Citrus Sinensis ID: 024263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcc
Coil and Loop (DISEMBL)
MENVLEGAASVYtmadgslgdmfggflysaGQQANEAVLGQLSALSFTSLAVIFGAglvtslspctlsvlpltlgyigafgsgksraQIIGDSIAFSLGLATTLALLGvgasfagkaygqigtglplAASGLAIVMGLNLLEIIELqlpsffdnfdpraaaanfpSSVQAYLAGLTFAlaaspcstPVLATLLGYvatskdpliggtLLLSYTTGYVAPLLLAASFAGALQSLLSFRkfsswinpmsgalllggglytfldrlfpttmam
Flexible Loop (DISEMBL)
MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Low Complexity Region (SEG)
MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSlglattlallgVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered region (IsUnstruct)
********ASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFP*****
Disordered Region (DISOPRED)
*******AASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF****************VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISEMBL)
MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISPRO)
*ENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q2QY07	362	Cytochrome c-type biogene	yes	no	0.951	0.709	0.833	1e-120
Q2RAR6	367	Cytochrome c-type biogene	yes	no	0.951	0.700	0.833	1e-120
Q9M5P3	354	Cytochrome c-type biogene	yes	no	0.988	0.754	0.861	1e-114
P51364	240	Putative cytochrome c-typ	N/A	no	0.855	0.962	0.303	9e-28
Q1XDC3	224	Putative cytochrome c-typ	N/A	no	0.748	0.901	0.317	8e-26
Q9JYM0	601	Thiol:disulfide interchan	yes	no	0.733	0.329	0.3	8e-11
Q9JTL9	601	Thiol:disulfide interchan	yes	no	0.733	0.329	0.290	4e-10
P44202	213	Putative cytochrome c-typ	yes	no	0.633	0.802	0.265	3e-09
Q8XV41	608	Thiol:disulfide interchan	yes	no	0.729	0.324	0.302	4e-09
Q7MGV6	598	Thiol:disulfide interchan	yes	no	0.729	0.329	0.306	7e-09

>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 14  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 73
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 105 LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 164

Query: 74  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 133
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 165 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 224

Query: 134 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 193
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 225 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 284

Query: 194 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 253
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 285 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 344

Query: 254 GGLYTFLDRLFP-TTMAM 270
           GG+YT LDRLFP T+M M
Sbjct: 345 GGVYTLLDRLFPATSMVM 362

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 14  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 73
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 110 LADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 169

Query: 74  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 133
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 170 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 229

Query: 134 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 193
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 230 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 289

Query: 194 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 253
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 290 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 349

Query: 254 GGLYTFLDRLFP-TTMAM 270
           GG+YT LDRLFP T+M M
Sbjct: 350 GGVYTLLDRLFPATSMVM 367

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/268 (86%), Positives = 250/268 (93%), Gaps = 1/268 (0%)

Query: 4   VLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLS 63
           VL+ A S+Y +A+GSLGD  G FLYSA QQANEAV  QLSALS TSLAVIFGAGLVTSLS
Sbjct: 87  VLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTSLAVIFGAGLVTSLS 146

Query: 64  PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGT 123
           PCTLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+ ASFAGKAYGQIG 
Sbjct: 147 PCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGIVASFAGKAYGQIGQ 206

Query: 124 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASP 183
           GLP+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASP
Sbjct: 207 GLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASP 266

Query: 184 CSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 243
           CSTPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGALQSLLS RK S+WI
Sbjct: 267 CSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWI 326

Query: 244 NPMSGALLLGGGLYTFLDRLFP-TTMAM 270
           NP+SGALLLGGGLYTFLDRLFP  TM M
Sbjct: 327 NPISGALLLGGGLYTFLDRLFPAATMVM 354

Required for the transfer of reducing equivalents from stroma to thylakoid lumen. Involved in the biogenesis of the plastid cytochrome b6f complex by probably transferring reducing equivalents from stromal m-type thioredoxin (Trx-m) to the lumenal thioredoxin HCF164.

Arabidopsis thaliana (taxid: 3702)

>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 6/237 (2%)

Query: 27  LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 86
           LY++    N   L QL+ ++  S + +F +GL TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 87  AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 146
              + +   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + I MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 147 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 206
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +  IG 
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180

Query: 207 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 263
             +L Y+ GY+ P+++ + F+    +  S    ++   P SG +LL  G ++    +
Sbjct: 181 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237

Could be involved in cytochrome c synthesis.

Porphyra purpurea (taxid: 2787)

>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra yezoensis PE=3 SV=1

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 26  FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 85
           F+Y++    N   L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 86  RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 145
                 +   F LG  ++   LG+ A+   K Y Q   G+P  ++ + I MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 146 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 205
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++    G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179

Query: 206 GTLLLSYTTGYVAPLLLAASFAGALQSL 233
              +L Y+ GY+ P+++ + F+ +   L
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207

Could be involved in cytochrome c synthesis.

Porphyra yezoensis (taxid: 2788)

>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup B (strain MC58) GN=dsbD PE=1 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 49  SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 107
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GLA T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLV 248

Query: 108 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 160
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 161 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 220
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 221 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 257
           +   +F G +       K   W+N +    G +LL   +Y
Sbjct: 365 IAIGTFGGHI-----LPKAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3 SV=2

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 49  SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 107
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GL+ T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLV 248

Query: 108 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 160
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 161 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 220
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 221 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 257
           +   +F G +       +   W+N +    G +LL   +Y
Sbjct: 365 IAIGTFGGHI-----LPRAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1454 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 50  LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 109
           +  +F AGL + LSPC   ++P+   Y G    G  +     ++  F LGL+ T   LG 
Sbjct: 8   IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61

Query: 110 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 169
              F G       T   + A  + I++G++ L I ++ L       + + +  +  ++++
Sbjct: 62  SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117

Query: 170 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 229
           A++ GLTF+L  +PC  P+LA++L         L G +++  Y  G   P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177

Query: 230 L 230
           L
Sbjct: 178 L 178

Could be involved in cytochrome c synthesis.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q8XV41|DSBD_RALSO Thiol:disulfide interchange protein DsbD OS=Ralstonia solanacearum (strain GMI1000) GN=dsbD PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 18/215 (8%)

Query: 64  PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-YGQIG 122
           PC L +LP+    +   G   +R +    S+A+ LG+A     +GV A  AG+     + 
Sbjct: 201 PCVLPMLPILSAIV--VGEHATRMRAAAVSVAYVLGMAVVYTAVGVAAGLAGQGLQAALQ 258

Query: 123 TGLPLAA-SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ---AYLAGLTFA 178
               L A + L +V+ L +  + ELQLP+ + +   +A+  N  S  Q   A + G   A
Sbjct: 259 NAWVLGAFAALMVVLSLAMFGLYELQLPAAWRHRLTQAS--NRLSGGQVAGAAVMGALSA 316

Query: 179 LAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRK 238
           L  SPC TP LA  L Y+A + + ++GG  L S + G   PL+L    AG L       +
Sbjct: 317 LIVSPCVTPALAGALAYIAQTGNAMVGGAALFSMSIGMGVPLVLVGVGAGNL-----LPR 371

Query: 239 FSSWI---NPMSGALLLGGGLYTFLDRLFPTTMAM 270
              W+     + G +LLG  L+  +  + P  +AM
Sbjct: 372 AGYWLVVTKAIFGFILLGVALW-IVQPVLPAWLAM 405

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7MGV6|DSBD_VIBVY Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus (strain YJ016) GN=dsbD PE=3 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 55  GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 113
           G GL  + +PC L + P+    +   GSGK S+ + +G S+ +  G+A T  LLG+  + 
Sbjct: 204 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 259

Query: 114 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 166
           AG  + Q     P    GL+I+   + L++  +  LQLPS    + +N   +       S
Sbjct: 260 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 315

Query: 167 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226
           S   +  G    L  SPC+T  L+  L YVA S D L GG  L +   G   PL+L A F
Sbjct: 316 STGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 375

Query: 227 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 265
              L       K   W++ +    G +LL   ++  L+R+ P
Sbjct: 376 GNKL-----LPKAGGWMDHVKTLFGFVLLAAPIF-LLERILP 411

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
225461322	358	PREDICTED: cytochrome c-type biogenesis	1.0	0.754	0.877	1e-130
356517207	344	PREDICTED: cytochrome c-type biogenesis	0.981	0.770	0.898	1e-123
358249182	344	cytochrome c-type biogenesis ccda-like c	0.981	0.770	0.894	1e-123
224122910	265	predicted protein [Populus trichocarpa]	0.981	1.0	0.901	1e-123
255646784	340	unknown [Glycine max]	0.981	0.779	0.894	1e-122
255580440	350	Thiol:disulfide interchange protein dsbD	0.981	0.757	0.871	1e-120
27464259	345	chloroplast biogenesis protein [Lotus ja	0.981	0.768	0.879	1e-120
449463144	362	PREDICTED: cytochrome c-type biogenesis	1.0	0.745	0.881	1e-119
122206055	362	RecName: Full=Cytochrome c-type biogenes	0.951	0.709	0.833	1e-118
122208139	367	RecName: Full=Cytochrome c-type biogenes	0.951	0.700	0.833	1e-118

>gi|225461322|ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Vitis vinifera] gi|302143076|emb|CBI20371.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/270 (87%), Positives = 258/270 (95%)

Query: 1   MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVT 60
           ++++LEGA SVYT+ADGS+GD FGGFLYSAGQQAN AV  QLSALSFTSLAVIFGAGLVT
Sbjct: 89  IKDILEGATSVYTLADGSIGDWFGGFLYSAGQQANAAVQDQLSALSFTSLAVIFGAGLVT 148

Query: 61  SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 120
           SLSPCTLSVLPLTLGYIGAFGSGK RA++IG+S+AFSLGLATTLA+LGV ASFAGKAYGQ
Sbjct: 149 SLSPCTLSVLPLTLGYIGAFGSGKGRAEVIGNSVAFSLGLATTLAILGVAASFAGKAYGQ 208

Query: 121 IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALA 180
           IG GLPLAASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN PSSVQAYLAGLTFALA
Sbjct: 209 IGQGLPLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRSAAANLPSSVQAYLAGLTFALA 268

Query: 181 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFS 240
           ASPCSTPVLATLLGYVATSKDP+IGG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS
Sbjct: 269 ASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFS 328

Query: 241 SWINPMSGALLLGGGLYTFLDRLFPTTMAM 270
           +WINP SGALLLGGG+YT LDRLFPT+M M
Sbjct: 329 AWINPTSGALLLGGGIYTLLDRLFPTSMVM 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517207|ref|XP_003527280.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/265 (89%), Positives = 257/265 (96%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 80  EVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 139

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 199

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 259

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 319

Query: 246 MSGALLLGGGLYTFLDRLFPTTMAM 270
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 320 ISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249182|ref|NP_001240262.1| cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max] gi|32402380|gb|AAP81162.1| c-type cytochrome biogenesis protein [Glycine max] gi|255636862|gb|ACU18764.1| unknown [Glycine max]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/265 (89%), Positives = 256/265 (96%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E AAS+Y +ADGSL D FGGFLYSAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 80  EVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 139

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRA+++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 199

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 259

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 319

Query: 246 MSGALLLGGGLYTFLDRLFPTTMAM 270
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 320 ISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122910|ref|XP_002330394.1| predicted protein [Populus trichocarpa] gi|222871779|gb|EEF08910.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/265 (90%), Positives = 256/265 (96%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E AASVYT+ADGS+GD FGGFLYS+GQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 1   EEAASVYTLADGSIGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 60

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRA+I+GDSIAF+LGLATTLALLG+ ASFAGK YGQIG GL
Sbjct: 61  TLSVLPLTLGYIGAFGSGKSRAEIVGDSIAFALGLATTLALLGIAASFAGKTYGQIGQGL 120

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLA++MGLNLLE+IELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 121 PLAASGLAVIMGLNLLEVIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 180

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 181 TPVLATLLGYVAASKDPVVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINP 240

Query: 246 MSGALLLGGGLYTFLDRLFPTTMAM 270
           MSGALLLGGG+YTFLDRLFP TMAM
Sbjct: 241 MSGALLLGGGVYTFLDRLFPPTMAM 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646784|gb|ACU23864.1| unknown [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/265 (89%), Positives = 256/265 (96%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 76  EVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 135

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 136 TLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 195

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 196 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 255

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP+I G+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 256 TPVLATLLGYVAASKDPVIRGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 315

Query: 246 MSGALLLGGGLYTFLDRLFPTTMAM 270
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 316 ISGAMLLGGGVYTFLDRLFPVTMVM 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580440|ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis] gi|223529374|gb|EEF31339.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/265 (87%), Positives = 250/265 (94%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E    +YT+ADG +GD  G  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 86  EATIYMYTLADGGIGDWLGRLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 145

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRA+++ DSIAF+LGLATTLALLG+GASFAGKAYGQIG GL
Sbjct: 146 TLSVLPLTLGYIGAFGSGKSRAEVVADSIAFALGLATTLALLGIGASFAGKAYGQIGQGL 205

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLA++MGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 206 PLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 265

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 266 TPVLATLLGYVAASKDPIVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINP 325

Query: 246 MSGALLLGGGLYTFLDRLFPTTMAM 270
           MSGALLLGGG+YTFLDRLFP +M+M
Sbjct: 326 MSGALLLGGGVYTFLDRLFPVSMSM 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27464259|gb|AAO16018.1| chloroplast biogenesis protein [Lotus japonicus]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/266 (87%), Positives = 253/266 (95%), Gaps = 1/266 (0%)

Query: 6   EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 65
           E AAS Y +ADGS+ D FGG LYSAGQQANEAVL QLS+LSFTSLAVIFGAGLVTSLSPC
Sbjct: 80  EVAASFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAVIFGAGLVTSLSPC 139

Query: 66  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 125
           TLSVLPLTLGYIGAFGSGKSRA++IGDSIAFSLGLATTLALLGV ASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVIGDSIAFSLGLATTLALLGVAASFAGKAYGQIGQGL 199

Query: 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 185
           PLAASGLA++MGLNLLEIIELQLPSFFD+FDPR+ AAN PSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYLAGLTFALAASPCS 259

Query: 186 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGY+APLLLAASFAGALQSLLSFRK+S+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINP 319

Query: 246 MSGALLLGGGLYTFLDRLFP-TTMAM 270
           +SGA+LLGGG+YTFLD+LFP TTMAM
Sbjct: 320 ISGAMLLGGGVYTFLDKLFPATTMAM 345

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463144|ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus] gi|449528927|ref|XP_004171453.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/270 (88%), Positives = 259/270 (95%)

Query: 1   MENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVT 60
           ++++ EGAASVYT+ADG +GD FGG LYSAGQQAN AV  QLSALSFTSLAVIFGAG VT
Sbjct: 93  LKHMWEGAASVYTLADGGMGDWFGGILYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVT 152

Query: 61  SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 120
           SLSPCTLSVLPLTLGYIGAFGSGKS+A+++G+S+AFSLGLATTLALLG+GASFAGKAYGQ
Sbjct: 153 SLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLATTLALLGIGASFAGKAYGQ 212

Query: 121 IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALA 180
           IG GLPLAASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAANFPSSVQAYLAGLTFALA
Sbjct: 213 IGQGLPLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALA 272

Query: 181 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFS 240
           ASPCSTPVLATLLGYVATSKDP+IGG+LLL+YTTGYV PLLLAASFAGALQSLLSFRKFS
Sbjct: 273 ASPCSTPVLATLLGYVATSKDPIIGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFS 332

Query: 241 SWINPMSGALLLGGGLYTFLDRLFPTTMAM 270
           SWINP+SGALLLGGGLYTFLDRLFP TMAM
Sbjct: 333 SWINPISGALLLGGGLYTFLDRLFPVTMAM 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122206055|sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 2; AltName: Full=Cytochrome b6f biogenesis protein CCDA2; Flags: Precursor gi|77552967|gb|ABA95763.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 14  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 73
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 105 LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 164

Query: 74  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 133
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 165 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 224

Query: 134 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 193
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 225 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 284

Query: 194 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 253
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 285 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 344

Query: 254 GGLYTFLDRLFP-TTMAM 270
           GG+YT LDRLFP T+M M
Sbjct: 345 GGVYTLLDRLFPATSMVM 362

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122208139|sp|Q2RAR6.1|CCDA1_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 1; AltName: Full=Cytochrome b6f biogenesis protein CCDA1; Flags: Precursor gi|77548619|gb|ABA91416.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group] gi|215769034|dbj|BAH01263.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 14  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 73
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 110 LADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 169

Query: 74  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 133
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 170 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 229

Query: 134 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 193
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 230 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 289

Query: 194 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 253
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 290 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 349

Query: 254 GGLYTFLDRLFP-TTMAM 270
           GG+YT LDRLFP T+M M
Sbjct: 350 GGVYTLLDRLFPATSMVM 367

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TIGR_CMR|CHY_1095	395	CHY_1095 "thioredoxin domain s	0.844	0.577	0.319	2e-24
UNIPROTKB|Q748P3	228	dsbD "Thiol:disulfide intercha	0.777	0.921	0.303	2.9e-23
TIGR_CMR|GSU_2958	228	GSU_2958 "thiol:disulfide inte	0.777	0.921	0.303	2.9e-23
UNIPROTKB|Q5LUR2	245	soxV "Sulfur oxidation V prote	0.737	0.812	0.294	2e-17
TIGR_CMR|SPO_0991	245	SPO_0991 "sulfur oxidation V p	0.737	0.812	0.294	2e-17
TIGR_CMR|CBU_1723	630	CBU_1723 "thiol:disulfide inte	0.796	0.341	0.294	1.1e-11
UNIPROTKB|Q5LS73	250	ccdA "Cytochrome c-type biogen	0.722	0.78	0.306	2.4e-11
TIGR_CMR|SPO_1896	250	SPO_1896 "cytochrome c-type bi	0.722	0.78	0.306	2.4e-11
TIGR_CMR|CPS_0953	608	CPS_0953 "thiol:disulfide inte	0.777	0.345	0.254	5.4e-10
TIGR_CMR|SO_0696	610	SO_0696 "thiol:disulfide inter	0.670	0.296	0.284	1.3e-09

TIGR_CMR|CHY_1095 CHY_1095 "thioredoxin domain selenoprotein/cytochrome C biogenesis family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 75/235 (31%), Positives = 109/235 (46%)

Query:    29 SAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ 88
             S  Q   + + G L      +L V+F  G+ TS +PC L ++PL +GY G + +G+S A+
Sbjct:   167 SFAQTLADKLPGLLGDSKLLALFVVFLGGIATSFTPCILGMIPLIIGYTGGY-AGRSPAK 225

Query:    89 IIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQL 148
                 S+ F            VG    G                +AI+MG  ++    + L
Sbjct:   226 GFIYSLFFVLGLATTLTLLGVGIGVLGTFIKSRLFAFNFILGIVAILMGFAVMGFYTINL 285

Query:   149 PSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 208
             P       P      F S    YL GL F L+ASPC+TPVL  ++ Y      PL GG L
Sbjct:   286 PGL--KRMPVKGTGLFSS----YLMGLFFGLSASPCATPVLIVIVTYALAKASPLFGGAL 339

Query:   209 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 263
             L SY+ G+  PL+LA +F+  L  + S  ++   IN + G +L+  GLY    RL
Sbjct:   340 LFSYSFGHGLPLILAGTFSAFLGKITSLGRYGEIINYIFGGILVLYGLYLLFGRL 394

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q748P3 dsbD "Thiol:disulfide interchange protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:    47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 106
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   107 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 166
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   167 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   227 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 264
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2958 GSU_2958 "thiol:disulfide interchange protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:    47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 106
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   107 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 166
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   167 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   227 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 264
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LUR2 soxV "Sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:    50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 99
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   100 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 159
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   160 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 219
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   220 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 252
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|SPO_0991 SPO_0991 "sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:    50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 99
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   100 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 159
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   160 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 219
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   220 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 252
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|CBU_1723 CBU_1723 "thiol:disulfide interchange protein DsbD" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 180 (68.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 68/231 (29%), Positives = 99/231 (42%)

Query:    47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 106
             F  L   FG GL+ S +PC L ++P+  G I   G  K   +  G S+ +          
Sbjct:   221 FFVLLSFFGFGLLLSFTPCVLPMIPVLSGII--VGQQKYPKRAFGLSLMYVLGMAITYAI 278

Query:   107 XXVGASFAGKAYGQIGTGLPLAA---SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 163
               V   F G    Q     P      S L I M L+L  + +LQLP     +  R A A+
Sbjct:   279 AGVIFGFIGSTV-QAAFQNPWLIGLFSLLFIAMALSLFGLYDLQLPQ---RWQTRLAQAS 334

Query:   164 FPSSVQAYLA----GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 219
                    YL     G    L  SPC TP L  +LGY++ + +  +GG  L +   G  AP
Sbjct:   335 DRQKHGTYLGTALMGALSTLILSPCVTPALVGVLGYISHTGNASLGGVALFTMGLGMGAP 394

Query:   220 LLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 270
             LLL  +F+   + L     + + I  + G L+L   ++  L R+ P T+ M
Sbjct:   395 LLLLGAFSR--KWLPKAGPWMTVIKHILGVLMLAVAVW-LLARILPGTVTM 442

GO:0009055 "electron carrier activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q5LS73 ccdA "Cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:    57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 114
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   115 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 169
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   170 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 228
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   229 ALQSLLS-FRKFSSWINPMSGALLLGGGL 256
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SPO_1896 SPO_1896 "cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:    57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 114
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   115 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 169
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   170 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 228
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   229 ALQSLLS-FRKFSSWINPMSGALLLGGGL 256
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|CPS_0953 CPS_0953 "thiol:disulfide interchange protein DsbD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 167 (63.8 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 57/224 (25%), Positives = 96/224 (42%)

Query:    49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 108
             +L   F  GL+ S +PC   + P+  G I   G G +  +    S  +            
Sbjct:   196 TLIAFFVGGLLLSFTPCVFPMYPILTGIIVGQGEGLTTKKAFTLSFFYVQGMAITYTLLG 255

Query:   109 VGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFP 165
             V  + AG  +  +    P+   GL+I+   + L++  +  L LP+ + N     +     
Sbjct:   256 VVVAMAGAKFQAVFQH-PIVLIGLSILFIFLALSMFGVFNLALPASWQNKLNNVSNKQKG 314

Query:   166 SSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 224
              S+   L  G+   L ASPC+T  L   L Y++ + D ++G + L + + G   PLL+  
Sbjct:   315 GSITGVLMMGVISGLVASPCTTAPLTGALLYISQTGDVVLGASALYALSLGMGLPLLILG 374

Query:   225 SFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 265
             S  G L       K  +W+N +    G LLL   ++  L+R  P
Sbjct:   375 SSGGKL-----LPKAGAWMNIIKNIFGLLLLAVPVF-LLERFIP 412

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0047134 "protein-disulfide reductase activity" evidence=ISS

TIGR_CMR|SO_0696 SO_0696 "thiol:disulfide interchange protein DsbD" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 164 (62.8 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 53/186 (28%), Positives = 84/186 (45%)

Query:    49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 108
             +L + FG G+  +L+PC   + P+  G I   G   S A+    S+A+            
Sbjct:   200 TLVIFFGLGIGLALTPCVFPMYPILSGIIVGQGQKLSTAKAFTLSMAYVQGMAITYSILG 259

Query:   109 VGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFF-DNFDPRAAAANF 164
             +  + AG  Y Q     P     LAI   V+ L++  + +L+LPS F +  +  +     
Sbjct:   260 LVVASAGMKY-QAALQHPAVLVVLAILFFVLSLSMFGLYDLKLPSRFQEKMNSISNNQKG 318

Query:   165 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 224
              + +  +L G+   L ASPC+T  L+  L YVA + D L G   L   + G   PLL+  
Sbjct:   319 GNLIGVFLMGVISGLVASPCTTAPLSGALVYVAQTGDLLQGFLALYVLSMGMGVPLLIIG 378

Query:   225 SFAGAL 230
             +  G L
Sbjct:   379 TSGGKL 384

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QY07	CCDA2_ORYSJ	No assigned EC number	0.8333	0.9518	0.7099	yes	no
Q9M5P3	CCDA_ARATH	No assigned EC number	0.8619	0.9888	0.7542	yes	no
Q2RAR6	CCDA1_ORYSJ	No assigned EC number	0.8333	0.9518	0.7002	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam02683	206	pfam02683, DsbD, Cytochrome C biogenesis protein t	3e-36
COG0785	220	COG0785, CcdA, Cytochrome c biogenesis protein [Po	7e-28
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	3e-18
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	5e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04

>gnl|CDD|217183 pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region

 Score =  127 bits (322), Expect = 3e-36
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 53  IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 112
            F AGL++ LSPC L ++P  L YI     G  +  ++  ++ F LGL+     LG GA+
Sbjct: 1   AFLAGLLSFLSPCILPLIPAYLSYISGVSLGDRKQGVLLKALLFVLGLSIVFLSLGYGAA 60

Query: 113 FAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 172
           F G  +      L + A  + I+MGL+ L +  +                     + A+L
Sbjct: 61  FLGGLFRDYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRL--GHKKLKVEGPMLGAFL 118

Query: 173 AGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQS 232
            G+ FAL  +PC  P+LA++L   A+S   L+   LL+ Y  G   P LLA+ FAG+L  
Sbjct: 119 LGMLFALGWTPCIGPILASVLALAASSGSLLLAALLLVVYVLGLGIPFLLASLFAGSLLF 178

Query: 233 LLSFRKFSSWINPMSGALLLGGGLYTFL 260
           L   RK S WI   SG LL+  G+   L
Sbjct: 179 LRWLRKNSRWIRIASGVLLILIGILLLL 206

This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Length = 206

>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

 Score =  106 bits (266), Expect = 7e-28
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 43  SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT 102
           + +   S+ + F AGL++ LSPC L +LP  L Y+   GS  +R  ++  S+ F LG AT
Sbjct: 6   ALVGTVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAG-GSLGARKSVLLASLLFVLGFAT 64

Query: 103 TLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 162
              LLG+GAS  G         L   A  L I++GL  L ++ L L   F  F  +    
Sbjct: 65  VFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGK-- 122

Query: 163 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 222
              +++ A+L GL FAL  +PC  P+L ++L   A++   ++G  LL +Y  G   P LL
Sbjct: 123 -SVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAAYALGLALPFLL 181

Query: 223 AASFAGALQSLLS--FRKFSSWINPMSGALLLGGGLY 257
            A  +G      S   R+ S  I  + GALL+  GL 
Sbjct: 182 LALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLL 218

Length = 220

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 49  SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL--ATTLAL 106
           SL + F  GL+ + +PC L +LPL  G +   GS K  ++     ++F      A    L
Sbjct: 169 SLLLAFLGGLLLNFTPCVLPMLPLLSGIV--LGSAKRASKARAFGLSFVYVQGMALAYTL 226

Query: 107 LGVGASFAGKAYGQIGTGL--PLAASGLAIVM---GLNLLEIIELQLP-SFFDNFDPRAA 160
           LG+ A+ AG         L  P    GLA +     L++  + ELQLP S       ++ 
Sbjct: 227 LGLVAAAAG---LGWQAQLQQPWVLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSN 283

Query: 161 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 220
            A+  S V A+  G    L  SPC+ P LA  L Y+A S + L+GG  L +   G   PL
Sbjct: 284 RASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALLGGLALYALGLGMGLPL 343

Query: 221 LLAASFAGAL 230
           LL   F   L
Sbjct: 344 LLIGVFGNRL 353

Length = 569

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 30/215 (13%)

Query: 32  QQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIG 91
                     L++L ++ L   F  G+  + +PC L + P+  G +       S A+ + 
Sbjct: 152 PAPAGQATASLASLPWS-LLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALL 210

Query: 92  DSIAFSLGLATTLALLG-VGASFAGKAYGQIGTGLPLAA-----------SGLAIVMGLN 139
            S  +  G+A T  LLG V A+           GL   A           S L +++ L+
Sbjct: 211 LSFVYVQGMALTYTLLGLVVAAA----------GLQFQAALQHPYVLIGLSILFVLLALS 260

Query: 140 LLEIIELQLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGY 195
           +  +  LQLPS           R    +       ++ G    L  SPC+T  L+  L Y
Sbjct: 261 MFGLFTLQLPSSLQTRLTLLSNRQQGGSLGG---VFVMGAISGLICSPCTTAPLSGALLY 317

Query: 196 VATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 230
           +A S D L+GG  L     G   PL+L  +F   L
Sbjct: 318 IAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL 352

Length = 571

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 6/41 (14%)

Query: 69  VLPLTLGYI---GAFGSGKSRAQIIGDSIAFSLGLATTLAL 106
           V+P + G+    G  GSGKS    IGD+I F+LGL+++ A+
Sbjct: 18  VIPFSKGFTVISGPNGSGKSN---IGDAILFALGLSSSKAM 55

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	100.0
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	100.0
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	100.0
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.95
COG2836	232	Uncharacterized conserved protein [Function unknow	99.93
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	99.92
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	99.11
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	98.72
COG2215	303	ABC-type uncharacterized transport system, permeas	98.51
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	98.2
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	98.14
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	97.98
PRK10958	212	leucine export protein LeuE; Provisional	97.85
PRK09304	207	arginine exporter protein; Provisional	97.73
PRK10229	206	threonine efflux system; Provisional	97.68
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	97.63
PF01914	203	MarC: MarC family integral membrane protein; Inter	97.5
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	97.45
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	97.43
PRK10995	221	inner membrane protein; Provisional	97.4
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	97.38
PRK11111	214	hypothetical protein; Provisional	97.25
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	97.2
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	96.95
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	96.68
PF09948	191	DUF2182: Predicted metal-binding integral membrane	96.66
PRK10739	197	putative antibiotic transporter; Provisional	96.66
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.43
TIGR00948	177	2a75 L-lysine exporter.	96.36
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	96.17
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	95.94
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	94.38
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	89.49
COG5486	283	Predicted metal-binding integral membrane protein	89.27
COG2215	303	ABC-type uncharacterized transport system, permeas	87.92
TIGR00704	307	NaPi_cotrn_rel Na/Pi-cotransporter. This model des	86.14
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	86.03
TIGR00802	280	nico high-affinity nickel-transporter, HoxN/HupN/N	83.52
PRK11469	188	hypothetical protein; Provisional	83.22
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	80.59

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=100.00  E-value=3.3e-34  Score=250.20  Aligned_cols=206  Identities=41%  Similarity=0.635  Sum_probs=174.1

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHH
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA  129 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~---~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~  129 (270)
                      +|.+|+++++|||++|++|++++++.+++++++|++   .+..++.|.+|+.++|..+|...+.+|+.+++..+++..+.
T Consensus         1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~   80 (211)
T PF02683_consen    1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA   80 (211)
T ss_pred             ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999876543222222   47889999999999999999999999999987778899999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHH
Q 024263          130 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL  209 (270)
Q Consensus       130 G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l  209 (270)
                      |++++++|+.+++.++.+.+...+.. .+.+++++++..++|.+|+.++++|+||++|++.+++.++++++|+..+..++
T Consensus        81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll  159 (211)
T PF02683_consen   81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL  159 (211)
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence            99999999999988764332221111 11112334557899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263          210 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTF  259 (270)
Q Consensus       210 ~~fglG~~lPlll~~~~~~~~~-~~~~~~~~~~~i~~i~G~lli~~Gi~~~  259 (270)
                      ++|++|+++|+++++...++.+ +.++.+|+++++|++.|+++++.|+|++
T Consensus       160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888764 5667889999999999999999999976

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-32  Score=236.19  Aligned_cols=207  Identities=34%  Similarity=0.513  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHH
Q 024263           48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL  127 (270)
Q Consensus        48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~  127 (270)
                      .++..+|.+|+++++|||++|++|.++++....+ .++|++.+.+.+.|.+|..++|..+|..+..+|+.+...++++++
T Consensus        11 ~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~   89 (220)
T COG0785          11 VSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRY   89 (220)
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588899999999999999999999999987542 233778889999999999999999999999999999887778999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHH
Q 024263          128 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT  207 (270)
Q Consensus       128 ~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~  207 (270)
                      +.|++++++|+.+++..+.+.+....|.+.+   .+..+..++|.+|+.++++|+||.+|++.+++.+++.+++...|..
T Consensus        90 i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~  166 (220)
T COG0785          90 IAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGAL  166 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHH
Confidence            9999999999998888776555443333211   2356789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024263          208 LLLSYTTGYVAPLLLAASFAGALQ--SLLSFRKFSSWINPMSGALLLGGGLYT  258 (270)
Q Consensus       208 ~l~~fglG~~lPlll~~~~~~~~~--~~~~~~~~~~~i~~i~G~lli~~Gi~~  258 (270)
                      +|++|++|.++|+++++.+.++..  +.++++|+.++++++.|++++.+|+++
T Consensus       167 ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         167 LLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998874  477889999999999999999999985

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=100.00  E-value=2.1e-32  Score=270.14  Aligned_cols=220  Identities=26%  Similarity=0.359  Sum_probs=180.4

Q ss_pred             chHHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--h
Q 024263           45 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G  122 (270)
Q Consensus        45 ~~~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~--~  122 (270)
                      +.+..++.+|++|++++++||++||+|++.+++.+++++++|++.+.+++.|++|++++|+++|++++.+|..++..  +
T Consensus       164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~  243 (571)
T PRK00293        164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH  243 (571)
T ss_pred             cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44678999999999999999999999999988876433245667888999999999999999999999999877532  3


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhcccccc-cCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccC
Q 024263          123 TGLPLAASGLAIVMGLNLLEIIELQLPSFFD-NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD  201 (270)
Q Consensus       123 ~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~-~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs  201 (270)
                      .++.+..+++++++|+.|+|.+++++|.... +.++..++.+.++..++|++|++++++++||++|++++++.+++.++|
T Consensus       244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~  323 (571)
T PRK00293        244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD  323 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence            4677788899999999999998877665432 222222223446789999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 024263          202 PLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT  267 (270)
Q Consensus       202 ~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~~~~~  267 (270)
                      +..|.+.|++||+|+++|+++++.+.++.  ..+..++.++++++.|++++++|+|++ .+++|.+
T Consensus       324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~--lpk~g~wm~~~k~~~G~~ll~~~~~ll-~~~~~~~  386 (571)
T PRK00293        324 LLLGGLTLYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVFLL-ERVLPGV  386 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCccHHHHHHHHHHHHHHHHHHHHH-HHHhhHH
Confidence            99999999999999999999999886554  123345556788899999999999955 5777764

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.95  E-value=5e-27  Score=226.48  Aligned_cols=216  Identities=32%  Similarity=0.499  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-Hhhc-h
Q 024263           47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-QIGT-G  124 (270)
Q Consensus        47 ~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~-~~~~-~  124 (270)
                      ..+++.+|+.|++-.|+||++||+|+..+.+.+..++.+++|.......|..|+.++|+++|..++..|..++ +.|+ +
T Consensus       167 ~~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~  246 (569)
T COG4232         167 KWSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPW  246 (569)
T ss_pred             CHHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccH
Confidence            3558999999999999999999999999888765334455566767778888899999999999999887765 3343 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccc-CchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263          125 LPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  203 (270)
Q Consensus       125 ~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~-~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~  203 (270)
                      +-....++++++++.|+|.+++++|...+. +...+++.+.++..|+|.+|++.+++.+||++|.+.+++.++++++|..
T Consensus       247 vl~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~  326 (569)
T COG4232         247 VLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNAL  326 (569)
T ss_pred             HHHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHH
Confidence            555677789999999999999999886432 3333333444558999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhcCccc
Q 024263          204 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN---PMSGALLLGGGLYTFLDRLFPTTM  268 (270)
Q Consensus       204 ~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~---~i~G~lli~~Gi~~~~~~~~~~~~  268 (270)
                      .|...+.++++|+++|+++++++.+++     ++|.++|++   .+.|++|++..+|+ +.|++|...
T Consensus       327 ~g~~~l~al~LGMg~Plllv~~f~~~~-----LPk~G~WM~~vK~~fGFvlLa~aiwL-l~~~~~e~~  388 (569)
T COG4232         327 LGGLALYALGLGMGLPLLLIGVFGNRL-----LPKPGPWMNTVKQAFGFVLLATAIWL-LWRVLPEVG  388 (569)
T ss_pred             HHHHHHHHHHHhcccchhhheeccccc-----CCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhhhH
Confidence            999999999999999999999887443     566666655   66999999999994 477777653

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=9.1e-24  Score=182.54  Aligned_cols=201  Identities=24%  Similarity=0.330  Sum_probs=154.3

Q ss_pred             HHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hhchHH
Q 024263           50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGLP  126 (270)
Q Consensus        50 ~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~---~~~~~~  126 (270)
                      ++..+++|++++ .||..+|-|+..++...+.++++++ .++.++.|++||++||+++|++.+.+|..+.+   .+....
T Consensus         6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~   83 (232)
T COG2836           6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF   83 (232)
T ss_pred             HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444889999888 5999999999998876543223322 38889999999999999999999999977654   355789


Q ss_pred             HHHHHHHHHHHHHHHH---Hhh--hhcccccccCchhh---hhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh
Q 024263          127 LAASGLAIVMGLNLLE---IIE--LQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT  198 (270)
Q Consensus       127 ~~~G~lli~~Gl~~lg---~~~--~~~p~~~~~~~~~~---~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~  198 (270)
                      +++|++++++|+.++.   ..+  .+.|...+++.+..   +..+.++.++++++|+.+|+  .||.  ++++.+++|..
T Consensus        84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~~  159 (232)
T COG2836          84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYALS  159 (232)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHHH
Confidence            9999999999999952   222  12333221111111   11344568899999999995  9995  78899999999


Q ss_pred             ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 024263          199 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD  261 (270)
Q Consensus       199 ~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~  261 (270)
                      ++|+.+|+++|++||+||..+++..+.+.++++     +..+++.+|..|.++.+.|+|.++.
T Consensus       160 tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s-----~~~r~~~~rl~~gl~~v~g~~~l~~  217 (232)
T COG2836         160 TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLS-----KSSRKRLNRLSGGLMVVVGLIGLWK  217 (232)
T ss_pred             cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999888888998888875     3345678888888888888776653

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=99.92  E-value=3.9e-24  Score=185.11  Aligned_cols=189  Identities=28%  Similarity=0.404  Sum_probs=138.0

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh------chHH
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP  126 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~------~~~~  126 (270)
                      +|+.|+++++ ||..+|.|+..++..+   ++ | |.+ ..+.|++||+++|+++|++++.+|+.++...      ....
T Consensus         2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~---~~-~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~   74 (199)
T PF13386_consen    2 AFLLGLLGSL-HCIGMCGPIALALSLS---QP-K-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG   74 (199)
T ss_pred             HHHHHHHHhh-hHHHhHHHHHHHHhcc---Cc-c-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            6899999999 9999999999988543   12 2 234 5899999999999999999999999886432      2334


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hcccccccCchhhhh-cCC-CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263          127 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  203 (270)
Q Consensus       127 ~~~G~lli~~Gl~~lg~~~~-~~p~~~~~~~~~~~~-~~~-~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~  203 (270)
                      ++.+.+++++|+.++...+. +.+...+...++.++ .++ ++..++|.+|+++|+  .||  |+++.++..++.++|+.
T Consensus        75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~  150 (199)
T PF13386_consen   75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL  150 (199)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence            55555566666666632111 111111111111111 122 678899999999998  899  45667788888999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024263          204 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY  257 (270)
Q Consensus       204 ~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~  257 (270)
                      +|+++|++|++||..|++.++...++.+     ++.+++..|+.|+++++.|+|
T Consensus       151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~-----~~~~~~~~r~~g~~~i~~G~~  199 (199)
T PF13386_consen  151 YGALLMLAFGLGTLPALLLAGLLAGKLS-----RRLRRRLLRLAGVLLIILGIY  199 (199)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999888888887777664     234466777999999999987

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=99.11  E-value=1.2e-07  Score=86.04  Aligned_cols=221  Identities=17%  Similarity=0.196  Sum_probs=140.8

Q ss_pred             hHHHHHHhhhccchHHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024263           33 QANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS  112 (270)
Q Consensus        33 ~~~~~~~~~l~~~~~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~  112 (270)
                      +..|+.+|+   +-+.-+..+|+.|+.=++.|=-.-.  +..+|+.++  +++.++.+..++.-.++=..+-.+++.+.-
T Consensus         3 ~~~~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGKa--vi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~   75 (279)
T PRK10019          3 EFTTLLQQG---NAWFFIPSAILLGALHGLEPGHSKT--MMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGM   75 (279)
T ss_pred             cHHHHHHcc---hHHHHHHHHHHHHHHHhcCCCcchH--HHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344565555   5577788899999999998876532  234666542  345556677777767776655555555443


Q ss_pred             HHhHHHHH--hhchHHHHHHHHHHHHHHHHHHH-hhhh--c---cc--cccc--------------------------C-
Q 024263          113 FAGKAYGQ--IGTGLPLAASGLAIVMGLNLLEI-IELQ--L---PS--FFDN--------------------------F-  155 (270)
Q Consensus       113 ~~G~~~~~--~~~~~~~~~G~lli~~Gl~~lg~-~~~~--~---p~--~~~~--------------------------~-  155 (270)
                      .+.+.+..  ..+++..+.+++++.+|+.++-. .+.+  .   +.  ..+.                          . 
T Consensus        76 ~l~~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~  155 (279)
T PRK10019         76 YLSRRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQ  155 (279)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCC
Confidence            44555442  45678999999999999999832 1111  0   00  0000                          0 


Q ss_pred             chh--------hhh--cCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHH
Q 024263          156 DPR--------AAA--ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS  225 (270)
Q Consensus       156 ~~~--------~~~--~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~  225 (270)
                      ++.        +.+  .+..+..+.+.+|+.-|+  .||++.++.  +..+.+.+.+..|+++.++|++|+++.+..++.
T Consensus       156 ~~~~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgl  231 (279)
T PRK10019        156 DAHERAHANDIKRRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGV  231 (279)
T ss_pred             CHHHhhccchhhhhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000        000  000122233577888886  999876643  444556789999999999999999999998887


Q ss_pred             HHH-HHHH-HHhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhc
Q 024263          226 FAG-ALQS-LLSFRKFSSWIN---PMSGALLLGGGLYTFLDRLF  264 (270)
Q Consensus       226 ~~~-~~~~-~~~~~~~~~~i~---~i~G~lli~~Gi~~~~~~~~  264 (270)
                      ... ..++ .++..+..++++   .++|++.+++|+|+.++.|.
T Consensus       232 l~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~~  275 (279)
T PRK10019        232 GAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGFM  275 (279)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            763 3332 223333445555   88999999999999987764

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=98.72  E-value=3.3e-06  Score=73.90  Aligned_cols=192  Identities=20%  Similarity=0.193  Sum_probs=120.0

Q ss_pred             HHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H-------hhchHHH
Q 024263           56 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-Q-------IGTGLPL  127 (270)
Q Consensus        56 ~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~-~-------~~~~~~~  127 (270)
                      .++..++||=.+...-.   .+.+   ++.    .++...|.+|...+|...|.+.-....... .       ...++.+
T Consensus         4 LAl~~a~sP~~i~~~vl---ll~~---~r~----~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (214)
T PF11139_consen    4 LALVDALSPLPIVIAVL---LLSR---PRP----RRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQL   73 (214)
T ss_pred             HHHHHHhChHHHHHHHH---HhcC---CCc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHH
Confidence            46667777765443321   1211   222    245789999999999999998877666553 1       1234577


Q ss_pred             HHHHHHHHHHHHHHHHhh-hhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHH
Q 024263          128 AASGLAIVMGLNLLEIIE-LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG  206 (270)
Q Consensus       128 ~~G~lli~~Gl~~lg~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~  206 (270)
                      +.|++++++|.......+ .+-|+.   ..+...+.+..+..+++.+|+..++...+...|++.+.......+-++..-.
T Consensus        74 ~lGv~ll~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~  150 (214)
T PF11139_consen   74 VLGVLLLLLAVRVWRRRPRPDPPSR---PPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQV  150 (214)
T ss_pred             HHHHHHHHHHHHHhhcccccCCCCC---chhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            788888888887663220 001111   1111112234556788999999999888887666666555556666888888


Q ss_pred             HHHHHHHhhhHHHHHHHHH----HHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHhh
Q 024263          207 TLLLSYTTGYVAPLLLAAS----FAGALQSLLSFRKFSSW----INPMSGALLLGGGLYTFLDR  262 (270)
Q Consensus       207 ~~l~~fglG~~lPlll~~~----~~~~~~~~~~~~~~~~~----i~~i~G~lli~~Gi~~~~~~  262 (270)
                      .....|.+-+..|..+...    ..++.+.  ...|.++|    -+.+.++++.+.|++++.+.
T Consensus       151 ~~l~~y~~i~~~~~~~pll~~~~~~~r~~~--~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G  212 (214)
T PF11139_consen  151 VALVVYCLIASLPALLPLLAYLVAPERAEP--WLERLRSWLRRHSRQILAVILLIVGALLLGDG  212 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence            9999999999877765332    2223321  22333333    44678999999999987653

Currently no function for this family is known.

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=98.51  E-value=0.00035  Score=63.63  Aligned_cols=206  Identities=23%  Similarity=0.235  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hHH--HHHh
Q 024263           47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFA-GKA--YGQI  121 (270)
Q Consensus        47 ~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~--f~lG~~~sy~~lG~l~~~~-G~~--~~~~  121 (270)
                      |..+.++|+-|++=++.|=-.=.+  ..+|+.+.  +.+-|+.+..++.  ..=|.. .+.+++++.+.. +..  +.+.
T Consensus        55 w~li~~SflyGvlHAlgPGHgKav--iasylia~--~~~lk~~ilLsf~~sllqG~~-Av~l~~~~~~v~~~~s~~~~~s  129 (303)
T COG2215          55 WTLIPLSFLYGVLHALGPGHGKAV--IATYLIAH--KATLKRAILLSFLASLLQGLT-AVVLLLAFLGVLRLSSITFALS  129 (303)
T ss_pred             HHHHHHHHHHHHHhccCCCcchHH--HHHHHHhc--ccchhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhhHHhhh
Confidence            578889999999999999875322  23566542  2333333333322  222222 233333333322 232  3345


Q ss_pred             hchHHHHHHHHHHHHHHHHHHH--hhh--hcccc--cc-------------------cCchh-hhhcCCCChhHHHHHHH
Q 024263          122 GTGLPLAASGLAIVMGLNLLEI--IEL--QLPSF--FD-------------------NFDPR-AAAANFPSSVQAYLAGL  175 (270)
Q Consensus       122 ~~~~~~~~G~lli~~Gl~~lg~--~~~--~~p~~--~~-------------------~~~~~-~~~~~~~~~~~~fllG~  175 (270)
                      ..++.+....+++.+|+.++-.  .+.  +-|+.  ..                   ...+. ++..+.......+..|+
T Consensus       130 ~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l  209 (303)
T COG2215         130 EPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGL  209 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHH
Confidence            5678999999999999998821  111  11220  00                   00011 11112233456688888


Q ss_pred             HHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhh----hhhhHHHHHHH
Q 024263          176 TFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ----SLLSF----RKFSSWINPMS  247 (270)
Q Consensus       176 ~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~----~~~~~----~~~~~~i~~i~  247 (270)
                      ..|+  .||++.+..  +..+-+.+-+..|++..+++++|+++++-..+...-..|    ++...    +|..+.++.+.
T Consensus       210 ~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~  285 (303)
T COG2215         210 TGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLG  285 (303)
T ss_pred             HhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            8887  999876643  444666788999999999999999999777666544333    22111    12233455667


Q ss_pred             HHHHHHHHHHHHHh
Q 024263          248 GALLLGGGLYTFLD  261 (270)
Q Consensus       248 G~lli~~Gi~~~~~  261 (270)
                      |.+++.+|+..++.
T Consensus       286 gli~l~~g~~~l~~  299 (303)
T COG2215         286 GLIGLYFGLHLLLG  299 (303)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777787766544

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=98.20  E-value=0.00025  Score=60.33  Aligned_cols=164  Identities=21%  Similarity=0.220  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCC
Q 024263           89 IIGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF  164 (270)
Q Consensus        89 ~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~-~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~  164 (270)
                      ..+.++...+|..+...+...+.......+ +   ...+.+.++.+..++.+|..++..-+    +...   +.....++
T Consensus        22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~~---~~~~~~~~   94 (191)
T PF01810_consen   22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSKS---STQSEAKK   94 (191)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccch---hhhhhhcc
Confidence            345677888888888888776665444433 2   23455677888888999988872211    0000   00000112


Q ss_pred             CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh-ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263          165 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  243 (270)
Q Consensus       165 ~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~-~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i  243 (270)
                      .+....|.-|+...+ .-|=+-+...++...... ..+............++....+...+...++.++..+.++.+ ++
T Consensus        95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i  172 (191)
T PF01810_consen   95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI  172 (191)
T ss_pred             ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            455667788877776 355543444444443333 222333334444555565566666666666665433333344 99


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 024263          244 NPMSGALLLGGGLYTFLD  261 (270)
Q Consensus       244 ~~i~G~lli~~Gi~~~~~  261 (270)
                      +++.|++++..|++++++
T Consensus       173 ~~~~g~~li~~av~l~~~  190 (191)
T PF01810_consen  173 NRISGLLLIGFAVYLLYS  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999998764

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=98.14  E-value=0.0019  Score=55.82  Aligned_cols=190  Identities=18%  Similarity=0.099  Sum_probs=96.2

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHH
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLA  128 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~  128 (270)
                      .+...+...++|  .|-.-..++.-.        ++..++++...+|..+.+.+...+....- ..+.   .....++++
T Consensus         9 ~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~   78 (205)
T PRK10520          9 YLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWA   78 (205)
T ss_pred             HHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            344455566666  343333333221        12345577888888887777655543322 2332   233445777


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH-HH-H
Q 024263          129 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IG-G  206 (270)
Q Consensus       129 ~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~-~g-~  206 (270)
                      .+.-++.+|..++.-   + ++..+.   ..  .++++....|.-|+...+ .-|=+-.++.+++..-...+++. .. .
T Consensus        79 Ga~YL~~lg~~~~~s---~-~~~~~~---~~--~~~~~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~~  148 (205)
T PRK10520         79 GAAYLIWLGIQQWRA---A-GAIDLH---TL--ASTQSRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQYL  148 (205)
T ss_pred             HHHHHHHHHHHHHhC---C-Cccccc---cc--cCCccHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHHH
Confidence            777788899988722   1 111000   00  011122345777777765 35554333444443322222221 11 1


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263          207 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  262 (270)
Q Consensus       207 ~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~  262 (270)
                      .+...+.+-...-....+...++.++..+.+|..++++++.|.+++.+|+++.++|
T Consensus       149 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~~~~l~~~~  204 (205)
T PRK10520        149 VLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASAR  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            12222222111222233334455555444567778999999999999999887654

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=97.98  E-value=0.0081  Score=52.39  Aligned_cols=196  Identities=25%  Similarity=0.212  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHhhc
Q 024263           48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS----FAGKAYGQIGT  123 (270)
Q Consensus        48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~----~~G~~~~~~~~  123 (270)
                      ..++..+.+.+....+|  .|..-.+++.-.+    +.||    +++...+|..+...+.-.+..    .+-+......+
T Consensus         4 ~~~l~~~~~~~~~~~~P--GP~~~~v~~~~~~----~G~~----~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~   73 (208)
T COG1280           4 TNLLAFLLAALVLAATP--GPDNLLVLARSLS----RGRR----AGLATALGIALGDLVHMLLAALGLAALLATSPALFT   73 (208)
T ss_pred             HHHHHHHHHHHHHhcCC--CccHHHHHHHHHH----hcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            34555566666677665  4444344433221    2243    455555565544333322221    11122223345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263          124 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  203 (270)
Q Consensus       124 ~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~  203 (270)
                      .+.++.+.-++.+|..++..-+   +..  +  ....+.++......|.-|+...+ .-|=.--.+.+++.+-...++..
T Consensus        74 ~lk~~GaaYL~ylg~~~~ra~~---~~~--~--~~~~~~~~~~~~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~  145 (208)
T COG1280          74 VLKLAGAAYLLYLGWKALRAGG---AAL--A--EEAAGAPSSSRRKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGL  145 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc---ccc--c--ccccccccchhHHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCch
Confidence            5677777788899998873211   000  0  00000011111357888888876 46766445556666555444332


Q ss_pred             HHHHHHHHHHhhhH---HHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263          204 IGGTLLLSYTTGYV---APLL-LAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  262 (270)
Q Consensus       204 ~g~~~l~~fglG~~---lPll-l~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~  262 (270)
                      . ...+...++.+.   .+.. .......+.+++.+.++..+++++..|.+++..|+++.+.+
T Consensus       146 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         146 V-LLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1 122222222221   2222 22223333444332267899999999999999999987654

>PRK10958 leucine export protein LeuE; Provisional

Probab=97.85  E-value=0.015  Score=50.84  Aligned_cols=182  Identities=13%  Similarity=0.075  Sum_probs=84.3

Q ss_pred             hcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH---HHhhchHHHHHHHHHHH
Q 024263           60 TSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAY---GQIGTGLPLAASGLAIV  135 (270)
Q Consensus        60 ~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~---~~~~~~~~~~~G~lli~  135 (270)
                      ..++|  .|..-..++.-.    ++.||    +++.+.+|..+.+.+...+... ++..+   ....+.++++.+..++.
T Consensus        20 ~~~sP--GP~~~~v~~~~~----~~G~r----~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~   89 (212)
T PRK10958         20 IVLLP--GPNSLYVLSTAA----RRGVK----AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLY   89 (212)
T ss_pred             HhcCC--chHHHHHHHHHH----hhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34556  555544444322    23343    3556666666666555444432 22222   23345567777778888


Q ss_pred             HHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhc-cC-hHHHH-HHHHHH
Q 024263          136 MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-KD-PLIGG-TLLLSY  212 (270)
Q Consensus       136 ~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~-gs-~~~g~-~~l~~f  212 (270)
                      +|...+.-   +........+  .  . .++....|.-|+...+ .-|=+--.+.++...-... .+ ..... .+...+
T Consensus        90 la~~~~~~---~~~~~~~~~~--~--~-~~~~~~~f~~g~~~~l-~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l~~~~  160 (212)
T PRK10958         90 LGVKMLRA---ALRRWRRRAA--S--A-APPYGAPFRRALILSL-TNPKAILFFVSFFVQFVDPNYAHPALSFLILATIL  160 (212)
T ss_pred             HHHHHHHh---hccccccccc--c--c-CcchhHHHHHHHHHHh-hChHHHHHHHHHHhcccCCCCcchHHHHHHHHHHH
Confidence            99887732   1100000000  0  0 1122245777766654 2444322222333322222 11 11111 111122


Q ss_pred             HhhhHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024263          213 TTGYVAPLLLAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFL  260 (270)
Q Consensus       213 glG~~lPlll~~~~~~~~~~-~~~~~~~~~~i~~i~G~lli~~Gi~~~~  260 (270)
                      ......-........++.++ .++.+|..+|++|+.|.+++..|+++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~  209 (212)
T PRK10958        161 QLVSFCYLSFLIFSGARLAAYFRRRKKLAAGGNSLVGLLFVGFAAKLAT  209 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22111112222333334433 2334566789999999999999998754

>PRK09304 arginine exporter protein; Provisional

Probab=97.73  E-value=0.021  Score=49.52  Aligned_cols=195  Identities=13%  Similarity=-0.002  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH---hhchH
Q 024263           50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGL  125 (270)
Q Consensus        50 ~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~~~---~~~~~  125 (270)
                      ++..+..|+..+++|=  |..-..++.-.      +++    .++...+|..+...+...+... ++..+..   ..+.+
T Consensus         5 ~~~g~~~g~~~~~tPG--P~~~~v~~~~~------~~~----~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l   72 (207)
T PRK09304          5 YFQGFALGAAMILPLG--PQNAFVMNQGI------RRQ----YHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALV   72 (207)
T ss_pred             HHHHHHHHHHHHhccC--hHHHHHHHHHH------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888877653  22322222211      122    2556667776666665444332 2223332   33445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHH
Q 024263          126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG  205 (270)
Q Consensus       126 ~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g  205 (270)
                      +++.+.-++.+|..++..-+ + ++. + .+++.  .+.++....|.-|+...+ .-|=+--.+.++...-..+.++...
T Consensus        73 ~~~Ga~YLlyLg~~~~rs~~-~-~~~-~-~~~~~--~~~~~~~~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~  145 (207)
T PRK09304         73 TWGGVAFLLWYGFGAFKTAM-S-SNI-E-LASAE--VMKQGRWKIIATMLAVTW-LNPHVYLDTFVVLGSLGGQLDVEPK  145 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-c-ccc-c-ccccc--ccCccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhccCcchh
Confidence            66677778889998873210 0 010 0 00000  111233456888887776 3555422211222211111122111


Q ss_pred             -HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 024263          206 -GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLF  264 (270)
Q Consensus       206 -~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~~  264 (270)
                       ...+.... ....-....+....+.++..+.+|..++++|+.|++++.+|+++...+..
T Consensus       146 ~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~~  204 (207)
T PRK09304        146 RWFALGTIS-ASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGIA  204 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             11122111 11222223344445555444445778899999999999999998877654

>PRK10229 threonine efflux system; Provisional

Probab=97.68  E-value=0.029  Score=48.40  Aligned_cols=191  Identities=15%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHH
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLA  128 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~  128 (270)
                      .++.++...++|  .|..-..+..-.    +.    ..+.++...+|....+.+...+..+.. ..+.   ...+.++++
T Consensus         8 ~~~~~~~~~~sP--GP~~~~vi~~~~----~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~   77 (206)
T PRK10229          8 VAMVHIVALMSP--GPDFFFVSQTAV----SR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVG   77 (206)
T ss_pred             HHHHHHHHhcCC--CchhHHHHHHHH----hc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            455566777777  343333332211    12    234566777788777766654433222 2332   233456776


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHH
Q 024263          129 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL  208 (270)
Q Consensus       129 ~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~  208 (270)
                      .+..++.+|..++.--+ + +.  +..++.. ..+.++....|.-|+...+ .-|=+-..+.+++..-........ .  
T Consensus        78 Ga~yLlylg~~~~~~~~-~-~~--~~~~~~~-~~~~~~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~~~~~~-~--  148 (206)
T PRK10229         78 GGLYLCWMGYQMLRGAL-K-KE--DVAAEEP-QVELAKSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGDNVGAG-A--  148 (206)
T ss_pred             HHHHHHHHHHHHHHhcc-c-cc--ccccccc-cccCccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCcHH-H--
Confidence            77777888988873210 0 00  0000000 0011223346888888876 466664444454543322211111 1  


Q ss_pred             HHHHHhhhH----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263          209 LLSYTTGYV----APLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  262 (270)
Q Consensus       209 l~~fglG~~----lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~  262 (270)
                      ...+..+..    .-....+....+....+..+|..+|++++.|++++..|++++++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~g~~li~~~i~l~~~~  206 (206)
T PRK10229        149 RWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR  206 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            112222221    111222222111111122346778999999999999999987653

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=97.63  E-value=0.024  Score=47.95  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCC
Q 024263           89 IIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF  164 (270)
Q Consensus        89 ~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~  164 (270)
                      ..++++.+.+|..+.+.++-.+... ++..+.   .....++++.+..++.+|..++..- .+ +..  ..+++.. .++
T Consensus        17 G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~-~~-~~~--~~~~~~~-~~~   91 (185)
T TIGR00949        17 GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK-SK-KQS--PAAQVEL-AEQ   91 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc-cc-ccc--ccccccc-ccC
Confidence            3456778888888877777655543 333333   2345567778888889999877310 00 000  0000000 111


Q ss_pred             CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccCh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263          165 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP-LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  243 (270)
Q Consensus       165 ~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~-~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i  243 (270)
                      ++....|.-|+...+ .-|=+-..+.+++..-...+.. ..-........+....-....+....+.++.++.+|..+++
T Consensus        92 ~~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  170 (185)
T TIGR00949        92 TTWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWI  170 (185)
T ss_pred             ccHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            233456788877765 3555433333434332222222 11112222222222222333334444444333446778999


Q ss_pred             HHHHHHHHHHHHHH
Q 024263          244 NPMSGALLLGGGLY  257 (270)
Q Consensus       244 ~~i~G~lli~~Gi~  257 (270)
                      +++.|++++.+|+.
T Consensus       171 n~~~g~~l~~~~v~  184 (185)
T TIGR00949       171 DGITGALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998874

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=97.50  E-value=0.017  Score=50.35  Aligned_cols=189  Identities=15%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             HHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHH
Q 024263           56 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV  135 (270)
Q Consensus        56 ~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~  135 (270)
                      ..+...++|  +..+|.+++...+. ++++||+..++...+.....+.+...|-.+-   +.++...+.+++..|+++.+
T Consensus         9 ~~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~   82 (203)
T PF01914_consen    9 ITLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFL   82 (203)
T ss_pred             HHHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence            345555555  45688888776443 3355667777777777777777766664432   33433345689999999999


Q ss_pred             HHHHHHHHhhhhcccccccCchhhhh-cCCCChhHHHHHHHHHhhccCCCchH-HHHHHHHHHhhccChHHHHHHHHHHH
Q 024263          136 MGLNLLEIIELQLPSFFDNFDPRAAA-ANFPSSVQAYLAGLTFALAASPCSTP-VLATLLGYVATSKDPLIGGTLLLSYT  213 (270)
Q Consensus       136 ~Gl~~lg~~~~~~p~~~~~~~~~~~~-~~~~~~~~~fllG~~~gl~~~PC~~p-~l~~il~~a~~~gs~~~g~~~l~~fg  213 (270)
                      .|+.|+..-+.    .. +.++..+. .+...-...+=+++..-     + || ....++......+++..-.....+..
T Consensus        83 ia~~ml~~~~~----~~-~~~~~~~~~~~~~~~~ai~PLa~Pll-----a-GPG~It~vi~~~~~~~~~~~~~~~~~ai~  151 (203)
T PF01914_consen   83 IALEMLFGSPS----SE-KSSPDEKEEAKDAEDIAIVPLAIPLL-----A-GPGTITTVIVLSAEAGSLQSLLIVLIAIL  151 (203)
T ss_pred             HHHHHhCCCCc----cc-ccccchhhhhcccccceecccchhhc-----c-ChHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            99999832111    10 00011000 01111111111222221     1 12 23344554444444322223333322


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 024263          214 TGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL  263 (270)
Q Consensus       214 lG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~  263 (270)
                      +-..+-.+. -..++++.|.. .++-.+.+.|+.|+++...|+-++++.+
T Consensus       152 ~~~~~~~l~-l~~a~~i~~~l-G~~g~~vi~Ri~Glil~aiavq~i~~Gl  199 (203)
T PF01914_consen  152 LVALITYLI-LRFADKIMRRL-GKTGLQVITRIMGLILAAIAVQMILSGL  199 (203)
T ss_pred             HHHHHHHHH-HHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222 22233333221 1345578999999999999998887654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR00427 membrane protein, MarC family

Probab=97.45  E-value=0.044  Score=47.67  Aligned_cols=81  Identities=15%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             HHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHH
Q 024263           55 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI  134 (270)
Q Consensus        55 ~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli  134 (270)
                      ...+..-++|  +...|.+++...+. ++++|++..++...+.....+.|...|-.+-   +.++...+.+++..|+++.
T Consensus        11 ~~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL---~~fgIsl~afrIaGGiiL~   84 (201)
T TIGR00427        11 FISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDTIL---KLFGISIDAFRIAGGILLF   84 (201)
T ss_pred             HHHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHH
Confidence            3355555555  56788888876443 3345666667777777777777777765432   3443334568999999999


Q ss_pred             HHHHHHH
Q 024263          135 VMGLNLL  141 (270)
Q Consensus       135 ~~Gl~~l  141 (270)
                      ..|+.|+
T Consensus        85 ~ia~~ml   91 (201)
T TIGR00427        85 TIAMDML   91 (201)
T ss_pred             HHHHHHh
Confidence            9999998

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=97.43  E-value=0.0023  Score=55.74  Aligned_cols=88  Identities=27%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             HHHHHHHHhhcC--cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhchH
Q 024263           51 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL  125 (270)
Q Consensus        51 ~~~f~~Gll~~l--sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~---~~~~~~~~  125 (270)
                      ..+|+.|+..++  +||+.|++-.++++...+   ++..+....-..|++|+.+-+.+++.......+.   ...+.+++
T Consensus       118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i  194 (211)
T PF02683_consen  118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI  194 (211)
T ss_pred             ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444544332  599999888887776542   2233455667799999999999999888766633   34556678


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024263          126 PLAASGLAIVMGLNLL  141 (270)
Q Consensus       126 ~~~~G~lli~~Gl~~l  141 (270)
                      +.+.|++++.+|+.++
T Consensus       195 ~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  195 KRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999875

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK10995 inner membrane protein; Provisional

Probab=97.40  E-value=0.012  Score=51.79  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHH
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGL  132 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~l  132 (270)
                      ....++..-++|  +...|++++...+. ++++|++..++...+.....+.+...|-.+-   +.++...+.+++..|++
T Consensus        10 ~~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaGGil   83 (221)
T PRK10995         10 LGLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAGGLI   83 (221)
T ss_pred             HHHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHH
Confidence            334466666655  56788888876443 2345556666666666666666655554332   33433445689999999


Q ss_pred             HHHHHHHHH
Q 024263          133 AIVMGLNLL  141 (270)
Q Consensus       133 li~~Gl~~l  141 (270)
                      +..+|+.|+
T Consensus        84 L~~igi~ml   92 (221)
T PRK10995         84 VAFIGFRML   92 (221)
T ss_pred             HHHHHHHHh
Confidence            999999998

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0017  Score=57.38  Aligned_cols=90  Identities=26%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhcC--cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-H---HHHh
Q 024263           48 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-A---YGQI  121 (270)
Q Consensus        48 ~~~~~~f~~Gll~~l--sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~-~---~~~~  121 (270)
                      .+..-.|..|+..++  +||..|.+...++....   +++-.+....-..|++|..+.|.+++...+...+ .   +..+
T Consensus       124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~  200 (220)
T COG0785         124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH  200 (220)
T ss_pred             CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666654  69999988888776543   2233455667789999999999999999987776 3   3455


Q ss_pred             hchHHHHHHHHHHHHHHHH
Q 024263          122 GTGLPLAASGLAIVMGLNL  140 (270)
Q Consensus       122 ~~~~~~~~G~lli~~Gl~~  140 (270)
                      ++.++++.|++++++|+.+
T Consensus       201 ~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         201 SGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999875

>PRK11111 hypothetical protein; Provisional

Probab=97.25  E-value=0.042  Score=48.27  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             HHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHH
Q 024263           55 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI  134 (270)
Q Consensus        55 ~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli  134 (270)
                      ...+...++|  +..+|++++...+. ++++|++..++...+.....+.|...|-.+-   +.++...+.+++..|+++.
T Consensus        14 ~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL---~~fGIsl~afrIaGGiiL~   87 (214)
T PRK11111         14 FIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDFIL---NLFGISIDSFRIAGGILVV   87 (214)
T ss_pred             HHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHH
Confidence            3456666655  56789998876543 2345666666776777766666666654332   2333333568999999999


Q ss_pred             HHHHHHH
Q 024263          135 VMGLNLL  141 (270)
Q Consensus       135 ~~Gl~~l  141 (270)
                      ..|+.|+
T Consensus        88 ~ial~Ml   94 (214)
T PRK11111         88 TIAMSMI   94 (214)
T ss_pred             HHHHHHh
Confidence            9999998

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=97.20  E-value=0.12  Score=44.41  Aligned_cols=151  Identities=12%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCCh
Q 024263           92 DSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSS  167 (270)
Q Consensus        92 ~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~  167 (270)
                      +++...+|..+.+.+...+..... ....   ...+.++++.+.-++.+|..++.-   + ++.    +..  +.+.   
T Consensus        38 ~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s---~-~~~----~~~--~~~~---  104 (195)
T PRK10323         38 QSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS---P-TKE----DGL--QAKP---  104 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-Ccc----ccC--CCCC---
Confidence            355666676666666543333222 2222   223445666666678889887621   1 110    000  0111   


Q ss_pred             hHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHH-H-HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 024263          168 VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG-G-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP  245 (270)
Q Consensus       168 ~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g-~-~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~  245 (270)
                       ..|.-|+...+ .-|=+--.+.+++..-...+++... . .+...+.+....-.........+.++.  .+|++++++|
T Consensus       105 -~~f~~G~~~~l-~NPKa~lf~~a~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~  180 (195)
T PRK10323        105 -ISFWASFALQF-VNVKIILYGITALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRL--FRQYGRQLNI  180 (195)
T ss_pred             -hhHHHHHHHHh-HCHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence             23556666654 3455433334444443332222111 1 111112211111111222222334332  3356789999


Q ss_pred             HHHHHHHHHHHHHH
Q 024263          246 MSGALLLGGGLYTF  259 (270)
Q Consensus       246 i~G~lli~~Gi~~~  259 (270)
                      +.|.+++..|++++
T Consensus       181 ~~g~~l~~~a~~l~  194 (195)
T PRK10323        181 VLALLLVYCAVRIF  194 (195)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998865

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=96.95  E-value=0.032  Score=49.35  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHH-hhhcCcc
Q 024263          244 NPMSGALLLGGGLYTFL-DRLFPTT  267 (270)
Q Consensus       244 ~~i~G~lli~~Gi~~~~-~~~~~~~  267 (270)
                      ..+.|-+|+..|+|+++ .-+.|+.
T Consensus       160 p~~LG~~Mi~~GlyfLl~aliiPn~  184 (224)
T PF09930_consen  160 PIILGNFMIFLGLYFLLSALIIPNY  184 (224)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhH
Confidence            45789999999999884 4455553

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=96.68  E-value=0.02  Score=57.30  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHhhccCCCchHHHHHHHHHHhhcc---ChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263          167 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---DPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  243 (270)
Q Consensus       167 ~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~g---s~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i  243 (270)
                      ...+|+.|++.++  +||+.|++-.........+   +...+...-++|.+|.++-+.+++...+..-.........+|+
T Consensus       169 l~~afl~Glll~l--~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~  246 (571)
T PRK00293        169 LLWFFLIGIGLAF--TPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV  246 (571)
T ss_pred             HHHHHHHHHHHhc--cchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4568888988876  9999988654444333222   3456677788999999999888887666542111111235788


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024263          244 NPMSGALLLGGGLYTF  259 (270)
Q Consensus       244 ~~i~G~lli~~Gi~~~  259 (270)
                      ....+++++++|+.++
T Consensus       247 ~~~~~~l~v~lgL~~~  262 (571)
T PRK00293        247 LIGLSILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899999999998764

>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function

Probab=96.66  E-value=0.068  Score=46.16  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-------chHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhc
Q 024263           90 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA  162 (270)
Q Consensus        90 l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~-------~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~  162 (270)
                      ......|..|-..+-+..|..+..+...++...       +.-.++.+.++++.|++++.-.|..=-+.-++-..-....
T Consensus        36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~~~~  115 (191)
T PF09948_consen   36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFLAFH  115 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHhhcC
Confidence            455678999999999999999877766554321       1235778888999999998655432111101000000112


Q ss_pred             CCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 024263          163 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSW  242 (270)
Q Consensus       163 ~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~  242 (270)
                      -+.+..+++-+|+-.|..-..|+-++...                 +++.|.....-+..++.+. ..+   |....+++
T Consensus       116 wr~g~~~alr~Gl~hG~~CvGCCWaLMll-----------------mfv~G~mnl~wMa~lt~~~-~~E---K~~p~g~~  174 (191)
T PF09948_consen  116 WRAGARGALRMGLRHGLYCVGCCWALMLL-----------------MFVVGVMNLAWMAALTALM-FAE---KLLPWGRR  174 (191)
T ss_pred             CCcccchHHHHHHHHccHHHHHHHHHHHH-----------------HHHhccccHHHHHHHHHHH-HHH---HhCCcchH
Confidence            33457889999999999888888655332                 2222223322222222211 122   23456788


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024263          243 INPMSGALLLGGGLYT  258 (270)
Q Consensus       243 i~~i~G~lli~~Gi~~  258 (270)
                      +.|..|+.+++.|+.+
T Consensus       175 l~r~~G~~l~~~g~~l  190 (191)
T PF09948_consen  175 LSRAVGVALIVWGVLL  190 (191)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999874

>PRK10739 putative antibiotic transporter; Provisional

Probab=96.66  E-value=0.24  Score=42.97  Aligned_cols=79  Identities=13%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             HHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHH
Q 024263           57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  136 (270)
Q Consensus        57 Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~  136 (270)
                      .+...++|  +...|.+++...+. ++++|||..++...+.....+.|...|=.+-   +.++...+.+++..|+++...
T Consensus        10 ~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fGIsl~afrIAGGilL~~i   83 (197)
T PRK10739         10 LLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEKIL---AFLNLRTETVSISGGIILFLI   83 (197)
T ss_pred             HHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence            44455444  56788888876443 3345666666676666666666666654332   333333356899999999999


Q ss_pred             HHHHH
Q 024263          137 GLNLL  141 (270)
Q Consensus       137 Gl~~l  141 (270)
                      |+.|+
T Consensus        84 al~ml   88 (197)
T PRK10739         84 AIKMI   88 (197)
T ss_pred             HHHHh
Confidence            99998

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.43  E-value=0.26  Score=42.97  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=55.3

Q ss_pred             HHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHH
Q 024263           57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  136 (270)
Q Consensus        57 Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~  136 (270)
                      .+....+|=  .-+|.+.+..... +.++|++..++...+.+.....|...|-..-   +.++...+.+++..|+++...
T Consensus        13 ~Lf~i~dP~--G~ipvf~slt~~~-~~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~i   86 (203)
T COG2095          13 LLFAIIDPI--GNLPVFISLTKGL-SPEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLI   86 (203)
T ss_pred             HHHHHhCCC--chhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHH
Confidence            444445654  3567777765433 2356777888888999998888888875543   334333356899999999999


Q ss_pred             HHHHH
Q 024263          137 GLNLL  141 (270)
Q Consensus       137 Gl~~l  141 (270)
                      |+.|+
T Consensus        87 a~~ml   91 (203)
T COG2095          87 ALRML   91 (203)
T ss_pred             HHHHh
Confidence            99998

>TIGR00948 2a75 L-lysine exporter

Probab=96.36  E-value=0.5  Score=39.70  Aligned_cols=151  Identities=13%  Similarity=-0.007  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH-HHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChh
Q 024263           93 SIAFSLGLATTLALLGVGASFAGK-AYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV  168 (270)
Q Consensus        93 ~l~f~lG~~~sy~~lG~l~~~~G~-~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~  168 (270)
                      ++...+|..+...+...+..+... .+.   ...+.+.++.+..++.+|..++.--+ +.+  .+ .  .....++++..
T Consensus        22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~--~~-~--~~~~~~~~~~~   95 (177)
T TIGR00948        22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGP--GA-L--VPDEPKKMGLK   95 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--cc-c--ccccccccCHH
Confidence            667777888777766554443222 333   23345677777788889998873211 100  00 0  00001112334


Q ss_pred             HHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 024263          169 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG  248 (270)
Q Consensus       169 ~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G  248 (270)
                      ..|.-|+...+ .-|=+...+.++......+.+...-..+...+.+....-....+...++.+++.+.+|..++++++.|
T Consensus        96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g  174 (177)
T TIGR00948        96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIINLVVA  174 (177)
T ss_pred             HHHHHHHHHHH-hCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh
Confidence            56888888876 46665332222222222211111111111222222222222333444455544445567788999888


Q ss_pred             HH
Q 024263          249 AL  250 (270)
Q Consensus       249 ~l  250 (270)
                      ++
T Consensus       175 ~~  176 (177)
T TIGR00948       175 VV  176 (177)
T ss_pred             hc
Confidence            64

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=96.17  E-value=0.96  Score=41.03  Aligned_cols=65  Identities=18%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024263           48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ  120 (270)
Q Consensus        48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~  120 (270)
                      ..+..+|+.|+.=++.|=-.-.+  ..+|..+      +|+..+.++.+.+|-.++-.+.+.++..+...+.+
T Consensus         3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~   67 (282)
T PF03824_consen    3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE   67 (282)
T ss_pred             HHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45778999999999998876655  4455432      22345678888888888888888777766655543

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=95.94  E-value=0.065  Score=46.14  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHH
Q 024263           49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA  128 (270)
Q Consensus        49 ~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~  128 (270)
                      .....|..|++.++.||. ++.+.......    ..+-.+.......|.+|........|.....+.+..+   +.+...
T Consensus       117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~  188 (199)
T PF13386_consen  117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL  188 (199)
T ss_pred             CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            356688899999999996 44544432222    1334456677889999999888888888877666554   344558


Q ss_pred             HHHHHHHHHH
Q 024263          129 ASGLAIVMGL  138 (270)
Q Consensus       129 ~G~lli~~Gl  138 (270)
                      .|.+++++|+
T Consensus       189 ~g~~~i~~G~  198 (199)
T PF13386_consen  189 AGVLLIILGI  198 (199)
T ss_pred             HHHHHHHHHH
Confidence            8888888886

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=94.38  E-value=0.55  Score=42.93  Aligned_cols=84  Identities=29%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H---HHhhch---H
Q 024263           53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-Y---GQIGTG---L  125 (270)
Q Consensus        53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~-~---~~~~~~---~  125 (270)
                      .+..|+..++-||..++.-.+++...     +.-...+...++|.+|..++.+.+|.++....+. .   ...++.   .
T Consensus       180 ~l~igl~~Gl~PCpgAl~VLL~a~~l-----g~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~  254 (279)
T PRK10019        180 ILLFGLTGGLIPCPAAITVLLICIQL-----KALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA  254 (279)
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45678888889998887766655533     2233456778899999999999999988533322 1   112333   4


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024263          126 PLAASGLAIVMGLNLL  141 (270)
Q Consensus       126 ~~~~G~lli~~Gl~~l  141 (270)
                      +++.+.+.+++|+.+.
T Consensus       255 p~~s~~l~i~~G~~~~  270 (279)
T PRK10019        255 PYFSSLLIGLVGVYMG  270 (279)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5899999999999876

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=89.49  E-value=2.6  Score=42.15  Aligned_cols=90  Identities=24%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             ChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh----ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHhhhhhh
Q 024263          166 SSVQAYLAGLTFALAASPCSTPVLATLLGYVAT----SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ-SLLSFRKFS  240 (270)
Q Consensus       166 ~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~----~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~-~~~~~~~~~  240 (270)
                      +...+|+.|+...+  +||.-|++ +++.....    ..|...+..+-+.|+.|+++-..+++....... .|. ..-.+
T Consensus       169 ~ll~afl~GLlL~f--tPCVLPml-pl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q-~qLQ~  244 (569)
T COG4232         169 SLLLAFLGGLLLNF--TPCVLPML-PLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQ-AQLQQ  244 (569)
T ss_pred             HHHHHHHHHHHHhh--ccHhhhhH-HHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhh-HhHcc
Confidence            35677888887776  99999885 44433322    246677778888899998877777766544321 121 12235


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 024263          241 SWINPMSGALLLGGGLYTF  259 (270)
Q Consensus       241 ~~i~~i~G~lli~~Gi~~~  259 (270)
                      +|+--...++|+++++-|+
T Consensus       245 P~vl~~la~lf~llALSMf  263 (569)
T COG4232         245 PWVLGGLAALFVLLALSMF  263 (569)
T ss_pred             cHHHHHHHHHHHHHHHHhh
Confidence            7777777788888776654

>COG5486 Predicted metal-binding integral membrane protein [Function unknown]

Probab=89.27  E-value=10  Score=33.96  Aligned_cols=169  Identities=19%  Similarity=0.182  Sum_probs=98.6

Q ss_pred             cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhchHHHHHHHHHHH
Q 024263           63 SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAIV  135 (270)
Q Consensus        63 sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~-------~~~~~~~~~G~lli~  135 (270)
                      .|-..||+-.+.. +.++  .+.|.+...+...|..|-..+....|.++..+-...+.       ..+.-.++.|..+++
T Consensus        98 lPsaaPmi~~ya~-i~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~v  174 (283)
T COG5486          98 LPSAAPMILLYAE-IGRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLLV  174 (283)
T ss_pred             CccccHHHHHHHH-HHHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHHH
Confidence            4888777755532 1111  11222345668899999999999998887643333321       122346677778899


Q ss_pred             HHHHHHHHhh------hhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHH
Q 024263          136 MGLNLLEIIE------LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL  209 (270)
Q Consensus       136 ~Gl~~lg~~~------~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l  209 (270)
                      -|++++.-.|      ++-|-.+-  .  +.-..+.++.++|-+|+==|+...-|+=.+.                 +++
T Consensus       175 AGlYQft~LK~~CL~qCrtPl~fl--~--shw~fr~~p~ga~~LGlrhGlyClGCCWALm-----------------~ll  233 (283)
T COG5486         175 AGLYQFTTLKHACLSQCRTPLSFL--F--SHWRFRAKPVGAFRLGLRHGLYCLGCCWALM-----------------LLL  233 (283)
T ss_pred             hhhhhhccHHHHHHHHccchHHHH--H--HhcCcccCcchhhhhccccccchHHHHHHHH-----------------HHH
Confidence            9999884332      23332110  0  0012346678899999999988778873221                 223


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263          210 LSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF  259 (270)
Q Consensus       210 ~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~  259 (270)
                      ++=|.+...-+..++.+.    ...|....++++.|+.|.++...|.+.+
T Consensus       234 fv~Gvmnl~Wma~ial~v----liEK~~~~Gr~~srv~gall~a~gaw~l  279 (283)
T COG5486         234 FVVGVMNLLWMALIALLV----LIEKQTSPGRRLSRVAGALLAAAGAWLL  279 (283)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhccCcccchHHHHHHHHHHHHHhhc
Confidence            333444433333333321    1122345678888899999999998853

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.92  E-value=8.8  Score=35.41  Aligned_cols=88  Identities=24%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------
Q 024263           49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG---------  119 (270)
Q Consensus        49 ~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~---------  119 (270)
                      +.-..+..|+..++-||..++....+++..+     -..-.+...+++++|..+|-+.++.++-..-+..-         
T Consensus       200 ~~~~~~~~~l~~GLrPCpgAi~VLlfal~~g-----l~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~  274 (303)
T COG2215         200 DWKQQWLFGLTGGLRPCPGAIFVLLFALSLG-----LYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLA  274 (303)
T ss_pred             cHHHHHHHHHHhcCccCcHHHHHHHHHHHhc-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3445667788888899999988777776532     12234667888999999997777666544333211         


Q ss_pred             -HhhchHHHHHHHHHHHHHHHHH
Q 024263          120 -QIGTGLPLAASGLAIVMGLNLL  141 (270)
Q Consensus       120 -~~~~~~~~~~G~lli~~Gl~~l  141 (270)
                       .+.....++.|.+++++|+.++
T Consensus       275 ~~~~~~~~l~~gli~l~~g~~~l  297 (303)
T COG2215         275 KRISYIVSLLGGLIGLYFGLHLL  297 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence             1122456778888889998877

>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter

Probab=86.14  E-value=16  Score=33.83  Aligned_cols=131  Identities=13%  Similarity=0.047  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263          125 LPLAASGLAIVMGLNLLEI-IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  203 (270)
Q Consensus       125 ~~~~~G~lli~~Gl~~lg~-~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~  203 (270)
                      +..+.|+-++++|+.+++. .+ +.  ..++.++... +-.+++..+++.|.......=+-+......+-...+.--+..
T Consensus         5 ~~llgGlgl~l~Gl~~~~~~l~-~~--~g~~~~~~l~-~~t~~~~~a~l~G~~~Tal~QSSsa~t~i~i~lv~~G~l~~~   80 (307)
T TIGR00704         5 LHLLSAVAFLLWGMHIVRTGVM-RV--FGARLRTVLS-RSTEKKPLAFLAGIGVTAIVQSSNATTVLVISFVAAGVLSLA   80 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HH--hhhHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            4566777788899998833 22 11  0111111111 223567778888888776433222222222111111122556


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263          204 IGGTLLLSYTTGYVAPLLLAASFAG----------ALQSLLSFRKFSSWINPMSGALLLGGGLYTF  259 (270)
Q Consensus       204 ~g~~~l~~fglG~~lPlll~~~~~~----------~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~  259 (270)
                      .+..++..=++|+++.-.+++.-..          -...+.+.+|.+++-+-+.|+-++..|+.++
T Consensus        81 ~al~iilGANiGTt~t~~l~s~~~~~~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m  146 (307)
T TIGR00704        81 PAIVIILGANVGTTLTARILAFDLSILSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELI  146 (307)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666667777555444332111          1111122345566777778888888887765

This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=86.03  E-value=22  Score=30.75  Aligned_cols=74  Identities=11%  Similarity=0.063  Sum_probs=45.5

Q ss_pred             cCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024263          181 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFL  260 (270)
Q Consensus       181 ~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~  260 (270)
                      ...|.-.+|.+.++    +.|+.+-...+..|.+..++-..+. ....+.+...  +..+|+-+++..+++|..|+|.++
T Consensus       108 nGgDNigIYiP~Fa----~~s~~~l~v~l~vF~ilv~v~c~la-~~l~~~p~i~--~~leryg~~l~p~v~I~LGi~Il~  180 (191)
T PF03596_consen  108 NGGDNIGIYIPLFA----SLSLAELIVILIVFLILVGVWCFLA-YKLARIPIIA--EFLERYGRWLVPIVYIGLGIYILI  180 (191)
T ss_pred             cCCCeEEEeehhhh----cCCHHHHHHHHHHHHHHHHHHHHHH-HHHhCChHHH--HHHHHhcccHHHHHHHHhCceeeE
Confidence            36788777777664    4456666777777777764443332 2222222222  234556667788899999999765


Q ss_pred             h
Q 024263          261 D  261 (270)
Q Consensus       261 ~  261 (270)
                      +
T Consensus       181 e  181 (191)
T PF03596_consen  181 E  181 (191)
T ss_pred             e
Confidence            3

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family

Probab=83.52  E-value=16  Score=33.40  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             HHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hc---h
Q 024263           52 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI----GT---G  124 (270)
Q Consensus        52 ~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~----~~---~  124 (270)
                      +++..|+-=++-|=.+..+--...-..     +++|+....+..|++|=..+-.+..++++.....+.+.    ++   .
T Consensus         3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~   77 (280)
T TIGR00802         3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL   77 (280)
T ss_pred             HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence            355566665655555443322221111     12334566788999998877776666655444333221    22   1


Q ss_pred             -HHHHHHHHHHHHHHHHH----HHhh-hhccccc-------------ccCchh-hhh--cCCCChhHHHHHHHHHhhccC
Q 024263          125 -LPLAASGLAIVMGLNLL----EIIE-LQLPSFF-------------DNFDPR-AAA--ANFPSSVQAYLAGLTFALAAS  182 (270)
Q Consensus       125 -~~~~~G~lli~~Gl~~l----g~~~-~~~p~~~-------------~~~~~~-~~~--~~~~~~~~~fllG~~~gl~~~  182 (270)
                       -..+.+.+++++|+.-+    +..+ ++-.+.-             +.+..| .++  +..++++.-+.+|++||+.+=
T Consensus        78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD  157 (280)
T TIGR00802        78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD  157 (280)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence             25667777777776654    2111 1111100             000001 001  124677888999999998654


Q ss_pred             CCchHHHHHHHHHHhhccChH-HHHHHHHHHHhhhHH
Q 024263          183 PCSTPVLATLLGYVATSKDPL-IGGTLLLSYTTGYVA  218 (270)
Q Consensus       183 PC~~p~l~~il~~a~~~gs~~-~g~~~l~~fglG~~l  218 (270)
                      .-+---+.++-..+++++-+. .-..+.+.|..|+++
T Consensus       158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L  194 (280)
T TIGR00802       158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMAL  194 (280)
T ss_pred             hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHH
Confidence            443223334333333344344 344557788888854

This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.

>PRK11469 hypothetical protein; Provisional

Probab=83.22  E-value=28  Score=29.81  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263          238 KFSSWINPMSGALLLGGGLYTFLDR  262 (270)
Q Consensus       238 ~~~~~i~~i~G~lli~~Gi~~~~~~  262 (270)
                      +.++|.+.+.|+++++.|++++++.
T Consensus       161 ~~g~~a~~lgG~iLI~iGi~il~~h  185 (188)
T PRK11469        161 IIGKKAEILGGLVLIGIGVQILWTH  185 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999987653

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=80.59  E-value=34  Score=28.99  Aligned_cols=142  Identities=18%  Similarity=0.086  Sum_probs=71.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhc
Q 024263           83 GKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA  162 (270)
Q Consensus        83 ~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~  162 (270)
                      ++.|++....+....+..-..+...|.-+      ++  .+++++..|.+++..+..|+...+      .+ .+.+.  +
T Consensus        29 ~~~r~~~~~~G~~~A~vlr~if~~~G~~l------l~--~~~~~iaGGllLl~ia~~ml~~~~------~~-~~~~~--~   91 (176)
T TIGR03717        29 AHQRKKAIFWGTAGAIVLRILLTAVAVYL------LA--IPFLKLIGGLLLLWIGWKLLLEEE------EE-QGGDV--K   91 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--hHHHHHHHHHHHHHHHHHHHhccc------cc-ccccc--c
Confidence            34565666666555555555555544322      22  256789999999999999973211      00 00000  1


Q ss_pred             CCCChhHHH----HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q 024263          163 NFPSSVQAY----LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRK  238 (270)
Q Consensus       163 ~~~~~~~~f----llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~  238 (270)
                      +.++.+.+.    ..=+.+++          =++++..+.+.+    =.....+|+..++|++..+.  +.+.+   +-+
T Consensus        92 ~~~~~~~~v~~I~~~D~~fS~----------DsV~a~~~~~~~----~~~li~~g~~i~i~~m~~~s--~~~~~---~~~  152 (176)
T TIGR03717        92 GSTTLWAAIKTIVIADAVMSL----------DNVLAVAGAAHG----HLGLLIFGLLLSIPIIVWGS--TLILK---LMD  152 (176)
T ss_pred             ccCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHH--HHHHH---HHH
Confidence            122222221    11122221          122322222221    13455667777778777543  22222   234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 024263          239 FSSWINPMSGALLLGGGLYTFL  260 (270)
Q Consensus       239 ~~~~i~~i~G~lli~~Gi~~~~  260 (270)
                      ..++++.....++...|+=+++
T Consensus       153 ~~p~l~~~~~~~L~~ig~kl~~  174 (176)
T TIGR03717       153 RFPWIIYIGAALLGYVAGEMIV  174 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4588888888888888876553

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00