 56654 688888888777642
Q ss_pred -CCCccccCCCCCCCchhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCccc-
Q 024252 87 -TPNSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL- 161 (270)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~- 161 (270)
..++++++++ ||.+ +.||.++++||++|+.+ .||+||+|+|+||+++|++.+++...|.+|+|+|++.+. .+
T Consensus 204 ~~~~~~~~n~~-n~~~-~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~-~l~ 280 (428)
T 1vb3_A 204 VALGLNSANSI-NISR-LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND-TVP 280 (428)
T ss_dssp HHHTEECCSTT-SHHH-HHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC-HHH
T ss_pred hhcCeeeCCCC-CHHH-HHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCCh-HHH
Confidence 1255666664 5665 78999999999999964 599999999999999999999998778889999998763 33
Q ss_pred ---cCCCCC-----CcccccCCCCCCccccc------ccc-----CCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHH
Q 024252 162 ---SGGKPG-----PHKIQGIGAGFIPGVLD------VNL-----LDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 222 (270)
Q Consensus 162 ---~~~~~~-----~~~~~gl~~~~~~~~~~------~~~-----~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~al 222 (270)
..+... .+..+++..+ .|.++. .+. .++++.|+|+|++++++++ +++|+++||+||+++
T Consensus 281 ~~~~~G~~~~~~~~~tis~g~~i~-~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~sa~a~ 358 (428)
T 1vb3_A 281 RFLHDGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSEPHAAVAY 358 (428)
T ss_dssp HHHHHSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCCHHHHHHH
T ss_pred HHHHcCCcccCCCCCcccchhcCC-CCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEECchHHHHH
Confidence 233321 2233444332 233322 222 6789999999999999999 999999999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 223 AAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 223 aa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
++++++.+ ++++||+++|++|.||.+++
T Consensus 359 aa~~~~~~----~~~~vV~i~tg~~~K~~~~v 386 (428)
T 1vb3_A 359 RALRDQLN----PGEYGLFLGTAHPAKFKESV 386 (428)
T ss_dssp HHHHTTCC----TTCEEEEEECBCGGGGHHHH
T ss_pred HHHHHHhC----CCCcEEEEeCCCCCCCHHHH
Confidence 99987643 57899999999999998864
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=257.08 Aligned_cols=237 Identities=15% Similarity=0.111 Sum_probs=177.0
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHH--HHcCCcEEEEeCCC-CCHHHHHHHH---HcCCEEEEeCCCCChHHHHHHHHHHH
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMA--AAKGYRLIITMPAS-MSLERRMVLL---AFGAELVLTDPARGMKGAVQKAEEIR 84 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa--~~~G~~~~iv~p~~-~~~~k~~~~~---~~Ga~v~~~~~~~~~~~~~~~a~~~~ 84 (270)
++++ .+|+++||||||.| |++| ++.|++++||+|++ +++.++.+|. .+|++++.+++ +|+++.+.+.++.
T Consensus 150 ~~~~-~~Iv~ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g--~fdda~~~vk~l~ 225 (514)
T 1kl7_A 150 EKKQ-ITVVGATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTG--TFDNCQDIVKAIF 225 (514)
T ss_dssp SCCC-EEEEEECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESS--CHHHHHHHHHHHH
T ss_pred cCCC-CEEEECCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCC--CHHHHHHHHHHHH
Confidence 5564 57999999999999 6666 89999999999997 8987777773 34556666664 7899999999998
Q ss_pred HhCC-----CccccCCCCCCCchhhhhhchHHHHHHhh-C---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEec
Q 024252 85 DKTP-----NSYVLQQFENPANPKIHYETTGPEIWKGT-G---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 155 (270)
Q Consensus 85 ~~~~-----~~~~~~~~~~~~~~~~G~~t~~~EI~~ql-~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~ 155 (270)
++.+ +.++.++. |+.. +.||.+.++|+++|+ + +.||+||+|+|+||++.|.+...+.-.|.+|+|+|++
T Consensus 226 ~~~~~~~~~~~~~~Ns~-N~~r-i~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~ 303 (514)
T 1kl7_A 226 GDKEFNSKHNVGAVNSI-NWAR-ILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATN 303 (514)
T ss_dssp HCSSCC--CCBCCCCSC-CHHH-HHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred hcccccccceeEeeCCC-CHhH-HhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeC
Confidence 7642 22333332 3433 579999999999998 4 3589999999999999999875554467789999999
Q ss_pred CCCcccc----CCCCCC--cccccCCCC---CCcccccc---ccCC----------------------------------
Q 024252 156 VESAVLS----GGKPGP--HKIQGIGAG---FIPGVLDV---NLLD---------------------------------- 189 (270)
Q Consensus 156 ~~~~~~~----~~~~~~--~~~~gl~~~---~~~~~~~~---~~~~---------------------------------- 189 (270)
++ +++. .|...+ ....+++.+ ..|.++.+ ...+
T Consensus 304 ~n-~~l~~~~~~G~~~~~~~~~~Tis~amdi~~psn~er~l~~l~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~ 382 (514)
T 1kl7_A 304 EN-DILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSI 382 (514)
T ss_dssp SC-CHHHHHHHHSEEECCSSCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHH
T ss_pred Cc-chHHHHHhcCCccCCCCCCCeechhhhcCCCCcHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCeeccHHH
Confidence 99 4443 232111 112233221 13444332 1122
Q ss_pred --------cEEEcCHHHHHHHHHHHHHHc----CCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 190 --------ETVQISSEEAIETAKLLALKE----GLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 190 --------~~~~V~~~e~~~a~~~l~~~~----gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+.+.|+|+|++++++++++++ |+++||+||+++++++++.+++..+++++|++.|++|.||.+.+
T Consensus 383 ~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~~~g~~~~~~vV~l~Ta~~~Kf~~~v 459 (514)
T 1kl7_A 383 IEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADAV 459 (514)
T ss_dssp HHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHHH
T ss_pred HHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHHHhccCCCCcEEEEECCchhhhHHHH
Confidence 488999999999999999999 99999999999999999876532357789999999999988753
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=253.10 Aligned_cols=227 Identities=13% Similarity=0.122 Sum_probs=175.9
Q ss_pred cEEEeeCCcHHHH-HHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcC-CEE--EEeCCCCChHHHHHHHHHHHHhCC--
Q 024252 16 SVLIEPTSGNTGI-GLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFG-AEL--VLTDPARGMKGAVQKAEEIRDKTP-- 88 (270)
Q Consensus 16 ~~vv~aSsGN~g~-alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~G-a~v--~~~~~~~~~~~~~~~a~~~~~~~~-- 88 (270)
.+|+++||||||. ++|++|++.|++++||+|++ +++.|+.+|+.+| ++| +.+++ +|+++.+.++++.++.+
T Consensus 139 ~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g--~fdda~~~~k~~~~d~~~~ 216 (468)
T 4f4f_A 139 ATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEG--NFDDCQNLVKGMFNDLEFC 216 (468)
T ss_dssp EEEEEECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEES--CHHHHHHHHHHHHHCHHHH
T ss_pred cEEEEECCchHHHHHHHHHHhccCCcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCC--CHHHHHHHHHHHHhccccc
Confidence 4799999999995 55777899999999999998 9999999999997 465 55664 68999998888876531
Q ss_pred ---CccccCCCCCCCchhhhhhchHHHHHHhhCCCCCE---EEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc
Q 024252 89 ---NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA---LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 162 (270)
Q Consensus 89 ---~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~---iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~ 162 (270)
+++++++ .||.. +.||+|+++||++|++ .+|. |+||+|+||+++|++.+.+.-.|..|+|+| +.+++++.
T Consensus 217 ~~~~~~~vns-in~~r-i~GQ~T~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~ 292 (468)
T 4f4f_A 217 DALSLSGVNS-INWAR-IMPQVVYYFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILS 292 (468)
T ss_dssp HHHTEEECCT-TSHHH-HGGGHHHHHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHH
T ss_pred cccceEeCCC-CCHHH-HHhHHHHHHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHH
Confidence 3455665 46665 7899999999999995 6898 999999999999999885444477799999 77777653
Q ss_pred ----CCCC-----CCcccccCCCCCCcccccc---cc-------------------------------CC--cEEEcCHH
Q 024252 163 ----GGKP-----GPHKIQGIGAGFIPGVLDV---NL-------------------------------LD--ETVQISSE 197 (270)
Q Consensus 163 ----~~~~-----~~~~~~gl~~~~~~~~~~~---~~-------------------------------~~--~~~~V~~~ 197 (270)
.|+. ..+..+++.... |.++.+ .. .+ ..+.|+|+
T Consensus 293 ~~l~~G~~~~~~~~~Tia~smdi~~-~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ 371 (468)
T 4f4f_A 293 RTLESGAYEMRGVAQTTSPSMDIQI-SSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVD 371 (468)
T ss_dssp HHHHHSEEECCCCCCCSCGGGCCSS-CTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHH
T ss_pred HHHHcCCceecCCcceeCchhhcCc-cchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHH
Confidence 2322 122333443321 222111 00 01 27899999
Q ss_pred HHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 198 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 198 e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
|+.++++++++++|+++||+||+++++++++. .+++++|++.|++|.|+.+.
T Consensus 372 ei~~ai~~l~~~~g~~vEP~~Ava~aa~~~~~----~~~~~~V~l~Ta~~~Kf~~~ 423 (468)
T 4f4f_A 372 ETAATIESVLSKDGYLLDPHSAIGVKVAREKA----SGTAPMVVLATAHPAKFPDA 423 (468)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHC----CSSSCEEEEECBCGGGSHHH
T ss_pred HHHHHHHHHHHHCCEEECHhHHHHHHHHHHHh----CCCCeEEEEecCCccccHHH
Confidence 99999999999999999999999999998863 25678999999999998765
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=244.40 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=174.0
Q ss_pred cEEEeeCCcHHHHHHHHHHH-HcCCcEEEEeCCC-CCHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC---
Q 024252 16 SVLIEPTSGNTGIGLAFMAA-AKGYRLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT--- 87 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~-~~G~~~~iv~p~~-~~~~k~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~--- 87 (270)
.+|+++||||||.|.|++++ +.|++++||+|++ +++.|+.+|+.+|+ +++.+++ +++++.+.++++.++.
T Consensus 152 ~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~~vk~~~~d~~~~ 229 (487)
T 3v7n_A 152 LNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQDIVKAVSNDHAFK 229 (487)
T ss_dssp EEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHHHHHHHHTCHHHH
T ss_pred cEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHHHHHHhhhchHHH
Confidence 36999999999999777776 8999999999997 99999999999998 6777775 6899988888876531
Q ss_pred --CCccccCCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc
Q 024252 88 --PNSYVLQQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS 162 (270)
Q Consensus 88 --~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~ 162 (270)
-+.++++++ ||.. +.|+++.++|+..|+. +.+|+|++|+|+||+++|++.+.+.-.|.+|+|+|++++ +++.
T Consensus 230 ~~~~l~~vns~-Np~r-i~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n-~~l~ 306 (487)
T 3v7n_A 230 AQQKIGTVNSI-NWAR-VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEN-DVLD 306 (487)
T ss_dssp HHTTEECCSTT-CHHH-HHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTC-HHHH
T ss_pred hhcCeeeeCCC-CHHH-HHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCC-cHHH
Confidence 155667765 5665 7899999999888884 359999999999999999988766545778999999998 4442
Q ss_pred ----CCCCC-----Ccc---cccCCCCCCcccccc---cc-----------------------------------CCcEE
Q 024252 163 ----GGKPG-----PHK---IQGIGAGFIPGVLDV---NL-----------------------------------LDETV 192 (270)
Q Consensus 163 ----~~~~~-----~~~---~~gl~~~~~~~~~~~---~~-----------------------------------~~~~~ 192 (270)
.|+.. .+. .+++..+ .|.++.+ .+ ....+
T Consensus 307 ~~~~~G~~~~~~~~~Ti~t~s~smdI~-~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~ 385 (487)
T 3v7n_A 307 EFFRTGAYRVRSAQDTYHTSSPSMDIS-KASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSG 385 (487)
T ss_dssp HHHHHSEEEC-------------------CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEE
T ss_pred HHHHcCCcccCCCCCccccCCchhccC-CCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEE
Confidence 23221 112 2233222 1322110 00 11357
Q ss_pred EcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 193 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 193 ~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
.|+|+|+.++++++++++|+++||+||++++++.++.+ ++.++|++.|++|.|+.+.+
T Consensus 386 ~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~----~~~~~V~l~Ta~p~Kf~~~v 443 (487)
T 3v7n_A 386 RSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLR----PGVPMVVLETAQPIKFGESI 443 (487)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCC----TTSCEEEEECBCGGGGHHHH
T ss_pred EECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhC----CCCcEEEEecCCccccHHHH
Confidence 89999999999999999999999999999999987532 46789999999999988753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.43 Score=35.26 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=66.0
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
+++....|..|..+|...+..|.+++++-. ++.+.+.++..|..++.-+..+ .
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~--~---------------------- 61 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAAN--E---------------------- 61 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTS--H----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCC--H----------------------
Confidence 478888899999999999999999888844 4677777777888776555321 1
Q ss_pred CCCCchhhhhhchHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEe
Q 024252 97 ENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 154 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~ 154 (270)
+++++.+ ...|.++++++.-....-+...++.++|..++++-.
T Consensus 62 ---------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 62 ---------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ---------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ---------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1111111 236888888887655444566677778888877653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.34 Score=41.47 Aligned_cols=59 Identities=25% Similarity=0.315 Sum_probs=46.3
Q ss_pred HH-HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHcCCEEEE
Q 024252 5 AE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVL 66 (270)
Q Consensus 5 a~-~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~-~~~Ga~v~~ 66 (270)
++ +.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.+ +.+|++.++
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~~ 200 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGAI 200 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEEE
Confidence 44 7788999988777777899999999999999997666543 45777777 788885443
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.33 Score=41.43 Aligned_cols=58 Identities=29% Similarity=0.333 Sum_probs=45.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+.+.+++|.+.+|...+|.-|++++..++..|.+++++.+ ++.|++.++.+|++.++.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~ 191 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETID 191 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4578899987666666899999999999999997666543 467888888899865543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.39 Score=41.21 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.++++..+++|.+.+|. .+|.-|.+.+..|+.+|.+++++.+ ++.|++.++.+|++.++-
T Consensus 157 ~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~ 216 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVIS-GIGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVN 216 (340)
T ss_dssp HHHHTTTCCTTSEEEEE-CCSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEE
T ss_pred HHHHHcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 46778889999876664 5688999999999999997655533 567888899999876543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.38 Score=41.64 Aligned_cols=57 Identities=25% Similarity=0.202 Sum_probs=45.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.+ ++.|++.++.+|++.++
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~ 217 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGI 217 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 6688999988777768899999999999999998665543 46788888888886554
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.43 Score=41.45 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=45.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+.+.+++|.+.+|.. +|.-|.+.+..|+.+|.+++++.+ ++.|++.++.+|++.++-
T Consensus 183 ~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 239 (363)
T 3uog_A 183 EKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS---SREKLDRAFALGADHGIN 239 (363)
T ss_dssp TTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec---CchhHHHHHHcCCCEEEc
Confidence 578899998766665 899999999999999997666543 567888889999965543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.65 Score=40.79 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
++.+..+++|.+.+| ..+|.-|...+..|+.+|.+.++.+. .++.|++.++.+|+++
T Consensus 177 al~~~~~~~g~~VlV-~GaG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~ 233 (398)
T 1kol_A 177 GAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEI 233 (398)
T ss_dssp HHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEE
T ss_pred HHHHcCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcE
Confidence 456778899987555 45799999999999999985444432 3568889999999984
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.63 Score=39.76 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=45.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.+ ++.|++.++.+|++.++..
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINA 200 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeC
Confidence 3468899987666666899999999999999997666544 4678888889998755433
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.66 Score=39.89 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=44.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+++.+++|.+.+|...+|.-|++++..|+..|.+++++ .++.|++.++.+|++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 67889999876666668999999999999999976555 2467888899999987
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.5 Score=40.17 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=46.7
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.+++++.+++|.+.+|...+|.-|.+.+..|+.+|.+++++. +..+++.++.+|++.++-
T Consensus 143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~ 202 (321)
T 3tqh_A 143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCIN 202 (321)
T ss_dssp HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEe
Confidence 356788999998755555689999999999999999766553 346688889999975443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.64 E-value=0.53 Score=40.61 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=45.7
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++++..+++|.+.+|. .+|.-|.+.+..|+.+|. +++++ +.++.|++.++.+|++.++
T Consensus 157 ~al~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~vi 216 (352)
T 3fpc_A 157 HGAELANIKLGDTVCVI-GIGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDII 216 (352)
T ss_dssp HHHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceEE
Confidence 35678889999876665 579999999999999998 45554 2456788899999986543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.42 Score=41.16 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=44.7
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|.+++..|+..|.+++++... ..|++.++.+|++.++
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~v~ 209 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR---TAATEFVKSVGADIVL 209 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEe
Confidence 67889999887777777999999999999999977666543 3566777778886554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.89 Score=38.93 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=49.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.+.....+++|.+. +...+|.-|...+..|+.+|...++++.. ++.|++.++.+||+..+...
T Consensus 151 ~~~~~~~~~~g~~V-lV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNV-IIIGAGTIGLLAIQCAVALGAKSVTAIDI--SSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEE-EEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEE-EEECCCCcchHHHHHHHHcCCcEEEEEec--hHHHHHHHHHcCCeEEEeCC
Confidence 35667788898764 44566889999999999999988777643 57889999999997766554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.69 Score=40.29 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=45.4
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+++...+++|.+.+|. .+|.-|.+.+..|+.+|..-++.+. .++.|++..+.+|++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAIL-GGGVIGLLTVQLARLAGATTVILST--RQATKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEEC
Confidence 5677789999875555 4599999999999999995444443 3567888889999975543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=1.3 Score=37.76 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=42.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. +..+++.++.+|++.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~ 193 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDA 193 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSE
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcE
Confidence 5678889988777777899999999999999987665533 356667677777753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=1.1 Score=38.54 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=43.8
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.+ ++.+++.++.+|++...
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 212 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGF 212 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 5678899987677666899999999999999987665543 45677777888886443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.77 Score=39.34 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=44.3
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.+...+++|.+.+|...+|.-|.+++..|+..|.+++++.+.. .+++.++.+|++.++.
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~~ 195 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVID 195 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEEE
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEEe
Confidence 4678899998877777777999999999999999776665432 4566677788865543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=1.3 Score=38.43 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=43.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|.+++..|+..|.+++++.+ ++.|++.++.+|++.++
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~ 213 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPI 213 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEE
Confidence 4578889887666666899999999999999997555543 36778888888886544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1.1 Score=38.43 Aligned_cols=60 Identities=23% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++++..+++|.+.+|+..+|.-|++++..++.. |.+++++.+ ++.+++.++.+|++.+.
T Consensus 161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 221 (347)
T 1jvb_A 161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVI 221 (347)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEe
Confidence 3556678889988777777779999999999998 987555433 35677777778876443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.91 Score=38.92 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=43.6
Q ss_pred HHHc-CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEK-GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~-g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++.+ +.+++|.+.+|...+|.-|++++..++..|.+++++.+ ++.+++.++.+|++.+
T Consensus 157 al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~ 215 (343)
T 2eih_A 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADET 215 (343)
T ss_dssp HHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEE
Confidence 4444 57888888777777799999999999999987665543 3567777777887543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.81 E-value=1.9 Score=37.10 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=43.4
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.+ ++.+++.++.+|++..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~ 219 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEV 219 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEE
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEE
Confidence 3678899988777777899999999999999987665543 3567777788887543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.76 E-value=1.5 Score=34.18 Aligned_cols=54 Identities=35% Similarity=0.524 Sum_probs=39.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 63 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~ 63 (270)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+.+.++.+|++
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~ 85 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVE 85 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCS
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCC
Confidence 3467888887666666899999999999999987655543 35566666666764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.92 Score=39.47 Aligned_cols=53 Identities=26% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 12 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 12 ~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++|.+.+|...+|.-|.+.+..|+.+|.+++.+. ++.|++.++.+|++.++..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~~ 215 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFDY 215 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEEC
Confidence 7887766666779999999999999999766553 3567888999999755433
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=1.6 Score=37.05 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=43.2
Q ss_pred HHH-cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~-~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++. .+.+++|.+.+|+..+|.-|.+++..++..|.+++++.+ ++.+++.++.+|++..
T Consensus 131 al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T 1qor_A 131 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQV 189 (327)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 443 678889887777777899999999999999987665543 3567777777787543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.32 E-value=1.3 Score=38.00 Aligned_cols=58 Identities=28% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+++...+++|.+.+|.. +|.-|.+++..|+.+|.+++++ . .++.|++.++.+|++.++
T Consensus 160 al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~-~--~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 160 ACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCT-A--RSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEE-E--SCHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE-c--CCHHHHHHHHHhCCCEEE
Confidence 45667788998766655 6999999999999999984333 2 356788888999987443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.21 E-value=1.5 Score=38.02 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=42.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
++..+++|.+.+|.. +|.-|.+.+..|+.+|...++.+. .++.|++.++.+|++.++.
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 241 (371)
T 1f8f_A 184 NALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVIN 241 (371)
T ss_dssp TTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEec
Confidence 577889998755554 699999999999999985333332 2467888888899865443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=1.7 Score=37.42 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=42.2
Q ss_pred HcCCCCCC--CcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-cCCEE
Q 024252 7 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAEL 64 (270)
Q Consensus 7 ~~g~l~~g--~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~-~Ga~v 64 (270)
+.+.+++| .+.+|+..+|.-|++++..++..|. +++++.. +..+++.++. +|++.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~ 210 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDA 210 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCce
Confidence 67888998 8777777779999999999999998 6665543 3566777765 88753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=1.7 Score=37.25 Aligned_cols=56 Identities=36% Similarity=0.400 Sum_probs=42.0
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++++..+ +|.+.+|... |.-|.+++..|+.+|. +++++.+ ++.|++.++.+|++.+
T Consensus 160 ~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~ 216 (348)
T 2d8a_A 160 TVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYV 216 (348)
T ss_dssp HHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEE
T ss_pred HHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEE
Confidence 4566777 8887666655 9999999999999998 6665533 4677888888888543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.17 E-value=0.92 Score=39.20 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHc-CCCCCC-CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEE
Q 024252 5 AEEK-GLIRPG-ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~-g~l~~g-~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~ 66 (270)
++.+ +.+++| .+.+|...+|.-|...+..|+.+|.+.+++...... ..+.+.++.+|++.++
T Consensus 157 ~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (364)
T 1gu7_A 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221 (364)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred HHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence 3444 678898 765565566999999999999999987777654333 2345666889986543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.13 E-value=1.8 Score=37.12 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.++.+..+++|.+.+|+..+|.-|++++..++..|.+++++.+. ..+++.++.+|++..
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~ 218 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVF 218 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceE
Confidence 35566678899887788788999999999999999876665443 244566677887543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.39 Score=40.76 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++++..+++|.+.+|... |.-|.+....|+.+|.+++++. ++.|++.++.+|++.++
T Consensus 133 ~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 133 QAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 3557788999987555555 9999999999999999766664 33567778889997665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.5 Score=37.26 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=41.1
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. +..+++.++.+|++..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~ 194 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHT 194 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 678888887666666799999999999999987665543 3566777777787543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.97 E-value=0.87 Score=40.85 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=46.8
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
..+++|.+.+|...+|.-|.+.+..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 67899987666666799999999999999998777763 5788999999999766544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.97 E-value=1.6 Score=38.38 Aligned_cols=56 Identities=30% Similarity=0.421 Sum_probs=42.1
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+.+++|.+.+|. .+|.-|.+.+..|+.+|..-++.+. .++.|++.++.+|++.++-
T Consensus 209 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi~ 264 (404)
T 3ip1_A 209 GGIRPGDNVVIL-GGGPIGLAAVAILKHAGASKVILSE--PSEVRRNLAKELGADHVID 264 (404)
T ss_dssp CCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEEC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEEc
Confidence 478899875555 5699999999999999994444433 3568888999999875543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.64 Score=39.99 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++.+..+++|.+.+|. .+|.-|.+.+..|+.+|.+++++.+ ++.|++.++.+|++.++
T Consensus 167 ~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVA-GFGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEE-SCSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence 35667789999876565 5699999999999999997665543 33567778889997666
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.67 E-value=1.8 Score=37.33 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHc--CCCCCCCcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEK--GLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~--g~l~~g~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++.+ ..+++|.+.+|.. .|.-|...+..|+.+ |.+++++.+ ++.|++.++.+||+.++
T Consensus 175 ~al~~~~~~~~~g~~VlV~G-aG~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi 236 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVV 236 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHHHhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEE
Confidence 34555 7889987655544 589999999999999 987555433 46788888999986544
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.55 E-value=1.2 Score=38.90 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=44.6
Q ss_pred HHHcCC-CCCCCcEEEeeCCcHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGL-IRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~-l~~g~~~vv~aSsGN~g~alA~aa~~~G-~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++++.. +++|.+.+|.. +|.-|.+++..|+.+| .+++++.+ ++.|++.++.+|++.++
T Consensus 186 al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi 245 (380)
T 1vj0_A 186 AFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTL 245 (380)
T ss_dssp HHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 456667 88998766666 8999999999999999 46666543 46788888999986544
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.45 E-value=0.85 Score=40.74 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=46.1
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
...+++|.+.+|...+|.-|.+++..|+..|.+++++.. +..|++.++.+|++.++
T Consensus 215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~---~~~~~~~~~~lGa~~~i 270 (447)
T 4a0s_A 215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS---SAQKEAAVRALGCDLVI 270 (447)
T ss_dssp TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCCEE
T ss_pred ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 478899987777777799999999999999998777653 67888899999997544
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.44 E-value=1.4 Score=38.00 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=46.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~ 66 (270)
+.+.+++|.+.+|...+|.-|......|+.+|.+.++++..... ..+++.++.+|++-++
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 45788999876666667999999999999999988877765433 4567788899997544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.11 E-value=2.1 Score=37.44 Aligned_cols=57 Identities=26% Similarity=0.231 Sum_probs=43.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
.++++..+++|.+.+|. .+|.-|...+..|+.+|. +++++.+ ++.|++.++.+|+++
T Consensus 176 ~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~ 233 (398)
T 2dph_A 176 HGCVSAGVKPGSHVYIA-GAGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFET 233 (398)
T ss_dssp HHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcE
Confidence 35567889999875555 469999999999999998 5554433 467888899999974
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=1.9 Score=36.84 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAEL 64 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~-~~Ga~v 64 (270)
+...+++|.+.+|+..+|.-|++++..++..|.+++++.+ +..+++.++ .+|++.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~ 204 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDD 204 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCce
Confidence 5577888887777777799999999999999986555433 456777776 678753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=88.79 E-value=2 Score=36.64 Aligned_cols=56 Identities=27% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
++.+..+++|.+.+|... |.-|.+++..++.+|.+++++. .++.+++.++.+|++.
T Consensus 156 ~l~~~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~ 211 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADL 211 (339)
T ss_dssp HHHHHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSE
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHCCCCE
Confidence 444446788876555555 6799999999999998655543 2467777788888854
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.64 E-value=2.9 Score=35.76 Aligned_cols=57 Identities=30% Similarity=0.288 Sum_probs=43.2
Q ss_pred HcCCCC------CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIR------PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~------~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+...++ +|.+.+|...+|.-|.+.+..|+.+|.+++++. .++.|++.++.+|++.++
T Consensus 138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi 200 (346)
T 3fbg_A 138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTA---SRNETIEWTKKMGADIVL 200 (346)
T ss_dssp TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEC---CSHHHHHHHHHHTCSEEE
T ss_pred HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCcEEE
Confidence 456676 787766776889999999999999998655553 346788888888886443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=2 Score=36.62 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+++...++||.+.+| ..+|.-|...+..++++ |.+++++. .++.|++..+.+|++..+-..
T Consensus 155 ~l~~~~~~~g~~VlV-~GaG~~g~~a~~~a~~~~g~~Vi~~~---~~~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 155 AIKVSGVKPGDWQVI-FGAGGLGNLAIQYAKNVFGAKVIAVD---INQDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTSCCEEEEEE---SCHHHHHHHHHTTCSEEEEC-
T ss_pred eecccCCCCCCEEEE-EcCCCccHHHHHHHHHhCCCEEEEEE---CcHHHhhhhhhcCCeEEEeCC
Confidence 556667889876555 45566666666666654 66655553 346788888999997665543
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.25 E-value=2.1 Score=36.42 Aligned_cols=63 Identities=24% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 68 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~----~~Ga~v~~~~ 68 (270)
+..|.+++|.+..+..=.+|.++|++.+++++|++++++.|+.- ++.-+..++ ..|+.+..+.
T Consensus 138 e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 206 (307)
T 3tpf_A 138 EWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY 206 (307)
T ss_dssp HTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 34577776766444444589999999999999999999999853 333333333 6798888776
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=6.1 Score=34.94 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=40.5
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|+....|..|+.+|-..+..|++++++ +.++.+++.++..|..++.-+.
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~~vvvI---d~d~~~v~~~~~~g~~vi~GDa 55 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGVKMVVL---DHDPDHIETLRKFGMKVFYGDA 55 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEE---ECCHHHHHHHHHTTCCCEESCT
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHhCCCeEEEcCC
Confidence 4788889999999999999999998887 3456778888888877666554
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.16 E-value=1.8 Score=37.68 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+...+++|.+.+|. .+|.-|.+.+..|+.+|. +++++ . .++.|++.++.+|++.++
T Consensus 186 ~~~~~~~~g~~VlV~-GaG~vG~~a~q~a~~~Ga~~Vi~~-~--~~~~~~~~a~~lGa~~vi 243 (378)
T 3uko_A 186 WNTAKVEPGSNVAIF-GLGTVGLAVAEGAKTAGASRIIGI-D--IDSKKYETAKKFGVNEFV 243 (378)
T ss_dssp HTTTCCCTTCCEEEE-CCSHHHHHHHHHHHHHTCSCEEEE-C--SCTTHHHHHHTTTCCEEE
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE-c--CCHHHHHHHHHcCCcEEE
Confidence 467889999875555 559999999999999999 45544 2 234678888999996543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.13 E-value=1.9 Score=37.37 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=43.3
Q ss_pred cCC----CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 8 KGL----IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 8 ~g~----l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.+. +++|.+.+|...+|.-|.+++..|+..|.+++++. ++.|++.++.+|++.++-.
T Consensus 174 ~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~~ 234 (375)
T 2vn8_A 174 VGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVIDY 234 (375)
T ss_dssp TTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred hcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEEC
Confidence 466 88888766666689999999999999998765543 2356777889999765543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=1.3 Score=38.25 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHcCCCCCC------CcEEEeeCCcHHHHHH-HHHH-HHcCCc-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPG------ESVLIEPTSGNTGIGL-AFMA-AAKGYR-LIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g------~~~vv~aSsGN~g~al-A~aa-~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++++..+++| .+.+|... |.-|... +..| +.+|.+ ++++.+......|++.++.+|++.+
T Consensus 158 al~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v 226 (357)
T 2b5w_A 158 ALEHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV 226 (357)
T ss_dssp HHHHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred HHHhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence 4455567777 76555554 9999999 9999 999997 6666554322337778889999765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=1.8 Score=37.46 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=42.4
Q ss_pred cCCCC--C-------CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 8 KGLIR--P-------GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 8 ~g~l~--~-------g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+..++ + |.+.+|... |.-|.+++..++..|.+++++.+......|++.++.+|++.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v 231 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY 231 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence 56777 7 877666666 999999999999999976666544223366777888898765
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.57 E-value=1.2 Score=38.80 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.0
Q ss_pred CCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 12 RPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 12 ~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++|.+.+|. +.+|.-|.+.+..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~ 223 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCNA 223 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEET
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEeC
Confidence 566665665 37899999999999999998666643 5688888999998755433
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.24 E-value=1.5 Score=37.80 Aligned_cols=57 Identities=30% Similarity=0.400 Sum_probs=42.8
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~-~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
++++..+++|.+.+|. .+|.-|.+.+..|+.+|. +++++. .++.|++.++.+|++.+
T Consensus 163 al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~v 220 (356)
T 1pl8_A 163 ACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQVVVTD---LSATRLSKAKEIGADLV 220 (356)
T ss_dssp HHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEE---SCHHHHHHHHHTTCSEE
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC---CCHHHHHHHHHhCCCEE
Confidence 4566778898875555 469999999999999998 444443 24678888899998643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=87.19 E-value=3.2 Score=35.45 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHcC--CCCCCCcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKG--LIRPGESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g--~l~~g~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
++.+. .+++|.+.+|. .+|.-|.+.+..|+.+ |.+++++. .++.|++.++.+|++.++.
T Consensus 161 ~l~~~~~~~~~g~~vlv~-GaG~vG~~a~qla~~~g~~~Vi~~~---~~~~~~~~~~~lGa~~~i~ 222 (345)
T 3jv7_A 161 AISRVLPLLGPGSTAVVI-GVGGLGHVGIQILRAVSAARVIAVD---LDDDRLALAREVGADAAVK 222 (345)
T ss_dssp HHHTTGGGCCTTCEEEEE-CCSHHHHHHHHHHHHHCCCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred HHHHhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHcCCCEEEc
Confidence 44443 78888765555 5599999999999988 55555542 3568889999999976543
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=86.84 E-value=3.9 Score=32.13 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=43.3
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHHHcCCEEEEeCC
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM-------PA--SMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~-------p~--~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++|.+.| ++ ..||.+|+|.++..++-.. -|++.++|. |. ..++...+.++..|.+|+....
T Consensus 37 era~e~~-Ik---~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH 106 (201)
T 1vp8_A 37 ERAKELG-IK---HLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSH 106 (201)
T ss_dssp HHHHHHT-CC---EEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHcC-CC---EEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEec
Confidence 4555555 22 3455556699987766633 688988887 32 4578899999999999998764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=85.70 E-value=1.4 Score=36.90 Aligned_cols=54 Identities=33% Similarity=0.498 Sum_probs=40.5
Q ss_pred cCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 8 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 8 ~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
.+ +++|.+.+|...+|.-|++++..++..|.+++++.+. +.|++.++.+|++.+
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~~ 174 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEA 174 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEE
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhcCCCEE
Confidence 56 8898876776677999999999999999876665442 355666677887543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.59 E-value=1.1 Score=38.07 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=42.7
Q ss_pred HHcCCCCCCC-cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+++..+++|. +.+|...+|.-|.+++..|+.+|.+++++.+. +.|++.++.+|++.++
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~---~~~~~~~~~lGa~~~i 199 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVL 199 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEE
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCcEEE
Confidence 4556788875 65666667999999999999999986666554 3456677789986543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=2.6 Score=36.51 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+...+++|.+.+|. .+|.-|...+..|+.+|..-++.+. .++.|++.++.+|++.+
T Consensus 185 ~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~v 240 (373)
T 1p0f_A 185 NTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVG--THKDKFPKAIELGATEC 240 (373)
T ss_dssp TTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHTTCSEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEE
Confidence 56788999875555 5799999999999999984333332 23467778888998643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=3 Score=36.15 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+.+++|.+.+|. .+|.-|...+..|+.+|.. ++++.+ ++.|++.++.+|++.+
T Consensus 189 ~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~v 244 (376)
T 1e3i_A 189 NTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRIIAIDI---NGEKFPKAKALGATDC 244 (376)
T ss_dssp TTSCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCcEE
Confidence 56788899875555 4699999999999999984 444422 3467777888998643
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.23 E-value=1.1 Score=38.59 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=35.2
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
...+|...+|.-|.+.+..|+.+|.+++++.+ ++.|++.++.+|++.++..
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNE 216 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEET
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEEC
Confidence 34455568888888888888888887665543 3356677778888655433
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=85.07 E-value=1.8 Score=37.37 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.++.+..+++|.+.+|... |.-|..++..|+.+|.+++++.+. +.|++.++.+|++.++
T Consensus 170 ~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~---~~~~~~~~~lGa~~v~ 228 (360)
T 1piw_A 170 SPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRS---SRKREDAMKMGADHYI 228 (360)
T ss_dssp HHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESS---STTHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHcCCCEEE
Confidence 3556678889876555555 999999999999999985555433 2456667778886543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=85.05 E-value=3.1 Score=36.00 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+.+.+++|.+.+|.. +|.-|..++..|+.+|..-++.+. .++.|++.++.+|++.+
T Consensus 185 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~v 240 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVD--INKDKFAKAKEVGATEC 240 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCceE
Confidence 567888988766654 799999999999999984333332 23466777788898543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.63 E-value=3.6 Score=35.56 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+...+++|.+.+|.. +|.-|...+..|+.+|..-++.+. .++.|++.++.+|++.+
T Consensus 186 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~v 241 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVD--LNPDKFEKAKVFGATDF 241 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCCEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHhCCceE
Confidence 567888988756654 699999999999999984333332 23467777888998643
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=1.1 Score=38.07 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHcCCCCCCC-cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 6 EEKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 6 ~~~g~l~~g~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+++..+++|. +.+|...+|.-|..++..|+..|.+++++.+. +.|++.++.+|++.+
T Consensus 142 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~---~~~~~~~~~lGa~~v 199 (330)
T 1tt7_A 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEV 199 (330)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEE
T ss_pred HHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCcEE
Confidence 4556788875 66666667999999999999999986666554 245667778898654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=5.6 Score=32.71 Aligned_cols=74 Identities=5% Similarity=-0.070 Sum_probs=51.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 87 (270)
|+..|||-.++--|+++|....+.|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++.
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999888877665666677777777766655431 23344444444444443
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=83.02 E-value=5.2 Score=33.91 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=45.8
Q ss_pred HHcCCCCCCCcEEEeeCC---cHHHHHHHHHHHHc-CCcEEEEeCCC--CCHHHHHHHHHcCCEEEEeC
Q 024252 6 EEKGLIRPGESVLIEPTS---GNTGIGLAFMAAAK-GYRLIITMPAS--MSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSs---GN~g~alA~aa~~~-G~~~~iv~p~~--~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+..|.++ |.+ |+-... +|.++|++.+++++ |++++++.|+. .++.-+..++..|+++..+.
T Consensus 144 e~~g~l~-glk-va~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T 4ekn_B 144 REIGRID-GIK-IAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKE 210 (306)
T ss_dssp HHHSCST-TCE-EEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred HHhCCcC-CCE-EEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEc
Confidence 3457665 444 554444 68999999999999 99999999984 35555666788899987765
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=83.00 E-value=6.8 Score=33.36 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=43.2
Q ss_pred HcCCCCCCCcEEEeeC-CcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPT-SGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~----~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-.. .+|.++|++.+++++|++++++.|+.- +..-+..++ ..|+++..+.
T Consensus 149 ~~g~l~-gl~-va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 215 (315)
T 1pvv_A 149 KKGTIK-GVK-VVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLH 215 (315)
T ss_dssp HHSCCT-TCE-EEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HhCCcC-CcE-EEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 457665 454 33333 399999999999999999999999854 333333333 7899988776
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=82.93 E-value=9.7 Score=30.67 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=40.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|++.+||-.+|.-|+++|....+.|.+++++.... .......++..|.++..+..
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~ 58 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD-PAPALAEIARHGVKAVHHPA 58 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHTTSCCEEEECC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHhcCCceEEEeC
Confidence 45678999999999999999999999877765443 34445666667877776653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.73 E-value=2.3 Score=36.89 Aligned_cols=58 Identities=24% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++.+..+++|.+.+|. .+|.-|...+..|+.+|.+++++.+ ++.|++.++.+|++.++
T Consensus 186 al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~Vi~~~~---~~~~~~~a~~lGa~~vi 243 (369)
T 1uuf_A 186 PLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVV 243 (369)
T ss_dssp HHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEE
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEe
Confidence 4555678888775555 4588999999999999998555443 34567777788986543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=82.38 E-value=3.7 Score=35.45 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=39.9
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFGAELV 65 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~-~~iv~p~~~~~~k~~~~~~~Ga~v~ 65 (270)
+...+++|.+.+|.. +|.-|..++..|+.+|.. ++++.+ ++.|++.++.+|++.+
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~v 239 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDI---NKDKFARAKEFGATEC 239 (373)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCceE
Confidence 567888988766654 699999999999999984 444422 3466777788888543
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=82.35 E-value=4.2 Score=34.52 Aligned_cols=60 Identities=23% Similarity=0.096 Sum_probs=45.0
Q ss_pred HcCCCCCCCcEEEeeCC---cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS---GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs---GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~~~Ga~v~~~~ 68 (270)
..|.++ |. +|+-... +|.++|++.+++++|++++++.|+.- +..-++.++..|+++..+.
T Consensus 149 ~~g~l~-gl-~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 213 (308)
T 1ml4_A 149 EFGRID-GL-KIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETT 213 (308)
T ss_dssp HSSCSS-SE-EEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred HhCCCC-Ce-EEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 456665 44 3555555 68999999999999999999999843 4445566778898877765
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=82.30 E-value=8 Score=33.07 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=43.5
Q ss_pred HcCCCCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~----~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... +|.++|++.+++++|++++++.|+.- ++.-+..++ ..|+++..+.
T Consensus 161 ~~g~l~-gl~-va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~ 228 (325)
T 1vlv_A 161 NFGRLK-GVK-VVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTS 228 (325)
T ss_dssp HHSCST-TCE-EEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEES
T ss_pred HhCCcC-CcE-EEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 457665 444 555555 59999999999999999999999843 333333343 7899888776
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=81.86 E-value=7.8 Score=32.85 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=43.4
Q ss_pred HcCCCCCCCcEEEeeCC--cHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLL----AFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~--~~~k~~~~~----~~Ga~v~~~~ 68 (270)
..|.++ |.+ |+-... +|.++|+..+++++|++++++.|+.- +..-+..++ ..|+++..+.
T Consensus 142 ~~g~l~-gl~-va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~ 209 (307)
T 2i6u_A 142 RKGALR-GLR-LSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTA 209 (307)
T ss_dssp HHSCCT-TCE-EEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HhCCcC-CeE-EEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 456665 443 555555 59999999999999999999999854 333333333 7898887776
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=81.53 E-value=2.2 Score=36.00 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=42.5
Q ss_pred HHcCCCCCCC-cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+..++++. +.+|...+|.-|.+....|+.+|.+++++.+. +.|++.++.+|++-++
T Consensus 138 ~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~vi 196 (324)
T 3nx4_A 138 LEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGR---ESTHGYLKSLGANRIL 196 (324)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTCSEEE
T ss_pred hhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCCEEE
Confidence 3455566643 45555566999999999999999987776543 4678888889987554
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.24 E-value=8.7 Score=31.54 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=41.2
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|...+||-.+|--|+++|......|.+++++-...........++..|.++..+..
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVA 86 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 56678999999999999999999999887776432223344556677888776653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.87 E-value=8.6 Score=31.26 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=39.5
Q ss_pred CCcEEEeeCCcH--HHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHcC-CEE--EEeCCCCChHHHHHHHHHHHHhC
Q 024252 14 GESVLIEPTSGN--TGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFG-AEL--VLTDPARGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 14 g~~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~k~-~~~~~~G-a~v--~~~~~~~~~~~~~~~a~~~~~~~ 87 (270)
|+..|||-.+|+ -|+++|....+.|.++++.-......... +.++..| .++ +.++-. +.++..+...+..++.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQ-SDEEVINGFEQIGKDV 84 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCC-CHHHHHHHHHHHHHHh
Confidence 566777765553 67888888888998877765543332222 2334433 233 344432 3344444444444443
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=80.16 E-value=7.6 Score=34.50 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHcCCCC-CCCcEEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCH-------------HHHHHHHHcCCEEEEe
Q 024252 3 ADAEEKGLIR-PGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSL-------------ERRMVLLAFGAELVLT 67 (270)
Q Consensus 3 ~~a~~~g~l~-~g~~~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~-------------~k~~~~~~~Ga~v~~~ 67 (270)
+.-.+++++. .|+..|||-.|+--|+++|...+. .|.+++++-...... ...+.++..|.++..+
T Consensus 49 ~y~~~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i 128 (422)
T 3s8m_A 49 AATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSI 128 (422)
T ss_dssp HHHHHTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhhccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEE
Confidence 3344667774 455678888888899999999999 999887765432211 1225667889877665
Q ss_pred CCCC-ChHHHHHHHHHHHHhC
Q 024252 68 DPAR-GMKGAVQKAEEIRDKT 87 (270)
Q Consensus 68 ~~~~-~~~~~~~~a~~~~~~~ 87 (270)
..+- +.+...+...+..++.
T Consensus 129 ~~Dvtd~~~v~~~v~~i~~~~ 149 (422)
T 3s8m_A 129 NGDAFSDAARAQVIELIKTEM 149 (422)
T ss_dssp ESCTTSHHHHHHHHHHHHHHS
T ss_pred EecCCCHHHHHHHHHHHHHHc
Confidence 4322 2233333444444444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.08 E-value=4.4 Score=34.94 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=41.2
Q ss_pred HcCCCC-----CCCcEEEeeCCcHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIR-----PGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~-----~g~~~vv~aSsGN~g~alA~aa~~-~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+...++ +|.+.+|...+|.-|.+.+..|+. .|.+++++.+ ++.|++.++.+|++.++
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~---~~~~~~~~~~lGad~vi 222 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS---RPETQEWVKSLGAHHVI 222 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHTTCSEEE
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 456666 776655666689999999999987 4777665533 46788888889986554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 270 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 6e-83 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 2e-72 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 1e-65 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 2e-63 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 6e-59 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 6e-59 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 3e-52 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 2e-50 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 3e-31 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-26 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 7e-26 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 2e-23 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 2e-21 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 2e-21 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 3e-21 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 3e-18 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 6e-17 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 4e-15 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 1e-12 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 249 bits (637), Expect = 6e-83
Identities = 218/269 (81%), Positives = 248/269 (92%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAF
Sbjct: 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 110
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G ELVLTDPA+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGK
Sbjct: 111 GVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGK 170
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
ID VSGIGTGGT+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP
Sbjct: 171 IDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIP 230
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V
Sbjct: 231 SVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 290
Query: 241 VVFPSFGERYLSSVLFESVKKEAESMVFE 269
+FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct: 291 AIFPSFGERYLSTVLFDATRKEAEAMTFE 319
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 221 bits (565), Expect = 2e-72
Identities = 135/255 (52%), Positives = 179/255 (70%), Gaps = 6/255 (2%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++GL++ G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL
Sbjct: 44 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 100
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAELVLT GMKGAV+KA EI +T +++L QFENP N H TTGPEI K +
Sbjct: 101 GAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQ 159
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
IDA V+G+GTGGT++G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+
Sbjct: 160 IDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFV 219
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P +LD +++DE + + EEA E A+ LA KEGLLVGISSGA AAA+++A++ +
Sbjct: 220 PKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-PDARV 278
Query: 240 VVVFPSFGERYLSSV 254
V V P ERYLS +
Sbjct: 279 VTVAPDHAERYLSIL 293
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 205 bits (522), Expect = 1e-65
Identities = 143/264 (54%), Positives = 188/264 (71%), Gaps = 9/264 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+ AE+ G + G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L
Sbjct: 48 MVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGG 119
G LVLT+ A+GMKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T G
Sbjct: 107 GVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDG 166
Query: 120 KIDALVSGIGTGGTVTGAGKYLKE-HNPEIKLYGVEPVESAVLSGGKPG------PHKIQ 172
K+D +V+G+GTGG++TG + +K +I VEPVES V+S G PHKIQ
Sbjct: 167 KVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ 226
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIGAGFIP LD++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK P
Sbjct: 227 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 286
Query: 233 ENAGKLIVVVFPSFGERYLSSVLF 256
E A KLIVV+ PS ERYLS+ LF
Sbjct: 287 EFADKLIVVILPSASERYLSTALF 310
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 199 bits (506), Expect = 2e-63
Identities = 138/257 (53%), Positives = 185/257 (71%), Gaps = 3/257 (1%)
Query: 1 MIADAEEKGLIRPG-ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 59
MI DAEE+G++RPG V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL A
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKA 106
Query: 60 FGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 119
FGAELVLTDP R M A ++A ++++ +++ QF+NPAN + HYETTGPE+++ G
Sbjct: 107 FGAELVLTDPERRMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEG 165
Query: 120 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFI 179
+IDA V G GTGGT+TG G+YLKE P +K+ VEP S VLSGGK G H QG+G GFI
Sbjct: 166 RIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFI 225
Query: 180 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239
P LD++LLD +Q+ E+A A+ LA +EGL +G+SSG AA+Q+A+ GK +
Sbjct: 226 PENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LGPGKRV 284
Query: 240 VVVFPSFGERYLSSVLF 256
+ P G +YLS+ L+
Sbjct: 285 ACISPDGGWKYLSTPLY 301
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 187 bits (476), Expect = 6e-59
Identities = 140/256 (54%), Positives = 188/256 (73%), Gaps = 10/256 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE++G+++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A
Sbjct: 48 MIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKAL 106
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNS-YVLQQFENPANPKIHYETTGPEIWKGTGG 119
GA LVLT+ A+GMKGA+QKAEEI P +LQQF NPANP+IH +TTGPEIW+ T G
Sbjct: 107 GANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDG 166
Query: 120 KIDALVSGIGTGGTVTGAGKYLK--EHNPEIKLYGVEPVESAVLSGGK------PGPHKI 171
++D +SG+GTGGT+TG +Y+K + ++ VEP +S V++ PGPHKI
Sbjct: 167 QVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKI 226
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 231
QGIGAGFIPG LD+ L+D+ V I++EEAI TA+ L +EG+L GISSGAA AAA+++ +
Sbjct: 227 QGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQED 286
Query: 232 PENAGKLIVVVFPSFG 247
K IVV+ PS G
Sbjct: 287 ESFTNKNIVVILPSSG 302
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (480), Expect = 6e-59
Identities = 107/265 (40%), Positives = 157/265 (59%), Gaps = 10/265 (3%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI DAE G ++P +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A
Sbjct: 84 MIEDAERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 142
Query: 61 GAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 117
GAE+V T + V A ++++ PNS++L Q+ N +NP HY+TT EI +
Sbjct: 143 GAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQC 202
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK-----PGPHKIQ 172
GK+D LV+ +GTGGT+TG + LKE P ++ GV+P S + + ++++
Sbjct: 203 DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVE 262
Query: 173 GIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232
GIG FIP VLD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+
Sbjct: 263 GIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL 322
Query: 233 ENAGKLIVVVFPSFGERYLSSVLFE 257
+ G+ VV+ P Y++ L +
Sbjct: 323 Q-EGQRCVVILPDSVRNYMTKFLSD 346
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 172 bits (437), Expect = 3e-52
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 15/257 (5%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+I+ + + G S++ + TS N G+ L+ +A GYR + +P + +++
Sbjct: 133 IISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL 189
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GT 117
GA++++ A + + K + QF N AN + H T EI+
Sbjct: 190 GAQVIVDPEAPSTVHLLPR-VMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRG 248
Query: 118 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAG 177
G + + +GT G ++ A YL+ +P I+ V+P + + G + +
Sbjct: 249 GLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGM------ 302
Query: 178 FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 237
+LD++ +++ EEA+E +A +GL++G S GAA A + A +
Sbjct: 303 LWINMLDIS--YTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPG 360
Query: 238 LIVVVFPSFGERYLSSV 254
VVV P G +YLS V
Sbjct: 361 DYVVVVPDTGFKYLSLV 377
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 165 bits (418), Expect = 2e-50
Identities = 105/256 (41%), Positives = 160/256 (62%), Gaps = 11/256 (4%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
MI +AE++G I+PG+ + IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+
Sbjct: 47 MIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 105
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GAEL+L +GM+GA + +L QF NP NP HY TTGPEIW+ TGG+
Sbjct: 106 GAELILVTKEQGMEGA-RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGR 164
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 180
I VS +GT GT+TG ++++E + + + G++P E + + G + P ++P
Sbjct: 165 ITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLP 217
Query: 181 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240
G+ + +L+DE + I +A T + LA++EG+ G+SSG A A A+++AK N ++V
Sbjct: 218 GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVV 275
Query: 241 VVFPSFGERYLSSVLF 256
+ G+RYLS+ +F
Sbjct: 276 AIICDRGDRYLSTGVF 291
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 116 bits (290), Expect = 3e-31
Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 26/269 (9%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
M+A E+ +I ++GN G+AF +A G + +I MP + + + + F
Sbjct: 65 MMAGLTEEQKAHG----VITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF 120
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
G E++L A + + F++P I + T
Sbjct: 121 GGEVLLHGANFDEAKAKAIELSQQ---QGFTWVPPFDHP--MVIAGQGTLALELLQQDAH 175
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQ-------- 172
+D + +G GG G +K+ P+IK+ VE +SA L H +
Sbjct: 176 LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFA 235
Query: 173 -GIGAGFIPGV---LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 228
G+ I L LD+ + + S+ K L + S A A +
Sbjct: 236 EGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKY 295
Query: 229 AKRPENAGKLIVVVFP-----SFGERYLS 252
G+ + + G RY+S
Sbjct: 296 IALHNIRGERLAHILSGANVNFHGLRYVS 324
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 104 bits (259), Expect = 1e-26
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 27/266 (10%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR------ 54
+I +A +G V I N +A +AA G + ++ ++
Sbjct: 58 LIPEALAQGCDTL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVG 114
Query: 55 ----MVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 110
+L LV G + + + A E +P G
Sbjct: 115 NIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVG 174
Query: 111 PEIW-----KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK 165
G K D +V TG T G ++ GV+ + +
Sbjct: 175 FAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQ 234
Query: 166 PGPHKIQGIGAGFIPG-------VLDVNLLDETVQISSEEAIETAKLLALKEGLLVG-IS 217
Q + VLD + +E +E +L A EG+L +
Sbjct: 235 ITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVY 294
Query: 218 SGAATAAAIQIAKRPE-NAGKLIVVV 242
G + I++ + E G ++
Sbjct: 295 EGKSMHGMIEMVRNGEFPEGSRVLYA 320
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (255), Expect = 7e-26
Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 45/283 (15%)
Query: 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---SMSLERRMVLLAFGAELVLTDP-ARG 72
++ E +G G+ A A G ++ I M A + GA ++ + +R
Sbjct: 101 LIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160
Query: 73 MKGAVQKAEEIRDKTP------NSYVLQQFENPANPKIHYETTGPEI---WKGTGGKIDA 123
+K A+ +A T V+ P + G E G++
Sbjct: 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPD 220
Query: 124 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG--------GKPGP------- 168
++ GG+ Y ++ ++KL GVE + SG G+ G
Sbjct: 221 VIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSY 280
Query: 169 ----------------HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGL 212
+ G G L E V ++ EEA++ L+ EG+
Sbjct: 281 FLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGI 340
Query: 213 LVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 255
+ + S A A A+++AK + ++I+V G++ L VL
Sbjct: 341 IPALESAHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 95.0 bits (235), Expect = 2e-23
Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 19/235 (8%)
Query: 20 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 79
+SGN +A A G I MP + +G ++++ D + + +
Sbjct: 74 TFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDR--EKM 131
Query: 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGK 139
A+EI ++ + + +++P + T E+++ G +DAL +G GG ++G+
Sbjct: 132 AKEISEREGLTII-PPYDHP-HVLAGQGTAAKELFE-EVGPLDALFVCLGGGGLLSGSAL 188
Query: 140 YLKEHNPEIKLYGVEPVESAVLS------------GGKPGPHKIQGIGAGFIPGVLDVNL 187
+ P ++YGVEP K Q G +
Sbjct: 189 AARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEK 248
Query: 188 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+D+ + +S EE I+ K A + ++V + + AAA + ++ + K I ++
Sbjct: 249 VDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKLK--NKRIGII 301
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 89.3 bits (220), Expect = 2e-21
Identities = 42/239 (17%), Positives = 91/239 (38%), Gaps = 21/239 (8%)
Query: 19 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 78
+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V + V
Sbjct: 68 LAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVA 127
Query: 79 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW--KGTGGKIDALVSGIGTGGTVTG 136
+A + ++ F++P + G A+++ +G GG + G
Sbjct: 128 RA---LQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAG 184
Query: 137 AGKYLKEHNPEIKLYGVEPVESA-------------VLSGGKPGPHKIQGIGAGFIPGVL 183
+K +P + GVEP + + + + ++ + G +
Sbjct: 185 LATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPI 244
Query: 184 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+D + +S E +E +LL + +V + AA ++ R + + ++
Sbjct: 245 LRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL---PQTLALL 300
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 89.4 bits (220), Expect = 2e-21
Identities = 44/252 (17%), Positives = 88/252 (34%), Gaps = 16/252 (6%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ DA KG + + N A G I+ + L+ +L
Sbjct: 61 LLGDALSKGADVV---ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKI 117
Query: 61 GAELVLTDPARGMKGAVQKAEEIRD----KTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
A+ ++ AEEI + + YV+ + Y EI
Sbjct: 118 MGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQ 177
Query: 117 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA-----VLSGGKPGPHKI 171
+ K D++V G+GGT+ G L N +I+ G+ L ++
Sbjct: 178 SEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAEL 237
Query: 172 QGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAK 230
G+ P + + E + + + +EG+++ + +G A + +A+
Sbjct: 238 LGVKVEVRP--ELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLAR 295
Query: 231 RPENAGKLIVVV 242
+ E G+ I+ +
Sbjct: 296 KGE-LGEKILFI 306
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 89.0 bits (219), Expect = 3e-21
Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 28/267 (10%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ D E V I N +A +AA G + ++ + + +
Sbjct: 58 IVPDIVEGDYTHL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYN 114
Query: 61 GAELVLTDPARGMKG---------------AVQKAEEIRDKTPNSYVLQQFENPANPKIH 105
+ G A E + +
Sbjct: 115 RVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLG 174
Query: 106 Y---ETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--- 159
+ G K D +V TG T G + ++ + + ++ ++
Sbjct: 175 FVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKT 234
Query: 160 --VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG-I 216
K+ G+ F LD + +E IE + A +EG+L +
Sbjct: 235 KEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPV 294
Query: 217 SSGAATAAAIQIAKRPE-NAGKLIVVV 242
G + I + K G ++ V
Sbjct: 295 YEGKSMQGLIALIKEDYFKPGANVLYV 321
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 81.4 bits (200), Expect = 3e-18
Identities = 54/288 (18%), Positives = 88/288 (30%), Gaps = 52/288 (18%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVL 57
A+ G E +G G+ A +A G + I M A +
Sbjct: 93 QALLAKRMGKSEII----AETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRM 148
Query: 58 LAFGAELVLTDPARGMKGAVQKA-EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 116
GAE++ G E +RD + + A Y T E +
Sbjct: 149 RLMGAEVIPVHS--GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRM 206
Query: 117 TG-----------GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP--------VE 157
G G++ V GG+ ++ + L GVEP
Sbjct: 207 IGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEH 266
Query: 158 SAVLSGGKPG-----------------------PHKIQGIGAGFIPGVLDVNLLDETVQI 194
A L G+ G + G L+ + V I
Sbjct: 267 GAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSI 326
Query: 195 SSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242
+ +EA+E K L EG++ + S A A A+++ + +L+VV
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVN 374
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.7 bits (190), Expect = 6e-17
Identities = 37/296 (12%), Positives = 84/296 (28%), Gaps = 32/296 (10%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
+++ ++ + ++G+T L+ A+ G I+ +PA+ ++
Sbjct: 161 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQLVQPI 219
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
+ G ++ L N + + +
Sbjct: 220 ANGAFVLSIDTDFDGCMKLI--REITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQV 277
Query: 121 IDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVEPVES-----AVLSGGKPGPH 169
D ++ G G + K K + ++ + + SG K
Sbjct: 278 PDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKP 337
Query: 170 KIQGIGAGFIPGVLDVNLLDET----------VQISSEEAIETAKLLALKEGLLVGISSG 219
+ D +D V+ ++EE + A A G+ + +G
Sbjct: 338 MTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTG 397
Query: 220 AATAAAIQIAKRPENAGKLIVVV--------FPSFGERYLSSVLFESVKKEAESMV 267
A A ++ + A VV F Y S+ + + + + V
Sbjct: 398 VALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPV 453
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 72.0 bits (175), Expect = 4e-15
Identities = 38/269 (14%), Positives = 75/269 (27%), Gaps = 24/269 (8%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++ A E G ++GNT A AA G I+ +PA ++
Sbjct: 68 AVSKAVEGGAQAV-----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLV 122
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
++ + + +T E+ G
Sbjct: 123 HGARIVQVEGNFDDALRLTQKLTEAFPVA----LVNSVNPHRLEGQKTLAFEVVDELGDA 178
Query: 121 IDALVSGIGTGGTVTGAGKYLKE------HNPEIKLYGVEPVESAVLSGGKPGPHK---- 170
+G G +T K ++ G + +A L G+P
Sbjct: 179 PHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLA 238
Query: 171 ----IQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226
I + ++ EE + + LA +EG+ +S AA A
Sbjct: 239 TAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVF 298
Query: 227 QIAKRPE-NAGKLIVVVFPSFGERYLSSV 254
++ + +V+ G + ++
Sbjct: 299 KLLREGRLEPESTVVLTLTGHGLKDPATA 327
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 1e-12
Identities = 38/261 (14%), Positives = 72/261 (27%), Gaps = 26/261 (9%)
Query: 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 60
++G + ++GN G+ A+ A G I +P + L
Sbjct: 45 FCKRWAKQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 99
Query: 61 GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 120
GA + + A+ + P + F++P + H
Sbjct: 100 GATCKVVGELLDEAF--ELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKP 157
Query: 121 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV------------EPVESAVLSGGKPGP 168
+S G G + ++ + + + L
Sbjct: 158 GAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVA 217
Query: 169 HKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI-- 226
+ G L + IS +EA+ + E +LV + GAA AA
Sbjct: 218 KALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSH 277
Query: 227 -----QIAKRPENAGKLIVVV 242
Q+ +VV+
Sbjct: 278 VIQKLQLEGNLRTPLPSLVVI 298
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 270 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 99.97 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 99.97 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 99.96 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 99.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.55 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.49 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.19 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.04 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.99 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.97 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.95 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.84 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.71 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.65 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.59 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.43 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.31 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.04 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.93 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.91 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.9 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.37 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.9 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.85 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.4 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.32 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.69 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.44 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.03 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.94 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 89.12 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.61 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 88.35 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.87 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.14 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.8 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 85.35 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 85.24 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.64 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 84.34 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.27 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.72 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.61 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.52 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 83.52 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.47 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 83.12 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 82.3 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 81.19 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 80.82 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 80.07 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 80.02 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-56 Score=392.07 Aligned_cols=270 Identities=81% Similarity=1.270 Sum_probs=247.4
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.++++..+||++||||||+|+|++|+.+|++|+||+|+++++.|+++++.+||+|+.++...+.......+
T Consensus 51 ~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~ 130 (320)
T d1z7wa1 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA 130 (320)
T ss_dssp HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhH
Confidence 47889999999998889999999999999999999999999999999999999999999999999998644334444455
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+...+.++.+++++|+|+.+++.||+|+++||++|+.+.||+||+|+|+||+++|++.+|+..+|.+++++|||.+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~ 210 (320)
T d1z7wa1 131 EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAI 210 (320)
T ss_dssp HHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCG
T ss_pred HHHHHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCcc
Confidence 55555666899999999999888999999999999997789999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+..+.+.++.+++++.+.+|+.+.++.+|+++.|+|+|+++++++|++++|+++||+||+++++++++.++...++++||
T Consensus 211 ~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~a~~~~~~~~~VV 290 (320)
T d1z7wa1 211 LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFV 290 (320)
T ss_dssp GGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred ccCCCCCCceeeeccCCcCcchhhhhhcceeeccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHHHhhccCCCCEEE
Confidence 88888888889999998889889999999999999999999999999999999999999999999998876556889999
Q ss_pred EEecCCCCCCcchhhcHHHHHhhhcCCCCC
Q 024252 241 VVFPSFGERYLSSVLFESVKKEAESMVFEP 270 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~~~~~~~~~~~~~~~ 270 (270)
+|+||+|.||+++++||+|.++.+.|+.++
T Consensus 291 ~i~~d~G~kYlst~~~d~~~~e~~~~~~~~ 320 (320)
T d1z7wa1 291 AIFPSFGERYLSTVLFDATRKEAEAMTFEA 320 (320)
T ss_dssp EEECBBGGGGTTSGGGHHHHHHHHTCCCCC
T ss_pred EEECCCchhhcccccCHHHHHHHhcCCCCC
Confidence 999999999999999999999999998753
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.2e-53 Score=364.86 Aligned_cols=248 Identities=54% Similarity=0.837 Sum_probs=226.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|+++|.++++ |+++|+||||+|+|++|+.+|++|+||+|+++++.|+++++.+||+|+.++...+.....+.+
T Consensus 44 ~i~~a~~~g~~~~~---vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~ 120 (293)
T d1o58a_ 44 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKA 120 (293)
T ss_dssp HHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCcc---eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHH
Confidence 36678899987765 999999999999999999999999999999999999999999999999998754455566677
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCC-CeEEEEEecCCCc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVEPVESA 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~-~~~vigV~~~~~~ 159 (270)
.+++++. +++|++||+|+.+++.|+.+++.||++|++++||+||+|+|+||+++|++.+||++.+ .+|+++|||++++
T Consensus 121 ~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~ 199 (293)
T d1o58a_ 121 LEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSP 199 (293)
T ss_dssp HHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSC
T ss_pred HHHHhcc-CCEEeeeccccceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCc
Confidence 7777776 7889999999988788999999999999988899999999999999999999998755 5999999999999
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
++..+.+..+.+++++.+..|+.+++..+|+++.|+|+|++++++.|++++||++||+||+++++++++.++. .++++|
T Consensus 200 ~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~~-~~~~~V 278 (293)
T d1o58a_ 200 VLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL-GPDARV 278 (293)
T ss_dssp TTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS-CTTCCE
T ss_pred cccCCCcCCcccccCCCCccchhhhhhhCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHHc-CCcCEE
Confidence 9988888888899999998899999999999999999999999999999999999999999999999988764 368899
Q ss_pred EEEecCCCCCCcch
Q 024252 240 VVVFPSFGERYLSS 253 (270)
Q Consensus 240 v~i~t~gg~~~~~~ 253 (270)
|+|+||+|+||+|+
T Consensus 279 v~i~~d~g~kYls~ 292 (293)
T d1o58a_ 279 VTVAPDHAERYLSI 292 (293)
T ss_dssp EEEECBBGGGCTTT
T ss_pred EEEECCCCcccccC
Confidence 99999999999986
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.2e-52 Score=358.59 Aligned_cols=254 Identities=54% Similarity=0.897 Sum_probs=230.6
Q ss_pred CHHHHHHcCCCCCCC-cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 024252 1 MIADAEEKGLIRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 79 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~ 79 (270)
+|.+|+++|.++++. ++|+++|+||||.|+|++|+++|++|++|+|+.+++.|++.++.+|++++.+....+..+....
T Consensus 47 ~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~ 126 (302)
T d1ve1a1 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126 (302)
T ss_dssp HHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHH
Confidence 467899999988764 5899999999999999999999999999999999999999999999999999976555555666
Q ss_pred HHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCc
Q 024252 80 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 159 (270)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 159 (270)
+.+..++. +++|++||+|+.+++.||+|+++||++|++++||+||+|+|+||+++|++.+|+...|+++||+|||.+++
T Consensus 127 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~ 205 (302)
T d1ve1a1 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSN 205 (302)
T ss_dssp HHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGC
T ss_pred hhhhhhcc-CccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccc
Confidence 66666665 78999999999987889999999999999878999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeE
Q 024252 160 VLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI 239 (270)
Q Consensus 160 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~v 239 (270)
.+..+....+.+++++.+..|+....++.++.+.|+|+|+++++++|++++||++||+||+++++++++.++. .++++|
T Consensus 206 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~~-~~~~~V 284 (302)
T d1ve1a1 206 VLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAREL-GPGKRV 284 (302)
T ss_dssp TTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTTCEE
T ss_pred eeeeccccCcccCccCCCcCCchhhhhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHHh-CccCeE
Confidence 8887777777788998888888888999999999999999999999999999999999999999999887653 478999
Q ss_pred EEEecCCCCCCcchhhc
Q 024252 240 VVVFPSFGERYLSSVLF 256 (270)
Q Consensus 240 v~i~t~gg~~~~~~~~~ 256 (270)
|+|+||+|+||+|+.+|
T Consensus 285 v~i~~g~G~kY~st~~f 301 (302)
T d1ve1a1 285 ACISPDGGWKYLSTPLY 301 (302)
T ss_dssp EEEECBBSGGGTTSTTT
T ss_pred EEEECCCCchhcChhhc
Confidence 99999999999999776
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-51 Score=362.77 Aligned_cols=260 Identities=42% Similarity=0.661 Sum_probs=224.7
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAV 77 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~---~~~ 77 (270)
||.+|+++|+++++. +||++||||||+|+|++|+++|++|+||+|.++++.|++.|+.|||+|+.++...... +..
T Consensus 84 ~i~~a~~~g~~~~~~-~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~ 162 (355)
T d1jbqa_ 84 MIEDAERDGTLKPGD-TIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHV 162 (355)
T ss_dssp HHHHHHHHTCSCTTC-EEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHH
T ss_pred HHHHHHHcCCcccCc-eEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhh
Confidence 478899999999865 6999999999999999999999999999999999999999999999999997543222 233
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
....++..+....++.+++.++.++++||+|+++||++|++++||+||+|+|+||+++|++.+|++.++++||++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~g 242 (355)
T d1jbqa_ 163 GVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 242 (355)
T ss_dssp HHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETT
T ss_pred hHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccC
Confidence 44455555555677888888888888999999999999998889999999999999999999999999999999999999
Q ss_pred CccccC-----CCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 158 SAVLSG-----GKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 158 ~~~~~~-----~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
++.+.. .......+++++.+..+.......+++++.|+|+|+++++++|++++||++||+||+++++++++.++.
T Consensus 243 s~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~~~ 322 (355)
T d1jbqa_ 243 SILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQEL 322 (355)
T ss_dssp CSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGGGC
T ss_pred CcccccccccccccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHHHHHHHhc
Confidence 875532 223345677888777777778889999999999999999999999999999999999999999988764
Q ss_pred CCCCCeEEEEecCCCCCCcchhhcHHHHHh
Q 024252 233 ENAGKLIVVVFPSFGERYLSSVLFESVKKE 262 (270)
Q Consensus 233 ~~~~~~vv~i~t~gg~~~~~~~~~~~~~~~ 262 (270)
.++++||+|+||+|.||+|++++|+|+..
T Consensus 323 -~~g~~VVvvlcd~G~kY~s~~~~d~~~~~ 351 (355)
T d1jbqa_ 323 -QEGQRCVVILPDSVRNYMTKFLSDRWMLQ 351 (355)
T ss_dssp -CTTCEEEEEECBBGGGGTTTTTCHHHHHH
T ss_pred -CCcCEEEEEECCCCccccccccCHHHHHH
Confidence 37899999999999999999999888654
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=2e-50 Score=348.56 Aligned_cols=245 Identities=44% Similarity=0.792 Sum_probs=216.5
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|+++|+++++. +|+++|+||||+|+|++|+++|++|+||+|+++++.|+++|+.+||+|+.++...++.++....
T Consensus 47 ~i~~a~~~g~~~~~~-~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~ 125 (292)
T d2bhsa1 47 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA 125 (292)
T ss_dssp HHHHHHHTTSCCTTS-EEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCc-eeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHH
Confidence 467899999999864 7999999999999999999999999999999999999999999999999998765555666666
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 160 (270)
.+..++. +.++.+||+|+.++..||.++++||++|+++.||+||+|+|+||+++|++.++|+..+++++++|||+++++
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~ 204 (292)
T d2bhsa1 126 LEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSS 204 (292)
T ss_dssp HHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCC
T ss_pred hhccccc-cccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccc
Confidence 6666665 778889999999888999999999999998789999999999999999999999999999999999999987
Q ss_pred ccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 161 LSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 161 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
+...... .....++.+.....++++.|+|+|+++++++|++++||++||+||+++++++++.+.+ ++++||
T Consensus 205 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~~--~~~~VV 275 (292)
T d2bhsa1 205 IPGIRRW-------PTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN--PDAVVV 275 (292)
T ss_dssp CTTCCCC-------CTTTCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTC--TTCEEE
T ss_pred ccccccc-------ccccccccccccccceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHHC--cCCeEE
Confidence 7543221 1122345566778899999999999999999999999999999999999999998764 689999
Q ss_pred EEecCCCCCCcchhhc
Q 024252 241 VVFPSFGERYLSSVLF 256 (270)
Q Consensus 241 ~i~t~gg~~~~~~~~~ 256 (270)
+|+||+|+||+|+.+|
T Consensus 276 ~il~~~G~kYlst~~~ 291 (292)
T d2bhsa1 276 AIICDRGDRYLSTGVF 291 (292)
T ss_dssp EEECBBSGGGGGGTCC
T ss_pred EEECCCCccccccccc
Confidence 9999999999999876
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=8.2e-49 Score=341.04 Aligned_cols=255 Identities=56% Similarity=0.908 Sum_probs=220.6
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+++|.+.++. +||++||||||.|+|++|+++|++|+||+|++++..|+++++.|||+|+.+++..+........
T Consensus 48 ~i~~a~~~g~~~~~~-~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~ 126 (310)
T d1y7la1 48 MVWQAEKDGTLTKGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKA 126 (310)
T ss_dssp HHHHHHHTTSSCTTC-EEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCc-eeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHH
Confidence 477899999999975 6999999999999999999999999999999999999999999999999999643222232222
Q ss_pred HHH-HHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhh-cCCCeEEEEEecCCC
Q 024252 81 EEI-RDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKE-HNPEIKLYGVEPVES 158 (270)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~-~~~~~~vigV~~~~~ 158 (270)
.+. .+...+.++.++++|+.+...|+.+++.||++|+++.||+||+|+|+||+++|++.++|. ..+.+++++|+|.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~ 206 (310)
T d1y7la1 127 EEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVES 206 (310)
T ss_dssp HHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTS
T ss_pred HHHHHhhcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCc
Confidence 222 233346788999999988778999999999999987899999999999999999999985 679999999999998
Q ss_pred cccc----CC--CCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcC
Q 024252 159 AVLS----GG--KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 232 (270)
Q Consensus 159 ~~~~----~~--~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~ 232 (270)
+.+. +. ...++.+.+++.+..|+.+.+...++++.|+|+|+++++++|++++|+++||+||+++++++++.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa~~~a~~~ 286 (310)
T d1y7la1 207 PVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 286 (310)
T ss_dssp CHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSG
T ss_pred hhhhhhhcCCccccCCceeeecccccccHHHhhhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHhhc
Confidence 7553 11 23456677888888888899999999999999999999999999999999999999999999987766
Q ss_pred CCCCCeEEEEecCCCCCCcchhhc
Q 024252 233 ENAGKLIVVVFPSFGERYLSSVLF 256 (270)
Q Consensus 233 ~~~~~~vv~i~t~gg~~~~~~~~~ 256 (270)
..++++||+|+||+|.||+|+.+|
T Consensus 287 ~~~~~~vV~vlcd~g~kY~~t~~~ 310 (310)
T d1y7la1 287 EFADKLIVVILPSASERYLSTALF 310 (310)
T ss_dssp GGTTCEEEEEECBBCSSCCCTTTC
T ss_pred cCCcCEEEEEECCCcchhcCCCCC
Confidence 567899999999999999999776
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3.9e-48 Score=342.75 Aligned_cols=244 Identities=24% Similarity=0.335 Sum_probs=207.2
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
||.+|+ +++++|. +||++||||||+|+|++|+++|++|+||+|+++++.|+++|+.|||+|+.++...+..+..+++
T Consensus 133 ~i~~A~--~~~~~g~-~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a 209 (382)
T d1wkva1 133 IISRLS--RRVEKGS-LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRV 209 (382)
T ss_dssp HHHHHT--TTSCTTC-EEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHH
T ss_pred HHHHHH--hccCCCC-EEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcchhhHHHHHHH
Confidence 355564 4577775 6999999999999999999999999999999999999999999999999998755555666666
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
.+.+++. +++|++||.||.++..||+|++.||++|++ ..+|+||+|+|+||+++|++.++|+.+|++|+|+|||.+
T Consensus 210 ~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~ 288 (382)
T d1wkva1 210 MKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQ 288 (382)
T ss_dssp HHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECT
T ss_pred hhhcccc-CccccccccccceeeehhhcchHHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccceeEecccc
Confidence 6776665 788999999999988999999999999984 358999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCC
Q 024252 158 SAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK 237 (270)
Q Consensus 158 ~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~ 237 (270)
++.+.+. ..++.+..+. -..+..+++..|+|+|+++++++|++++||++|||||+++++++++.+++..+++
T Consensus 289 ~~~i~g~-------~~i~~g~~~~-~~~d~~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~ 360 (382)
T d1wkva1 289 GDSIPGI-------RRVETGMLWI-NMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPG 360 (382)
T ss_dssp TCCCTTC-------CCGGGCCSHH-HHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSE
T ss_pred ccccccc-------cccccCccCc-cccccceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHhhccCCCC
Confidence 8766421 1222222211 1234567899999999999999999999999999999999999999887766778
Q ss_pred eEEEEecCCCCCCcchhhc
Q 024252 238 LIVVVFPSFGERYLSSVLF 256 (270)
Q Consensus 238 ~vv~i~t~gg~~~~~~~~~ 256 (270)
++|+|+||+|+||+|+++.
T Consensus 361 ~vVvIlcD~G~rYlstiyN 379 (382)
T d1wkva1 361 DYVVVVPDTGFKYLSLVQN 379 (382)
T ss_dssp EEEEEECBBGGGCHHHHHH
T ss_pred CEEEEECCCCccchHhhcc
Confidence 8999999999999998553
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-46 Score=322.78 Aligned_cols=244 Identities=19% Similarity=0.178 Sum_probs=208.8
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAE 81 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 81 (270)
|.+|.++| .++||++||||||+|+|++|+++|++|+||||+++++.|++.++.+|++|+.+++ +++++.+.++
T Consensus 46 ~~~a~~~g-----~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~ 118 (319)
T d1p5ja_ 46 CKRWAKQG-----CAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAK 118 (319)
T ss_dssp HHHHHHTT-----CCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHcC-----CCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceeccccccc--cchhHHHHHH
Confidence 56677776 4579999999999999999999999999999999999999999999999999986 5889999999
Q ss_pred HHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcC-CCeEEEEEecCCCcc
Q 024252 82 EIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAV 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~-~~~~vigV~~~~~~~ 160 (270)
++++++++++|+++++|+.+ +.||.+++.||++|+...||++|+|+|+||+++|++.+++... +++++++|+|.++++
T Consensus 119 ~~a~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~ 197 (319)
T d1p5ja_ 119 ALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHS 197 (319)
T ss_dssp HHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCH
T ss_pred HHhhccCccccccccccccc-ccccchhhhhhhccccCCCceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccc
Confidence 99988877889999999887 7899999999999998789999999999999999999999865 789999999999986
Q ss_pred cc----CCCC-----CCcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHH
Q 024252 161 LS----GGKP-----GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 228 (270)
Q Consensus 161 ~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~ 228 (270)
+. .+++ ..+..++++.+.. ++.+.+++.|.++.|+|+|++++++.|++++||++||+||++++++++.
T Consensus 198 ~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~epssa~~~aal~~~ 277 (319)
T d1p5ja_ 198 FHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSH 277 (319)
T ss_dssp HHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred cchhhhccccccccccccccccccccccccccchhhhhccceeeecCHHHHHHHHHHHHHHcCEEEeHHHHHHHHHHHHH
Confidence 54 2222 2234456665432 2345568899999999999999999999999999999999999999764
Q ss_pred hh-----cC--CCCCCeEEEEecCCCCCCcch
Q 024252 229 AK-----RP--ENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 229 ~~-----~~--~~~~~~vv~i~t~gg~~~~~~ 253 (270)
.. ++ ..+++++|+++|+|||.|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~ 309 (319)
T d1p5ja_ 278 VIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ 309 (319)
T ss_dssp HHHHHHHTTSSCSSCSCEEEECCBCSSCCHHH
T ss_pred HHHHHHHhccccCCCCCEEEEEcCCCCCCHHH
Confidence 31 12 246688999999999988875
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.8e-45 Score=316.07 Aligned_cols=244 Identities=53% Similarity=0.867 Sum_probs=206.0
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+|.+|+++|++++|. +|+++|+||||+|+|++|+.+|++|+||+|.++++.|+.+++.+|++|+.+++. +.+....+
T Consensus 48 ~i~~a~~~g~~~~~~-~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~~~~~~~~ 124 (302)
T d1fcja_ 48 MIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQ 124 (302)
T ss_dssp HHHHHHHHTCCCTTC-EEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHH
T ss_pred HHHHHHHcCCCCCCc-eEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--cccchhhh
Confidence 367899999999885 699999999999999999999999999999999999999999999999999964 33333222
Q ss_pred HH---HHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCe--EEEEEec
Q 024252 81 EE---IRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEI--KLYGVEP 155 (270)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~--~vigV~~ 155 (270)
+. ..++..+.++.++++++.++..|++++++||++|+++.||+||+|+|+||+++|++.++|...+.+ .++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~ 204 (302)
T d1fcja_ 125 KAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEP 204 (302)
T ss_dssp HHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEE
T ss_pred HHHHHHhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeecccccccccccccc
Confidence 22 223333567788888888878899999999999998789999999999999999999999998865 4566666
Q ss_pred CCCcccc----C--CCCCCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHh
Q 024252 156 VESAVLS----G--GKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 229 (270)
Q Consensus 156 ~~~~~~~----~--~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~ 229 (270)
..++.+. . .....+.+++++.+..|+.+++.++|+++.|+|+|++++++.|++++||++||++|++++++++++
T Consensus 205 ~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~laaa~~l~ 284 (302)
T d1fcja_ 205 TDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQ 284 (302)
T ss_dssp TTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred ccchhhhccccccccccCCceecccCCCcCchhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHH
Confidence 6665432 1 122345678898888888999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCeEEEEecCCC
Q 024252 230 KRPENAGKLIVVVFPSFG 247 (270)
Q Consensus 230 ~~~~~~~~~vv~i~t~gg 247 (270)
++...++++||+|+||+|
T Consensus 285 ~~~~~~~~~vvvilc~~G 302 (302)
T d1fcja_ 285 EDESFTNKNIVVILPSSG 302 (302)
T ss_dssp TSGGGTTCCEEEEECBCC
T ss_pred HhcCCCcCeEEEEeCCCC
Confidence 665567899999999987
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-44 Score=317.43 Aligned_cols=234 Identities=22% Similarity=0.285 Sum_probs=202.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ 94 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (270)
.++|+++|+||||.|+|++|+.+|++|++|+|+..+..|++.|+.+||+|+.++. ++.+..+.+.++.++. +++|++
T Consensus 75 ~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 151 (331)
T d1tdja1 75 AHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVP 151 (331)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECC
T ss_pred CCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCc--ccccchhhhhhhhhcC-CCcccc
Confidence 4569999999999999999999999999999999999999999999999999985 5677777777777775 789999
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCCC---
Q 024252 95 QFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG--- 167 (270)
Q Consensus 95 ~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~--- 167 (270)
+++||.+ +.||.+++.||.+|. ++||+||+|+|+||+++|++.+|++.+|++|||+|||.+++++. .+++.
T Consensus 152 ~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~ 229 (331)
T d1tdja1 152 PFDHPMV-IAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLP 229 (331)
T ss_dssp SSCCHHH-HHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCS
T ss_pred ccCChHH-hhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecC
Confidence 9999987 789999999999998 56999999999999999999999999999999999999998764 22221
Q ss_pred --CcccccCCCCCC---ccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEE
Q 024252 168 --PHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 242 (270)
Q Consensus 168 --~~~~~gl~~~~~---~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i 242 (270)
.+...++..+.+ ++.+.++++|+++.|+|+|++++++.|++++||++||+||++++++++++++...++++||+|
T Consensus 230 ~~~t~~~gl~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~alAal~~~~~~~~~~g~~Vv~v 309 (331)
T d1tdja1 230 RVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 309 (331)
T ss_dssp CCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCceeccccCCCCCHHHHHHhhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHhhccCCcCeEEEE
Confidence 223345544332 234567889999999999999999999999999999999999999999887766788999999
Q ss_pred ecCCCCCCcchh
Q 024252 243 FPSFGERYLSSV 254 (270)
Q Consensus 243 ~t~gg~~~~~~~ 254 (270)
+| |||.+++.+
T Consensus 310 lt-Ggnid~~~~ 320 (331)
T d1tdja1 310 LS-GANVNFHGL 320 (331)
T ss_dssp CC-CCCCCTTHH
T ss_pred eC-CCCCCcchh
Confidence 96 578777753
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=4.9e-44 Score=311.79 Aligned_cols=235 Identities=20% Similarity=0.298 Sum_probs=198.8
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 95 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (270)
..|+++|+||||+++|++|+++|++|+||+|++.++.|+++|+.+||+|+.+++ .++++...+++++++. +++|++|
T Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~~a~~~-g~~~~~~ 146 (318)
T d1v71a1 70 AGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKEISERE-GLTIIPP 146 (318)
T ss_dssp HCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCHHHHHHHHHHHH-TCBCCCS
T ss_pred ceeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--CchHHHHHHHHHHHhc-CCEecCC
Confidence 369999999999999999999999999999999999999999999999999985 4567777888888876 8899999
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC-----
Q 024252 96 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP----- 166 (270)
Q Consensus 96 ~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~----- 166 (270)
|+||.+ +.||.++++||++|+ +++|+||+|+|+||+++|++.+++...|++++++|+|.+++++. .+.+
T Consensus 147 ~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~ 224 (318)
T d1v71a1 147 YDHPHV-LAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDT 224 (318)
T ss_dssp SSSHHH-HHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCC
T ss_pred cccccc-ccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCC
Confidence 999876 789999999999999 56999999999999999999999999999999999999886542 1111
Q ss_pred CCcccccCCCCC---CccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 024252 167 GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVF 243 (270)
Q Consensus 167 ~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~ 243 (270)
......++..+. .++.+.++++++++.|+|+|+++++++|++++||++||++|+++++++++.++ .++++||+|+
T Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~lAa~~~~~~~--~~~~~Vv~il 302 (318)
T d1v71a1 225 PKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEK--LKNKRIGIII 302 (318)
T ss_dssp CCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGG--GTTCEEEEEE
T ss_pred CCccccccccCCcchHHHHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHhHHH--cCCCcEEEEe
Confidence 122233333322 24456678899999999999999999999999999999999999999988665 3688999999
Q ss_pred cCCCCCCcchhhcHHHH
Q 024252 244 PSFGERYLSSVLFESVK 260 (270)
Q Consensus 244 t~gg~~~~~~~~~~~~~ 260 (270)
|| ||.+++ .|.+++
T Consensus 303 ~G-GN~d~~--~~~~~~ 316 (318)
T d1v71a1 303 SG-GNVDIE--RYAHFL 316 (318)
T ss_dssp CB-CCCCHH--HHHHHH
T ss_pred CC-CCCCHH--HHHHHH
Confidence 65 785544 555543
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.8e-43 Score=302.79 Aligned_cols=228 Identities=23% Similarity=0.334 Sum_probs=194.4
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF 96 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 96 (270)
+|+++|+||||+|+|++|+++|++|+||||++.++.|++.++.+|++++.+++ ++++..+.+++.+++. +++|++||
T Consensus 66 ~vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~ 142 (310)
T d1ve5a1 66 GLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPF 142 (310)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSS
T ss_pred CccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--cchhHHHHHHHHHHhc-CCcCCCCC
Confidence 59999999999999999999999999999999999999999999999999986 4567778888888776 78999999
Q ss_pred CCCCchhhhhhchHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcccc----CCCC---
Q 024252 97 ENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP--- 166 (270)
Q Consensus 97 ~~~~~~~~G~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~--- 166 (270)
+||.+ +.|+.+++.||++|+. ..||++++|+|+||+++|++.++++.++.+++++|||.+++++. .+++
T Consensus 143 ~np~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~ 221 (310)
T d1ve5a1 143 DDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRL 221 (310)
T ss_dssp SSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCC
T ss_pred CChhh-HhhhhhhHHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhcccccccc
Confidence 99998 7899999999999974 46999999999999999999999999999999999999987653 1221
Q ss_pred ---CCcccccCCC---CCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEE
Q 024252 167 ---GPHKIQGIGA---GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 240 (270)
Q Consensus 167 ---~~~~~~gl~~---~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv 240 (270)
..+...++.. +..++.+.++++|+++.|+|+|+++++++|++++||++||+||+++++++++..+ .+++||
T Consensus 222 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vepssaa~lAa~~~~~~~---~~~~Vv 298 (310)
T d1ve5a1 222 EAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR---LPQTLA 298 (310)
T ss_dssp SSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG---SCSEEE
T ss_pred CccccccccccCCCCcchhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHhhHh---cCCCEE
Confidence 1222333332 2334556678899999999999999999999999999999999999999987654 468999
Q ss_pred EEecCCCCCCcc
Q 024252 241 VVFPSFGERYLS 252 (270)
Q Consensus 241 ~i~t~gg~~~~~ 252 (270)
+|+| |||.|++
T Consensus 299 vvl~-GgN~d~~ 309 (310)
T d1ve5a1 299 LLLS-GGNRDFS 309 (310)
T ss_dssp EEEC-BCCCCCC
T ss_pred EEeC-CCCccCC
Confidence 9996 5898775
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.5e-39 Score=282.29 Aligned_cols=242 Identities=19% Similarity=0.216 Sum_probs=198.4
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~-~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
|.+|.++| .++++++|+||||+++|++|+++|++|+||||.+. +..++.+++.+||+|+.+++ +++++.+.+
T Consensus 69 i~~a~~~g-----~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a 141 (351)
T d1v7ca_ 69 VSKAVEGG-----AQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLT 141 (351)
T ss_dssp HHHHHHTT-----CSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHH
T ss_pred HHHHHhcC-----CCeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--ccchhhhhH
Confidence 55666665 45799999999999999999999999999999876 56788889999999999996 578889999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhc------CCCeEEEEEe
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVE 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~------~~~~~vigV~ 154 (270)
++++++. ++++.+ +.++.+ +.||.|+++||++|++..+|++++++|+||+++|++.+++.. .+.+++++|+
T Consensus 142 ~~l~~~~-~~~~~~-~~~~~~-~~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~ 218 (351)
T d1v7ca_ 142 QKLTEAF-PVALVN-SVNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQ 218 (351)
T ss_dssp HHHHHHS-SCEECS-TTSHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEE
T ss_pred HHHhhhh-cccccc-ccCchh-hhhhhhHHHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeee
Confidence 9998886 565544 445655 789999999999999888999999999999999999887654 3678999999
Q ss_pred cCCCccccCCCCCC---cccc--cCCC---CCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHH
Q 024252 155 PVESAVLSGGKPGP---HKIQ--GIGA---GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAI 226 (270)
Q Consensus 155 ~~~~~~~~~~~~~~---~~~~--gl~~---~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~ 226 (270)
+.++.++....+.. .... .+.. ...+..+.+++.+.++.|+|+|++++++.|+++|||++||+||+++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~pssg~alAa~~ 298 (351)
T d1v7ca_ 219 AAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVF 298 (351)
T ss_dssp EGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHH
T ss_pred ccccchhhhcccccCCcccccccccccCcccchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHHHHHHHHHHH
Confidence 99987664332211 1111 1111 11122344677889999999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 227 QIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 227 ~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+++++++ .++++||+++||+|+||.++
T Consensus 299 ~~~~~~~~~~~~~VV~i~tg~G~k~~~~ 326 (351)
T d1v7ca_ 299 KLLREGRLEPESTVVLTLTGHGLKDPAT 326 (351)
T ss_dssp HHHHTTCSCSSEEEEEEECBBGGGCGGG
T ss_pred HHHHhCCCCCCCeEEEEeCCCcccCHHH
Confidence 9998876 57889999999999999985
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.6e-37 Score=283.78 Aligned_cols=245 Identities=18% Similarity=0.158 Sum_probs=196.9
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 80 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a 80 (270)
+..|.+.+.++.+..+|+++||||||+|+|++|+++|++|+||+|.+ .+..|+.+++.+||+|+.+++ +++++.+.+
T Consensus 162 i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~dda~~~~ 239 (477)
T d1e5xa_ 162 VSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLI 239 (477)
T ss_dssp HHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHH
T ss_pred HHHHHHhccccCCcceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--CchhhHHHh
Confidence 45566667777777789999999999999999999999999999985 678899999999999999986 689999999
Q ss_pred HHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCC-CCCEEEEecCCchhHHHHHHHhhhcC------CCeEEEEE
Q 024252 81 EEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGV 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~~~~~------~~~~vigV 153 (270)
++++++. + +|..++.|+.+ +.|++|+++||++|+.+ .||++++|+|+||+++|++.+++.+. ..+++++|
T Consensus 240 ~e~a~~~-~-~~~~~~~N~~~-~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v 316 (477)
T d1e5xa_ 240 REITAEL-P-IYLANSLNSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCA 316 (477)
T ss_dssp HHHHHHS-C-EEEGGGSHHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEE
T ss_pred hhhcccc-c-eeccccccccc-chhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEE
Confidence 9998875 4 45567778877 67999999999999964 59999999999999999999998752 45899999
Q ss_pred ecCCCcccc----CCCC-------CCcccccCCCCCCcccc------ccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 154 EPVESAVLS----GGKP-------GPHKIQGIGAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 154 ~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~------~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
++.+++++. .+.. ..+...++..+. |..+ .++..+.++.|+|+|+.++++. ++++|+++||
T Consensus 317 ~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~-p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l-~~~eGi~veP 394 (477)
T d1e5xa_ 317 QAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMAQ-ADSTGMFICP 394 (477)
T ss_dssp EETTSSTHHHHHHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHH-HHHTTCCCCH
T ss_pred eccchhhHHHHHHcCCCccccccccccccccccccc-ccchHHHHHHHhhcCceEEecCHHHHHHHHHH-HHHCCcEECh
Confidence 999987653 2221 112223332221 2222 2345567899999999999975 6789999999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcch
Q 024252 217 SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 217 ~sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~~ 253 (270)
+||+++++++++.+++. .++++||+++|++|.||.+.
T Consensus 395 ssA~alAal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~ 432 (477)
T d1e5xa_ 395 HTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQS 432 (477)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEeCcCcccCHHH
Confidence 99999999999998876 57899999999999999774
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-36 Score=271.55 Aligned_cols=247 Identities=25% Similarity=0.313 Sum_probs=184.1
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCC-CChHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPA-RGMKGAV 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~---~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~ 77 (270)
+..|.+.|.. +.|+++|+||||+++|++|+++|++|+||||.. ....|+.+++.|||+|+.++.. ..+.++.
T Consensus 90 i~~a~~~G~~----~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~ 165 (386)
T d1v8za1 90 ALLAKFMGKT----RLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAI 165 (386)
T ss_dssp HHHHHHTTCC----EEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHH
T ss_pred HHHHhhcCCc----eeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHH
Confidence 5678888843 368889999999999999999999999999853 4457999999999999999753 3456666
Q ss_pred HHHHHHHHhCCC------ccccCCCCCCCchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCC
Q 024252 78 QKAEEIRDKTPN------SYVLQQFENPANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPE 147 (270)
Q Consensus 78 ~~a~~~~~~~~~------~~~~~~~~~~~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~ 147 (270)
..+.+....... .....+++++.++..+|.+++.||.+|+ +..||+||+|+|+|++++|+..++++ .++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~ 244 (386)
T d1v8za1 166 NEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKK 244 (386)
T ss_dssp HHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTT
T ss_pred HHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccC
Confidence 555444332211 1233455556566678999999998886 34699999999999999999887765 788
Q ss_pred eEEEEEecCCCccccC--------CCCC-Cc------c--ccc-------CCCCC-Cc------cccccccCCcEEEcCH
Q 024252 148 IKLYGVEPVESAVLSG--------GKPG-PH------K--IQG-------IGAGF-IP------GVLDVNLLDETVQISS 196 (270)
Q Consensus 148 ~~vigV~~~~~~~~~~--------~~~~-~~------~--~~g-------l~~~~-~~------~~~~~~~~~~~~~V~~ 196 (270)
+++|+|+|.++..... +.+. .+ . .++ ...+. .+ ..+.....++.+.|+|
T Consensus 245 v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD 324 (386)
T d1v8za1 245 VKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTD 324 (386)
T ss_dssp SEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEH
T ss_pred ceEEEEecCcccccccccccccccCccccccchhheeccCCCCcccccccccccccccccchHHHHHHhcCceEEEEECH
Confidence 9999999987754421 1000 00 0 000 00000 01 1122344557899999
Q ss_pred HHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 197 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 197 ~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+|+++++++|+++|||+++|+||.++++++++.++. .++++||+++||+|+||++++
T Consensus 325 ~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~-~~~~~VV~iltG~G~kD~~~~ 381 (386)
T d1v8za1 325 EEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDIV 381 (386)
T ss_dssp HHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHHHc-CCCCEEEEEeCCCccccHHHH
Confidence 999999999999999999999999999999998764 488999999999999999864
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-34 Score=257.96 Aligned_cols=248 Identities=22% Similarity=0.282 Sum_probs=178.0
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC-CCChHHHH
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDP-ARGMKGAV 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~---~~k~~~~~~~Ga~v~~~~~-~~~~~~~~ 77 (270)
+..|.+.|+ .+.|+++|+||||+++|++|+++|++|+||||...+ ..|+.+|+.|||+|+.++. ...+.++.
T Consensus 94 i~~A~~~G~----~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~ 169 (390)
T d1qopb_ 94 ALLAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDAC 169 (390)
T ss_dssp HHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHH
T ss_pred HHHHhhcCC----ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhH
Confidence 456777774 235788999999999999999999999999998655 5678999999999999974 23455555
Q ss_pred HHHHHHH-HhCCCccccCCC-CCC----CchhhhhhchHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHhhhcCCC
Q 024252 78 QKAEEIR-DKTPNSYVLQQF-ENP----ANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPE 147 (270)
Q Consensus 78 ~~a~~~~-~~~~~~~~~~~~-~~~----~~~~~G~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~ 147 (270)
..+.+.. ......+|.... .++ .....+|.++|.|+.+|+ +..||+||+|+|+|++++|++.+|++ .+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~ 248 (390)
T d1qopb_ 170 NEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTS 248 (390)
T ss_dssp HHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTT
T ss_pred HHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-ccc
Confidence 5554443 333233333222 222 222458999999998775 34699999999999999999999987 467
Q ss_pred eEEEEEecCCCccccCC--------CCC--------------------CcccccCCCCCC-c--cccccccCCcEEEcCH
Q 024252 148 IKLYGVEPVESAVLSGG--------KPG--------------------PHKIQGIGAGFI-P--GVLDVNLLDETVQISS 196 (270)
Q Consensus 148 ~~vigV~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~~ 196 (270)
+++++++|......... .+. .....++....+ | ..+.....++.+.|+|
T Consensus 249 ~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD 328 (390)
T d1qopb_ 249 VGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITD 328 (390)
T ss_dssp SEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEH
T ss_pred eeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccccccccchhHHHHHHhcCceEEEEECH
Confidence 99999998765432211 100 000111111000 0 1123345678999999
Q ss_pred HHHHHHHHHHHHHcCCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcchh
Q 024252 197 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 254 (270)
Q Consensus 197 ~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~~ 254 (270)
+|+++++++|++.|||+++|+++.|++++++++++...++++||+++||+|+||++++
T Consensus 329 ~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~ 386 (390)
T d1qopb_ 329 DEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386 (390)
T ss_dssp HHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhhhcCCCCCEEEEEECCCCccCHHHH
Confidence 9999999999999999999988899999998876654566777777888899998853
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=1.6e-31 Score=231.98 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=173.8
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCCCChHHH-H
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF---GAELVLTDPARGMKGA-V 77 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~---Ga~v~~~~~~~~~~~~-~ 77 (270)
|.+|+++|.. ...++++|+||||.|+|++|+.+|++|++|+|...+..+...+..+ |++++..+........ .
T Consensus 62 i~~a~~~g~~---~~~~~~~s~gN~g~a~A~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (325)
T d1j0aa_ 62 LGDALSKGAD---VVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAE 138 (325)
T ss_dssp HHHHHHTTCS---EEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHH
T ss_pred HHHHHHCCCC---eeEEEeeCcchHHHHHHHHHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHH
Confidence 5567777732 1245667999999999999999999999999998877666655544 3334333332211111 2
Q ss_pred HHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCC
Q 024252 78 QKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE 157 (270)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 157 (270)
..+.+........+++.++.+......++.+++.|+.+|.+..||+||+|+|+|++++|+..+++...+++++++|++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~ 218 (325)
T d1j0aa_ 139 EIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGR 218 (325)
T ss_dssp HHHHHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred HHHHHHHhhccCceeeecCCCccccccccchhhcccccccccccceeecccccchhhhhHHHHHHhhCcccccccccccc
Confidence 22223322333444444443333336688999999999998889999999999999999999999999999999999987
Q ss_pred CccccCCCC---CCcccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-hHHHHHHHHHHHhhcCC
Q 024252 158 SAVLSGGKP---GPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE 233 (270)
Q Consensus 158 ~~~~~~~~~---~~~~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~sg~alaa~~~~~~~~~ 233 (270)
......... .....+..+.+...+....+..++.+.|+|+|++++++.|++++||++|| +||+++++++++++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~ 298 (325)
T d1j0aa_ 219 FGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGE 298 (325)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTC
T ss_pred chhhhhhhhcccccccccccCCCcccchhhhhceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCC
Confidence 754321100 00111222222223344556788899999999999999999999999999 79999999999988765
Q ss_pred CCCCeEEEEecCCCCC
Q 024252 234 NAGKLIVVVFPSFGER 249 (270)
Q Consensus 234 ~~~~~vv~i~t~gg~~ 249 (270)
.+++||+|+|| |+.
T Consensus 299 -~~~~vv~i~tG-Gl~ 312 (325)
T d1j0aa_ 299 -LGEKILFIHTG-GIS 312 (325)
T ss_dssp -SCSEEEEEECC-CHH
T ss_pred -CCCeEEEEECC-chH
Confidence 58999999977 773
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=99.97 E-value=9.6e-30 Score=220.21 Aligned_cols=246 Identities=17% Similarity=0.129 Sum_probs=172.8
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeCCCCCh
Q 024252 2 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPARGM 73 (270)
Q Consensus 2 i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--------~k~~~~~~~Ga~v~~~~~~~~~ 73 (270)
|.+++++|. + ...++++|+||||.|+|++|+.+|++|+||+|+..+. .+...++.+|+.++.++...+.
T Consensus 59 i~~a~~~g~--~-~v~~~~~s~gN~g~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 135 (338)
T d1tyza_ 59 IPEALAQGC--D-TLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDI 135 (338)
T ss_dssp HHHHHHTTC--C-EEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC----
T ss_pred HHHHHHCCC--C-eEEEEccCCchHHHHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcch
Confidence 456777773 1 1234567999999999999999999999999986553 3566788999999999863221
Q ss_pred --H-HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHHh-----hCCCCCEEEEecCCchhHHHHHHHhhhcC
Q 024252 74 --K-GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG-----TGGKIDALVSGIGTGGTVTGAGKYLKEHN 145 (270)
Q Consensus 74 --~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~EI~~q-----l~~~~d~iv~~vG~Gg~~aGi~~~~~~~~ 145 (270)
. ...+......+...+.++..+..++.. ..+..+.+.|+..| ....||+||+|+|+|++++|++.+|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~ 214 (338)
T d1tyza_ 136 GFRRSWEDALESVRAAGGKPYAIPAGCSDHP-LGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADG 214 (338)
T ss_dssp ---CHHHHHHHHHHHTTCCEEEECGGGTSST-TTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHhhhhhcccceeeecccCccCc-cccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHh
Confidence 1 122223333344435555544444332 45555555554333 34579999999999999999999999999
Q ss_pred CCeEEEEEecCCCccccCCCCC----CcccccCC---CCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech-h
Q 024252 146 PEIKLYGVEPVESAVLSGGKPG----PHKIQGIG---AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-S 217 (270)
Q Consensus 146 ~~~~vigV~~~~~~~~~~~~~~----~~~~~gl~---~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep-~ 217 (270)
+.++++++++..++........ ........ .....+.+..++.++++.|+|+|++++++.|++++||++|| +
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~ 294 (338)
T d1tyza_ 215 RADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVY 294 (338)
T ss_dssp CGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTT
T ss_pred hhhcccceeeccchhhhccccccccccccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCChHH
Confidence 9999999998887543211000 00000011 11123445678889999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 218 SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 218 sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
||+++++++++++++. .++++||+|+|| |...+.
T Consensus 295 s~~a~a~l~~~~~~~~~~~g~~Vv~i~TG-G~~~~~ 329 (338)
T d1tyza_ 295 EGKSMHGMIEMVRNGEFPEGSRVLYAHLG-GVPALN 329 (338)
T ss_dssp HHHHHHHHHHHHHTTCSCTTCEEEEEECC-CGGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCcCeEEEEECC-chhhHH
Confidence 8999999999988876 578999999966 654443
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=99.96 E-value=4.1e-29 Score=216.86 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=178.1
Q ss_pred CHHHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHH-----------HHHHHHHcCCEEEEeCC
Q 024252 1 MIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-----------RRMVLLAFGAELVLTDP 69 (270)
Q Consensus 1 ~i~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~-----------k~~~~~~~Ga~v~~~~~ 69 (270)
+|.+|+++|. + ...++++|+||||+|+|++|+++|++|++|+|.+.+.. ++..++.+|+++..++.
T Consensus 58 ~i~~a~~~g~--~-~i~~~~as~gN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~ 134 (341)
T d1f2da_ 58 IVPDIVEGDY--T-HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIED 134 (341)
T ss_dssp THHHHHHSCC--S-EEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHCCC--C-EEEEEccCcchHHHHHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCC
Confidence 4567777772 1 12346789999999999999999999999999987654 45667899999999986
Q ss_pred CCCh--HHHHH-HHHHHHHhCCCccccCCC--CCCCchhhhhhchHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHh
Q 024252 70 ARGM--KGAVQ-KAEEIRDKTPNSYVLQQF--ENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYL 141 (270)
Q Consensus 70 ~~~~--~~~~~-~a~~~~~~~~~~~~~~~~--~~~~~~~~G~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~aGi~~~~ 141 (270)
..+. ..... ............++.+.+ .++.. ..++.+.+.++.+|+ ...||++|+|+|+|++++|++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~ 213 (341)
T d1f2da_ 135 GFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGM 213 (341)
T ss_dssp CCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhhccCccccCCcccccccc-hhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHH
Confidence 4321 12222 233333333333433332 23433 567778777777664 457999999999999999999999
Q ss_pred hhcCCCeEEEEEecCCCccccCCCCC---Cc--ccccCCCCCCccccccccCCcEEEcCHHHHHHHHHHHHHHcCCeech
Q 024252 142 KEHNPEIKLYGVEPVESAVLSGGKPG---PH--KIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI 216 (270)
Q Consensus 142 ~~~~~~~~vigV~~~~~~~~~~~~~~---~~--~~~gl~~~~~~~~~~~~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep 216 (270)
+...+.++++++.+............ .. .......+.....+..++.+..+.|+|+|++++++.|+++|||++||
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~veP 293 (341)
T d1f2da_ 214 AQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDP 293 (341)
T ss_dssp GGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCT
T ss_pred HHhcccccccccccccchhhhhhhhhccccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccCh
Confidence 99999999999998877532210000 00 00111122233445567888999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHhhcCC-CCCCeEEEEecCCCCCCcc
Q 024252 217 S-SGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLS 252 (270)
Q Consensus 217 ~-sg~alaa~~~~~~~~~-~~~~~vv~i~t~gg~~~~~ 252 (270)
+ ||++++++.++++++. .++++||+|+|| |..++.
T Consensus 294 ~ys~~a~agl~~l~~~~~i~~~~~Vv~i~TG-G~~~~~ 330 (341)
T d1f2da_ 294 VYEGKSMQGLIALIKEDYFKPGANVLYVHLG-GAPALS 330 (341)
T ss_dssp TTHHHHHHHHHHHHHTTCSCTTCEEEEEECC-CGGGGG
T ss_pred hhhHHHHHHHHHHHHcCCCCCcCeEEEEECC-CcccHH
Confidence 5 9999999999998877 578999999966 775554
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.6e-19 Score=158.76 Aligned_cols=233 Identities=14% Similarity=0.087 Sum_probs=165.6
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHc-CCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC--Cc
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP--NS 90 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~-G~~~~iv~p~-~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~--~~ 90 (270)
..+|+++||||+|.|.+.+++.. +++++|+.|+ .++..+..+|..+|++|+.+.-.++++++.+.+.++..+.+ ..
T Consensus 126 ~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~ 205 (428)
T d1vb3a1 126 PVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVA 205 (428)
T ss_dssp CEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHH
T ss_pred cceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhc
Confidence 45799999999999999888766 5889999996 57888999999999988765544579999998888875431 01
Q ss_pred cccCCCCCCCc--hhhhhhchHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc---cc
Q 024252 91 YVLQQFENPAN--PKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LS 162 (270)
Q Consensus 91 ~~~~~~~~~~~--~~~G~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~---~~ 162 (270)
+.+.. .|.-| .+.+|.+..+|++.|+.. .++.+++|+|+.|++.+.+.+.+.-.|--+++...-.+... +.
T Consensus 206 ~~l~s-~NSIN~~Rl~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~Ndil~~f~~ 284 (428)
T d1vb3a1 206 LGLNS-ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLH 284 (428)
T ss_dssp HTEEC-CSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHH
T ss_pred CCeee-ecccChhHHhhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccCccchhhhh
Confidence 11111 12223 256999999999999853 47899999999999999988888766777777666554421 11
Q ss_pred CCCCC-----CcccccCCCCCCcccccc----------ccCCcEEEcCHHHHHHHHHHHHHHcCCeechhHHHHHHHHHH
Q 024252 163 GGKPG-----PHKIQGIGAGFIPGVLDV----------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 227 (270)
Q Consensus 163 ~~~~~-----~~~~~gl~~~~~~~~~~~----------~~~~~~~~V~~~e~~~a~~~l~~~~gi~~ep~sg~alaa~~~ 227 (270)
.|... .+....+..+ .|.++.+ +.......++|+|....++..++++|+++||.||++++++.+
T Consensus 285 tG~y~~~~~~~TlSpAMDI~-~pSNfERl~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~DPHTAvg~~a~~~ 363 (428)
T d1vb3a1 285 DGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRD 363 (428)
T ss_dssp HSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCceecccccccCchHhhhc-ccCCHHHHHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeCCcHHHHHHHHHH
Confidence 22221 1122222222 2444321 222346667777778888888899999999999999999865
Q ss_pred HhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 228 IAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 228 ~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
.. .++...|++.|.++.|+.+.
T Consensus 364 ~~----~~~~~~V~LaTAHP~KF~d~ 385 (428)
T d1vb3a1 364 QL----NPGEYGLFLGTAHPAKFKES 385 (428)
T ss_dssp TC----CTTCEEEEEECBCGGGGHHH
T ss_pred hh----CCCCCEEEEECcCchhCHHH
Confidence 32 35678899999999997775
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.4e-11 Score=110.43 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=158.3
Q ss_pred CcEEEeeCCcHHHHHHHHHHH-HcCCcEEEEeCCC-CCHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCC--C
Q 024252 15 ESVLIEPTSGNTGIGLAFMAA-AKGYRLIITMPAS-MSLERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDKTP--N 89 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~-~~G~~~~iv~p~~-~~~~k~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~--~ 89 (270)
.-+|++||||-+|.|.+.+++ +-+++++|+.|.+ +++...++|...++ +|+.+.-.++++++...+.++..+.. .
T Consensus 152 ~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~ 231 (511)
T d1kl7a_ 152 QITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNS 231 (511)
T ss_dssp CEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC-
T ss_pred eEEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhc
Confidence 348999999999999999886 5689999999984 78888888887754 77766555689999999988876542 1
Q ss_pred ccccCCCCCCCchhh------hhhchHHHHHHhhCCCCCEEEEecCCchhHHHHHHHhhhcCCCeEEEEEecCCCcc---
Q 024252 90 SYVLQQFENPANPKI------HYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV--- 160 (270)
Q Consensus 90 ~~~~~~~~~~~~~~~------G~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~--- 160 (270)
.+-+. ..|.-||.. .|-.....+..+..+++=.++||.|+=|.+.+-+.+-+.--|--|+|...-++...
T Consensus 232 ~~~l~-s~NSiNw~Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~NdiL~rf 310 (511)
T d1kl7a_ 232 KHNVG-AVNSINWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDILDRF 310 (511)
T ss_dssp -CCBC-CCCSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHHHHH
T ss_pred ccccc-cccceeehhhhhhHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcchHHHH
Confidence 12222 234444322 33333333322222345579999999888887766665545666888887776621
Q ss_pred ccCCCC--CCcccccCCCCC---Cccccccc---------------------------------------------cCCc
Q 024252 161 LSGGKP--GPHKIQGIGAGF---IPGVLDVN---------------------------------------------LLDE 190 (270)
Q Consensus 161 ~~~~~~--~~~~~~gl~~~~---~~~~~~~~---------------------------------------------~~~~ 190 (270)
+..|.. .......+++.+ +|.++.+- -.-.
T Consensus 311 ~~tG~y~~~~~v~~T~SPSMDI~vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F~ 390 (511)
T d1kl7a_ 311 LKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFT 390 (511)
T ss_dssp HHHSEEECCSSCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEE
T ss_pred hcCCCCCCcCcccCcCccHHhhhhhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhcccccee
Confidence 111211 111111222111 23332210 0113
Q ss_pred EEEcCHHHHHHHHHHHHHHc----CCeechhHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCCcch
Q 024252 191 TVQISSEEAIETAKLLALKE----GLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 253 (270)
Q Consensus 191 ~~~V~~~e~~~a~~~l~~~~----gi~~ep~sg~alaa~~~~~~~~~~~~~~vv~i~t~gg~~~~~~ 253 (270)
...++|+|+.+.++.+++++ |.++||.||.++.++.++..+....+...|++-|.+..|+.+.
T Consensus 391 s~svsD~et~~tIk~vye~~~n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpda 457 (511)
T d1kl7a_ 391 SERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA 457 (511)
T ss_dssp EEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred EEEeCHHHHHHHHHHHHHhcCccCCeEECCcHHHHHHHHHHHHHhccCCCCcEEEEeCcChhhhHHH
Confidence 67899999999999999987 9999999999999999886544335567899999999998775
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.55 E-value=0.02 Score=42.32 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
+++++..+++|.+.+| ..+|.-|...+..++.+|.+++++- .++.|++..+.+|++...+.
T Consensus 17 ~a~~~~~~~~g~~vlV-~G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLV-IGAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCCCCEEEE-EcccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEec
Confidence 4667788999987555 5789999999999999998766653 46789999999999766554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.49 E-value=0.0088 Score=45.09 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=52.1
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.+.+.++||.+.+|...+|.-|+++...|+..|.+++.+.. ++.|.+.++.+|++.++...
T Consensus 22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~ 82 (182)
T d1v3va2 22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK 82 (182)
T ss_dssp HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence 35788999998888899999999999999999999887764 36789999999998776554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.39 E-value=0.009 Score=44.19 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.|+++..++||.+. +...+|.-|...+..++.+|.+++++ +.++.|++..+.+||+..+..
T Consensus 18 ~al~~~~~~~g~~V-lV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 18 KGLKQTNARPGQWV-AISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp HHHHHHTCCTTCEE-EEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHhCCCCCCEE-EEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccc
Confidence 46778889999864 44677999999999999999876665 345788999999999766544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.019 Score=42.64 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=50.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+|+++..++||.+ |+...+|.-|...+..++..|.+-++++. ..+.|++..+.+||+......
T Consensus 17 ~a~~~~~~~~gd~-VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 79 (171)
T d1pl8a2 17 HACRRGGVTLGHK-VLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS 79 (171)
T ss_dssp HHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHhCCCCCCE-EEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence 4778889999976 55567899999999999999996555544 457889999999998766654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.014 Score=43.64 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=47.5
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+.++++||.+.+|...+|.-|..+...|+..|.++++... ++.|++.++.+||+.++-
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence 4578999987777788999999999999999998777644 468888899999975543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.018 Score=42.45 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
+++++..++||.+.+| ..+|.-|...+..++..|.+++++ +.++.|++.++.+|++......
T Consensus 18 ~al~~~~~~~g~~vlv-~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~ 79 (168)
T d1rjwa2 18 KALKVTGAKPGEWVAI-YGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPL 79 (168)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHhCCCCCCEEEE-eecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccc
Confidence 4566777999976444 567999999999999999986555 3467899999999998776654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.97 E-value=0.034 Score=42.30 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=50.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.++++..++||.+ |+...+|--|...+..++.+|...++++. .++.|++..+.+|++.+.....
T Consensus 16 ~a~~~a~v~~G~t-VlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~ 79 (195)
T d1kola2 16 HGAVTAGVGPGST-VYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLSLD 79 (195)
T ss_dssp HHHHHTTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETTSS
T ss_pred HHHHHhCCCCCCE-EEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeCCC
Confidence 3677889999986 55567899999999999999987666654 3578999999999998766543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.95 E-value=0.025 Score=41.84 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.++++..++||.+.+|...+|.-|..++..++..|...++++.. ++.|++.++.+|++.....
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~ 80 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA 80 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence 46788899999876666657999999999999999866665554 4688999999999765543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.034 Score=41.60 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=46.1
Q ss_pred HH-HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 5 AE-EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 5 a~-~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
|+ +.+++++|.+ |+...+|.-|......|+.+|.+-++++. .++.|++.++.+||+.++...
T Consensus 19 al~~~~~~~~G~~-VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~ 81 (182)
T d1vj0a2 19 AFDEYPESFAGKT-VVIQGAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNRR 81 (182)
T ss_dssp HHHTCSSCCBTCE-EEEECCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhCCCCCCE-EEEECCCccchhheecccccccccccccc--cccccccccccccceEEEecc
Confidence 44 5578899976 54556799999999999999985433332 367889999999997665443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.04 Score=40.83 Aligned_cols=57 Identities=30% Similarity=0.457 Sum_probs=46.1
Q ss_pred HcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 7 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 7 ~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+.+.++||.+.+|...+|.-|.+....|+.+|.++++.+. ++.|++.++.+|++-++
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi 78 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 78 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence 5678999987666666799999999999999998777664 35788899999996544
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.011 Score=38.15 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=45.9
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCC
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 62 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga 62 (270)
..+.+.++||.+.+|...+|.-|......++.+|.+++.+... +.|.+.++.+||
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s---~~k~~~~~~lGA 77 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGA 77 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTE
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC---HHHHHHHHHCCC
Confidence 3466788899888888899999999999999999998877553 477888888886
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.59 E-value=0.0091 Score=45.34 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=50.0
Q ss_pred HcCCCCCCCcEEEe-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 7 EKGLIRPGESVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 7 ~~g~l~~g~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+.+.++||.+.+|. +.+|.-|.+....|+.+|.+++.++..... ..+.+.++.+||+.++..
T Consensus 22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 45789999876664 678999999999999999999988866443 567788899999877654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.43 E-value=0.032 Score=41.62 Aligned_cols=60 Identities=23% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.|+++..++||.+.+| ..+|--|...+..|+.+|.+-++++. .++.|++..+.+||+-.+
T Consensus 18 ~a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d--~~~~r~~~a~~lGa~~~i 77 (174)
T d1jqba2 18 HGAELADIEMGSSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVG--SRPICVEAAKFYGATDIL 77 (174)
T ss_dssp HHHHHTTCCTTCCEEE-ECCSHHHHHHHHHHHTTTCSCEEEEC--CCHHHHHHHHHHTCSEEE
T ss_pred HHHHHhCCCCCCEEEE-EcCCcchhhhhhhhhccccccccccc--chhhhHHHHHhhCccccc
Confidence 4678899999987555 57899999999999999986455444 357889999999986544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.40 E-value=0.014 Score=43.53 Aligned_cols=60 Identities=32% Similarity=0.441 Sum_probs=47.9
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+++++.++||.+.+|...+|.-|.+....|+..|.+++.+... +.|++.++.+|++.++
T Consensus 18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred HHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceee
Confidence 46778899999876666668999999999999999987766543 4678888899996544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.31 E-value=0.041 Score=40.99 Aligned_cols=59 Identities=34% Similarity=0.457 Sum_probs=47.8
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
.+.+.++||.+.+|...+|.-|..+.-.|+.+|.++++... ++.|.+.++.+|++.++.
T Consensus 18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~ 76 (183)
T d1pqwa_ 18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD 76 (183)
T ss_dssp HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred HHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence 36678999987666677899999999999999998887764 357888899999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.016 Score=43.04 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=46.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.|+++..++||.+.+| ..+|.-|...+..++.+|.+++++-. ++.|++..+.+||+..+
T Consensus 18 ~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i 76 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYI 76 (168)
T ss_dssp HHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEE
T ss_pred HHHHHhCcCCCCEEEE-ECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEe
Confidence 4777888999986445 56799999999999999998766543 34578888999996544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.025 Score=41.82 Aligned_cols=61 Identities=23% Similarity=0.196 Sum_probs=48.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.|+++.+++||.+.+| ..+|.-|...+..|+.+|.+.+++.+ ++.|++..+.+|++..+..
T Consensus 21 ~al~~~~~~~G~~VlI-~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGV-VGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVNS 81 (168)
T ss_dssp HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEET
T ss_pred HHHHHhCCCCCCEEEE-eccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEEC
Confidence 5778899999987555 56799999999999999998876544 3456788899999866543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.91 E-value=0.089 Score=38.90 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
+++.+.++||.+ |+....|--|...+..|+.+|...++++.. ++.|++..+.+|++-++
T Consensus 20 ~~~~~~~~~g~~-VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i 78 (174)
T d1f8fa2 20 CINALKVTPASS-FVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI 78 (174)
T ss_dssp HHTTTCCCTTCE-EEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred HHHhhCCCCCCE-EEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence 467788999986 555677999999999999999987777653 56889999999985443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.90 E-value=0.053 Score=40.14 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=49.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 4 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 4 ~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
..++.|.+++|.+.+|..-+|--|.+..-.|+.+|.+++..+.. ..|.+.++.+|++.+.
T Consensus 14 ~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s---~~k~~~~~~lGad~vi 73 (167)
T d1tt7a2 14 RLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVI 73 (167)
T ss_dssp HHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC---HHHHHHHHhhcccceE
Confidence 34567888888778888889999999999999999998887665 3578888999998764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.37 E-value=0.11 Score=38.83 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=45.0
Q ss_pred HHcCCCCCC--CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 024252 6 EEKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 70 (270)
Q Consensus 6 ~~~g~l~~g--~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 70 (270)
.+.+.+++| .+.+|...+|.-|....-.|+.+|.+.++.+.. .+..+....+.+|++.++-...
T Consensus 21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~-~~e~~~~l~~~~gad~vi~~~~ 86 (187)
T d1vj1a2 21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG-TQEKCLFLTSELGFDAAVNYKT 86 (187)
T ss_dssp HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES-SHHHHHHHHHHSCCSEEEETTS
T ss_pred HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccc-hHHHHhhhhhcccceEEeeccc
Confidence 355778887 445555668999999999999999987766544 2334444556789987766543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.11 Score=38.80 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++.|...++.+.+|...+|.-|...--.|+.+|.+++.+... +.|.+.++.+||+.++-.
T Consensus 24 ~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~---~~k~~~~~~lGad~vi~~ 83 (177)
T d1o89a2 24 EDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGASRVLPR 83 (177)
T ss_dssp HHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTEEEEEEG
T ss_pred HHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc---hhHHHHHHhhcccccccc
Confidence 455666555567888888999999999999999998887654 467788899999877643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.85 E-value=0.24 Score=36.28 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
.++||.+ |+...+|.-|...+..++.+|...++++.. ++.|++.++.+|++..+..
T Consensus 29 ~~~~g~~-vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~ 84 (172)
T d1h2ba2 29 TLYPGAY-VAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA 84 (172)
T ss_dssp TCCTTCE-EEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred ccCCCCE-EEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence 4788875 666778999999999999999876666543 5688999999999655444
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.40 E-value=0.19 Score=37.09 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
+++.+.++||.+ |+....|--|...+..++.+|...+++... ++.|++..+.+|++.+..
T Consensus 20 ~~~~a~v~~G~~-VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~ 79 (174)
T d1e3ia2 20 AINTAKVTPGST-CAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN 79 (174)
T ss_dssp HHTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHHhhCCCCCCE-EEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence 457789999976 566688999999999999999877776654 457889999999976553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.32 E-value=0.14 Score=38.08 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=50.2
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
..+.|.+++|.+.+|...+|.-|.+.--.|+.+|.+++..... +.|.+.++.+||+.+.-
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s---~~k~~~~~~lGa~~vi~ 82 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVLA 82 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEEE
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCc---hHHHHHHHhcccceeee
Confidence 4467899999988999999999999999999999999887654 35788888999987654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.69 E-value=0.24 Score=36.47 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=47.5
Q ss_pred HHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 5 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 5 a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
++++++++||.+ |+....|--|......|+.+|...++++.. ++.|++..+.+||+-.+
T Consensus 19 ~~~~a~~~~G~~-VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i 77 (174)
T d1p0fa2 19 AVNTAKVTPGST-CAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL 77 (174)
T ss_dssp HHTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence 357789999975 556678999999999999999877776654 56788999999997654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.44 E-value=0.2 Score=36.73 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+++.++||.+ |+....|--|......++.+|...++++.. ++.|++..+.+||+-.+
T Consensus 21 ~~~~~~~~G~t-VlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i 78 (176)
T d2fzwa2 21 VNTAKLEPGSV-CAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence 46789999986 454555667888899999999887777654 56778888999986544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.04 E-value=0.26 Score=36.39 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=46.9
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 67 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~ 67 (270)
++++++++|.+ |+....|--|.....+|+.+|..-+|++.. ++.|++..+.+||+..+-
T Consensus 22 ~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in 80 (176)
T d1d1ta2 22 VKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS 80 (176)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence 47788999975 666688999999999999999866665543 567889999999976553
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.03 E-value=0.29 Score=33.32 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 024252 11 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS 50 (270)
Q Consensus 11 l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~ 50 (270)
+.|+.++|-.-.+|..|+-+|.+|+++|++++++-|...+
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 4667777888999999999999999999999999886443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.94 E-value=0.37 Score=35.16 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=40.2
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+.+.++||.+.+|. ..|--|...+..++++|-..++.+.. .+.|++..+.+||+-.+
T Consensus 21 ~~~a~~k~g~~VlI~-G~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~i 78 (175)
T d1cdoa2 21 VNTAKVEPGSTCAVF-GLGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFV 78 (175)
T ss_dssp HTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEE
T ss_pred HHhhCCCCCCEEEEE-ecCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEE
Confidence 467899999864444 45556666666677777766665543 45788889999996654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=89.12 E-value=1.2 Score=34.48 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=46.2
Q ss_pred CCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHcCCEEEEeCC
Q 024252 10 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-----SMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 10 ~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~-----~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
..+|+.+.|||-.+|--|+++|..-.+.|.+.++++.+ ......+..++..|+++..+.-
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~ 69 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAAC 69 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcccccccccc
Confidence 57888888999999999999999999999875555533 2233456678889999887654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.61 E-value=1.6 Score=34.38 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=45.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 87 (270)
|+..|||.+++--|+++|..-.+.|.++++.-..... ....+..+.+|.++..+..+ .+.+...+......++.
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 5778999999999999999999999988776543211 11122345667776655422 23333333344444444
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.35 E-value=1 Score=33.08 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=43.0
Q ss_pred HHHHHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCC---------CCCHHHHHHHHHcCCEEEEeCC
Q 024252 3 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---------SMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 3 ~~a~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~---------~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++|.+.| + ...||.+|+|.++..++-+. .|++.++|... ..++..++.++..|.+|..-..
T Consensus 26 ~rA~Elg-i---~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH 95 (190)
T d1vp8a_ 26 ERAKELG-I---KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSH 95 (190)
T ss_dssp HHHHHHT-C---CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHcC-C---CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEEecc
Confidence 4555555 2 23455556799998777665 38888777642 3478899999999999987654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.93 E-value=3.2 Score=31.84 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=52.5
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 87 (270)
|.|+ |+..|||-+++.-|+++|..-.+.|.++++.-.. . .+.+..+..+...+.++-. +.++..+...+..++.
T Consensus 1 g~l~-GK~alITGas~GIG~aia~~la~~G~~V~~~~~~-~--~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 1 GLFA-GKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-P--EGKEVAEAIGGAFFQVDLE-DERERVRFVEEAAYAL 74 (248)
T ss_dssp CTTT-TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-T--THHHHHHHHTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CccC-CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-H--HHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHhc
Confidence 3443 6778999999999999999999999987665443 2 3455677889998888753 4455555555555543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.87 E-value=3 Score=32.21 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH----HHHHcC--CEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRM----VLLAFG--AELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~----~~~~~G--a~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|+..|||-.++--|.++|....+.|.++++.-.. ..+++ .++..| .+++.+.-+ .+.++..+...+..++
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~---~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCART---VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 4668999999999999999999999987666432 33333 355544 566654321 1233333444444444
Q ss_pred C
Q 024252 87 T 87 (270)
Q Consensus 87 ~ 87 (270)
.
T Consensus 87 ~ 87 (257)
T d1xg5a_ 87 H 87 (257)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.14 E-value=1 Score=32.66 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHcCCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 024252 6 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 66 (270)
Q Consensus 6 ~~~g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 66 (270)
.+.++++||.+ |+....|--|...+..++.+|...++++.. ++.|++..+.+|++-.+
T Consensus 21 ~~~~~vk~Gdt-VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~--~~~k~~~a~~~Ga~~~i 78 (176)
T d2jhfa2 21 VKVAKVTQGST-CAVFGLGGVGLSVIMGCKAAGAARIIGVDI--NKDKFAKAKEVGATECV 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCCcHHHHHHHHHHcCCceEEeecC--cHHHHHHHHHhCCeeEE
Confidence 46789999976 555566668888899999999876666654 45778888888875443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.80 E-value=1.6 Score=33.97 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=51.5
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDKT 87 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 87 (270)
+|++.|||..++.-|+++|....+.|.++++.-..... ....+.++..|.+++.+.-+ .+.++..+...+..++.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999997776554211 23355678888888655321 23444445555555554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=85.35 E-value=0.37 Score=30.58 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=36.9
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
++|-.-.+|..|+=++.+|+++|++++++-|...++... .-.+++..+-
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~ 50 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEI 50 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEee
Confidence 357778999999999999999999999999875544211 1236666654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=85.24 E-value=3.8 Score=31.63 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=44.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH----H--HHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV----L--LAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~----~--~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|+..|||-.++.-|+++|....+.|.++++.-.. ..+++. + +..+.+++.+..+ .+.++..+...+..++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~---~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS---SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999987665432 333222 2 2346677655321 2334444444555454
Q ss_pred C
Q 024252 87 T 87 (270)
Q Consensus 87 ~ 87 (270)
.
T Consensus 81 ~ 81 (258)
T d1iy8a_ 81 F 81 (258)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.64 E-value=1.9 Score=33.64 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|+..||+-.++.-|+++|....+.|.++++.-..... ....+.++..|.+++.+..+ .+.++..+...+..++
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999999998876554322 22355678889888766432 2334444455555444
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=84.34 E-value=3 Score=31.86 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=49.8
Q ss_pred CCCCCCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHh
Q 024252 9 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDK 86 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 86 (270)
|+|+ |+..||+..++.-|.++|......|.++++.-... ....+.++.+|.+++.+..+- +.++..+...+..++
T Consensus 1 g~l~-gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 1 GRLS-GKTILVTGAASGIGRAALDLFAREGASLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp CTTT-TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CcCC-CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4554 56789999999999999999999999887765432 223445677898887664322 333344444444443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.27 E-value=3.5 Score=31.96 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|+..|||-.++--|+++|....+.|.++++.-.
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r 38 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADI 38 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 567899999999999999999999998766543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.72 E-value=1 Score=30.94 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=37.8
Q ss_pred EEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 18 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 18 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++....|+.|+.+|-.-...|.+++++ +.++.+.+.++..|.+++.-+
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvi---d~d~~~~~~~~~~~~~~~~gd 50 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAV---DINEEKVNAYASYATHAVIAN 50 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEE---ESCHHHHHHTTTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEe---cCcHHHHHHHHHhCCcceeee
Confidence 566688999999999999999998887 345677777777777666544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.61 E-value=4.6 Score=30.84 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=50.4
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|+..|||-+++.-|+++|....+.|.++++.-.. ........++.+|.+++.+..+ .+.++..+...+..++
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~-~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLV-PAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-CCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-chHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999987766443 3455566788899887765432 2334444444444444
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.52 E-value=6.3 Score=30.29 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=37.5
Q ss_pred CCCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 024252 13 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 68 (270)
Q Consensus 13 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~ 68 (270)
+|+..|||-.++.-|+++|....+.|.++++.-..... ......++..+.+++.+.
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~ 63 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSV 63 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEe
Confidence 36778999999999999999999999987665432111 112334455666665443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=83.52 E-value=5.2 Score=30.71 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 57 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~ 57 (270)
|+..|||-+++--|.++|..-.+.|.+++++.........+..+
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~ 48 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL 48 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHH
Confidence 56788999999899999999999999998887765555544443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.47 E-value=2.2 Score=32.93 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDKT 87 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~--~k~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~ 87 (270)
|+..|||..++--|.++|....+.|.++++....+... .....++.+|.+++.+..+- +.++..+...+..++.
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 67789999999999999999999999988766553322 23556788999887665422 3444445455555554
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=83.12 E-value=3.1 Score=32.23 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=49.5
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 86 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--~~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 86 (270)
|+..|||-.++--|+++|....+.|.++++.-..... ....+.++.+|.+++.+..+ .+.++..+...+..++
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5677899899999999999999999987776554321 23456678899998876432 2334444444444444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=82.30 E-value=2.6 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=40.6
Q ss_pred EEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 024252 17 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 68 (270)
Q Consensus 17 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~ 68 (270)
++..-.+||.|.++|...++.|.+++++.+ ++.+.+.++..|......+
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~~~ 51 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDI---DAQRIKEIQDRGAIIAEGP 51 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHHTSEEEESS
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCCchhhh
Confidence 578889999999999999999999998854 5678888888887665443
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=81.19 E-value=2.8 Score=33.84 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=44.1
Q ss_pred CcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 024252 15 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 69 (270)
Q Consensus 15 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 69 (270)
.+..++.+||..|..+|+.+-.++-.-.|++|..+.......+...|++.++++-
T Consensus 46 ~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~ 100 (376)
T d1mdoa_ 46 NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDV 100 (376)
T ss_dssp CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecc
Confidence 4568888999888777776633333458889998999999999999999999875
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=80.82 E-value=3.8 Score=31.55 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCCCCCCcEEEeeCCcH--HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEE--eCCCCChHHHHHHHHHHH
Q 024252 9 GLIRPGESVLIEPTSGN--TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL--TDPARGMKGAVQKAEEIR 84 (270)
Q Consensus 9 g~l~~g~~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~--~~~~~~~~~~~~~a~~~~ 84 (270)
|.|+ |++.|||-.+|+ -|.++|....+.|.++++.-.......+++.+...|..... .+- .+..+..+...+..
T Consensus 1 g~L~-gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 1 GFLK-GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDV-SKEEHFKSLYNSVK 78 (274)
T ss_dssp CTTT-TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCT-TCHHHHHHHHHHHH
T ss_pred CcCC-CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecc-cchhhHHHHHHHHH
Confidence 3454 667788876675 78899999999999988877655555566666555544333 333 23333344444444
Q ss_pred HhC
Q 024252 85 DKT 87 (270)
Q Consensus 85 ~~~ 87 (270)
+..
T Consensus 79 ~~~ 81 (274)
T d2pd4a1 79 KDL 81 (274)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=5.5 Score=30.47 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=28.0
Q ss_pred CCcEEEeeCCcHHHHHHHHHHHHcCCcEEEEeC
Q 024252 14 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 46 (270)
Q Consensus 14 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p 46 (270)
|+..|||-.++--|+++|....+.|.++++.-.
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r 35 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDW 35 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 567899999999999999999999998776543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=80.02 E-value=5.4 Score=29.65 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=34.4
Q ss_pred cEEEeeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 024252 16 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 64 (270)
Q Consensus 16 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v 64 (270)
++|+....||-|..+|......|.+++++ +.+..++.....+|++.
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~---d~d~~~~~~~~~~g~~~ 73 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVA---DTDTERVAHAVALGHTA 73 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEe---cchHHHHHHHHhhcccc
Confidence 46899999999999999999999887654 33455555555555543
|