Citrus Sinensis ID: 024274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MMTSSSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGRQCPFFNELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRLNADELSDEEDDDEEQSEEEEEEEERPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLINQNNP
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mmtsssssAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRergysrtpdqckckwknlvnrykgketsdpdsgrqcpffnELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRlnadelsdeedddeeqseeeeeeeerpargnsrkrkiernvsdkspratsgtAGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLINQNNP
mmtsssssahaqavqwgneetrdlivirgeterdlvgikrnktiweivsvklrergysrtpdqckckwknlvNRYKGketsdpdsgrqcPFFNELHAVFTERAKNMQRLLAEseagsmqakkrfkrlnadelsdeedddeeqseeeeeeeerpargnsrkrkiernvsdkspratsgtagIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLererllveqawrekeeqrrireesraerrdALLTTLltklinqnnp
MMTsssssAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGRQCPFFNELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRLNAdelsdeedddeeqseeeeeeeeRPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFDQQQRMEVEWrqmmerraqerqLFEEEWRQRMEKLERERLLVEQAWrekeeqrrireesraerrDALLTTLLTKLINQNNP
***************WGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRY*************CPFFNELHAVFT************************************************************************************LKAFF*******************************************************************LTTLLT********
*******************ETRDLIVIRGETER*****KRN*TIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR****************FFNELHAVFT************************************************************************************************************************************************************LTTLL**L******
***************WGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYK*********GRQCPFFNELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRLNA**********************************************SGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAW**************AERRDALLTTLLTKLINQNNP
*************VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGRQCPFFNELHAVFTERAK**************************************************************************AGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLIN****
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MMTSSSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGRQCPFFNELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRLNxxxxxxxxxxxxxxxxxxxxxxxxPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxRRIREESRAERRDALLTTLLTKLINQNNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
O80450289 Trihelix transcription fa yes no 0.911 0.851 0.391 2e-32
Q9SDW0323 Trihelix transcription fa no no 0.929 0.777 0.379 7e-30
Q8IWY8 852 Zinc finger and SCAN doma yes no 0.596 0.188 0.274 7e-10
B2KFW1 1030 Zinc finger and SCAN doma no no 0.574 0.150 0.296 2e-09
Q9LU92372 Trihelix transcription fa no no 0.396 0.287 0.321 4e-09
Q9FX53406 Trihelix transcription fa no no 0.518 0.344 0.279 9e-09
P17040 1043 Zinc finger and SCAN doma no no 0.592 0.153 0.3 9e-09
Q39117575 Trihelix transcription fa no no 0.359 0.168 0.333 6e-08
Q63HK3 967 Zinc finger protein with no no 0.329 0.092 0.333 3e-06
Q8H181619 Trihelix transcription fa no no 0.314 0.137 0.32 2e-05
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1 Back     alignment and function desciption
 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 162/271 (59%), Gaps = 25/271 (9%)

Query: 3   TSSSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPD 62
            +S  +   +  QW  EET++LI IRGE ++  +  KRNK +WE++S K+R++ + R+P+
Sbjct: 29  IASPVAVGDRFPQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPE 88

Query: 63  QCKCKWKNLVNRYKGKETSDPDSGRQ-CPFFNELHAVFTERAKNMQRLLAESEAGSMQAK 121
           QCKCKWKNLV R+KG ET + ++ RQ  PF++++  +FT R + M    +E   G     
Sbjct: 89  QCKCKWKNLVTRFKGCETMEAETARQQFPFYDDMQNIFTTRMQRMLWAESEGGGGGTSGA 148

Query: 122 KRFKRLNADE--------LSDEEDDDEEQSEEEEEEEERPARGNSRKRKIERNVSDKSPR 173
            R +  ++DE        L D  +D +  +         P +  ++KRK           
Sbjct: 149 ARKREYSSDEEEENVNEELVDVSNDPKILN---------PKKNIAKKRK-------GGSN 192

Query: 174 ATSGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQ 233
           +++   G+ E+L+ F   Q RME EWR+  E R +ER   EEEWR++ME+LE+ERL +E+
Sbjct: 193 SSNSNNGVREVLEEFMRHQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKERLAMER 252

Query: 234 AWREKEEQRRIREESRAERRDALLTTLLTKL 264
            WR++EEQRR REE RAE+RD+L+  LL KL
Sbjct: 253 MWRDREEQRRSREEMRAEKRDSLINALLAKL 283
Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1 Back     alignment and function description
>sp|Q8IWY8|ZSC29_HUMAN Zinc finger and SCAN domain-containing protein 29 OS=Homo sapiens GN=ZSCAN29 PE=1 SV=2 Back     alignment and function description
>sp|B2KFW1|ZSC20_MOUSE Zinc finger and SCAN domain-containing protein 20 OS=Mus musculus GN=Zscan20 PE=2 SV=2 Back     alignment and function description
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function description
>sp|P17040|ZSC20_HUMAN Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens GN=ZSCAN20 PE=2 SV=3 Back     alignment and function description
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 OS=Homo sapiens GN=ZKSCAN2 PE=1 SV=2 Back     alignment and function description
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
224138384274 predicted protein [Populus trichocarpa] 0.922 0.908 0.709 2e-85
356495258308 PREDICTED: trihelix transcription factor 0.933 0.818 0.650 3e-81
359474775303 PREDICTED: trihelix transcription factor 0.933 0.831 0.669 3e-78
151303117261 transcription factor TF2 [Gossypium hirs 0.933 0.965 0.679 6e-78
255557715286 transcription factor, putative [Ricinus 0.918 0.867 0.687 1e-76
357484569302 Zinc finger and SCAN domain-containing p 0.944 0.844 0.624 6e-75
224074567220 predicted protein [Populus trichocarpa] 0.796 0.977 0.681 1e-67
242077054271 hypothetical protein SORBIDRAFT_06g02754 0.874 0.870 0.583 3e-65
296085506212 unnamed protein product [Vitis vinifera] 0.777 0.990 0.684 1e-63
293333569271 uncharacterized protein LOC100384464 [Ze 0.874 0.870 0.575 1e-62
>gi|224138384|ref|XP_002326589.1| predicted protein [Populus trichocarpa] gi|222833911|gb|EEE72388.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 214/251 (85%), Gaps = 2/251 (0%)

Query: 20  ETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKE 79
           ET++ I IR E E+D    KRNKT+WEIVSVK+RE+GY RTP+QCKCKWKNLVNRYKGKE
Sbjct: 24  ETKEFIGIRAELEKDFTVTKRNKTLWEIVSVKMREKGYRRTPEQCKCKWKNLVNRYKGKE 83

Query: 80  TSDPDSGRQCPFFNELHAVFTERAKNMQRLLAESEAGSMQAKKRFKRLNADELSDEEDDD 139
           TSDP++GRQCPFF ELHAVFTERAKNMQRLL ESEAGS Q++K+ KR + D  S +E  +
Sbjct: 84  TSDPETGRQCPFFEELHAVFTERAKNMQRLLLESEAGSTQSRKKMKRTSGDR-SSDEFSE 142

Query: 140 EEQSEEEEEEEERPARGNSRKRKIERNVSDKSPRATSGT-AGIHEMLKAFFDQQQRMEVE 198
           EE  +E++ EEE+P R NSRKRK+E+ +++KSPRA+S T  GI EMLK F  QQQ+ME++
Sbjct: 143 EEDEDEDDSEEEKPVRSNSRKRKVEKIIAEKSPRASSSTVGGIQEMLKEFLQQQQKMEMQ 202

Query: 199 WRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLT 258
           WR+MMERR+ ERQ+FE+EWRQ MEKLERERL++EQAWRE+EEQRRIREESRAERRDALLT
Sbjct: 203 WREMMERRSHERQMFEQEWRQSMEKLERERLMIEQAWREREEQRRIREESRAERRDALLT 262

Query: 259 TLLTKLINQNN 269
           TLL KLI +NN
Sbjct: 263 TLLNKLIRENN 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356495258|ref|XP_003516496.1| PREDICTED: trihelix transcription factor GT-3b-like [Glycine max] Back     alignment and taxonomy information
>gi|359474775|ref|XP_002266735.2| PREDICTED: trihelix transcription factor GT-3b-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|151303117|gb|ABR92761.1| transcription factor TF2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255557715|ref|XP_002519887.1| transcription factor, putative [Ricinus communis] gi|223540933|gb|EEF42491.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357484569|ref|XP_003612572.1| Zinc finger and SCAN domain-containing protein [Medicago truncatula] gi|355513907|gb|AES95530.1| Zinc finger and SCAN domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224074567|ref|XP_002304391.1| predicted protein [Populus trichocarpa] gi|222841823|gb|EEE79370.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242077054|ref|XP_002448463.1| hypothetical protein SORBIDRAFT_06g027540 [Sorghum bicolor] gi|241939646|gb|EES12791.1| hypothetical protein SORBIDRAFT_06g027540 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|296085506|emb|CBI29238.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|293333569|ref|NP_001170467.1| uncharacterized protein LOC100384464 [Zea mays] gi|224036047|gb|ACN37099.1| unknown [Zea mays] gi|413919419|gb|AFW59351.1| hypothetical protein ZEAMMB73_306264 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2042847289 AT2G38250 [Arabidopsis thalian 0.885 0.826 0.362 1.7e-36
TAIR|locus:2179192323 AT5G01380 [Arabidopsis thalian 0.929 0.777 0.308 8.8e-31
TAIR|locus:2092130372 AT3G25990 [Arabidopsis thalian 0.351 0.255 0.363 5.1e-13
TAIR|locus:2009897406 GT-1 "GT-1" [Arabidopsis thali 0.351 0.233 0.333 1.7e-11
UNIPROTKB|F1SI60 848 ZSCAN29 "Uncharacterized prote 0.314 0.100 0.393 5.8e-11
UNIPROTKB|C9K0J8556 ZSCAN29 "Zinc finger and SCAN 0.314 0.152 0.382 1.8e-10
UNIPROTKB|E2RSU4 645 ZSCAN29 "Uncharacterized prote 0.314 0.131 0.382 2.2e-10
UNIPROTKB|Q8IWY8 852 ZSCAN29 "Zinc finger and SCAN 0.314 0.099 0.382 3.3e-10
UNIPROTKB|E2RSS0 853 ZSCAN29 "Uncharacterized prote 0.314 0.099 0.382 3.3e-10
UNIPROTKB|E2RK22 1043 ZSCAN20 "Uncharacterized prote 0.333 0.086 0.340 1.4e-09
TAIR|locus:2042847 AT2G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 92/254 (36%), Positives = 133/254 (52%)

Query:    15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74
             QW  EET++LI IRGE ++  +  KRNK +WE++S K+R++ + R+P+QCKCKWKNLV R
Sbjct:    41 QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTR 100

Query:    75 YKGKETSDPDSGRQ-CPFFNELHAVFTERAKNMQRLL-AESEAGS--MQAKKRFKRLNAX 130
             +KG ET + ++ RQ  PF++++  +FT R   MQR+L AESE G        R KR  + 
Sbjct:   101 FKGCETMEAETARQQFPFYDDMQNIFTTR---MQRMLWAESEGGGGGTSGAAR-KREYSS 156

Query:   131 XXXXXXXXXXXXXXXXXXXXXRPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFD 190
                                   P +  ++KRK   N S+ +        G+ E+L+ F  
Sbjct:   157 DEEEENVNEELVDVSNDPKILNPKKNIAKKRKGGSNSSNSNN-------GVREVLEEFMR 209

Query:   191 QQQRMEVEWXXXXXXXXXXXXLFEEEWRQRMEKLERERLLVEQAWXXXXXXXXXXXXXXX 250
              Q RME EW              EEEWR++ME+LE+ERL +E+ W               
Sbjct:   210 HQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKERLAMERMWRDREEQRRSREEMRA 269

Query:   251 XXXDALLTTLLTKL 264
                D+L+  LL KL
Sbjct:   270 EKRDSLINALLAKL 283
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005730 "nucleolus" evidence=IDA
GO:0016592 "mediator complex" evidence=IDA
GO:0010200 "response to chitin" evidence=RCA
TAIR|locus:2179192 AT5G01380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092130 AT3G25990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009897 GT-1 "GT-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI60 ZSCAN29 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|C9K0J8 ZSCAN29 "Zinc finger and SCAN domain-containing protein 29" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSU4 ZSCAN29 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IWY8 ZSCAN29 "Zinc finger and SCAN domain-containing protein 29" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSS0 ZSCAN29 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RK22 ZSCAN20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80450TGT3B_ARATHNo assigned EC number0.39110.91110.8512yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 2e-19
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 1e-17
PRK13831 432 PRK13831, PRK13831, conjugal transfer protein TrbI 0.002
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.004
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 14 VQWGNEETRDLIVIRGET--ERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71
           +W +EETR LI I GE        G KRNK +WE ++ K+ ERGY+R+ +QCK KWKNL
Sbjct: 2  NKWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAERGYNRSAEQCKEKWKNL 61

Query: 72 VNRYKGKETSDPDSGRQCPFFNE 94
            +YK ++ S+  SG   PFF E
Sbjct: 62 KKKYKKEKESNKGSGSSWPFFEE 84

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
KOG4282345 consensus Transcription factor GT-2 and related pr 99.92
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.87
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.35
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.0
smart0059589 MADF subfamily of SANT domain. 97.95
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 97.67
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.61
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.25
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.19
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.96
PLN03212249 Transcription repressor MYB5; Provisional 94.89
PLN03091 459 hypothetical protein; Provisional 92.46
PLN03212249 Transcription repressor MYB5; Provisional 91.51
PLN03091 459 hypothetical protein; Provisional 90.12
KOG1279506 consensus Chromatin remodeling factor subunit and 88.76
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 87.56
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 87.52
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 84.21
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 81.42
KOG0051607 consensus RNA polymerase I termination factor, Myb 80.39
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=99.92  E-value=9.2e-24  Score=199.28  Aligned_cols=230  Identities=29%  Similarity=0.442  Sum_probs=149.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCC--CCCCCCC
Q 024274           13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDP--DSGRQCP   90 (270)
Q Consensus        13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~--~~g~~~~   90 (270)
                      .++|+.+||++||.||++++..|..+++|.++|++||++|.+.||.||+.||++||+||+++||+.+.+..  ..+.+|+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~  133 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK  133 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence            49999999999999999999999999999999999999999999999999999999999999999876533  2467999


Q ss_pred             CHHHHHHHhc-Ccc-chhhhhh---hhccc----cc-hh-hhhhhhc---------------cCCCCCCC----------
Q 024274           91 FFNELHAVFT-ERA-KNMQRLL---AESEA----GS-MQ-AKKRFKR---------------LNADELSD----------  134 (270)
Q Consensus        91 fFdeLd~ll~-~~~-~~~~~~~---~e~~~----~~-~~-~~k~~~~---------------~~~~~~S~----------  134 (270)
                      ||.+||+++. ..+ ...+..+   ...+.    ++ .+ .......               .......+          
T Consensus       134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  213 (345)
T KOG4282|consen  134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPVAGSL  213 (345)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCCCcch
Confidence            9999999996 222 0010000   00000    00 00 0000000               00000000          


Q ss_pred             -CC---CcchhhhhhhhHhhhccccccchhhhhhcccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274          135 -EE---DDDEEQSEEEEEEEERPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQER  210 (270)
Q Consensus       135 -~e---~~~~e~~de~~~~~e~~~~~kkrkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~e~~e~~e~er  210 (270)
                       .+   .++.+++.  +  .... ....+++..+         ......++..+++.+++.|+.|+..+..+++.+++++
T Consensus       214 ~~~~~~s~~~~~s~--~--~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  279 (345)
T KOG4282|consen  214 SNDTSSSSSPDDSA--D--SEGG-KSSSRKRRVR---------KDGSKEGIEELMREVARSQERLDEVLERVEEKKEQER  279 (345)
T ss_pred             hhccccccchhccc--c--cccC-CCCCCCcccc---------ccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhh
Confidence             00   00000000  0  0000 1111111111         1112467889999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024274          211 QLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLINQN  268 (270)
Q Consensus       211 ~~~Ee~Wr~~m~~~e~eR~~~e~~~~~re~~~r~re~~~~~~r~~~~~~~l~kl~~~~  268 (270)
                      +.+++.||.+    +.+| .+|       ...+.+++.....++..++.+++.+.+..
T Consensus       280 ~~~~e~~r~~----~~~r-~ke-------~e~~~~~~~~~~~~~i~~i~~~~~~~~~~  325 (345)
T KOG4282|consen  280 MSEEEKWRME----EIER-NKE-------LELARQERIQETQLEIRSIKAIQASRRGS  325 (345)
T ss_pred             hhHHHHHHHH----HHHh-cch-------HHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            9999999966    4444 222       23344456677788888999988886643

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2ebi_A86 Arabidopsis Gt-1 Dna-Binding Domain With T133d Phos 7e-10
2jmw_A86 Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 5e-09
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d Phosphomimetic Mutation Length = 86 Back     alignment and structure 
Iteration: 1

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71
          +A  W  +ETR LI+ R   +      K NK +WE +S K+RE+G+ R+PD C  KW+NL
Sbjct: 3  RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62
Query: 72 VNRYKGKETSDPDSG 86
          +  +K  +  D  +G
Sbjct: 63 LKEFKKAKHHDRGNG 77
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-04
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74
           W  +ETR LI+ R   +      K NK +WE +S K+RE+G+ R+PD C  KW+NL+  
Sbjct: 6  TWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65

Query: 75 YKGKETSDPDSGR-QCPFFNE 94
          +K  +  D  +G  +  ++ E
Sbjct: 66 FKKAKHHDRGNGSAKMSYYKE 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.91
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.91
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.77
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.73
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.46
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.34
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.33
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.31
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.29
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.26
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.2
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.15
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.14
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.98
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 96.95
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 96.88
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 96.85
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 96.84
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 96.74
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.66
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 96.47
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.27
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.18
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 95.08
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.04
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.87
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 95.74
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.61
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.49
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.09
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 94.98
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 94.79
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 94.11
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 93.92
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 93.42
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 93.19
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 91.98
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 92.59
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 92.55
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 91.93
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 91.7
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 90.79
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 86.87
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 84.6
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.91  E-value=1.5e-24  Score=166.18  Aligned_cols=84  Identities=36%  Similarity=0.745  Sum_probs=78.4

Q ss_pred             cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCCCCCC-CC
Q 024274           11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGR-QC   89 (270)
Q Consensus        11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~~~g~-~~   89 (270)
                      .|.++||++||++||.||++++..|..++++..+|+.||..|.++||+|||.||++||+||++.|+++++++..+|. +|
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~~   81 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAKM   81 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            57899999999999999999999999989999999999999999999999999999999999999999988765554 99


Q ss_pred             CCHHH
Q 024274           90 PFFNE   94 (270)
Q Consensus        90 ~fFde   94 (270)
                      |||++
T Consensus        82 ~yf~e   86 (86)
T 2ebi_A           82 SYYKE   86 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCc
Confidence            99975
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.72
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.57
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.56
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.52
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.45
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.38
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.18
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.99
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.88
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.64
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.39
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.35
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 95.85
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.29
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 92.79
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2e-05  Score=52.81  Aligned_cols=49  Identities=18%  Similarity=0.340  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHH
Q 024274           13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVN   73 (270)
Q Consensus        13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~   73 (270)
                      ..+||.+|...|+.+...+-         ..-|..|+..+   ++ .||+.||+.||.||++
T Consensus         2 r~~WT~eED~~L~~~v~~~G---------~~~W~~I~~~~---~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC---------CCCHHHHHhhc---CCCCCCHHHHHHHHHHHHC
Confidence            35899999999999988752         13699998643   33 6999999999999874
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure