Citrus Sinensis ID: 024309
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 269 | ||||||
| 255558964 | 269 | C-4 methyl sterol oxidase, putative [Ric | 1.0 | 1.0 | 0.936 | 1e-147 | |
| 359807568 | 271 | uncharacterized protein LOC100790183 [Gl | 0.996 | 0.988 | 0.899 | 1e-142 | |
| 225449406 | 375 | PREDICTED: methylsterol monooxygenase 2- | 0.996 | 0.714 | 0.891 | 1e-142 | |
| 358248002 | 271 | uncharacterized protein LOC100816716 [Gl | 0.996 | 0.988 | 0.906 | 1e-142 | |
| 224054606 | 269 | predicted protein [Populus trichocarpa] | 0.996 | 0.996 | 0.891 | 1e-142 | |
| 296086185 | 273 | unnamed protein product [Vitis vinifera] | 0.996 | 0.981 | 0.891 | 1e-141 | |
| 27448145 | 269 | putative sterol 4-alpha-methyl-oxidase [ | 0.996 | 0.996 | 0.906 | 1e-141 | |
| 224104381 | 269 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.881 | 1e-141 | |
| 118482421 | 269 | unknown [Populus trichocarpa] gi|1184827 | 1.0 | 1.0 | 0.881 | 1e-141 | |
| 225434810 | 271 | PREDICTED: methylsterol monooxygenase 2- | 0.985 | 0.977 | 0.901 | 1e-140 |
| >gi|255558964|ref|XP_002520505.1| C-4 methyl sterol oxidase, putative [Ricinus communis] gi|223540347|gb|EEF41918.1| C-4 methyl sterol oxidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/269 (93%), Positives = 263/269 (97%)
Query: 1 MASIIESGWRYLITHFSDFQLACLGSFFLHESIFFLAGLPFIYLERAGWLSKYKIQTKNN 60
MAS+IESGW YLITHFSDFQLACLGSFFLHES+FFL+GLPFIY ERAGWLSKYKIQTKNN
Sbjct: 1 MASLIESGWLYLITHFSDFQLACLGSFFLHESVFFLSGLPFIYFERAGWLSKYKIQTKNN 60
Query: 61 SPAAQEKCITRLLLYHFGVNLPVMIFSYPVFKYMGMQSSLPLPSWKVVLSQIIFYFILED 120
SPAAQEKCITRLLLYHFGVNLPVMIFSYPVFKYMGM+SSLPLPSWKVVL+QIIFYFILED
Sbjct: 61 SPAAQEKCITRLLLYHFGVNLPVMIFSYPVFKYMGMRSSLPLPSWKVVLTQIIFYFILED 120
Query: 121 FVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHL 180
FVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATI+GPAITGPHL
Sbjct: 121 FVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHL 180
Query: 181 MTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVY 240
+TLWLWMVLRVLETVEAHCGYHFPWSLSNF+PLYGGADFHDYHHRLLYTKSGNYSSTF+Y
Sbjct: 181 ITLWLWMVLRVLETVEAHCGYHFPWSLSNFMPLYGGADFHDYHHRLLYTKSGNYSSTFIY 240
Query: 241 MDWIFGTDKGYRKLKALKSFGIEDDPKQM 269
MDWIFGTD GYRKLKALKS G+E+ KQM
Sbjct: 241 MDWIFGTDVGYRKLKALKSSGVENGNKQM 269
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807568|ref|NP_001241155.1| uncharacterized protein LOC100790183 [Glycine max] gi|255647038|gb|ACU23987.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|225449406|ref|XP_002282653.1| PREDICTED: methylsterol monooxygenase 2-2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358248002|ref|NP_001240044.1| uncharacterized protein LOC100816716 [Glycine max] gi|255642590|gb|ACU21580.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224054606|ref|XP_002298337.1| predicted protein [Populus trichocarpa] gi|222845595|gb|EEE83142.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|296086185|emb|CBI31626.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|27448145|gb|AAO13795.1|AF352575_1 putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
| >gi|224104381|ref|XP_002313418.1| predicted protein [Populus trichocarpa] gi|222849826|gb|EEE87373.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|118482421|gb|ABK93133.1| unknown [Populus trichocarpa] gi|118482750|gb|ABK93293.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225434810|ref|XP_002282305.1| PREDICTED: methylsterol monooxygenase 2-2 [Vitis vinifera] gi|297746001|emb|CBI16057.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 269 | ||||||
| TAIR|locus:2024982 | 266 | SMO2-1 "sterol 4-alpha-methyl- | 0.985 | 0.996 | 0.854 | 2.4e-131 | |
| TAIR|locus:2043132 | 272 | SMO2-2 "STEROL+4-ALPHA-METHYL- | 0.959 | 0.948 | 0.811 | 7e-125 | |
| DICTYBASE|DDB_G0269788 | 270 | DDB_G0269788 "C-4 methyl stero | 0.933 | 0.929 | 0.435 | 1.9e-58 | |
| DICTYBASE|DDB_G0270946 | 267 | DDB_G0270946 "C-4 methyl stero | 0.907 | 0.913 | 0.437 | 4e-58 | |
| TAIR|locus:2118121 | 298 | SMO1-1 "AT4G12110" [Arabidopsi | 0.933 | 0.842 | 0.440 | 1.1e-57 | |
| TAIR|locus:505006515 | 299 | SMO1-2 "AT4G22756" [Arabidopsi | 0.933 | 0.839 | 0.436 | 2.2e-57 | |
| TAIR|locus:505006514 | 291 | SMO1-3 "AT4G22753" [Arabidopsi | 0.970 | 0.896 | 0.418 | 4.6e-57 | |
| UNIPROTKB|G4N5K4 | 309 | MGG_06133 "C-4 methylsterol ox | 0.903 | 0.786 | 0.408 | 9.2e-52 | |
| MGI|MGI:1913484 | 293 | Sc4mol "sterol-C4-methyl oxida | 0.955 | 0.877 | 0.365 | 1.5e-49 | |
| ASPGD|ASPL0000066139 | 302 | AN6973 [Emericella nidulans (t | 0.814 | 0.725 | 0.408 | 2e-49 |
| TAIR|locus:2024982 SMO2-1 "sterol 4-alpha-methyl-oxidase 2-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
Identities = 229/268 (85%), Positives = 251/268 (93%)
Query: 1 MASIIESGWRYLITHFSDFQLACLGSFFLHESIFFLAGLPFIYLERAGWLSKYKIQTKNN 60
MAS +ESGW+YL+THFSDFQLAC+GSF LHES+FFL+GLPFI+LER G+LSKYKIQTKNN
Sbjct: 1 MASFVESGWQYLVTHFSDFQLACIGSFLLHESVFFLSGLPFIFLERQGFLSKYKIQTKNN 60
Query: 61 SPAAQEKCITRLLLYHFGVNLPVMIFSYPVFKYMGMQSSLPLPSWKVVLSQIIFYFILED 120
+PAAQ KCITRLLLYHF VNLP+M+ SYPVF+ MGM+SS PLPSWK V +QI+FYFI+ED
Sbjct: 61 TPAAQGKCITRLLLYHFSVNLPLMLASYPVFRAMGMRSSFPLPSWKEVSAQILFYFIIED 120
Query: 121 FVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHL 180
FVFYWGHRILH+KWLYK+VHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPA+TGPHL
Sbjct: 121 FVFYWGHRILHSKWLYKNVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPHL 180
Query: 181 MTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVY 240
+TLWLWMVLRVLETVEAHCGYHFPWSLSNF+PLYGGADFHDYHHRLLYTKSGNYSSTFVY
Sbjct: 181 ITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVY 240
Query: 241 MDWIFGTDKGYRKLKALKSFGIEDDPKQ 268
MDWIFGTDKGYR+LK LK G D KQ
Sbjct: 241 MDWIFGTDKGYRRLKTLKENG---DMKQ 265
|
|
| TAIR|locus:2043132 SMO2-2 "STEROL+4-ALPHA-METHYL-OXIDASE+2-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269788 DDB_G0269788 "C-4 methyl sterol oxidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0270946 DDB_G0270946 "C-4 methyl sterol oxidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118121 SMO1-1 "AT4G12110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:505006515 SMO1-2 "AT4G22756" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:505006514 SMO1-3 "AT4G22753" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4N5K4 MGG_06133 "C-4 methylsterol oxidase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| MGI|MGI:1913484 Sc4mol "sterol-C4-methyl oxidase-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000066139 AN6973 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 269 | |||
| COG3000 | 271 | COG3000, ERG3, Sterol desaturase [Lipid metabolism | 6e-26 | |
| pfam04116 | 114 | pfam04116, FA_hydroxylase, Fatty acid hydroxylase | 1e-17 | |
| PLN02869 | 620 | PLN02869, PLN02869, fatty aldehyde decarbonylase | 7e-05 |
| >gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-26
Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 3/170 (1%)
Query: 78 GVNLPVMIFSYPVFKYMGMQSSLPLPSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYK 137
V L +I + Y+ P P + Q++ F+ D +YW HR+LH L
Sbjct: 67 LVLLLALILWALLGGYLPGLGVAPGPLPFAL--QLLLAFLFLDLGYYWAHRLLHRVPLLW 124
Query: 138 HVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEA 197
H VHH P LT+ HP EIL L F ++ + G + + L + + V
Sbjct: 125 AFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGLSPVAVALLFIFLLFWAVLI 184
Query: 198 HCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGT 247
H P L ++ H HH NY T + D +FGT
Sbjct: 185 HSNLDLPLPLGWLRYVFNTPRHHRLHHS-KDPYDKNYGVTLTFWDRLFGT 233
|
Length = 271 |
| >gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 269 | |||
| KOG0873 | 283 | consensus C-4 sterol methyl oxidase [Lipid transpo | 100.0 | |
| KOG0874 | 287 | consensus Sphingolipid hydroxylase [Lipid transpor | 100.0 | |
| COG3000 | 271 | ERG3 Sterol desaturase [Lipid metabolism] | 100.0 | |
| PLN02869 | 620 | fatty aldehyde decarbonylase | 99.98 | |
| KOG0872 | 312 | consensus Sterol C5 desaturase [Lipid transport an | 99.95 | |
| PF04116 | 114 | FA_hydroxylase: Fatty acid hydroxylase superfamily | 99.8 | |
| PLN02434 | 237 | fatty acid hydroxylase | 99.31 | |
| KOG0539 | 240 | consensus Sphingolipid fatty acid hydroxylase [Lip | 98.32 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 98.19 | |
| PLN02601 | 303 | beta-carotene hydroxylase | 98.19 | |
| PF10520 | 178 | Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme | 95.98 | |
| KOG3011 | 293 | consensus Ubiquitin-conjugating enzyme [Posttransl | 86.25 |
| >KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=407.58 Aligned_cols=256 Identities=52% Similarity=1.058 Sum_probs=240.2
Q ss_pred hHHHHHHHHHHhhcC-C-ceehhHHHHHHHHHHHHHhhHHHHHhc---ccccccccccCCCCCCCh-HHHHHHHHHHHHH
Q 024309 3 SIIESGWRYLITHFS-D-FQLACLGSFFLHESIFFLAGLPFIYLE---RAGWLSKYKIQTKNNSPA-AQEKCITRLLLYH 76 (269)
Q Consensus 3 ~~~~~~W~~~~~~~~-~-~~~~~~~~~~~~~~~y~~~~l~f~~~~---~~~~~~~~kiq~~~~~~~-~~~~~i~~~~~~~ 76 (269)
.++|++|+.++++++ | ..+...|+++++.++||+.|++|.++| ++++++|||||++++++. +.++|++.++.||
T Consensus 9 nflq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k~vl~n~ 88 (283)
T KOG0873|consen 9 NFLQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLKVVLLNH 88 (283)
T ss_pred HHHHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999998 4 455567779999999999999999999 499999999999988644 4589999999999
Q ss_pred HhhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhccCCCCCccccccc
Q 024309 77 FGVNLPVMIFSYPVFKYMGMQSSLPLPSWKVVLSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEY 156 (269)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~~lp~~~~~~~~~~~~~l~~D~~~Y~~HRl~H~~~ly~~~H~~HH~~~~p~~~~a~~ 156 (269)
++++.|++.+.+++.++.|.+.+.++|++.+++.|+++++++.|+++||.||++|.+++||.+||+||++++|.+.+|.|
T Consensus 89 ~~v~~p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~Y 168 (283)
T KOG0873|consen 89 FLVVLPLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEY 168 (283)
T ss_pred HHHHhhHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcCcccCCCCccccccccCchhhhHhhcccCCCCccccc
Q 024309 157 AHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSS 236 (269)
Q Consensus 157 ~hp~E~ll~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~~H~~HH~~~~~~~~Nyg~ 236 (269)
+||+|.++.+++++.++++++.|+.+.++|++++.+.++..||||++||.+.+.+|+.+++++||.||..+ .+||++
T Consensus 169 aHp~E~~~lg~~~~~~p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f---~~n~~~ 245 (283)
T KOG0873|consen 169 AHPLEHLFLGLGTVMGPALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVF---IGNFAS 245 (283)
T ss_pred cCHHHHHHcCChhhhhhHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhc---cccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999 999999
Q ss_pred cchhhhhhcCCChhhHHHHHhhhcC
Q 024309 237 TFVYMDWIFGTDKGYRKLKALKSFG 261 (269)
Q Consensus 237 ~~~~wD~lfGT~~~~~~~~~~~~~~ 261 (269)
.|+.|||++||+..+++.++.+++.
T Consensus 246 ~f~~~D~i~GTd~~~~~~k~~~~~~ 270 (283)
T KOG0873|consen 246 VFGYLDRIHGTDSTYRALKELKEAI 270 (283)
T ss_pred hhHHHHHHhccCccHhhhhhHHHHH
Confidence 9999999999999999888766543
|
|
| >KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >COG3000 ERG3 Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PLN02869 fatty aldehyde decarbonylase | Back alignment and domain information |
|---|
| >KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases | Back alignment and domain information |
|---|
| >PLN02434 fatty acid hydroxylase | Back alignment and domain information |
|---|
| >KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN02601 beta-carotene hydroxylase | Back alignment and domain information |
|---|
| >PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1 | Back alignment and domain information |
|---|
| >KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00