Citrus Sinensis ID: 024317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDMEALPNQSGETSTDLLLRHQKRNC
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHccccEEEEcccEEEEEEEcccccccccEEEEEccccEEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEcccEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEcccccccccccccHHHcccccEEEEEEccccEEEEEccccccccccccccccccccccccccHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEcccccccccccEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEcccccccccccccHEEEccccEEEEcccccEEEEEccccEEEEEccccEEEEEEccccccccccccHHHHHccccccEEEEcccccEEEEEccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSsgllledgytvttvidghqleinphsvidrpgssdlivldssrsafytlsfplseESVVKRLagdgvqgysdgepgsarfdkpksfavdmkgniyvadksNHVIRKITNLgvttiagggskkegradgpaqnasfsndfeltFVPHICALLISDHGNQLIRqinlkpedcskssqsgsalGAVSVWVLVSVLSCLVSLVIgfvarpyiirhtgrldpplqhdmealpnqsgetsTDLLLRHQKRNC
Flexible Loop (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQleinphsvidrpGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVqgysdgepgsarfdKPKSFAVDMKGNIyvadksnhvirKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDMEalpnqsgetstdlllrhqkrnc
Low Complexity Region (SEG)
MASHFVYsslaitllsllfslvssglllEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAvsvwvlvsvlsclvslvIGFVARPYIIRHTGRLDPPLQHDMEALPNQSGETSTDLLLRHQKRNC
Disordered region (IsUnstruct)
***HFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRL***********************FAVDMKGNIYVADKSNHVIRKITNLGVTTIA********************NDFELTFVPHICALLISDHGNQLIRQINL*************ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR********************************
Disordered Region (DISOPRED)
**SHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL************************R******
Disordered Region (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAG*************QNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP***********ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDMEALPNQSGETSTDLLLRHQKRNC
Disordered Region (DISPRO)
*ASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT**********************************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPLQHDMEALPNQSGETSTDLLLRHQKRNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224079468	241	predicted protein [Populus trichocarpa]	0.888	0.991	0.669	3e-89
224065156	264	predicted protein [Populus trichocarpa]	0.892	0.909	0.638	3e-85
18395326	261	NHL domain-containing protein [Arabidops	0.947	0.977	0.611	3e-84
147798774	459	hypothetical protein VITISV_022545 [Viti	0.977	0.572	0.592	8e-84
255560013	408	conserved hypothetical protein [Ricinus	0.821	0.541	0.684	2e-81
297850862	398	NHL repeat-containing protein [Arabidops	0.836	0.565	0.602	1e-73
388505270	384	unknown [Medicago truncatula]	0.758	0.531	0.645	2e-72
42571623	400	NHL domain-containing protein [Arabidops	0.836	0.562	0.598	3e-72
225424715	438	PREDICTED: uncharacterized protein LOC10	0.843	0.518	0.584	3e-71
296086532	369	unnamed protein product [Vitis vinifera]	0.843	0.615	0.584	3e-71

>gi|224079468|ref|XP_002305875.1| predicted protein [Populus trichocarpa] gi|222848839|gb|EEE86386.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/245 (66%), Positives = 194/245 (79%), Gaps = 6/245 (2%)

Query: 27  LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRL 85
           +LEDGY VTTV+DGH+L INPH+V  R  SS+++VLDSSRS FYTL FP+S+ SV VKRL
Sbjct: 1   MLEDGYMVTTVLDGHKLNINPHAVQLR--SSEIVVLDSSRSVFYTLPFPISQASVMVKRL 58

Query: 86  AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKK 145
           +G+G  GY DGEPG ARF+KPKSFAVD++GN+YVAD+ NH +RKI+N GVT+   G   +
Sbjct: 59  SGEGKTGYIDGEPGLARFNKPKSFAVDLRGNVYVADQQNHAVRKISNSGVTSTIVGNYSQ 118

Query: 146 EGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGA 205
            GR DGP + A+FS+DFE+ FVP ICALLISDHGNQL+RQI+LKPEDC   SQ  SALGA
Sbjct: 119 TGRQDGPGKTATFSSDFEVLFVPQICALLISDHGNQLLRQIDLKPEDCVIGSQ--SALGA 176

Query: 206 VSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPP-LQHDMEALPNQSGETSTDLLLRH 264
           V  WVL   LSCL+ +VIG   RPY+I HTGRL  P  Q DMEALPNQSGE+STD LLR 
Sbjct: 177 VKFWVLGLALSCLLGIVIGIATRPYVIPHTGRLQTPSFQQDMEALPNQSGESSTDELLRR 236

Query: 265 QKRNC 269
           QKRNC
Sbjct: 237 QKRNC 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065156|ref|XP_002301692.1| predicted protein [Populus trichocarpa] gi|222843418|gb|EEE80965.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/246 (63%), Positives = 190/246 (77%), Gaps = 6/246 (2%)

Query: 26  LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKR 84
           ++LEDGY VTTV+DGH+L +NPH+V  R  SSDL+VLDSS+S FYTL FP+S++ V VKR
Sbjct: 23  IMLEDGYMVTTVMDGHKLNVNPHAVQLR--SSDLVVLDSSKSVFYTLPFPISQDGVMVKR 80

Query: 85  LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSK 144
           L+G G +GY DGEPG ARF+KPKSF VD++GN+YVAD+ NH +RKI++ G+TT   G   
Sbjct: 81  LSGSGDKGYIDGEPGLARFNKPKSFTVDLRGNVYVADQLNHAVRKISSSGMTTTIAGNYS 140

Query: 145 KEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG 204
           + GR DGP + A+FS DFE+ FVP ICALLISDHGNQL+RQ++LK EDC   SQ  SALG
Sbjct: 141 QIGRQDGPGETATFSTDFEVLFVPQICALLISDHGNQLLRQVDLKQEDCIIGSQ--SALG 198

Query: 205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPP-LQHDMEALPNQSGETSTDLLLR 263
           AV  WVL  VLSCL  L  GF  RPY+I HTGR   P  Q DMEALPNQSGE++T+ LLR
Sbjct: 199 AVKFWVLGLVLSCLFGLATGFAIRPYVIPHTGRRQTPSFQQDMEALPNQSGESNTEELLR 258

Query: 264 HQKRNC 269
            QKRNC
Sbjct: 259 RQKRNC 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395326|ref|NP_564209.1| NHL domain-containing protein [Arabidopsis thaliana] gi|15724248|gb|AAL06517.1|AF412064_1 At1g23890/T23E23_13 [Arabidopsis thaliana] gi|16974539|gb|AAL31179.1| At1g23890/T23E23_13 [Arabidopsis thaliana] gi|110742589|dbj|BAE99208.1| hypothetical protein [Arabidopsis thaliana] gi|332192326|gb|AEE30447.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/260 (61%), Positives = 202/260 (77%), Gaps = 5/260 (1%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LE+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  
Sbjct: 64  STFYTTSFPLSVDSVINRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKA 123

Query: 127 IRKITNLG-VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ 185
           IRKI++ G VTTIAGG SK  G  DGPAQNA+FS+DFE+TFVP  C LL+SDHGN++IRQ
Sbjct: 124 IRKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQ 183

Query: 186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL-QH 244
           INLK EDC ++S S   LG  S+W +  VLSC++ + IGF  RPY+IRHTGR +PPL  H
Sbjct: 184 INLKEEDCLENSHSN--LGTYSLWSIGIVLSCILGVAIGFAVRPYVIRHTGRSEPPLVHH 241

Query: 245 DMEALPNQSGETSTDLLLRH 264
           DMEA PNQ G TS+DLLL H
Sbjct: 242 DMEASPNQIGGTSSDLLLLH 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798774|emb|CAN69795.1| hypothetical protein VITISV_022545 [Vitis vinifera]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 163/275 (59%), Positives = 211/275 (76%), Gaps = 12/275 (4%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+  PLS+ES + RL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVXSPLSQESEINRLSGSSA-GFSDGDSASAMFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNLGVTT-IAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI 175
           +YVAD+SN VIRKITN GVTT IAGG ++K G+ DGPAQNASFS DFEL FVP  CA+L+
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 176 SDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSV-LSCLVSLVIGFVARPYIIRH 234
           SD G+QL+RQI+LK EDC +S Q  S LG   +WVL+ + +SCLV  ++G ++RPY+I H
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQ--SVLGGAFLWVLLGLGVSCLVGFIVGIISRPYVIPH 235

Query: 235 TGRLDPPL-QHDMEALPNQSGETSTDLLLRHQKRN 268
           TG L P L Q D+EALPN SGETSTD LLRHQK++
Sbjct: 236 TGSLLPTLFQRDVEALPNPSGETSTDALLRHQKQS 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560013|ref|XP_002521025.1| conserved hypothetical protein [Ricinus communis] gi|223539862|gb|EEF41442.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/225 (68%), Positives = 184/225 (81%), Gaps = 4/225 (1%)

Query: 14  LLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLS 73
           LL L  + V  GL+LEDGYTVTT+IDGH+LEINPH+V+ RP SSDLI+LDSS S  YT+S
Sbjct: 18  LLHLPSNYVLGGLILEDGYTVTTIIDGHKLEINPHAVLSRPQSSDLILLDSSHSTIYTIS 77

Query: 74  FPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL 133
           FP+S+ESVVKRL+GDGV G SDGEPGSARF+KP+SFAVD KGNIYVAD+ N  IRKITN 
Sbjct: 78  FPISQESVVKRLSGDGVAGLSDGEPGSARFNKPRSFAVDNKGNIYVADRLNGTIRKITNS 137

Query: 134 GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC 193
           GV+TIAGG SK  GR DGPAQNA+FS+DFE+ FV   CALLISDHGNQL+R++ LKP+DC
Sbjct: 138 GVSTIAGGYSKGFGREDGPAQNATFSSDFEVAFVAEECALLISDHGNQLVRRLPLKPDDC 197

Query: 194 SKSSQSGSALGAVSVWV--LVSVLSCLVSLVIGFVARPYIIRHTG 236
           + +S   SALGAVS WV  L  V+SCL+ + IGFV RP+I+ + G
Sbjct: 198 ATASH--SALGAVSFWVLGLGLVMSCLIGIAIGFVIRPHIVPYEG 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850862|ref|XP_002893312.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339154|gb|EFH69571.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/229 (60%), Positives = 179/229 (78%), Gaps = 4/229 (1%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LEDGY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEDGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  GY DG+ G++RF KP+ FA+D KGN+YVAD+SN  
Sbjct: 64  STFYTTSFPLSFDSVIHRFAGDGTSGYVDGKAGNSRFKKPRGFAIDAKGNVYVADRSNKA 123

Query: 127 IRKITNLG-VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ 185
           IRKI++ G VTTIAGG SK+ G  DGPAQNA+FS+DFE+TFVP  C LL+SDHGN+++RQ
Sbjct: 124 IRKISSSGYVTTIAGGISKEFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMVRQ 183

Query: 186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH 234
           INLK EDC +SS S   LGA S+W +   LSC++ + IGF  RPYIIRH
Sbjct: 184 INLKEEDCLESSHSN--LGAYSLWSIGIFLSCILGVAIGFAVRPYIIRH 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505270|gb|AFK40701.1| unknown [Medicago truncatula]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 162/206 (78%), Gaps = 2/206 (0%)

Query: 29  EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD 88
           E+GYT+TT++DGH+L INP S++ RP SSDLIVLDS+ S FYT+  P+S+ESV KR +G+
Sbjct: 31  EEGYTITTILDGHKLHINPFSILQRPISSDLIVLDSTNSTFYTVQLPISQESVFKRFSGN 90

Query: 89  GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGR 148
           G  GY DG+ G ARFDKP+SFAVD +GN+YVAD+ N VIRKI+  GVTTIAGG S+K   
Sbjct: 91  GSPGYEDGDVGLARFDKPRSFAVDFRGNVYVADRVNKVIRKISTNGVTTIAGGSSEKSSI 150

Query: 149 ADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSV 208
            DGP QNASFSNDFELTF+P +CALL+SDH +QL+ QINLK EDC+  S+  SALGAV  
Sbjct: 151 KDGPVQNASFSNDFELTFIPALCALLVSDHMHQLVHQINLKGEDCTLGSK--SALGAVMT 208

Query: 209 WVLVSVLSCLVSLVIGFVARPYIIRH 234
           W L   LSC++ LVIG V RPYII H
Sbjct: 209 WTLGLGLSCILGLVIGIVIRPYIIPH 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571623|ref|NP_973902.1| NHL domain-containing protein [Arabidopsis thaliana] gi|332192325|gb|AEE30446.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 178/229 (77%), Gaps = 4/229 (1%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LE+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  
Sbjct: 64  STFYTTSFPLSVDSVINRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKA 123

Query: 127 IRKITNLG-VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ 185
           IRKI++ G VTTIAGG SK  G  DGPAQNA+FS+DFE+TFVP  C LL+SDHGN++IRQ
Sbjct: 124 IRKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQ 183

Query: 186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH 234
           INLK EDC ++S S   LG  S+W +  VLSC++ + IGF  RPY+IRH
Sbjct: 184 INLKEEDCLENSHSN--LGTYSLWSIGIVLSCILGVAIGFAVRPYVIRH 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424715|ref|XP_002265272.1| PREDICTED: uncharacterized protein LOC100243227 [Vitis vinifera]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 184/238 (77%), Gaps = 11/238 (4%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+S PLS+ES +KRL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVSSPLSQESEIKRLSGSSA-GFSDGDSASATFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI 175
           +YVAD+SN VIRKITN GV TTIAGG ++K G+ DGPAQNASFS DFEL FVP  CA+L+
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 176 SDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSV-LSCLVSLVIGFVARPYII 232
           SD G+QL+RQI+LK EDC +S Q  S LG   +WVL+ + +SCLV  ++G ++RPY+I
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQ--SVLGGAFLWVLLGLGVSCLVGFIVGIISRPYVI 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086532|emb|CBI32121.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 184/238 (77%), Gaps = 11/238 (4%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+S PLS+ES +KRL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVSSPLSQESEIKRLSGSSA-GFSDGDSASATFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI 175
           +YVAD+SN VIRKITN GV TTIAGG ++K G+ DGPAQNASFS DFEL FVP  CA+L+
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 176 SDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSV-LSCLVSLVIGFVARPYII 232
           SD G+QL+RQI+LK EDC +S Q  S LG   +WVL+ + +SCLV  ++G ++RPY+I
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQ--SVLGGAFLWVLLGLGVSCLVGFIVGIISRPYVI 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.758	0.51	0.594	5.5e-61
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.650	0.321	0.452	3.4e-34
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.650	0.343	0.446	5.8e-34
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.643	0.350	0.421	8.5e-33
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.639	0.228	0.423	8.3e-31
TAIR|locus:2010728	1055	AT1G56500 [Arabidopsis thalian	0.397	0.101	0.289	8.8e-05

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 123/207 (59%), Positives = 150/207 (72%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD 88
             E+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS S FYT SFPLS +SV+ R AGD
Sbjct:    26 EEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGD 85

Query:    89 GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGSKKEG 147
             G  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  IRKI++ G VTTIAGG SK  G
Sbjct:    86 GSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGGISKAFG 145

Query:   148 RADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAXX 207
               DGPAQNA+FS+DFE+TFVP  C LL+SDHGN++IRQINLK EDC ++S S   LG   
Sbjct:   146 HRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHSN--LGTYS 203

Query:   208 XXXXXXXXXXXXXXXIGFVARPYIIRH 234
                            IGF  RPY+IRH
Sbjct:   204 LWSIGIVLSCILGVAIGFAVRPYVIRH 230

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 3.4e-34, P = 3.4e-34
 Identities = 81/179 (45%), Positives = 112/179 (62%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E+GY+V TV+DG +L I P+S I    + +L++LDS  S  Y +S  LS  S  + + G 
Sbjct:   129 ENGYSVETVLDGSKLGIEPYS-IQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGS 187

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKE 146
              +G  G+ DG    AR + PK   VD +GNIYVAD  N+ IRKI+  GVTTIAGG   + 
Sbjct:   188 PEGYPGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKMVRG 247

Query:   147 G-RADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG 204
             G   DGP+++A FSNDF++ ++   C+LL+ D GNQ IR+I L  +DC+    SG  LG
Sbjct:   248 GGHVDGPSEDAKFSNDFDVVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFPLG 306

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 80/179 (44%), Positives = 113/179 (63%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E+GY+V TV DG +L I P+S+   P + +L++LDS  S  Y +S  LS  S  + + G 
Sbjct:    67 ENGYSVETVFDGSKLGIEPYSIEVLP-NGELLILDSENSNIYKISSSLSLYSRPRLVTGS 125

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKE 146
              +G  G+ DG    A+ + PK   VD +GNIYVAD  N+ IRKI+  GVTTIAGG + + 
Sbjct:   126 PEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKTVRN 185

Query:   147 G-RADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG 204
             G   DGP+++A FSNDF++ +V   C+LL+ D GN+ IR+I L  +DC+    SG  LG
Sbjct:   186 GGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFPLG 244

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 75/178 (42%), Positives = 110/178 (61%)

Query:    29 EDGYTVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG 87
             E+GY V TV++G+ + + P+ + +   G  +L  +D   S    ++ PLS+ S  + +AG
Sbjct:    74 ENGYLVETVVEGNDIGVVPYKIRVSDDG--ELYAVDELNSNIMKITPPLSQYSRGRLVAG 131

Query:    88 D--GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKK 145
                G  G++DG+P  ARF+ P+   +D KGN+YVAD  N  IRKI + GVTTIAGG S  
Sbjct:   132 SFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNI 191

Query:   146 EGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL 203
              G  DGP+++A FSNDF++ +V   C+LL+ D GN  +RQI+L  EDC     S  +L
Sbjct:   192 AGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISL 249

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 8.3e-31, P = 8.3e-31
 Identities = 75/177 (42%), Positives = 107/177 (60%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E GY + TV DG +L I P+++   P   +LIVLDS  S  + +S PLS     K L+G 
Sbjct:    75 ESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGS 134

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKE 146
              +G  G+ DG+   AR ++P+  A+D +GNIYVAD  N  IRKI++ GV+TIA GG    
Sbjct:   135 QEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKISDDGVSTIAAGGRWSG 194

Query:   147 GRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL 203
             G  +   ++  FS+DF+L +V   C+LL+ D GNQLI++I L   DCS+      +L
Sbjct:   195 GSKE---ESMRFSDDFDLIYVSSSCSLLVIDRGNQLIKEIQLHDHDCSQPEPDTDSL 248

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 33/114 (28%), Positives = 54/114 (47%)

Query:    59 LIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI- 117
             L + DS+ +          E + + ++   G +G+ DG    A F++P+  A + K N+ 
Sbjct:   581 LFISDSNHNRIIVTDL---EGNFIVQIGSSGEEGFQDGSFEDAAFNRPQGLAYNAKKNLL 637

Query:   118 YVADKSNHVIRKI--TNLGVTTIAGGGSKKEGRADGPAQNASFSND-FELTFVP 168
             YVAD  NH +R+I   N  V T+AG G+K      G        N  +++ F P
Sbjct:   638 YVADTENHALREIDFVNERVQTLAGNGTKGSDYQGGRKGTKQLLNSPWDVCFEP 691


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      269       231   0.00084  113 3  11 22  0.45    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  158 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.62u 0.16s 19.78t   Elapsed:  00:00:01
  Total cpu time:  19.62u 0.16s 19.78t   Elapsed:  00:00:01
  Start:  Fri May 10 00:05:10 2013   End:  Fri May 10 00:05:11 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	2e-08
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	3e-06
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	2e-04

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 92  GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI--TNLGVTTIAGGGSKKEGRA 149
           G  DG         P        G IYVAD  NH I+K+      VTT+AG G  K G  
Sbjct: 792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG--KAGFK 849

Query: 150 DGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK 195
           DG A  A  S    L    +   L ++D  N LIR ++L   + ++
Sbjct: 850 DGKALKAQLSEPAGLALGEN-GRLFVADTNNSLIRYLDLNKGEAAE 894

Length = 1057

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 84  RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI-YVADKSNHVIRKI--TNLGVTTIAG 140
           ++   G +G  DG    A F++P+  A + K N+ YVAD  NH +R+I   N  V T+AG
Sbjct: 604 QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAG 663

Query: 141 GGSK 144
            G+K
Sbjct: 664 NGTK 667

Length = 1057

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 82  VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
           V  LAG G  G+ DG+   A+  +P   A+   G ++VAD +N +IR
Sbjct: 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883

Length = 1057

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.87
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.57
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.44
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.37
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	99.22
COG3391	381	Uncharacterized conserved protein [Function unknow	99.21
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.21
COG3391	381	Uncharacterized conserved protein [Function unknow	99.21
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.12
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.1
PRK11028	330	6-phosphogluconolactonase; Provisional	99.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.02
PRK11028	330	6-phosphogluconolactonase; Provisional	99.02
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.01
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.99
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.87
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.79
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.66
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.66
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.6
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.58
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.28
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.22
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.15
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.93
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.89
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.84
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.79
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.77
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.74
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.72
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.72
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.55
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.5
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.48
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.46
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.43
COG3211	616	PhoX Predicted phosphatase [General function predi	97.41
PRK02888	635	nitrous-oxide reductase; Validated	97.23
PRK02888	635	nitrous-oxide reductase; Validated	97.15
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.1
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	97.01
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.86
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.84
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.81
KOG1215	877	consensus Low-density lipoprotein receptors contai	96.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.68
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	96.57
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.57
COG3211	616	PhoX Predicted phosphatase [General function predi	96.46
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.45
KOG0266	456	consensus WD40 repeat-containing protein [General	96.42
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.4
KOG1215	877	consensus Low-density lipoprotein receptors contai	96.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.24
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	96.19
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.06
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	95.83
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.82
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.63
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	95.59
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.06
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.89
KOG0266	456	consensus WD40 repeat-containing protein [General	94.76
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.46
KOG0282	503	consensus mRNA splicing factor [Function unknown]	94.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.27
KOG0279	315	consensus G protein beta subunit-like protein [Sig	93.84
PRK05137	435	tolB translocation protein TolB; Provisional	93.78
KOG0286	343	consensus G-protein beta subunit [General function	93.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	93.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	93.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.34
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	93.12
PRK04792	448	tolB translocation protein TolB; Provisional	93.09
KOG0263	707	consensus Transcription initiation factor TFIID, s	93.04
PTZ00421	493	coronin; Provisional	92.98
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	92.8
KOG0283	712	consensus WD40 repeat-containing protein [Function	92.78
KOG0318	603	consensus WD40 repeat stress protein/actin interac	92.76
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	92.75
PRK04922	433	tolB translocation protein TolB; Provisional	92.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.31
PRK01742	429	tolB translocation protein TolB; Provisional	92.21
PRK04792	448	tolB translocation protein TolB; Provisional	92.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	91.92
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	91.91
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	91.23
KOG0772	641	consensus Uncharacterized conserved protein, conta	91.14
PRK02889	427	tolB translocation protein TolB; Provisional	90.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.66
KOG0308	735	consensus Conserved WD40 repeat-containing protein	90.65
KOG0282	503	consensus mRNA splicing factor [Function unknown]	90.44
PRK03629	429	tolB translocation protein TolB; Provisional	90.39
KOG0293	519	consensus WD40 repeat-containing protein [Function	90.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.25
KOG0263	707	consensus Transcription initiation factor TFIID, s	90.16
PRK04922	433	tolB translocation protein TolB; Provisional	90.11
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	89.96
PRK02889	427	tolB translocation protein TolB; Provisional	89.91
KOG0286	343	consensus G-protein beta subunit [General function	89.66
KOG0283	712	consensus WD40 repeat-containing protein [Function	89.35
PTZ00420	568	coronin; Provisional	89.24
KOG0315	311	consensus G-protein beta subunit-like protein (con	89.15
KOG0315	311	consensus G-protein beta subunit-like protein (con	88.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	88.89
PRK03629	429	tolB translocation protein TolB; Provisional	88.74
smart00284	255	OLF Olfactomedin-like domains.	88.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	88.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	87.39
KOG3950	292	consensus Gamma/delta sarcoglycan [Cytoskeleton]	87.19
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	86.97
PRK05137	435	tolB translocation protein TolB; Provisional	86.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	86.7
KOG1274	933	consensus WD40 repeat protein [General function pr	86.67
KOG0279	315	consensus G protein beta subunit-like protein [Sig	86.47
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.34
PRK01742	429	tolB translocation protein TolB; Provisional	86.24
KOG0640	430	consensus mRNA cleavage stimulating factor complex	85.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	85.75
KOG0289	506	consensus mRNA splicing factor [General function p	85.35
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.16
PLN00181	793	protein SPA1-RELATED; Provisional	85.11
KOG0278	334	consensus Serine/threonine kinase receptor-associa	84.11
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	83.94
KOG3881	412	consensus Uncharacterized conserved protein [Funct	83.7
KOG1274	933	consensus WD40 repeat protein [General function pr	83.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	83.12
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.03
KOG2055	514	consensus WD40 repeat protein [General function pr	82.8
KOG1539	910	consensus WD repeat protein [General function pred	82.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	82.73
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	82.08
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.46
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	81.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	81.37
PTZ00421	493	coronin; Provisional	81.25
PRK00178	430	tolB translocation protein TolB; Provisional	80.71

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.90  E-value=7.4e-22  Score=199.64  Aligned_cols=197  Identities=20%  Similarity=0.254  Sum_probs=147.9

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC-CcccCCCCCcccccCCCCceEEEcCCCC-EEE
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV  119 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~-g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV  119 (269)
                      ..|..|.+|+++..++++||+|+++|||+++|    .+|.+...++. |..|..+|....+.|+.|.||++|++++ |||
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d----~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTD----LDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEe----CCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence            35789999999766799999999999999995    46776666665 6667777777778999999999999876 999


Q ss_pred             EeCCCCEEEEEeCCc-c-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          120 ADKSNHVIRKITNLG-V-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       120 aD~~n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      +|..|++|++++..+ . .++++.+..+....++ ......|+.|++|+++++++.|||+|.++++|++++.....+..+
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~  720 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF  720 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            999999999999754 4 7888765544333222 122345899999999997799999999999999999988776655


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCccccc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLDPPL  242 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~~~~  242 (269)
                      ...+..............+..|.||+++++|. |||+|. +++++..+
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D  768 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD  768 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            43321111000011122567899999999985 999994 46665444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=2.5e-20  Score=188.65  Aligned_cols=189  Identities=18%  Similarity=0.290  Sum_probs=140.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCC-cccccCCCCceEEEcCCCC-EEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGE-PGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~-~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ++.|++|++++.++.+||+|.++|+|+++|.   .+|.+.++.|.|.....++. .....|..|.||+++++|. |||+|
T Consensus       682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~---~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD  758 (1057)
T PLN02919        682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI---SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD  758 (1057)
T ss_pred             cCCCeEEEEecCCCeEEEEECCCCeEEEEEC---CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence            7899999998768999999999999999984   57788888876643322332 2345789999999999987 99999


Q ss_pred             CCCCEEEEEeCCc-c-eEEecCCC------CCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          122 KSNHVIRKITNLG-V-TTIAGGGS------KKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       122 ~~n~~I~~~~~~g-~-~~~~g~~~------~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ..+++|++++.+. . ..+++...      ..++..++....+.|..|.||+++++ |+|||+|..|++|++|+.++..+
T Consensus       759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v  837 (1057)
T PLN02919        759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeE
Confidence            9999999999764 3 44443211      12233344445567899999999997 88999999999999999988766


Q ss_pred             EEecccC---ccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317          194 SKSSQSG---SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP  240 (269)
Q Consensus       194 ~~~~~~g---~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~  240 (269)
                      ......|   +..|.    .....+..|.||+++++|++||+|. +++++.
T Consensus       838 ~tiaG~G~~G~~dG~----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        838 TTLAGTGKAGFKDGK----ALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             EEEeccCCcCCCCCc----ccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            5544332   11111    1223568899999999999999994 455443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.80  E-value=3.2e-18  Score=166.92  Aligned_cols=213  Identities=20%  Similarity=0.217  Sum_probs=161.8

Q ss_pred             eecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCC--CCCccEEEEEcCCc------ccCCCCC
Q 024317           26 LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--SEESVVKRLAGDGV------QGYSDGE   97 (269)
Q Consensus        26 ~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~--~~~g~~~~~~g~g~------~g~~dg~   97 (269)
                      .++++|+..+.+.-+...-.+-+-||++|-+|.|||+|..+++|+++..-.  +..+...+++|.|.      ..++||.
T Consensus       388 RI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGa  467 (1899)
T KOG4659|consen  388 RISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGA  467 (1899)
T ss_pred             eecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcch
Confidence            466777777766544444556788999999999999999999999996311  34567889999886      3366765


Q ss_pred             c-ccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCC--CCCCC--ccccccccCceEEEEeCCCC
Q 024317           98 P-GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKE--GRADG--PAQNASFSNDFELTFVPHIC  171 (269)
Q Consensus        98 ~-~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~--~~~~~--~~~~~~l~~P~gia~~~~~g  171 (269)
                      . ..++|.+|.||++|++|+||++|.  .+|+++|.+|. +++.|......  -.+++  ...+-+|.+|+.||++|-.+
T Consensus       468 lA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdn  545 (1899)
T KOG4659|consen  468 LAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDN  545 (1899)
T ss_pred             hcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCC
Confidence            4 479999999999999999999995  59999999999 88888643321  11222  34456789999999999889


Q ss_pred             EEEEEECCCCeEEEEECCCCeEEEecccCc--cCC---CcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          172 ALLISDHGNQLIRQINLKPEDCSKSSQSGS--ALG---AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       172 ~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~--~~g---~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                      .|||.|  ++.|++++.+.......+.+-.  ..+   .....+.+..+..+..|++..+|.|||++.+++.....
T Consensus       546 sl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrv  619 (1899)
T KOG4659|consen  546 SLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRV  619 (1899)
T ss_pred             eEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhhe
Confidence            999999  4899999999988866664410  001   11123455667788999999999999999887666555

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.70  E-value=7.4e-16  Score=132.64  Aligned_cols=166  Identities=22%  Similarity=0.234  Sum_probs=112.7

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN-  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n-  124 (269)
                      .|.|+++...++.+||++....+++  |+   .++++..+...-.        ....+..|+++++|++|+|||+|... 
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~~~~~~--d~---~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~~G~ly~t~~~~~  107 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSGGIAVV--DP---DTGKVTVLADLPD--------GGVPFNRPNDVAVDPDGNLYVTDSGGG  107 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETTCEEEE--ET---TTTEEEEEEEEET--------TCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred             CCceEEEEccCCEEEEEEcCceEEE--ec---CCCcEEEEeeccC--------CCcccCCCceEEEcCCCCEEEEecCCC
Confidence            3888888635788899986554444  53   4666666653200        11257899999999999999999754 


Q ss_pred             -------CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe--EE
Q 024317          125 -------HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED--CS  194 (269)
Q Consensus       125 -------~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~--~~  194 (269)
                             ++|.+++++++ ..+..                .+..|+||++++++..|||+|+.+++|++++.+...  ..
T Consensus       108 ~~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~  171 (246)
T PF08450_consen  108 GASGIDPGSVYRIDPDGKVTVVAD----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS  171 (246)
T ss_dssp             CTTCGGSEEEEEEETTSEEEEEEE----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred             ccccccccceEEECCCCeEEEEec----------------CcccccceEECCcchheeecccccceeEEEecccccccee
Confidence                   57999999977 44432                278899999999977899999999999999986432  21


Q ss_pred             ---EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc-c-cccccccCC
Q 024317          195 ---KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL-Q-HDMEALPNQ  252 (269)
Q Consensus       195 ---~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~-~-~~~~~~~~~  252 (269)
                         .+...  . +         ....|.|+++|.+|+|||++. .++++... + .....++.|
T Consensus       172 ~~~~~~~~--~-~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  172 NRRVFIDF--P-G---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEEEEE---S-S---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred             eeeeEEEc--C-C---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence               11111  0 1         113599999999999999994 66666555 2 233444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=1.4e-13  Score=118.43  Aligned_cols=143  Identities=17%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCC--------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSR--------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK  114 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~--------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~  114 (269)
                      .+..|.+++++ .+|++||+|...        ++|++++    .++++....              ..+..|+||+++++
T Consensus        84 ~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~----~~~~~~~~~--------------~~~~~pNGi~~s~d  144 (246)
T PF08450_consen   84 PFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRID----PDGKVTVVA--------------DGLGFPNGIAFSPD  144 (246)
T ss_dssp             CTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEE----TTSEEEEEE--------------EEESSEEEEEEETT
T ss_pred             ccCCCceEEEc-CCCCEEEEecCCCccccccccceEEEC----CCCeEEEEe--------------cCcccccceEECCc
Confidence            67899999996 589999999755        5688885    446666654              24779999999999


Q ss_pred             CC-EEEEeCCCCEEEEEeCCcc-------eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          115 GN-IYVADKSNHVIRKITNLGV-------TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       115 G~-lyVaD~~n~~I~~~~~~g~-------~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      |+ |||+|+.+++|++++.+..       ..++....             ....|.|+++|.+ |+|||++..+++|+++
T Consensus       145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~~g~pDG~~vD~~-G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-------------GPGYPDGLAVDSD-GNLWVADWGGGRIVVF  210 (246)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-------------SSCEEEEEEEBTT-S-EEEEEETTTEEEEE
T ss_pred             chheeecccccceeEEEeccccccceeeeeeEEEcCC-------------CCcCCCcceEcCC-CCEEEEEcCCCEEEEE
Confidence            97 9999999999999986421       22222110             1235999999987 9999999999999999


Q ss_pred             ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEe-cC-CcEEEEc
Q 024317          187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIG-FV-ARPYIIR  233 (269)
Q Consensus       187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d-~~-g~lyVad  233 (269)
                      +++|..+.....+               ...|..+|+. ++ ..|||+.
T Consensus       211 ~p~G~~~~~i~~p---------------~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  211 DPDGKLLREIELP---------------VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ETTSCEEEEEE-S---------------SSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCccEEEEEcCC---------------CCCEEEEEEECCCCCEEEEEe
Confidence            9998876655433               1458889994 34 5899985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.57  E-value=7.3e-14  Score=137.01  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCC----CCC--cccccCCCCceEEEcC-C
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS----DGE--PGSARFDKPKSFAVDM-K  114 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~----dg~--~~~~~~~~P~giavd~-~  114 (269)
                      ..+.+|.||+++ +.|.+|++|  ..+|.++    +.+|.+.+++|.-.-...    ++.  ..+.++.+|..+|++| +
T Consensus       472 A~L~~PkGIa~d-k~g~lYfaD--~t~IR~i----D~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmd  544 (1899)
T KOG4659|consen  472 AQLIFPKGIAFD-KMGNLYFAD--GTRIRVI----DTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMD  544 (1899)
T ss_pred             ceeccCCceeEc-cCCcEEEec--ccEEEEe----ccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCC
Confidence            368899999995 899999999  5789999    689999999986321111    121  2457899999999999 7


Q ss_pred             CCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCC------CccccccccCceEEEEeCCCCEEEEEECCCC---eEE
Q 024317          115 GNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRAD------GPAQNASFSNDFELTFVPHICALLISDHGNQ---LIR  184 (269)
Q Consensus       115 G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~------~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~---~I~  184 (269)
                      +.|||.|  +|.|.++++++. ..++|++.- |..++      ..+.-..+..|..|++.++ |.|||+++...   ||+
T Consensus       545 nsl~Vld--~nvvlrit~~~rV~Ii~GrP~h-C~~a~~t~~~skla~H~tl~~~r~Iavg~~-G~lyvaEsD~rriNrvr  620 (1899)
T KOG4659|consen  545 NSLLVLD--TNVVLRITVVHRVRIILGRPTH-CDLANATSSASKLADHRTLLIQRDIAVGTD-GALYVAESDGRRINRVR  620 (1899)
T ss_pred             CeEEEee--cceEEEEccCccEEEEcCCccc-cccCCCchhhhhhhhhhhhhhhhceeecCC-ceEEEEeccchhhhheE
Confidence            7799999  789999999999 777776543 22221      1222335677899999998 99999999765   567


Q ss_pred             EEECCCCeEEEecccCccC----------CCcccceeeeeccceeeEEEecCCcEEEEcCC-CCcccc
Q 024317          185 QINLKPEDCSKSSQSGSAL----------GAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-GRLDPP  241 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~----------g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-g~~~~~  241 (269)
                      ++..+|.+....+....=.          ......+..+.+..|..+|+.++|.+||||.. -|++.-
T Consensus       621 ~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V  688 (1899)
T KOG4659|consen  621 KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV  688 (1899)
T ss_pred             EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence            8888886665555331100          11222245567899999999999999999954 444433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.1e-11  Score=109.74  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=110.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc--------------------c--cCCCCCc------
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV--------------------Q--GYSDGEP------   98 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~--------------------~--g~~dg~~------   98 (269)
                      .+|..+++..+.||++|..+++|++++.   .+|....+.-.+.                    .  ....+..      
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~---~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHRLDP---ETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEEecC---CcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEecc
Confidence            4444456777889999999999999974   2354444332110                    0  0011111      


Q ss_pred             --ccccCCCCceEEEcCCCCEEEEeCC-----------CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEE
Q 024317           99 --GSARFDKPKSFAVDMKGNIYVADKS-----------NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFEL  164 (269)
Q Consensus        99 --~~~~~~~P~giavd~~G~lyVaD~~-----------n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gi  164 (269)
                        ...+.++|++..++++|.+||+|..           ..+++++++.|. ..+...               .+..||||
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~---------------~~~~~NGl  168 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD---------------DLTIPNGL  168 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC---------------cEEecCce
Confidence              1345789999999999999999987           246888888776 444321               27789999


Q ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          165 TFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       165 a~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      |++|++..+|++|+..++|++++.+.....       ..+..........-..|.|+++|.+|++|++...
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~  232 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW  232 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence            999997799999999999999998741110       0011101111112366999999999999976644

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.37  E-value=8.2e-11  Score=107.33  Aligned_cols=161  Identities=16%  Similarity=0.120  Sum_probs=108.3

Q ss_pred             CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCC------------CCEEEEEecCCCCCccE---EEEEcCCcccCCC
Q 024317           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS------------RSAFYTLSFPLSEESVV---KRLAGDGVQGYSD   95 (269)
Q Consensus        31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~------------~~~I~~~dl~~~~~g~~---~~~~g~g~~g~~d   95 (269)
                      |+.++.+++.+ .+..|.+|+++ .+|+|||++..            ..||++++.. +.+|+.   +.++         
T Consensus         1 Gf~~~l~A~~p-~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~-dgdG~~d~~~vfa---------   68 (367)
T TIGR02604         1 GFKVTLFAAEP-LLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDA-DGDGKYDKSNVFA---------   68 (367)
T ss_pred             CcEEEEEECCC-ccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC-CCCCCcceeEEee---------
Confidence            45667776543 37899999995 68999999852            2488888631 334543   2332         


Q ss_pred             CCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEE-eCCc------c-eEEec-CCCCCCCCCCCccccccccCceEEEE
Q 024317           96 GEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI-TNLG------V-TTIAG-GGSKKEGRADGPAQNASFSNDFELTF  166 (269)
Q Consensus        96 g~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~-~~~g------~-~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~  166 (269)
                           ..+..|+||++.++| |||++.  .+|+++ +.++      + +.+.. .+...         ......|+++++
T Consensus        69 -----~~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~---------~~~~~~~~~l~~  131 (367)
T TIGR02604        69 -----EELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQI---------NNHHHSLNSLAW  131 (367)
T ss_pred             -----cCCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCC---------CcccccccCceE
Confidence                 236799999999888 999984  478877 3332      3 33332 11100         001355899999


Q ss_pred             eCCCCEEEEEECCC-------------------CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC
Q 024317          167 VPHICALLISDHGN-------------------QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA  227 (269)
Q Consensus       167 ~~~~g~LyVaD~~n-------------------~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g  227 (269)
                      .++ |.|||++..+                   +.|+++++++......+.               .+..|.|+++|++|
T Consensus       132 gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~---------------G~rnp~Gl~~d~~G  195 (367)
T TIGR02604       132 GPD-GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH---------------GFQNPYGHSVDSWG  195 (367)
T ss_pred             CCC-CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec---------------CcCCCccceECCCC
Confidence            998 8999988832                   457777777765443321               24679999999999


Q ss_pred             cEEEEcCCC
Q 024317          228 RPYIIRHTG  236 (269)
Q Consensus       228 ~lyVad~~g  236 (269)
                      ++|++|+..
T Consensus       196 ~l~~tdn~~  204 (367)
T TIGR02604       196 DVFFCDNDD  204 (367)
T ss_pred             CEEEEccCC
Confidence            999999743

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=99.22  E-value=1.3e-10  Score=103.27  Aligned_cols=151  Identities=15%  Similarity=0.164  Sum_probs=106.1

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..|.||+++...|++||+|..-+ ++++    ++.|........        ......+...+++.|+++|.+|++|+..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V----~p~g~~a~~l~~--------~~~G~~~kf~N~ldI~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKV----GPEGGLAELLAD--------EAEGKPFKFLNDLDIDPEGVVYFTDSSS  181 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEE----CCCCCcceeccc--------cccCeeeeecCceeEcCCCeEEEecccc
Confidence            47999999876679999997443 6677    445443222211        1112356788999999999999999742


Q ss_pred             -----------------CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEE
Q 024317          125 -----------------HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ  185 (269)
Q Consensus       125 -----------------~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~  185 (269)
                                       +|+.++|+..+  +.+.                ..|..|+||++++++..+.++++...||++
T Consensus       182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl----------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~r  245 (376)
T KOG1520|consen  182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL----------------DGLYFPNGLALSPDGSFVLVAETTTARIKR  245 (376)
T ss_pred             ccchhheEEeeecCCCccceEEecCcccchhhhh----------------hcccccccccCCCCCCEEEEEeeccceeee
Confidence                             34444444333  1221                248889999999999999999999999999


Q ss_pred             EECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       186 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      +...+.....          ...++.+ ....|..|-.+++|+.||+=+.
T Consensus       246 ywi~g~k~gt----------~EvFa~~-LPG~PDNIR~~~~G~fWVal~~  284 (376)
T KOG1520|consen  246 YWIKGPKAGT----------SEVFAEG-LPGYPDNIRRDSTGHFWVALHS  284 (376)
T ss_pred             eEecCCccCc----------hhhHhhc-CCCCCcceeECCCCCEEEEEec
Confidence            9887765422          2222222 4477999999999999999843

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.5e-09  Score=99.49  Aligned_cols=151  Identities=14%  Similarity=0.251  Sum_probs=112.6

Q ss_pred             CCcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ..|.+++++++++.+||++.  ++++|.++|   ...+++....-.|              ..|.+++++++|+ +||+|
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid---~~t~~~~~~~~vG--------------~~P~~~a~~p~g~~vyv~~  178 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVID---AATNKVTATIPVG--------------NTPTGVAVDPDGNKVYVTN  178 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEe---CCCCeEEEEEecC--------------CCcceEEECCCCCeEEEEe
Confidence            38999999988889999999  579999997   3445544433222              1789999999999 99999


Q ss_pred             CCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--CeEEEEECCCCeEEEeccc
Q 024317          122 KSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--QLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       122 ~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--~~I~~~~~~~~~~~~~~~~  199 (269)
                      ..+++|..++.++...+-+.....         ...+..|.++++++++..+||++..+  +++.+++.....+......
T Consensus       179 ~~~~~v~vi~~~~~~v~~~~~~~~---------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~  249 (381)
T COG3391         179 SDDNTVSVIDTSGNSVVRGSVGSL---------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP  249 (381)
T ss_pred             cCCCeEEEEeCCCcceeccccccc---------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence            999999999977762221221111         13368899999999977899999988  6999999888777654322


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH  234 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~  234 (269)
                      .   +         .+ .|.+++++++| .+||++.
T Consensus       250 ~---~---------~~-~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         250 V---G---------SG-APRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             c---c---------cC-CCCceeECCCCCEEEEEec
Confidence            0   1         22 57888999999 6777753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.21  E-value=2.7e-09  Score=96.54  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ...+|+.+.++|++..+||+|.+.++|+.++++ ...+++......          ....-..|+.|+++++|. +||++
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~-~~~~~l~~~~~~----------~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID-DDTGKLTPVDSI----------KVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE--TTS-TEEEEEEE----------ECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEe-CCCceEEEeecc----------ccccCCCCcEEEEcCCcCEEEEec
Confidence            456899999998778999999999999999874 233344432110          001124799999999987 99999


Q ss_pred             CCCCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEE
Q 024317          122 KSNHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP--EDCSK  195 (269)
Q Consensus       122 ~~n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~--~~~~~  195 (269)
                      ...+.|.+++.+   |. ..+..........       ..-..|.+|+++|++..|||++.+.+.|..|+.+.  +.+..
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~  283 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL  283 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTS-------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccc-------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence            999999988743   43 2222111110000       01247999999999889999999999999998743  33333


Q ss_pred             ecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317          196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD  239 (269)
Q Consensus       196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~  239 (269)
                      ....  ..          .-..|.+++++++| .|||++. .+.+.
T Consensus       284 ~~~~--~~----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  284 VQTV--PT----------GGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             EEEE--EE----------SSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEEE--eC----------CCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence            2221  11          11559999999999 6888883 44443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.3e-09  Score=100.01  Aligned_cols=156  Identities=15%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEEeC-
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADK-  122 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVaD~-  122 (269)
                      ..|.++++++....+||.+...+.|.++|.   ..-++......|              ..|.++++++++ .+||+|. 
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~---~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~  136 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDT---ATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAG  136 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcC---cccceeeEeeec--------------cCCceEEECCCCCEEEEEecc
Confidence            679999998877889999999999999973   233333333222              289999999988 5999999 


Q ss_pred             -CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317          123 -SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       123 -~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g  200 (269)
                       .+++|.++++... ...... .              =..|.+++++|++..+||+|..+++|..++..+..+.. ...+
T Consensus       137 ~~~~~vsvid~~t~~~~~~~~-v--------------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~  200 (381)
T COG3391         137 NGNNTVSVIDAATNKVTATIP-V--------------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG  200 (381)
T ss_pred             cCCceEEEEeCCCCeEEEEEe-c--------------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc
Confidence             5799999998765 221111 0              02689999999977799999999999999988777765 3331


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCCc-EEEEcCC---CCccccc
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHT---GRLDPPL  242 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~---g~~~~~~  242 (269)
                      ...+         ...+|.+++++++|. +||++..   +++...+
T Consensus       201 ~~~~---------~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         201 SLVG---------VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             cccc---------cCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            1111         347899999999995 9999944   3444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=5.9e-09  Score=94.30  Aligned_cols=167  Identities=15%  Similarity=0.207  Sum_probs=112.0

Q ss_pred             CCCCcceEEEecCCCeEEEEeC---CCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E
Q 024317           43 LEINPHSVIDRPGSSDLIVLDS---SRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I  117 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~---~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l  117 (269)
                      ...+|..+++++.+..||+++.   ..+.|..++.  +.+ |++..+....           ..-..|+.|+++++|. |
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i--~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l  101 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI--DPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFL  101 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE--ETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE--CCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEE
Confidence            5668999999988899999998   4688887765  344 6666543110           1234899999999888 9


Q ss_pred             EEEeCCCCEEEEEe--CCcc-eEE---e-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          118 YVADKSNHVIRKIT--NLGV-TTI---A-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       118 yVaD~~n~~I~~~~--~~g~-~~~---~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ||+++..+.|..++  .+|. ...   . ..+. +  .   ....+.-..|+.+.++|++..+||+|.+.++|++|+.+.
T Consensus       102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g--~---~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen  102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-G--P---NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             EEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-E--S---STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             EEEEccCCeEEEEEccCCcccceeeeecccCCC-C--C---cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            99999999987765  5565 222   1 1110 0  0   011233568999999999889999999999999999876


Q ss_pred             Ce--EEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317          191 ED--CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD  239 (269)
Q Consensus       191 ~~--~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~  239 (269)
                      ..  +........+.|           +.|+.++++++| .+||++. .+.+.
T Consensus       176 ~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  176 DTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             TS-TEEEEEEEECSTT-----------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             CCceEEEeeccccccC-----------CCCcEEEEcCCcCEEEEecCCCCcEE
Confidence            54  333111111122           669999999998 7999983 44333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.12  E-value=7.1e-09  Score=88.41  Aligned_cols=185  Identities=14%  Similarity=0.143  Sum_probs=122.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC----------------C------cccCC---CCC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD----------------G------VQGYS---DGE   97 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~----------------g------~~g~~---dg~   97 (269)
                      ...+|++|.+. .+|..||+|+++ .|.|+|.   ++..++++.=.                |      +.|+-   |-.
T Consensus       102 ~Ga~Phgiv~g-pdg~~Witd~~~-aI~R~dp---kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa  176 (353)
T COG4257         102 SGASPHGIVVG-PDGSAWITDTGL-AIGRLDP---KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA  176 (353)
T ss_pred             CCCCCceEEEC-CCCCeeEecCcc-eeEEecC---cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcc
Confidence            45689999997 489999999987 8999863   24444433211                1      01110   100


Q ss_pred             ------cccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-cceEEecCCCCCCCCCCCccccccccCceEEEEeCCC
Q 024317           98 ------PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI  170 (269)
Q Consensus        98 ------~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~  170 (269)
                            ...-+=..|.|||++++|.+|++....+.|-++|+. +.....-...            +.-..-..|..|+. 
T Consensus       177 ~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~------------~~~~gsRriwsdpi-  243 (353)
T COG4257         177 RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN------------ALKAGSRRIWSDPI-  243 (353)
T ss_pred             cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC------------cccccccccccCcc-
Confidence                  001122357899999999999999988999999963 2211111100            00112245888887 


Q ss_pred             CEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc--ccccc
Q 024317          171 CALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL--QHDME  247 (269)
Q Consensus       171 g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~--~~~~~  247 (269)
                      |.+++++.+++++.+|++....=....-+    +         .-.+|..+-+|..|++|.+| ..|.+.+-+  +..+.
T Consensus       244 g~~wittwg~g~l~rfdPs~~sW~eypLP----g---------s~arpys~rVD~~grVW~sea~agai~rfdpeta~ft  310 (353)
T COG4257         244 GRAWITTWGTGSLHRFDPSVTSWIEYPLP----G---------SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT  310 (353)
T ss_pred             CcEEEeccCCceeeEeCcccccceeeeCC----C---------CCCCcceeeeccCCcEEeeccccCceeecCcccceEE
Confidence            99999999999999999866542222222    1         12568899999999999999 566666555  88999


Q ss_pred             cccCCCCCCch
Q 024317          248 ALPNQSGETST  258 (269)
Q Consensus       248 ~~~~~~~~~~~  258 (269)
                      ++|.++-+..+
T Consensus       311 v~p~pr~n~gn  321 (353)
T COG4257         311 VLPIPRPNSGN  321 (353)
T ss_pred             EecCCCCCCCc
Confidence            99998877543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.10  E-value=4.4e-09  Score=89.70  Aligned_cols=164  Identities=14%  Similarity=0.152  Sum_probs=114.5

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEE-cCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~-g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...|+.|+.+ .+|.+|+++.+.+.|=++|.   .+|+++++. |.|              .+|.+|.++++|..||+|.
T Consensus        61 G~ap~dvapa-pdG~VWft~qg~gaiGhLdP---~tGev~~ypLg~G--------------a~Phgiv~gpdg~~Witd~  122 (353)
T COG4257          61 GSAPFDVAPA-PDGAVWFTAQGTGAIGHLDP---ATGEVETYPLGSG--------------ASPHGIVVGPDGSAWITDT  122 (353)
T ss_pred             CCCccccccC-CCCceEEecCccccceecCC---CCCceEEEecCCC--------------CCCceEEECCCCCeeEecC
Confidence            4469999996 58999999999999999974   578877764 333              3899999999999999999


Q ss_pred             CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317          123 SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       123 ~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      ++ .|.++++. +. +++-=...         ...+.|+.   ..+|+. |+||++.. ++--=++++....+..+..+ 
T Consensus       123 ~~-aI~R~dpkt~evt~f~lp~~---------~a~~nlet---~vfD~~-G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-  186 (353)
T COG4257         123 GL-AIGRLDPKTLEVTRFPLPLE---------HADANLET---AVFDPW-GNLWFTGQ-IGAYGRLDPARNVISVFPAP-  186 (353)
T ss_pred             cc-eeEEecCcccceEEeecccc---------cCCCcccc---eeeCCC-ccEEEeec-cccceecCcccCceeeeccC-
Confidence            87 99999984 43 44422111         11233433   567887 99999887 33333555555555544333 


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccc---ccccccccccCCCC
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDP---PLQHDMEALPNQSG  254 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~---~~~~~~~~~~~~~~  254 (269)
                        .|           ..|.|||+.++|.+|++...+.-..   |..+..|++|.|-+
T Consensus       187 --qG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~  230 (353)
T COG4257         187 --QG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA  230 (353)
T ss_pred             --CC-----------CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCc
Confidence              12           4599999999999999985444333   33556666666654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.03  E-value=2.8e-08  Score=89.04  Aligned_cols=157  Identities=11%  Similarity=0.113  Sum_probs=107.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      .+|..++++++...||++....+.|..++.  +.+|.+......            .....|..|+++++|+ +|++.+.
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~--~~~g~l~~~~~~------------~~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRI--ADDGALTFAAES------------PLPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEE--CCCCceEEeeee------------cCCCCceEEEECCCCCEEEEEEcC
Confidence            479999998877789999888888987765  345665433210            0123689999999998 9999988


Q ss_pred             CCEEEEEeC--Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe--cc
Q 024317          124 NHVIRKITN--LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS--SQ  198 (269)
Q Consensus       124 n~~I~~~~~--~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~--~~  198 (269)
                      .++|..++.  +|. .......             .....|.+++++|++..|||++.+.++|..++.+.......  ..
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~-------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~  167 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQII-------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA  167 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeec-------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence            888888864  343 2111100             01346899999999789999999999999999865322110  00


Q ss_pred             c-CccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317          199 S-GSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD  239 (269)
Q Consensus       199 ~-g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~  239 (269)
                      . ....|           ..|.+++++++| .+||++. .+.+.
T Consensus       168 ~~~~~~g-----------~~p~~~~~~pdg~~lyv~~~~~~~v~  200 (330)
T PRK11028        168 EVTTVEG-----------AGPRHMVFHPNQQYAYCVNELNSSVD  200 (330)
T ss_pred             ceecCCC-----------CCCceEEECCCCCEEEEEecCCCEEE
Confidence            0 00011           558899999998 6888874 55554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.02  E-value=9.6e-09  Score=93.74  Aligned_cols=162  Identities=16%  Similarity=0.231  Sum_probs=97.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCC-------------------CEEEEEecCCCCCc-cEEEEEcCCcccCCCCCcccccCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSR-------------------SAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFD  104 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~-------------------~~I~~~dl~~~~~g-~~~~~~g~g~~g~~dg~~~~~~~~  104 (269)
                      ..|.++++++ +|.|||++..+                   +.|++++    +++ +++.++              ..+.
T Consensus       124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~----pdg~~~e~~a--------------~G~r  184 (367)
T TIGR02604       124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN----PDGGKLRVVA--------------HGFQ  184 (367)
T ss_pred             ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEe----cCCCeEEEEe--------------cCcC
Confidence            4588999975 89999998732                   3566663    333 233332              2378


Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc------eEEecCCCC--CCCC---C---------CC----ccccccccC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV------TTIAGGGSK--KEGR---A---------DG----PAQNASFSN  160 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~------~~~~g~~~~--~~~~---~---------~~----~~~~~~l~~  160 (269)
                      .|.|+++|++|++|++|..++...++++-..      ..+.+....  ....   .         ..    .........
T Consensus       185 np~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a  264 (367)
T TIGR02604       185 NPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTA  264 (367)
T ss_pred             CCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCcc
Confidence            9999999999999999987665555553211      000000000  0000   0         00    001112357


Q ss_pred             ceEEEEeC-------CCCEEEEEECCCCeEEEEECCC--CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEE
Q 024317          161 DFELTFVP-------HICALLISDHGNQLIRQINLKP--EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYI  231 (269)
Q Consensus       161 P~gia~~~-------~~g~LyVaD~~n~~I~~~~~~~--~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyV  231 (269)
                      |.|+++-.       -++.++|++...++|+++.++.  ....... ..       +........+|..++++++|.|||
T Consensus       265 p~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~-~~-------~l~~~~~~~rp~dv~~~pDG~Lyv  336 (367)
T TIGR02604       265 PCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGER-PE-------FLRSNDTWFRPVNVTVGPDGALYV  336 (367)
T ss_pred             ccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeec-Cc-------eEecCCCcccccceeECCCCCEEE
Confidence            89999873       2478999999999999998763  2222110 10       101111236899999999999999


Q ss_pred             Ec
Q 024317          232 IR  233 (269)
Q Consensus       232 ad  233 (269)
                      +|
T Consensus       337 ~d  338 (367)
T TIGR02604       337 SD  338 (367)
T ss_pred             EE
Confidence            99

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.02  E-value=2.6e-08  Score=89.21  Aligned_cols=164  Identities=11%  Similarity=0.046  Sum_probs=105.7

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ..|++++++|++..+||++.+.+.|..+|+  +..|.+.........        ...-..|.+++++++|. +||++..
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~--~~~g~l~~~~~~~~~--------~~~g~~p~~~~~~pdg~~lyv~~~~  195 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTL--SDDGHLVAQEPAEVT--------TVEGAGPRHMVFHPNQQYAYCVNEL  195 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEE--CCCCcccccCCCcee--------cCCCCCCceEEECCCCCEEEEEecC
Confidence            468999998877899999999999999987  344544211000000        00113689999999988 8999988


Q ss_pred             CCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEec
Q 024317          124 NHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP--EDCSKSS  197 (269)
Q Consensus       124 n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~--~~~~~~~  197 (269)
                      .+.|..++-+   +. ..+.......    ...   ..-.+|.+|+++|++..|||++...+.|..|+.+.  ......+
T Consensus       196 ~~~v~v~~~~~~~~~~~~~~~~~~~p----~~~---~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~  268 (330)
T PRK11028        196 NSSVDVWQLKDPHGEIECVQTLDMMP----ADF---SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG  268 (330)
T ss_pred             CCEEEEEEEeCCCCCEEEEEEEecCC----CcC---CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence            8999888743   33 2221111000    000   01135778999999788999999888998887643  2222222


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRL  238 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~  238 (269)
                      ..  ..           -..|.+++++++| .||++.. .+.+
T Consensus       269 ~~--~~-----------~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        269 HQ--PT-----------ETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             EE--ec-----------cccCCceEECCCCCEEEEEEccCCcE
Confidence            21  00           1468899999999 8898884 4433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.7e-08  Score=87.43  Aligned_cols=153  Identities=14%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCC-----------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSS-----------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~-----------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      ...+.|.++.++ .+|.+||+|..           ..++|++    ++.|.......             ..+..|+|||
T Consensus       108 ~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~----~p~g~~~~l~~-------------~~~~~~NGla  169 (307)
T COG3386         108 LPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRV----DPDGGVVRLLD-------------DDLTIPNGLA  169 (307)
T ss_pred             CCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEE----cCCCCEEEeec-------------CcEEecCceE
Confidence            356889999996 58999999977           2356666    34555555432             2377999999


Q ss_pred             EcCCC-CEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEE
Q 024317          111 VDMKG-NIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQIN  187 (269)
Q Consensus       111 vd~~G-~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~  187 (269)
                      ++++| .+||+|+..++|.+++-+-. -.+.+.... ...      ...=..|.|+++|.+ |+||++-.. ..+|.+|+
T Consensus       170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~-~~~------~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF-VDF------DEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE-EEc------cCCCCCCCceEEeCC-CCEEEecccCCceEEEEC
Confidence            99999 59999999999999975511 111111000 000      000146999999987 999954444 45999999


Q ss_pred             CCCCeEEEecccCccCCCcccceeeeeccceeeEEEecC--CcEEEEcCC
Q 024317          188 LKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFV--ARPYIIRHT  235 (269)
Q Consensus       188 ~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~--g~lyVad~~  235 (269)
                      ++|.......-+.               ..|..+|+...  ..|||+...
T Consensus       242 pdG~l~~~i~lP~---------------~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         242 PDGKLLGEIKLPV---------------KRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             CCCcEEEEEECCC---------------CCCccceEeCCCcCEEEEEecC
Confidence            9987766654441               33455555543  588988843

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.99  E-value=6.8e-09  Score=99.17  Aligned_cols=151  Identities=17%  Similarity=0.101  Sum_probs=114.4

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      ..|..|.|||||-..-++|.+|+.+.+|-+-.|    +|+.+.+.            ....|-.|.+|++|+ .|+||-+
T Consensus      1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L----dG~~rkvL------------f~tdLVNPR~iv~D~~rgnLYwt 1128 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALL----DGSERKVL------------FYTDLVNPRAIVVDPIRGNLYWT 1128 (1289)
T ss_pred             ccCCCccceeeeeccceeeeeccccchhheeec----CCceeeEE------------EeecccCcceEEeecccCceeec
Confidence            468899999998878899999999999877633    55544332            123478999999998 8889999


Q ss_pred             eCC--CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKS--NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~--n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      |+.  |-.|-..+-||+ .++.-.              ..+.-|+||.++|-...|..+|.+++|+--+.+++.......
T Consensus      1129 DWnRenPkIets~mDG~NrRilin--------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~ 1194 (1289)
T KOG1214|consen 1129 DWNRENPKIETSSMDGENRRILIN--------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ 1194 (1289)
T ss_pred             cccccCCcceeeccCCccceEEee--------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh
Confidence            974  667888888888 444332              226779999999988889999999999998887776443321


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                      .               .|++|.+|.-+.+. +|-+| ..+++
T Consensus      1195 ~---------------~LqYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1195 N---------------NLQYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred             h---------------cccCceeeeecccc-ceeeccccCce
Confidence            1               46889999988654 99999 44333

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.87  E-value=1.7e-08  Score=72.85  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=53.1

Q ss_pred             ceEEEcCC-CCEEEEeCC-----------------CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEE
Q 024317          107 KSFAVDMK-GNIYVADKS-----------------NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTF  166 (269)
Q Consensus       107 ~giavd~~-G~lyVaD~~-----------------n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~  166 (269)
                      ++++|+++ |.|||+|..                 ++|+.++|+...  ..++..                |..|+||++
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~----------------L~fpNGVal   64 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG----------------LYFPNGVAL   64 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE----------------ESSEEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC----------------CCccCeEEE
Confidence            47899998 999999982                 579999999876  444432                889999999


Q ss_pred             eCCCCEEEEEECCCCeEEEEECCC
Q 024317          167 VPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       167 ~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ++++..|+|+++...||+|+...|
T Consensus        65 s~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   65 SPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cCCCCEEEEEeccCceEEEEEEeC
Confidence            999888999999999999998766

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.85  E-value=4.5e-09  Score=59.23  Aligned_cols=28  Identities=50%  Similarity=0.837  Sum_probs=26.5

Q ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 024317          103 FDKPKSFAVDMKGNIYVADKSNHVIRKI  130 (269)
Q Consensus       103 ~~~P~giavd~~G~lyVaD~~n~~I~~~  130 (269)
                      |+.|.||+++++|+|||||++||||++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.79  E-value=1.3e-06  Score=75.19  Aligned_cols=185  Identities=14%  Similarity=0.101  Sum_probs=102.6

Q ss_pred             CcEEEEE-ecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317           31 GYTVTTV-IDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (269)
Q Consensus        31 g~~~~~~-~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi  109 (269)
                      .+.+..- ..-.+....+.||+++++.+.||...-....|+.++    .+|++...+.-            ..+.-|.||
T Consensus         7 ~y~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els----~~G~vlr~i~l------------~g~~D~EgI   70 (248)
T PF06977_consen    7 DYRVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS----LDGKVLRRIPL------------DGFGDYEGI   70 (248)
T ss_dssp             T-EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE----TT--EEEEEE-------------SS-SSEEEE
T ss_pred             CcEEEEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc----CCCCEEEEEeC------------CCCCCceeE
Confidence            4554432 222345567999999987899999888889999985    46776665422            125578999


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeC--Ccc----e---EE-ecCC---CCCC--------------------------CC--
Q 024317          110 AVDMKGNIYVADKSNHVIRKITN--LGV----T---TI-AGGG---SKKE--------------------------GR--  148 (269)
Q Consensus       110 avd~~G~lyVaD~~n~~I~~~~~--~g~----~---~~-~g~~---~~~~--------------------------~~--  148 (269)
                      +.-.+|.+.+++-..+++.+++-  ++.    .   .+ .+..   ..++                          ..  
T Consensus        71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~  150 (248)
T PF06977_consen   71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP  150 (248)
T ss_dssp             EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred             EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence            99877878888876777776653  221    0   01 0100   0000                          00  


Q ss_pred             CCC----------ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccce
Q 024317          149 ADG----------PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCL  218 (269)
Q Consensus       149 ~~~----------~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p  218 (269)
                      .+.          ......+..|++|+++|..++|||....+.+|..++..|..+....-.....|   +   .-.+..|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~g---l---~~~~~Qp  224 (248)
T PF06977_consen  151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHG---L---SKDIPQP  224 (248)
T ss_dssp             -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-------SS---SE
T ss_pred             CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccC---c---ccccCCc
Confidence            000          00112356799999999999999999999999999999987665432211111   0   0134679


Q ss_pred             eeEEEecCCcEEEEcCCCC
Q 024317          219 VSLVIGFVARPYIIRHTGR  237 (269)
Q Consensus       219 ~gia~d~~g~lyVad~~g~  237 (269)
                      .|||+|++|+|||+..-+.
T Consensus       225 EGIa~d~~G~LYIvsEpNl  243 (248)
T PF06977_consen  225 EGIAFDPDGNLYIVSEPNL  243 (248)
T ss_dssp             EEEEE-TT--EEEEETTTE
T ss_pred             cEEEECCCCCEEEEcCCce
Confidence            9999999999999986544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.66  E-value=1.3e-06  Score=78.21  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             cCCCCceEEEcCCC-CEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317          102 RFDKPKSFAVDMKG-NIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH  178 (269)
Q Consensus       102 ~~~~P~giavd~~G-~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~  178 (269)
                      .--+|-||+++.+| +|||||.+ --+.+++++|.  ..++.....           ..+...+++.+++ +|.+|++|+
T Consensus       113 ~CGRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G-----------~~~kf~N~ldI~~-~g~vyFTDS  179 (376)
T KOG1520|consen  113 LCGRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG-----------KPFKFLNDLDIDP-EGVVYFTDS  179 (376)
T ss_pred             ccCCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC-----------eeeeecCceeEcC-CCeEEEecc
Confidence            34689999999988 89999975 35888998876  444433211           2366678999999 599999999


Q ss_pred             CC-----------------CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCC-CCcc
Q 024317          179 GN-----------------QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHT-GRLD  239 (269)
Q Consensus       179 ~n-----------------~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~-g~~~  239 (269)
                      ..                 +|+.++++..+.....             ..  .|..|+|+++.+++ .+.+++.. .|+.
T Consensus       180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VL-------------ld--~L~F~NGlaLS~d~sfvl~~Et~~~ri~  244 (376)
T KOG1520|consen  180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVL-------------LD--GLYFPNGLALSPDGSFVLVAETTTARIK  244 (376)
T ss_pred             ccccchhheEEeeecCCCccceEEecCcccchhhh-------------hh--cccccccccCCCCCCEEEEEeeccceee
Confidence            64                 3333333333222111             11  45789999999999 55566643 3444


Q ss_pred             ccc
Q 024317          240 PPL  242 (269)
Q Consensus       240 ~~~  242 (269)
                      ++-
T Consensus       245 ryw  247 (376)
T KOG1520|consen  245 RYW  247 (376)
T ss_pred             eeE
Confidence            443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.66  E-value=6.8e-08  Score=54.35  Aligned_cols=28  Identities=14%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             ccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          158 FSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      |..|+||+++++ |+|||+|..|+||++|
T Consensus         1 f~~P~gvav~~~-g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSD-GNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETT-SEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCC-CCEEEEECCCCEEEEC
Confidence            578999999976 9999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.60  E-value=2e-06  Score=77.48  Aligned_cols=166  Identities=16%  Similarity=0.129  Sum_probs=96.9

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCC----CCEE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK----GNIY  118 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~----G~ly  118 (269)
                      |+.|.+|++.| +|++||++. .++|++++    .+|.. ..+..... -      .........||+++++    +.||
T Consensus         1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~----~~g~~~~~v~~~~~-v------~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVD----KDGSLKTPVADLPE-V------FADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             ESSEEEEEEET-TSCEEEEET-TTEEEEEE----TTTEECEEEEE-TT-T------BTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CCCceEEEEeC-CCcEEEEeC-CceEEEEe----CCCcCcceeccccc-c------cccccCCcccceeccccCCCCEEE
Confidence            46899999976 699999998 99999995    45554 22222110 0      1112336689999984    8899


Q ss_pred             EEeCCC--------CEEEEEeCC-c-----c-eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC---
Q 024317          119 VADKSN--------HVIRKITNL-G-----V-TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG---  179 (269)
Q Consensus       119 VaD~~n--------~~I~~~~~~-g-----~-~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~---  179 (269)
                      |+-+..        ++|.++..+ +     . ..+ .+...          .......-..|++.|+ |.|||+=..   
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~fgpD-G~LYvs~G~~~~  136 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLAFGPD-GKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEEE-TT-SEEEEEEB-TTT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCccccCCCC-CcEEEEeCCCCC
Confidence            988732        467766532 1     1 222 12111          0012345567999998 899987442   


Q ss_pred             ----------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecC-CcEEEEcCC
Q 024317          180 ----------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRHT  235 (269)
Q Consensus       180 ----------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~~  235 (269)
                                .+.|++++.++..-.-....+........|+.  .+-.|.++++|+. |+||++|+.
T Consensus       137 ~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--GlRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  137 DDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--GLRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             GGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-
T ss_pred             cccccccccccceEEEecccCcCCCCCccccCCCceEEEEEe--CCCccccEEEECCCCcEEEEccC
Confidence                      35788888877522111111111123334444  3578999999999 999999964

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.58  E-value=1.4e-05  Score=74.47  Aligned_cols=178  Identities=13%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             ecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC
Q 024317           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (269)
Q Consensus        27 ~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P  106 (269)
                      ..+.++.++++.+   .|..|++|++.| +|++||+....++|++++.   .++....+.+...  ..    .......+
T Consensus        15 ~~p~~f~~~~va~---GL~~Pw~maflP-DG~llVtER~~G~I~~v~~---~~~~~~~~~~l~~--v~----~~~ge~GL   81 (454)
T TIGR03606        15 AASENFDKKVLLS---GLNKPWALLWGP-DNQLWVTERATGKILRVNP---ETGEVKVVFTLPE--IV----NDAQHNGL   81 (454)
T ss_pred             cCCCCcEEEEEEC---CCCCceEEEEcC-CCeEEEEEecCCEEEEEeC---CCCceeeeecCCc--ee----ccCCCCce
Confidence            3467788887764   467999999965 7899999987799999852   2333333322211  00    01124567


Q ss_pred             ceEEEcCC-------CCEEEEeC---------CCCEEEEEeCCc-------ceE-EecCCCCCCCCCCCccccccccCce
Q 024317          107 KSFAVDMK-------GNIYVADK---------SNHVIRKITNLG-------VTT-IAGGGSKKEGRADGPAQNASFSNDF  162 (269)
Q Consensus       107 ~giavd~~-------G~lyVaD~---------~n~~I~~~~~~g-------~~~-~~g~~~~~~~~~~~~~~~~~l~~P~  162 (269)
                      .||+++++       +.|||+-+         ...+|.++..+.       ... +.+...            .....=.
T Consensus        82 lglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~------------~~~H~Gg  149 (454)
T TIGR03606        82 LGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA------------GNDHNGG  149 (454)
T ss_pred             eeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCC------------CCCcCCc
Confidence            88999865       35999842         246787776431       112 222110            0123334


Q ss_pred             EEEEeCCCCEEEEEECCC--------------------------------CeEEEEECCCCeEEEecccCccCC-Ccccc
Q 024317          163 ELTFVPHICALLISDHGN--------------------------------QLIRQINLKPEDCSKSSQSGSALG-AVSVW  209 (269)
Q Consensus       163 gia~~~~~g~LyVaD~~n--------------------------------~~I~~~~~~~~~~~~~~~~g~~~g-~~~~~  209 (269)
                      .|+++|+ |.|||+-...                                +.|+|++.+|..-.  .++ +..+ ....|
T Consensus       150 rI~FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNP-f~~g~~~eIy  225 (454)
T TIGR03606       150 RLVFGPD-GKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNP-SINGVVSHIF  225 (454)
T ss_pred             eEEECCC-CcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCC--CCC-ccCCCcceEE
Confidence            6888998 8899864432                                24666666553110  000 0001 12234


Q ss_pred             eeeeeccceeeEEEecCCcEEEEcCC
Q 024317          210 VLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       210 ~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ..  .+-.|.|+++|++|.||++|+.
T Consensus       226 A~--G~RNp~Gla~dp~G~Lw~~e~G  249 (454)
T TIGR03606       226 TY--GHRNPQGLAFTPDGTLYASEQG  249 (454)
T ss_pred             EE--eccccceeEECCCCCEEEEecC
Confidence            33  3477999999999999999965

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.54  E-value=8.1e-07  Score=85.37  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=101.3

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n  124 (269)
                      -|.||++|=.+..+|.+|-..+.|.+-.|.   .++.++++             ...|.+|.|||||- ..++|-+|+.+
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~---G~Ep~ti~-------------n~~L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLE---GAEPETIV-------------NSGLISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCcccccccc---CCCCceee-------------cccCCCccceeeeeccceeeeecccc
Confidence            477888865577899999988888887541   23344443             23488999999997 55699999999


Q ss_pred             CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .+|-+-..+|+ +.+...              ..|-+|.+|++|+-.++||.+|+.  |-.|-+.+.+|+-...+.+.  
T Consensus      1090 D~IevA~LdG~~rkvLf~--------------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~-- 1153 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFY--------------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT-- 1153 (1289)
T ss_pred             chhheeecCCceeeEEEe--------------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec--
Confidence            99998888887 333221              128899999999999999999983  55677778887655544433  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCC
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVA  227 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g  227 (269)
                                  .+.-|.|+.+|+..
T Consensus      1154 ------------DigLPNGLtfdpfs 1167 (1289)
T KOG1214|consen 1154 ------------DIGLPNGLTFDPFS 1167 (1289)
T ss_pred             ------------ccCCCCCceeCccc
Confidence                        23447777777776

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.52  E-value=1.5e-05  Score=70.46  Aligned_cols=165  Identities=14%  Similarity=0.165  Sum_probs=110.0

Q ss_pred             CCCCcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV  119 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV  119 (269)
                      ...+|+-|++++++..||+....  .+.|..+..+ ..+|++..+--.           ...-+.|+-|++|.+|+ +|+
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD-~~~G~Lt~ln~~-----------~~~g~~p~yvsvd~~g~~vf~  105 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID-PDDGRLTFLNRQ-----------TLPGSPPCYVSVDEDGRFVFV  105 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-CCCCeEEEeecc-----------ccCCCCCeEEEECCCCCEEEE
Confidence            46689999998877799999775  6677666542 234777665311           11234669999999997 999


Q ss_pred             EeCCCCEEEEEe--CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          120 ADKSNHVIRKIT--NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       120 aD~~n~~I~~~~--~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      |.+..+.|.++.  .+|. ....+.-.-....+   -..+.-..++..-++|++..|++.|-+..||..|+.+.+.+...
T Consensus       106 AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p---~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         106 ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP---HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             EEccCceEEEEEcccCCccccceeeeecCCCCC---CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            999988888765  5675 22222111000000   11222334677778999779999999999999999886655544


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                      ...-...|           ..|+=|++.++| -.|+..
T Consensus       183 ~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~  209 (346)
T COG2706         183 DPAEVKPG-----------AGPRHIVFHPNGKYAYLVN  209 (346)
T ss_pred             cccccCCC-----------CCcceEEEcCCCcEEEEEe
Confidence            33322222           568999999999 667776

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.45  E-value=7.8e-06  Score=73.62  Aligned_cols=184  Identities=17%  Similarity=0.155  Sum_probs=93.1

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCE-EEEEecCCCCCccEEEEEcCCc-----ccCC----CCCcccccCCCCceEEEcC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSA-FYTLSFPLSEESVVKRLAGDGV-----QGYS----DGEPGSARFDKPKSFAVDM  113 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~-I~~~dl~~~~~g~~~~~~g~g~-----~g~~----dg~~~~~~~~~P~giavd~  113 (269)
                      ..+-..|++.| +|.|||+-..... -..-+. .+..|++..+--.|.     +.+.    +...-...+..|.++++|+
T Consensus       113 ~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~-~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~  190 (331)
T PF07995_consen  113 NHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDP-NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP  190 (331)
T ss_dssp             SS-EEEEEE-T-TSEEEEEEB-TTTGGGGCST-TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred             CCCCccccCCC-CCcEEEEeCCCCCccccccc-ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence            34457799975 7899999432211 000000 012333333332222     1111    1112245689999999999


Q ss_pred             C-CCEEEEeCCC---CEEEEEeCCcce---EEe-cCCCCCC-----CCCCCc-cccccc---cCceEEEEeCC------C
Q 024317          114 K-GNIYVADKSN---HVIRKITNLGVT---TIA-GGGSKKE-----GRADGP-AQNASF---SNDFELTFVPH------I  170 (269)
Q Consensus       114 ~-G~lyVaD~~n---~~I~~~~~~g~~---~~~-g~~~~~~-----~~~~~~-~~~~~l---~~P~gia~~~~------~  170 (269)
                      . |+||++|.+.   ..|.++.+.+..   ... +....+.     ...... .....+   ..|.|+++-..      .
T Consensus       191 ~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~  270 (331)
T PF07995_consen  191 NTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYR  270 (331)
T ss_dssp             TTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGT
T ss_pred             CCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCcccc
Confidence            8 9999999764   345555543211   111 0000000     000000 000011   46889987632      4


Q ss_pred             CEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          171 CALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       171 g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                      |.++|+|...++|+++..+..........- . +.        .-.+|.+|++++||.|||++ .+|+|+
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~--------~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEF-L-GG--------FGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-TT--------SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEc-c-cc--------CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            789999999999999998744322111110 0 00        11479999999999999998 477765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=0.00033  Score=62.02  Aligned_cols=171  Identities=12%  Similarity=0.018  Sum_probs=107.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcc-cccCCCCceEEEcCCCC-EEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPG-SARFDKPKSFAVDMKGN-IYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~-~~~~~~P~giavd~~G~-lyVa  120 (269)
                      ....|..|++++++..+|++....+.|.++-+  ..+|.+....+.-. .. ..++. ...-.++...-++++++ |+++
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~--~~dG~l~~~v~~~~-h~-g~~p~~rQ~~~h~H~a~~tP~~~~l~v~  162 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL--QADGSLQPVVQVVK-HT-GSGPHERQESPHVHSANFTPDGRYLVVP  162 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEc--ccCCccccceeeee-cC-CCCCCccccCCccceeeeCCCCCEEEEe
Confidence            45567999997655589999999999988865  45677665543211 00 01111 12233567888999996 9999


Q ss_pred             eCCCCEEEEEeC-CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEec
Q 024317          121 DKSNHVIRKITN-LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE--DCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~--~~~~~~  197 (269)
                      |-+..||..|+- +|+.+.+....-           ..=..|..|++.|+....|+...-++.|-++..++.  .+... 
T Consensus       163 DLG~Dri~~y~~~dg~L~~~~~~~v-----------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l-  230 (346)
T COG2706         163 DLGTDRIFLYDLDDGKLTPADPAEV-----------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL-  230 (346)
T ss_pred             ecCCceEEEEEcccCcccccccccc-----------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe-
Confidence            999999998884 454111111000           002468999999997788999999999888776653  22221 


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH  234 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~  234 (269)
                      +.....-....     .-..-..|.++++| .||+++.
T Consensus       231 Q~i~tlP~dF~-----g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         231 QTIDTLPEDFT-----GTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             eeeccCccccC-----CCCceeEEEECCCCCEEEEecC
Confidence            11101110000     01334568899999 7888883

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.22  E-value=0.00078  Score=58.57  Aligned_cols=174  Identities=16%  Similarity=0.161  Sum_probs=107.0

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...+-.+++++|+...+|.+-...-.|..+    +.+|++...+.-            ..|..|.+|..-.+|...++|-
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----t~~GdlirtiPL------------~g~~DpE~Ieyig~n~fvi~dE  147 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----TKEGDLIRTIPL------------TGFSDPETIEYIGGNQFVIVDE  147 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEE----ecCCceEEEecc------------cccCChhHeEEecCCEEEEEeh
Confidence            345688999998777787776555566666    678887766522            2366788888877777777887


Q ss_pred             CCCEEEEEe--CCcc-eEEec-------CCCCCCCC-----C--CC------------------------------ccc-
Q 024317          123 SNHVIRKIT--NLGV-TTIAG-------GGSKKEGR-----A--DG------------------------------PAQ-  154 (269)
Q Consensus       123 ~n~~I~~~~--~~g~-~~~~g-------~~~~~~~~-----~--~~------------------------------~~~-  154 (269)
                      ...++.+|.  +++. ..+..       ......++     +  +.                              ... 
T Consensus       148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence            777766554  4432 11110       00000000     0  00                              000 


Q ss_pred             -cccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          155 -NASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       155 -~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                       +--+..-+|+.+++..++|+|.-...+++..++..|..+....-.+...|-      .-....+.|||.|.+|+|||+.
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL------~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGL------SSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCC------cccCCCcceeEECCCCCEEEEe
Confidence             011344578888887889999888889999999999864433222111111      0134678999999999999998


Q ss_pred             CCCCc
Q 024317          234 HTGRL  238 (269)
Q Consensus       234 ~~g~~  238 (269)
                      .-+..
T Consensus       302 EPnlf  306 (316)
T COG3204         302 EPNLF  306 (316)
T ss_pred             cCCcc
Confidence            55433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.21  E-value=1.1e-05  Score=58.18  Aligned_cols=69  Identities=13%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             eEEEecCCCeEEEEeC-----------------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEE
Q 024317           49 SVIDRPGSSDLIVLDS-----------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (269)
Q Consensus        49 giav~~~~g~lyV~D~-----------------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav  111 (269)
                      +++|++.+|.||++|+                 .++|++++|.   .+++..++.              ..|.+|+||++
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~--------------~~L~fpNGVal   64 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLL--------------DGLYFPNGVAL   64 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEE--------------EEESSEEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEeh--------------hCCCccCeEEE
Confidence            6888654599999985                 3577888863   355555554              34789999999


Q ss_pred             cCCCC-EEEEeCCCCEEEEEeCCc
Q 024317          112 DMKGN-IYVADKSNHVIRKITNLG  134 (269)
Q Consensus       112 d~~G~-lyVaD~~n~~I~~~~~~g  134 (269)
                      ++++. ++|+++..+||.++--.|
T Consensus        65 s~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   65 SPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cCCCCEEEEEeccCceEEEEEEeC
Confidence            99999 999999999999986443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.18  E-value=0.00079  Score=59.44  Aligned_cols=173  Identities=10%  Similarity=0.030  Sum_probs=101.7

Q ss_pred             CCcEEEEEecCcc---CCCCcceEEEecCC-----CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCccc------CCC
Q 024317           30 DGYTVTTVIDGHQ---LEINPHSVIDRPGS-----SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQG------YSD   95 (269)
Q Consensus        30 ~g~~~~~~~~g~~---~~~~P~giav~~~~-----g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g------~~d   95 (269)
                      .+..++++-=...   .-..-..++++...     +.+||+|.....|.++|+   .+|+..++.......      +..
T Consensus        43 t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl---~~~~s~Rv~~~~~~~~p~~~~~~i  119 (287)
T PF03022_consen   43 TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDL---ATGKSWRVLHNSFSPDPDAGPFTI  119 (287)
T ss_dssp             TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEET---TTTEEEEEETCGCTTS-SSEEEEE
T ss_pred             CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEc---cCCcEEEEecCCcceeccccceec
Confidence            4555555432222   23356778886533     589999999999999996   455555554331100      000


Q ss_pred             CCcccccCCCCceEEEcC---CCC-EEEEeCCCCEEEEEeC----Ccc----e------EEecCCCCCCCCCCCcccccc
Q 024317           96 GEPGSARFDKPKSFAVDM---KGN-IYVADKSNHVIRKITN----LGV----T------TIAGGGSKKEGRADGPAQNAS  157 (269)
Q Consensus        96 g~~~~~~~~~P~giavd~---~G~-lyVaD~~n~~I~~~~~----~g~----~------~~~g~~~~~~~~~~~~~~~~~  157 (269)
                      ++..-.......||+..+   +|+ ||+.--...+++++..    +..    .      ...|..               
T Consensus       120 ~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k---------------  184 (287)
T PF03022_consen  120 GGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK---------------  184 (287)
T ss_dssp             TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----------------
T ss_pred             cCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecccc---------------
Confidence            111111112245678865   433 9999987788888862    111    1      111110               


Q ss_pred             ccCceEEEEeCCCCEEEEEECCCCeEEEEECCC-----CeEEEecccCccCCCcccceeeeeccceeeEEEec--CCcEE
Q 024317          158 FSNDFELTFVPHICALLISDHGNQLIRQINLKP-----EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF--VARPY  230 (269)
Q Consensus       158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~-----~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~--~g~ly  230 (269)
                      -..-.|+++|++ |+||+++...+.|.++++++     ........+             -.+..|.+++++.  +|.||
T Consensus       185 ~~~s~g~~~D~~-G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~  250 (287)
T PF03022_consen  185 GSQSDGMAIDPN-GNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLW  250 (287)
T ss_dssp             --SECEEEEETT-TEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EE
T ss_pred             CCCCceEEECCC-CcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEE
Confidence            123468999986 99999999999999999998     333332222             0368899999999  99999


Q ss_pred             EEcC
Q 024317          231 IIRH  234 (269)
Q Consensus       231 Vad~  234 (269)
                      |..+
T Consensus       251 v~sn  254 (287)
T PF03022_consen  251 VLSN  254 (287)
T ss_dssp             EEE-
T ss_pred             EEEC
Confidence            9874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.15  E-value=0.00038  Score=60.18  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCc-
Q 024317           57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG-  134 (269)
Q Consensus        57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g-  134 (269)
                      +.+|++....+.|.++|+   .+++.......              -..|.+++++++|. +|++....+.|++++... 
T Consensus         1 ~~~~~s~~~d~~v~~~d~---~t~~~~~~~~~--------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~   63 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDT---ATLEVTRTFPV--------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG   63 (300)
T ss_pred             CcEEEEecCCCEEEEEEC---CCCceEEEEEC--------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            468899988899999975   34443332211              12467899999987 788888888999999654 


Q ss_pred             c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          135 V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       135 ~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      . ......                -..|..+++++++..+|++....++|+.++......
T Consensus        64 ~~~~~~~~----------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        64 EVIGTLPS----------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             cEEEeccC----------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            3 221110                123567888998667899887778999999876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.14  E-value=0.0012  Score=57.02  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n  124 (269)
                      .|.++++++++..+|++....+.|+.+|.   .+++.......              -..|..++++++|+ +|++....
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDL---ATGEVIGTLPS--------------GPDPELFALHPNGKILYIANEDD   94 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEeccC--------------CCCccEEEECCCCCEEEEEcCCC
Confidence            58889998765678999888899999974   34554432211              01356789999887 77887767


Q ss_pred             CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ++|+.++......+.....              -..|.++++++++..++++......+..++......
T Consensus        95 ~~l~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        95 NLVTVIDIETRKVLAEIPV--------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CeEEEEECCCCeEEeEeeC--------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            8999999754321111000              124788999998556666665555677777665443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.09  E-value=0.00045  Score=62.49  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=82.4

Q ss_pred             CCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC--------
Q 024317           56 SSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK--------  122 (269)
Q Consensus        56 ~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~--------  122 (269)
                      ..++||.|..    .++|.++|.   .++++...+..|              ..|+++ +.++|. ||||.+        
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~---~~~~v~g~i~~G--------------~~P~~~-~spDg~~lyva~~~~~R~~~G   73 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDG---EAGRVLGMTDGG--------------FLPNPV-VASDGSFFAHASTVYSRIARG   73 (352)
T ss_pred             CCEEEEECCcccccCceEEEEEC---CCCEEEEEEEcc--------------CCCcee-ECCCCCEEEEEeccccccccC
Confidence            5779999987    389999984   456655544333              288987 989887 999999        


Q ss_pred             -CCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEE
Q 024317          123 -SNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSK  195 (269)
Q Consensus       123 -~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~  195 (269)
                       ..+.|.++|....+.+.....+.      .+.......|..+++++++..|||++.. .+.|-+++.....+..
T Consensus        74 ~~~d~V~v~D~~t~~~~~~i~~p~------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        74 KRTDYVEVIDPQTHLPIADIELPE------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCCEEEEEECccCcEEeEEccCC------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence             88999999975442221111000      0001235678899999997799999976 8899999998876554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.03  E-value=0.0011  Score=60.75  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~  125 (269)
                      +.++++++++..+||++. .+.|.++|+   .++++...+..|              ..|.+++++++|+ +||+++..+
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~---~~~~~v~~i~~G--------------~~~~~i~~s~DG~~~~v~n~~~~  100 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDL---ATGKVVATIKVG--------------GNPRGIAVSPDGKYVYVANYEPG  100 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEET---TSSSEEEEEE-S--------------SEEEEEEE--TTTEEEEEEEETT
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEEC---CcccEEEEEecC--------------CCcceEEEcCCCCEEEEEecCCC
Confidence            455777766678999986 579999997   344444333222              2789999999998 999999999


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .+.++|....   ..+...+...         ...-..+.+|..++.+...+++-...++|+.++............  .
T Consensus       101 ~v~v~D~~tle~v~~I~~~~~~~---------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~  169 (369)
T PF02239_consen  101 TVSVIDAETLEPVKTIPTGGMPV---------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--K  169 (369)
T ss_dssp             EEEEEETTT--EEEEEE--EE-T---------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E
T ss_pred             ceeEeccccccceeecccccccc---------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--c
Confidence            9999996543   3332221100         001134567876776455666777788999998654311110000  0


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEE
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYII  232 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVa  232 (269)
                                 .-..|++..+|++|+.|++
T Consensus       170 -----------~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  170 -----------VGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             -------------TTEEEEEE-TTSSEEEE
T ss_pred             -----------ccccccccccCcccceeee
Confidence                       1155888899999976655

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.93  E-value=0.003  Score=57.19  Aligned_cols=81  Identities=7%  Similarity=-0.103  Sum_probs=58.0

Q ss_pred             CCCCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~  113 (269)
                      ....|.++ +++++..+||+.+         ..+.|..+|.   .++++..-+-.+.      .+.......|..+++++
T Consensus        45 ~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~---~t~~~~~~i~~p~------~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        45 GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP---QTHLPIADIELPE------GPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC---ccCcEEeEEccCC------CchhhccCccceEEECC
Confidence            34589997 7888899999999         8999999984   4555443332211      11112356788999999


Q ss_pred             CCC-EEEEeCC-CCEEEEEeCC
Q 024317          114 KGN-IYVADKS-NHVIRKITNL  133 (269)
Q Consensus       114 ~G~-lyVaD~~-n~~I~~~~~~  133 (269)
                      +|. |||++.. .+.|.++|..
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~  136 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLE  136 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECC
Confidence            997 9999965 7888888854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.89  E-value=0.00039  Score=60.79  Aligned_cols=123  Identities=16%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             ceEEEe--cCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC---
Q 024317           48 HSVIDR--PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK---  122 (269)
Q Consensus        48 ~giav~--~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~---  122 (269)
                      .|+|+.  ...+.||.+|..+++|-++|-    +-+.....|    .+.|.. ..+ =..|-+|.- -.++|||+=.   
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~----~f~~~~~~g----~F~DP~-iPa-gyAPFnIqn-ig~~lyVtYA~qd  209 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKG----SFRPPPLPG----SFIDPA-LPA-GYAPFNVQN-LGGTLYVTYAQQD  209 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecC----ccccccCCC----CccCCC-CCC-CCCCcceEE-ECCeEEEEEEecC
Confidence            445553  225789999999999998852    222111111    122211 011 125666755 4688998743   


Q ss_pred             ----------CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC-----CCEEEEEECCCCeEEE
Q 024317          123 ----------SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-----ICALLISDHGNQLIRQ  185 (269)
Q Consensus       123 ----------~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-----~g~LyVaD~~n~~I~~  185 (269)
                                +.+.|-+||.+|.  .+++..              ..|+.||||++.|.     .|.|+|...+.++|-.
T Consensus       210 ~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~--------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~Ina  275 (336)
T TIGR03118       210 ADRNDEVAGAGLGYVNVFTLNGQLLRRVASS--------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINA  275 (336)
T ss_pred             CcccccccCCCcceEEEEcCCCcEEEEeccC--------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEE
Confidence                      3457889999998  556554              34999999999663     4789999999999999


Q ss_pred             EECC-CCeEEE
Q 024317          186 INLK-PEDCSK  195 (269)
Q Consensus       186 ~~~~-~~~~~~  195 (269)
                      |++. +..+..
T Consensus       276 FD~~sG~~~g~  286 (336)
T TIGR03118       276 YDPQSGAQLGQ  286 (336)
T ss_pred             ecCCCCceeee
Confidence            9986 444433

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.88  E-value=0.00073  Score=61.82  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCc
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG  134 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g  134 (269)
                      .+-+||++.+.+.|..+|.   .+.++...+..+             .+.+.++++.++|+ +||+.. .+.|.++|...
T Consensus         5 ~~l~~V~~~~~~~v~viD~---~t~~~~~~i~~~-------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~   67 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDG---ATNKVVARIPTG-------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLAT   67 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEET---TT-SEEEEEE-S-------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTS
T ss_pred             ccEEEEEecCCCEEEEEEC---CCCeEEEEEcCC-------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCc
Confidence            4556789999999999984   445444333221             11245678888888 999986 57999999654


Q ss_pred             c---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          135 V---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       135 ~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      .   .++.-                 -..|.++++++++..+||++...+.+..++.......
T Consensus        68 ~~~v~~i~~-----------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   68 GKVVATIKV-----------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             SSEEEEEE------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             ccEEEEEec-----------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            3   33322                 2468999999998899999999999999997765433

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.84  E-value=0.00018  Score=62.09  Aligned_cols=79  Identities=16%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..|.+++++|..+++||....+++|..+    +.+|++.....-. .+   -......+..|.|||+|++|+|||+.-
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~----d~~G~~~~~~~L~-~g---~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLEL----DRQGRVVSSLSLD-RG---FHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-----TT--EEEEEE-S-TT---GGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEE----CCCCCEEEEEEeC-Cc---ccCcccccCCccEEEECCCCCEEEEcC
Confidence            566899999999999999999999999999    5688866544210 00   011234678999999999999999986


Q ss_pred             CCCEEEEE
Q 024317          123 SNHVIRKI  130 (269)
Q Consensus       123 ~n~~I~~~  130 (269)
                      . |...+|
T Consensus       241 p-Nlfy~f  247 (248)
T PF06977_consen  241 P-NLFYRF  247 (248)
T ss_dssp             T-TEEEEE
T ss_pred             C-ceEEEe
Confidence            4 466666

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.79  E-value=0.0022  Score=56.67  Aligned_cols=176  Identities=16%  Similarity=0.140  Sum_probs=93.5

Q ss_pred             CcceEEEecCCCeEEEEeCCC------------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~------------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~  113 (269)
                      +..++.+| ..++|||.|.+.            -+|..+|+  ..+..+.++. -...-       ...-..-+++++|.
T Consensus         2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl--~t~~li~~~~-~p~~~-------~~~~s~lndl~VD~   70 (287)
T PF03022_consen    2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDL--KTNQLIRRYP-FPPDI-------APPDSFLNDLVVDV   70 (287)
T ss_dssp             -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEET--TTTCEEEEEE---CCC-------S-TCGGEEEEEEEC
T ss_pred             cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEEC--CCCcEEEEEE-CChHH-------cccccccceEEEEc
Confidence            35788995 799999999863            48999997  3344444432 11100       00122446788987


Q ss_pred             C------CCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCc--cccccc---cCceEEEEeC---CCCEEEEEE
Q 024317          114 K------GNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGP--AQNASF---SNDFELTFVP---HICALLISD  177 (269)
Q Consensus       114 ~------G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~--~~~~~l---~~P~gia~~~---~~g~LyVaD  177 (269)
                      .      +-.|++|....-|.++|- +|+ .++...... .....+.  ..-..|   ....||++++   ++..||..=
T Consensus        71 ~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~-~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~  149 (287)
T PF03022_consen   71 RDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFS-PDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP  149 (287)
T ss_dssp             TTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCT-TS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE
T ss_pred             cCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcc-eeccccceeccCceEecCCCccccccCCCCCCccEEEEEe
Confidence            2      459999999999999994 455 444433111 0000000  000112   2256789877   445899998


Q ss_pred             CCCCeEEEEECCC---CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          178 HGNQLIRQINLKP---EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       178 ~~n~~I~~~~~~~---~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                      ..+.+++++...-   .........     .......+.-.+...|+++|++|+||+++ ..+.+
T Consensus       150 lss~~ly~v~T~~L~~~~~~~~~~~-----~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI  209 (287)
T PF03022_consen  150 LSSRKLYRVPTSVLRDPSLSDAQAL-----ASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAI  209 (287)
T ss_dssp             TT-SEEEEEEHHHHCSTT--HHH-H-----HHT-EEEEE---SECEEEEETTTEEEEEECCCTEE
T ss_pred             CCCCcEEEEEHHHhhCccccccccc-----cccceeccccCCCCceEEECCCCcEEEecCCCCeE
Confidence            8888898887421   111000000     00000011011346899999999999999 33343

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.77  E-value=0.00082  Score=62.73  Aligned_cols=115  Identities=13%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             cCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC------CCEE
Q 024317          102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH------ICAL  173 (269)
Q Consensus       102 ~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~------~g~L  173 (269)
                      .|..|.+|++.++|++||++...++|++++.++.  ..+.+.....        .......+.|||++|+      ++.|
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~--------~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV--------NDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee--------ccCCCCceeeEEECCCccccCCCcEE
Confidence            4889999999999999999987789999987543  3443322110        0011456789999865      3579


Q ss_pred             EEEEC---------CCCeEEEEECCCC------eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          174 LISDH---------GNQLIRQINLKPE------DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       174 yVaD~---------~n~~I~~~~~~~~------~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ||+-+         ...+|.++..+..      ....+...  +.+.         --.-..|+++++|.|||+--+
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l--P~~~---------~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL--PAGN---------DHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC--CCCC---------CcCCceEEECCCCcEEEEECC
Confidence            99842         1468988876532      11111110  0000         011346889999999998744

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.74  E-value=0.00099  Score=63.55  Aligned_cols=80  Identities=13%  Similarity=0.012  Sum_probs=55.3

Q ss_pred             ccccCceEEEEeCCCCEEEEEECCCC-------------------eEEEEECCCC-------eEEEecccCcc---CCCc
Q 024317          156 ASFSNDFELTFVPHICALLISDHGNQ-------------------LIRQINLKPE-------DCSKSSQSGSA---LGAV  206 (269)
Q Consensus       156 ~~l~~P~gia~~~~~g~LyVaD~~n~-------------------~I~~~~~~~~-------~~~~~~~~g~~---~g~~  206 (269)
                      ..|..|-+|+++|..+.+||+-+.+.                   .|+++.+.+.       ....+...+.+   ....
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            35999999999999899999988766                   7999988765       22222211110   0011


Q ss_pred             ccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          207 SVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       207 ~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ........+.+|.+|++|++|+|||++..
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence            11122346799999999999999999943

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.72  E-value=0.00072  Score=64.50  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             CccCCCCcceEEEecCCCeEEEEeCCCC-------------------EEEEEecCCC----CCccEEEEEcCCccc----
Q 024317           40 GHQLEINPHSVIDRPGSSDLIVLDSSRS-------------------AFYTLSFPLS----EESVVKRLAGDGVQG----   92 (269)
Q Consensus        40 g~~~~~~P~giav~~~~g~lyV~D~~~~-------------------~I~~~dl~~~----~~g~~~~~~g~g~~g----   92 (269)
                      |...|..|++|++++.++.+||+-+++.                   +|++++..-.    ...++..+.-.|.+.    
T Consensus       345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~  424 (524)
T PF05787_consen  345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG  424 (524)
T ss_pred             ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc
Confidence            3447899999999999999999987666                   7888864210    001232322222211    


Q ss_pred             CCCCCcccccCCCCceEEEcCCCCEEEEeCCC-CE--EEEEeCCcc
Q 024317           93 YSDGEPGSARFDKPKSFAVDMKGNIYVADKSN-HV--IRKITNLGV  135 (269)
Q Consensus        93 ~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n-~~--I~~~~~~g~  135 (269)
                      ..........|..|..|++|++|+|||+.-.. +.  +.-..++|.
T Consensus       425 ~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~  470 (524)
T PF05787_consen  425 NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGE  470 (524)
T ss_pred             cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCc
Confidence            11122335779999999999999999987432 22  344455555

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.72  E-value=0.0002  Score=60.37  Aligned_cols=88  Identities=13%  Similarity=0.149  Sum_probs=58.8

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...-|.|++++.+...+|+.|+.|..|..+|.+ -+.|.+..-.    .-+.-...+...-..|.|+++|.+|+||||-+
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd-~~tG~~snr~----~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD-CPTGDLSNRK----VIFDLRKSQPFESLEPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecC-CCcccccCcc----eeEEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence            444689999976678899999999999666532 1334322100    00000000111223789999999999999999


Q ss_pred             CCCEEEEEeCC-cc
Q 024317          123 SNHVIRKITNL-GV  135 (269)
Q Consensus       123 ~n~~I~~~~~~-g~  135 (269)
                      ...+|+++|+. |+
T Consensus       231 ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGK  244 (310)
T ss_pred             cCcEEEEECCCCCc
Confidence            99999999974 54

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.55  E-value=0.02  Score=51.45  Aligned_cols=183  Identities=14%  Similarity=0.080  Sum_probs=94.1

Q ss_pred             CCCCcceEEEecCCCeEE-EEeCCC----CEEEEEecCCCCC--ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC
Q 024317           43 LEINPHSVIDRPGSSDLI-VLDSSR----SAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        43 ~~~~P~giav~~~~g~ly-V~D~~~----~~I~~~dl~~~~~--g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      .+..=+||++++.++.+| |+|.+.    -+++.+++..+..  +.+... ....-...+|......---|++|++.++|
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL-DMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec-cceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            344568899964455543 344433    2366665532111  111111 10000001222222122378999998899


Q ss_pred             CEEEEeCCC------CEEEEEeCCcc--eEEecCCCCCCCCC--CCccccccccCceEEEEeCCCCEEEEEECCC-----
Q 024317          116 NIYVADKSN------HVIRKITNLGV--TTIAGGGSKKEGRA--DGPAQNASFSNDFELTFVPHICALLISDHGN-----  180 (269)
Q Consensus       116 ~lyVaD~~n------~~I~~~~~~g~--~~~~g~~~~~~~~~--~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-----  180 (269)
                      .+||++-+.      ++|++++.+|+  ..+.-.........  .+...+   ...-+||+++++..||++-...     
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N---~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNN---RGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCC---CCeEEEEECCCCCEEEEEECccccCCC
Confidence            999999999      99999999987  33311110000000  011111   2357899999855588765543     


Q ss_pred             ----------CeEEEEECCCC--eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          181 ----------QLIRQINLKPE--DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       181 ----------~~I~~~~~~~~--~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                                -||++++....  ....+...-.......      .-..+..++.-++++++|-+..
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~------~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP------GDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCcccccc------CCCCceeEEEECCCcEEEEEcc
Confidence                      35666665531  1111111100000000      1144677888889999999954

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.50  E-value=0.012  Score=51.75  Aligned_cols=169  Identities=10%  Similarity=-0.074  Sum_probs=89.0

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCC-CCcc---EEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS-EESV---VKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~-~~g~---~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      ..|.+|+||+++| .+.+||+|.+.+....+|...+ +.|.   +.. +.+.+         ....-..|.|+++.....
T Consensus        20 p~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~---------~~~~~~~PTGiVfN~~~~   89 (336)
T TIGR03118        20 PGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP---------PLAAEGTPTGQVFNGSDT   89 (336)
T ss_pred             ccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC---------CCCCCCCccEEEEeCCCc
Confidence            4678999999975 8899999999999988865211 1121   111 11110         011123688888865433


Q ss_pred             EEEEeCCC---CEEEEEeCCcc-eEEecCCCCC---C---CCCCCccccccccCceEEEEeCC--CCEEEEEECCCCeEE
Q 024317          117 IYVADKSN---HVIRKITNLGV-TTIAGGGSKK---E---GRADGPAQNASFSNDFELTFVPH--ICALLISDHGNQLIR  184 (269)
Q Consensus       117 lyVaD~~n---~~I~~~~~~g~-~~~~g~~~~~---~---~~~~~~~~~~~l~~P~gia~~~~--~g~LyVaD~~n~~I~  184 (269)
                      .-|+..+.   .+-.....+|. .-+...-...   .   -.+++ ..-+ .  =.|||+-..  ...||.+|..++||-
T Consensus        90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~ga-v--YkGLAi~~~~~~~~LYaadF~~g~ID  165 (336)
T TIGR03118        90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGN-V--YKGLAVGPTGGGDYLYAANFRQGRID  165 (336)
T ss_pred             eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC-CCcc-e--eeeeEEeecCCCceEEEeccCCCceE
Confidence            33333211   11222335555 4443221100   0   00000 0001 1  147777632  468999999999999


Q ss_pred             EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      +|+..-..+...+..  ..-   ..+++   ..|.+|..- .++|||+=
T Consensus       166 VFd~~f~~~~~~g~F--~DP---~iPag---yAPFnIqni-g~~lyVtY  205 (336)
T TIGR03118       166 VFKGSFRPPPLPGSF--IDP---ALPAG---YAPFNVQNL-GGTLYVTY  205 (336)
T ss_pred             EecCccccccCCCCc--cCC---CCCCC---CCCcceEEE-CCeEEEEE
Confidence            998766554432211  110   11222   457777655 47888774

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.48  E-value=0.016  Score=52.00  Aligned_cols=132  Identities=15%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             CcceEEEecCCCeEEEEeCCC------CEEEEEecCCCCCccEEEEEcCCcccCC---CCCcccccCCCCceEEEcCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSR------SAFYTLSFPLSEESVVKRLAGDGVQGYS---DGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~------~~I~~~dl~~~~~g~~~~~~g~g~~g~~---dg~~~~~~~~~P~giavd~~G~  116 (269)
                      .|++|++ +.++.+||++.+.      ++|++++    .+|++.....-.. .+.   .+......=...++|++.++|.
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~----~~G~~~~~~~vP~-~~~~~~~~~~~~~~N~G~E~la~~~dG~  159 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFD----LDGRVIRRFPVPA-AFLPDANGTSGRRNNRGFEGLAVSPDGR  159 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEEC----CCCcccceEcccc-ccccccCccccccCCCCeEEEEECCCCC
Confidence            8899999 6799999999999      9999994    5577644332111 010   0001111122458899999999


Q ss_pred             -EEEEeCCC---------------CEEEEEeCC--cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE
Q 024317          117 -IYVADKSN---------------HVIRKITNL--GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS  176 (269)
Q Consensus       117 -lyVaD~~n---------------~~I~~~~~~--g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa  176 (269)
                       ||++-...               .||.+++..  +.  ..+.-.-..       ......-..+++++..++ +.|||.
T Consensus       160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~-------~~~~~~~~~isd~~al~d-~~lLvL  231 (326)
T PF13449_consen  160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDP-------PPTAPGDNGISDIAALPD-GRLLVL  231 (326)
T ss_pred             EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCc-------cccccCCCCceeEEEECC-CcEEEE
Confidence             88876432               466777754  31  111111000       000002456788888887 789999


Q ss_pred             ECC-------CCeEEEEECCCC
Q 024317          177 DHG-------NQLIRQINLKPE  191 (269)
Q Consensus       177 D~~-------n~~I~~~~~~~~  191 (269)
                      +..       ..+|++++....
T Consensus       232 ER~~~~~~~~~~ri~~v~l~~a  253 (326)
T PF13449_consen  232 ERDFSPGTGNYKRIYRVDLSDA  253 (326)
T ss_pred             EccCCCCccceEEEEEEEcccc
Confidence            987       345777776543

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.006  Score=55.91  Aligned_cols=183  Identities=14%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEE-EEEecCCCCCccEEEEEcCCcccC-CC---CCcccccCCCCceEEEcCC-CCEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAF-YTLSFPLSEESVVKRLAGDGVQGY-SD---GEPGSARFDKPKSFAVDMK-GNIYV  119 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I-~~~dl~~~~~g~~~~~~g~g~~g~-~d---g~~~~~~~~~P~giavd~~-G~lyV  119 (269)
                      +-..|+++| +|.|||+-..+..- ..-|.. +..|++...--.+.-.. .+   ...-...+..|.|+++++. |.||+
T Consensus       178 ~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~-~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~  255 (399)
T COG2133         178 FGGRLVFGP-DGKLYVTTGSNGDPALAQDNV-SLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT  255 (399)
T ss_pred             CcccEEECC-CCcEEEEeCCCCCcccccCcc-ccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence            445688875 67999996544111 110100 23343333221111000 01   1112345789999999996 99999


Q ss_pred             EeCCCCEEEEEe-----CCcc-----eEEecCCCCCCCCCCC----cccccc-----ccCceEEEEeCCC------CEEE
Q 024317          120 ADKSNHVIRKIT-----NLGV-----TTIAGGGSKKEGRADG----PAQNAS-----FSNDFELTFVPHI------CALL  174 (269)
Q Consensus       120 aD~~n~~I~~~~-----~~g~-----~~~~g~~~~~~~~~~~----~~~~~~-----l~~P~gia~~~~~------g~Ly  174 (269)
                      +|-+...++--|     +.|.     ....|..-.+....++    ......     -..|.||++-.-+      +.++
T Consensus       256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf  335 (399)
T COG2133         256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF  335 (399)
T ss_pred             EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence            997764442111     2222     1111211111101111    000011     1346899987422      6899


Q ss_pred             EEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC--CCCccc
Q 024317          175 ISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH--TGRLDP  240 (269)
Q Consensus       175 VaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~--~g~~~~  240 (269)
                      |+..+...+.+.+++++........  -.+ .       .-.+|.++++.+||.|||+|.  +|++++
T Consensus       336 V~~hgsw~~~~~~~~g~~~~~~~~f--l~~-d-------~~gR~~dV~v~~DGallv~~D~~~g~i~R  393 (399)
T COG2133         336 VGAHGSWPVLRLRPDGNYKVVLTGF--LSG-D-------LGGRPRDVAVAPDGALLVLTDQGDGRILR  393 (399)
T ss_pred             EEeecceeEEEeccCCCcceEEEEE--Eec-C-------CCCcccceEECCCCeEEEeecCCCCeEEE
Confidence            9999888788888888733222211  010 0       116899999999999999994  445553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.43  E-value=0.0092  Score=50.54  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=60.1

Q ss_pred             ccCCCCceEEEcCCCC-EEEEeCCCCEEEEEe---CCcc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCE
Q 024317          101 ARFDKPKSFAVDMKGN-IYVADKSNHVIRKIT---NLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICA  172 (269)
Q Consensus       101 ~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~---~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~  172 (269)
                      ..+.-|+|++.|.+-. .|+.|+.|..|..++   +.|.    ..+.......         .-.-..|.|+++|.+ |+
T Consensus       155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---------~~e~~~PDGm~ID~e-G~  224 (310)
T KOG4499|consen  155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---------PFESLEPDGMTIDTE-GN  224 (310)
T ss_pred             hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---------CcCCCCCCcceEccC-Cc
Confidence            4466789999997554 999999999996665   3342    2333221100         011246899999986 99


Q ss_pred             EEEEECCCCeEEEEECCCCeEEE
Q 024317          173 LLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       173 LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      |||+-..+++|+++++..+.+..
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L~  247 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKILL  247 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEEE
Confidence            99999999999999988765443

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.41  E-value=0.0024  Score=60.16  Aligned_cols=85  Identities=13%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             CccCCCCcceEEEecCCCeEEEEeCCCC----------------EEEEEecC----CCCCccEEEEEcCCcccCCCC---
Q 024317           40 GHQLEINPHSVIDRPGSSDLIVLDSSRS----------------AFYTLSFP----LSEESVVKRLAGDGVQGYSDG---   96 (269)
Q Consensus        40 g~~~~~~P~giav~~~~g~lyV~D~~~~----------------~I~~~dl~----~~~~g~~~~~~g~g~~g~~dg---   96 (269)
                      |...+..|++|++.|..+++|++.++|.                +|++|--.    .+...+...+.-.|.+...++   
T Consensus       412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             CCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            4457889999999988899999998776                35555211    011123333332222211111   


Q ss_pred             -CcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           97 -EPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        97 -~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                       ......|++|.+|++|+.|+|||+.-++
T Consensus       492 ~~~~~~~f~~PDnl~fD~~GrLWi~TDg~  520 (616)
T COG3211         492 ANINANWFNSPDNLAFDPWGRLWIQTDGS  520 (616)
T ss_pred             cCcccccccCCCceEECCCCCEEEEecCC
Confidence             1112669999999999999999987543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.23  E-value=0.013  Score=56.36  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECC
Q 024317          103 FDKPKSFAVDMKGN-IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       103 ~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      =.+|.||+++++|. +|++....+.|.++|.... ..+.+.-..    .+. .+....=..|...+++++ |+.|++=..
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~----~~~vvaevevGlGPLHTaFDg~-G~aytslf~  394 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP----RDAVVAEPELGLGPLHTAFDGR-GNAYTTLFL  394 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc----cceEEEeeccCCCcceEEECCC-CCEEEeEee
Confidence            35899999999999 9999998999999997654 333332100    000 000111247999999997 889999888


Q ss_pred             CCeEEEEECCC
Q 024317          180 NQLIRQINLKP  190 (269)
Q Consensus       180 n~~I~~~~~~~  190 (269)
                      ...|.+|+.+.
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            89999999876

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.15  E-value=0.018  Score=55.50  Aligned_cols=62  Identities=11%  Similarity=0.090  Sum_probs=47.1

Q ss_pred             cCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE----------EEecccCccCCCcccceeeeeccceeeEEEecCCc
Q 024317          159 SNDFELTFVPHICALLISDHGNQLIRQINLKPEDC----------SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR  228 (269)
Q Consensus       159 ~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~----------~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~  228 (269)
                      .+|+|++++|++..+||+....+.|.+|+......          ...++.  ..|           ..|.-.++|.+|+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev--evG-----------lGPLHTaFDg~G~  387 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP--ELG-----------LGPLHTAFDGRGN  387 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee--ccC-----------CCcceEEECCCCC
Confidence            67999999999889999999999999999876332          111111  111           4588899999999


Q ss_pred             EEEEc
Q 024317          229 PYIIR  233 (269)
Q Consensus       229 lyVad  233 (269)
                      .|++=
T Consensus       388 aytsl  392 (635)
T PRK02888        388 AYTTL  392 (635)
T ss_pred             EEEeE
Confidence            99885

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.10  E-value=0.041  Score=53.44  Aligned_cols=165  Identities=11%  Similarity=0.032  Sum_probs=109.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..-..++++| +|.+.++-...++|..||   ...|........             +-+.-.++.+...|+..++-.
T Consensus       349 H~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn---~~SgfC~vTFte-------------Hts~Vt~v~f~~~g~~llssS  411 (893)
T KOG0291|consen  349 HSDRITSLAYSP-DGQLIATGAEDGKVKVWN---TQSGFCFVTFTE-------------HTSGVTAVQFTARGNVLLSSS  411 (893)
T ss_pred             cccceeeEEECC-CCcEEEeccCCCcEEEEe---ccCceEEEEecc-------------CCCceEEEEEEecCCEEEEee
Confidence            355667788864 788888888888888887   456654443222             233447899999999999999


Q ss_pred             CCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-CCCeEEEEECCCCeEEEecc
Q 024317          123 SNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-GNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       123 ~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-~n~~I~~~~~~~~~~~~~~~  198 (269)
                      -.++|+.+|- ..+  +++....            ..+|   ++||+||. |.|.++-. ..-.|.+++...+.+.-.-.
T Consensus       412 LDGtVRAwDlkRYrNfRTft~P~------------p~Qf---scvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  412 LDGTVRAWDLKRYRNFRTFTSPE------------PIQF---SCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             cCCeEEeeeecccceeeeecCCC------------ceee---eEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhc
Confidence            9999999983 444  5554321            1223   68999997 66665544 45568888877665543322


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc--ccccccccCCCC
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL--QHDMEALPNQSG  254 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~--~~~~~~~~~~~~  254 (269)
                      .+   .           ....++++++.|.+.++-   .+.|+|.-.  .+..|.++..+.
T Consensus       476 GH---E-----------gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd  522 (893)
T KOG0291|consen  476 GH---E-----------GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD  522 (893)
T ss_pred             CC---C-----------CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence            20   0           224678999999776665   678888766  346666665543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=97.01  E-value=0.01  Score=42.51  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=29.5

Q ss_pred             ccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          158 FSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       158 l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      |..|+||++++++..|||++...+.|+++...
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            88999999999989999999999999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.99  E-value=0.0024  Score=38.75  Aligned_cols=35  Identities=20%  Similarity=0.110  Sum_probs=31.9

Q ss_pred             cccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          157 SFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       157 ~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .+..|++|++++.++.||.+|...+.|.+.+.+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            37889999999998999999999999999998875

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.87  E-value=0.13  Score=44.70  Aligned_cols=156  Identities=13%  Similarity=0.076  Sum_probs=90.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      +-+||++  .++.||..-+.++..+++|..  .-..+.++.-.               ....|++.| ...||++|. ++
T Consensus        91 FgEGit~--~~d~l~qLTWk~~~~f~yd~~--tl~~~~~~~y~---------------~EGWGLt~d-g~~Li~SDG-S~  149 (264)
T PF05096_consen   91 FGEGITI--LGDKLYQLTWKEGTGFVYDPN--TLKKIGTFPYP---------------GEGWGLTSD-GKRLIMSDG-SS  149 (264)
T ss_dssp             -EEEEEE--ETTEEEEEESSSSEEEEEETT--TTEEEEEEE-S---------------SS--EEEEC-SSCEEEE-S-SS
T ss_pred             cceeEEE--ECCEEEEEEecCCeEEEEccc--cceEEEEEecC---------------CcceEEEcC-CCEEEEECC-cc
Confidence            5688998  589999999999999999852  22223333211               133678864 446999996 78


Q ss_pred             EEEEEeCCcc---eEE--ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317          126 VIRKITNLGV---TTI--AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       126 ~I~~~~~~g~---~~~--~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      +++.+||..-   .++  ...+             ..+..-|-|-..  +|.||.--...++|.+|++..+.+...-.-.
T Consensus       150 ~L~~~dP~~f~~~~~i~V~~~g-------------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls  214 (264)
T PF05096_consen  150 RLYFLDPETFKEVRTIQVTDNG-------------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLS  214 (264)
T ss_dssp             EEEEE-TTT-SEEEEEE-EETT-------------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred             ceEEECCcccceEEEEEEEECC-------------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence            9999998642   222  1111             113444566655  3899999999999999999998876644221


Q ss_pred             ---ccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317          201 ---SALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL  242 (269)
Q Consensus       201 ---~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~  242 (269)
                         ........  ....-...+|||.|+.. ++||+   |..|...
T Consensus       215 ~L~~~~~~~~~--~~~~~dVLNGIAyd~~~~~l~vT---GK~Wp~l  255 (264)
T PF05096_consen  215 GLRPEVGRDKS--RQPDDDVLNGIAYDPETDRLFVT---GKLWPKL  255 (264)
T ss_dssp             HHHHHHTSTTS--T--TTS-EEEEEEETTTTEEEEE---ETT-SEE
T ss_pred             Hhhhccccccc--ccccCCeeEeEeEeCCCCEEEEE---eCCCCce
Confidence               00000000  00012458999999777 88887   4445443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.86  E-value=0.21  Score=41.52  Aligned_cols=111  Identities=17%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...+++.+ ++.++++....+.|..+|+.   +++......             ..-..+..+++++++.++++-..++.
T Consensus        96 i~~~~~~~-~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          96 VSSVAFSP-DGRILSSSSRDKTIKVWDVE---TGKCLTTLR-------------GHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             EEEEEEcC-CCCEEEEecCCCeEEEEECC---CcEEEEEec-------------cCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            45566643 35555555556666666541   222222110             11224678889888887776666778


Q ss_pred             EEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          127 IRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       127 I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      |+.++.. +.  ..+...                -.....+++++++..++++.. ++.|+.++....
T Consensus       159 i~i~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~  209 (289)
T cd00200         159 IKLWDLRTGKCVATLTGH----------------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG  209 (289)
T ss_pred             EEEEEccccccceeEecC----------------ccccceEEECCCcCEEEEecC-CCcEEEEECCCC
Confidence            8888864 33  222211                124578898887446777665 788999998754

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.84  E-value=0.0059  Score=37.51  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CCEEEEeCCCC-EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeC
Q 024317          115 GNIYVADKSNH-VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVP  168 (269)
Q Consensus       115 G~lyVaD~~n~-~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~  168 (269)
                      ++||.+|...+ +|.+.+.+|.  ..+...               .+..|.|||+++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 9999999998  555432               288999999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.023  Score=52.14  Aligned_cols=135  Identities=15%  Similarity=0.139  Sum_probs=77.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEec-CCCCCccEE----EEEcCCcccCC-CCCccc----------ccCCCCc
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF-PLSEESVVK----RLAGDGVQGYS-DGEPGS----------ARFDKPK  107 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl-~~~~~g~~~----~~~g~g~~g~~-dg~~~~----------~~~~~P~  107 (269)
                      ..+|.|++++|..|.||+++.+...+.--|- ..-+.|...    ...|.-..+.. ......          ..-..|.
T Consensus       238 ~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~Aps  317 (399)
T COG2133         238 HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPS  317 (399)
T ss_pred             cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccc
Confidence            4589999999888999999987755411110 000112111    00010000000 000001          1123568


Q ss_pred             eEEEcCC-------CCEEEEeCCCCEEEEEeCCcc-eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317          108 SFAVDMK-------GNIYVADKSNHVIRKITNLGV-TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH  178 (269)
Q Consensus       108 giavd~~-------G~lyVaD~~n~~I~~~~~~g~-~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~  178 (269)
                      ||++-.-       +.+||+--+.-.+.+.+++|. +.+ .+.-...           .-..|.+|++.+| |.|||+|-
T Consensus       318 GmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d-----------~~gR~~dV~v~~D-Gallv~~D  385 (399)
T COG2133         318 GMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGD-----------LGGRPRDVAVAPD-GALLVLTD  385 (399)
T ss_pred             eeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecC-----------CCCcccceEECCC-CeEEEeec
Confidence            9999532       579999877766777888876 222 2211000           0157999999998 89998888


Q ss_pred             C-CCeEEEEECCC
Q 024317          179 G-NQLIRQINLKP  190 (269)
Q Consensus       179 ~-n~~I~~~~~~~  190 (269)
                      . +++|+|++..+
T Consensus       386 ~~~g~i~Rv~~~~  398 (399)
T COG2133         386 QGDGRILRVSYAG  398 (399)
T ss_pred             CCCCeEEEecCCC
Confidence            7 77999998654

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=96.73  E-value=0.029  Score=57.17  Aligned_cols=147  Identities=17%  Similarity=0.117  Sum_probs=106.1

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      ...|.+++++-..+++|.+|.....|.+.++    +|.. .+++.             ..+..|..+++++ .|.+|.+|
T Consensus       479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~----~g~~~~vl~~-------------~~l~~~r~~~v~p~~g~~~wtd  541 (877)
T KOG1215|consen  479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADL----DGSSRKVLVS-------------KDLDLPRSIAVDPEKGLMFWTD  541 (877)
T ss_pred             ccccCcEEEEeccCCceecccCCceeEEEEc----cCCceeEEEe-------------cCCCCccceeeccccCeeEEec
Confidence            4579999998778999999999999998854    3322 22221             1246899999998 77899999


Q ss_pred             CC-CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC-eEEEEECCCCeEEEec
Q 024317          122 KS-NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ-LIRQINLKPEDCSKSS  197 (269)
Q Consensus       122 ~~-n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~-~I~~~~~~~~~~~~~~  197 (269)
                      .+ ..+|.+-..+|.  ..+...               .+..|+|++++-....+|-+|.... .|.+++.++.......
T Consensus       542 ~~~~~~i~ra~~dg~~~~~l~~~---------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~  606 (877)
T KOG1215|consen  542 WGQPPRIERASLDGSERAVLVTN---------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD  606 (877)
T ss_pred             CCCCchhhhhcCCCCCceEEEeC---------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec
Confidence            87 457777778887  333322               1578999999998899999999888 6888888887664111


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR  237 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~  237 (269)
                      ..              .+..|.++++- ..++|-.|-..+
T Consensus       607 ~~--------------~~~~p~~~~~~-~~~iyw~d~~~~  631 (877)
T KOG1215|consen  607 SE--------------DLPHPFGLSVF-EDYIYWTDWSNR  631 (877)
T ss_pred             cc--------------cCCCceEEEEe-cceeEEeecccc
Confidence            11              33557777777 456777774433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.68  E-value=0.11  Score=45.02  Aligned_cols=110  Identities=10%  Similarity=-0.013  Sum_probs=73.8

Q ss_pred             CCCcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      -.+-.|+.+. .+|.+|.+...  ..+|.++|+   .+|++.....-.            .-.+-.||++ -++.||..-
T Consensus        44 ~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~---~tg~~~~~~~l~------------~~~FgEGit~-~~d~l~qLT  106 (264)
T PF05096_consen   44 TAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDL---ETGKVLQSVPLP------------PRYFGEGITI-LGDKLYQLT  106 (264)
T ss_dssp             T-EEEEEEEE-ETTEEEEEECSTTEEEEEEEET---TTSSEEEEEE-T------------TT--EEEEEE-ETTEEEEEE
T ss_pred             cccCccEEec-CCCEEEEeCCCCCcEEEEEEEC---CCCcEEEEEECC------------ccccceeEEE-ECCEEEEEE
Confidence            3467899984 47999999874  457999986   466665443211            1125589999 477899999


Q ss_pred             CCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          122 KSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       122 ~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      +.+++..++|++.-   .++.-.                 ..-+||+.+.  ..||++|. +.+|+.+++..
T Consensus       107 Wk~~~~f~yd~~tl~~~~~~~y~-----------------~EGWGLt~dg--~~Li~SDG-S~~L~~~dP~~  158 (264)
T PF05096_consen  107 WKEGTGFVYDPNTLKKIGTFPYP-----------------GEGWGLTSDG--KRLIMSDG-SSRLYFLDPET  158 (264)
T ss_dssp             SSSSEEEEEETTTTEEEEEEE-S-----------------SS--EEEECS--SCEEEE-S-SSEEEEE-TTT
T ss_pred             ecCCeEEEEccccceEEEEEecC-----------------CcceEEEcCC--CEEEEECC-ccceEEECCcc
Confidence            99999999998754   222111                 2358999553  68999997 67899999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.47  Score=41.69  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      .-.+|.++| .++.|++-+....|+.||++. ++-+..                 ..+..+--.|+|++|.+|.+-.+++
T Consensus       102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~-~~cqg~-----------------l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV-KKCQGL-----------------LNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             eEEEEEecC-CCCeEEecccCCeEEeeEecC-CCCceE-----------------EecCCCcceeECCCCcEEEEecCCC
Confidence            457788887 558999988888999998752 111111                 1233555699999999999988888


Q ss_pred             EEEEEeCCc----c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          126 VIRKITNLG----V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       126 ~I~~~~~~g----~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      .|..+|...    - .++.- ..            .....=++|-+++++..|+++.. ++.++.++.=.
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i-~~------------~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~  218 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSI-TD------------NDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD  218 (311)
T ss_pred             eEEEEEecccCCCCceeEcc-CC------------CCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC
Confidence            999998421    1 22111 00            11233468999998667777766 45677776433

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.57  E-value=0.014  Score=35.75  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             CEEEEEECCCC-eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec
Q 024317          171 CALLISDHGNQ-LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF  225 (269)
Q Consensus       171 g~LyVaD~~n~-~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~  225 (269)
                      ++||.+|...+ +|.+.+.+|.........              .+..|.|||+|.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~--------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISD--------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEES--------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEEC--------------CCCCcCEEEECC
Confidence            47999999999 999999999875544433              358899999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.46  E-value=0.029  Score=53.08  Aligned_cols=129  Identities=16%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             ccCCCCceEEEcC-CCCEEEEeCCCC----------------EEEEEeCCc--------c-eEEecCCCCC--CCCCCCc
Q 024317          101 ARFDKPKSFAVDM-KGNIYVADKSNH----------------VIRKITNLG--------V-TTIAGGGSKK--EGRADGP  152 (269)
Q Consensus       101 ~~~~~P~giavd~-~G~lyVaD~~n~----------------~I~~~~~~g--------~-~~~~g~~~~~--~~~~~~~  152 (269)
                      ..+.+|++|++.+ .|++|++.+.|.                +|.++-+..        . ..++-.+...  -......
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~  493 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN  493 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence            5589999999987 678999998765                345444322        2 2222111111  0000111


Q ss_pred             cccccccCceEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEE
Q 024317          153 AQNASFSNDFELTFVPHICALLISDHGNQL-IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPY  230 (269)
Q Consensus       153 ~~~~~l~~P~gia~~~~~g~LyVaD~~n~~-I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~ly  230 (269)
                      ....-|..|.+|++++. |+|||+.-++.. ..-+ .+|-.  .....+...+.......+..-+...|.|+.+|+ .+|
T Consensus       494 ~~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~-~~G~~--~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         494 INANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNR-FRGVT--QMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             cccccccCCCceEECCC-CCEEEEecCCCCccCcc-ccccc--ccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence            22245899999999998 889876544321 1110 00100  000010111211111122122457899999999 666


Q ss_pred             EEc
Q 024317          231 IIR  233 (269)
Q Consensus       231 Vad  233 (269)
                      |.=
T Consensus       570 V~v  572 (616)
T COG3211         570 VNV  572 (616)
T ss_pred             EEe
Confidence            653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.45  E-value=0.16  Score=46.44  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             CCCCcceEEEe--cCCCeEEE--EeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCE
Q 024317           43 LEINPHSVIDR--PGSSDLIV--LDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNI  117 (269)
Q Consensus        43 ~~~~P~giav~--~~~g~lyV--~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~l  117 (269)
                      .+..|+|+|+.  +..|.+|+  .+. .+++..+.+..+.+|.+....   ...+       ..-..|+|+++|. .|.|
T Consensus       154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~l---VR~f-------~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATL---VREF-------KVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEE---EEEE-------E-SS-EEEEEEETTTTEE
T ss_pred             ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEE---EEEe-------cCCCcceEEEEecccCCE
Confidence            34568999974  33455544  443 467777766434455432110   0000       0123689999997 6779


Q ss_pred             EEEeCCCCEEEEEeCC--c-c--eEEecCCCCCCCCCCCccccccc-cCceEEEEeC---CCCEEEEEECCCCeEEEEEC
Q 024317          118 YVADKSNHVIRKITNL--G-V--TTIAGGGSKKEGRADGPAQNASF-SNDFELTFVP---HICALLISDHGNQLIRQINL  188 (269)
Q Consensus       118 yVaD~~n~~I~~~~~~--g-~--~~~~g~~~~~~~~~~~~~~~~~l-~~P~gia~~~---~~g~LyVaD~~n~~I~~~~~  188 (269)
                      ||++- +.-|++++.+  + .  ..+......            .| .-.-||++-.   ..|+|+|++.+++...+|+.
T Consensus       223 YvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~------------~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  223 YVGEE-DVGIWRYDAEPEGGNDRTLVASADGD------------GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEET-TTEEEEEESSCCC-S--EEEEEBSSS------------SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             EEecC-ccEEEEEecCCCCCCcceeeeccccc------------ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            99996 5789999854  3 2  233211111            12 2457888843   24789999999999999998


Q ss_pred             CCC
Q 024317          189 KPE  191 (269)
Q Consensus       189 ~~~  191 (269)
                      .+.
T Consensus       290 ~~~  292 (381)
T PF02333_consen  290 EGP  292 (381)
T ss_dssp             STT
T ss_pred             CCC
Confidence            874

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.36  Score=45.43  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=81.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -.++++.+ ++.+.++-+...+|+.+|+  ..++. +.++.|.              .+...++++.++|+++++=...+
T Consensus       206 v~~~~fs~-d~~~l~s~s~D~tiriwd~--~~~~~~~~~l~gH--------------~~~v~~~~f~p~g~~i~Sgs~D~  268 (456)
T KOG0266|consen  206 VSDVAFSP-DGSYLLSGSDDKTLRIWDL--KDDGRNLKTLKGH--------------STYVTSVAFSPDGNLLVSGSDDG  268 (456)
T ss_pred             eeeeEECC-CCcEEEEecCCceEEEeec--cCCCeEEEEecCC--------------CCceEEEEecCCCCEEEEecCCC
Confidence            46678864 7777888778888888875  34544 4455433              34558899999999999888889


Q ss_pred             EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .|+..+.. |+  ..+.+..                ..-++++++++ ++++++-...+.|+.++......
T Consensus       269 tvriWd~~~~~~~~~l~~hs----------------~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHS----------------DGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             cEEEEeccCCeEEEeeeccC----------------CceEEEEECCC-CCEEEEcCCCccEEEEECCCCce
Confidence            99999854 44  4444432                23478999998 55555556689999999988874

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.40  E-value=0.36  Score=42.84  Aligned_cols=145  Identities=11%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCC--ccc---ccCCCCceEEEcCCCC
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGE--PGS---ARFDKPKSFAVDMKGN  116 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~--~~~---~~~~~P~giavd~~G~  116 (269)
                      ..|..|.|+++  ..+.||++-  ..+|+++..   .+....  .+....+| |.-  +..   ..--.-++|++ .++.
T Consensus        46 r~F~r~MGl~~--~~~~l~~~t--~~qiw~f~~---~~n~l~--~~~~~~~~-D~~yvPr~~~~TGdidiHdia~-~~~~  114 (335)
T TIGR03032        46 RTFPRPMGLAV--SPQSLTLGT--RYQLWRFAN---VDNLLP--AGQTHPGY-DRLYVPRASYVTGDIDAHDLAL-GAGR  114 (335)
T ss_pred             eccCccceeee--eCCeEEEEE--cceeEEccc---cccccc--ccccCCCC-CeEEeeeeeeeccCcchhheee-cCCc
Confidence            46889999999  479999997  577887710   011000  00000011 000  000   01113467888 6788


Q ss_pred             EEEEeCCCCEEEEEeCCcc-e-EE----ecC---------------------------CCCCCCCCC-----C-------
Q 024317          117 IYVADKSNHVIRKITNLGV-T-TI----AGG---------------------------GSKKEGRAD-----G-------  151 (269)
Q Consensus       117 lyVaD~~n~~I~~~~~~g~-~-~~----~g~---------------------------~~~~~~~~~-----~-------  151 (269)
                      +||.++.-+++-.+++... . .+    +..                           .....+..+     |       
T Consensus       115 l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s  194 (335)
T TIGR03032       115 LLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPS  194 (335)
T ss_pred             EEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCC
Confidence            9999988788887776543 1 11    110                           000000000     0       


Q ss_pred             -ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC-CCeEEEeccc
Q 024317          152 -PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK-PEDCSKSSQS  199 (269)
Q Consensus       152 -~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~-~~~~~~~~~~  199 (269)
                       ......|..|.+--.-  +|.|||+|.+.+.|.+++++ |.......-+
T Consensus       195 ~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp  242 (335)
T TIGR03032       195 GEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP  242 (335)
T ss_pred             CCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC
Confidence             0111124555555432  38999999999999999997 6655554444

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=96.32  E-value=0.07  Score=54.40  Aligned_cols=143  Identities=18%  Similarity=0.186  Sum_probs=101.1

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~  123 (269)
                      .+..+.++..++.+|-+|..-.+|.+..    .++.... +.+             .....|.++++|- .+++|.+|..
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~----~~~~~~~~~~~-------------~g~~~~~~lavD~~~~~~y~tDe~  500 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRAS----QDGSSECELCG-------------DGLCIPEGLAVDWIGDNIYWTDEG  500 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeec----cCCCccceEec-------------cCccccCcEEEEeccCCceecccC
Confidence            4444455445678888888888888763    2332221 222             2356889999997 7779999999


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEecccC
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      +..|.+.+.+|.  ..+....               +..|..++++|..+.+|.+|.+ ..+|-+-..++......... 
T Consensus       501 ~~~i~v~~~~g~~~~vl~~~~---------------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~-  564 (877)
T KOG1215|consen  501 NCLIEVADLDGSSRKVLVSKD---------------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN-  564 (877)
T ss_pred             CceeEEEEccCCceeEEEecC---------------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC-
Confidence            999999997775  4444431               4679999999999999999997 44687877777655443333 


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH  234 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~  234 (269)
                                   .+..|.|++.|... .+|-+|.
T Consensus       565 -------------~~~~p~glt~d~~~~~~yw~d~  586 (877)
T KOG1215|consen  565 -------------GILWPNGLTIDYETDRLYWADA  586 (877)
T ss_pred             -------------CccCCCcceEEeecceeEEEcc
Confidence                         13558888888776 7888873

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.24  E-value=0.14  Score=44.81  Aligned_cols=127  Identities=9%  Similarity=0.084  Sum_probs=76.6

Q ss_pred             CcceEEEecCCCeEEEEeCCC-CEEEEEecCCCCCccEEEEEcCCcccCCCCCc-ccccCCCCceEEEcC-CCCEEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEP-GSARFDKPKSFAVDM-KGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~-~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~-~~~~~~~P~giavd~-~G~lyVaD~  122 (269)
                      .=+|+|.++.+..+||+-..+ -+|+.++.  +++.--.....       +-.. ..-.+..-.|+.+|+ .+.|+|.-.
T Consensus       182 GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~--~~~~l~~~~~~-------~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~  252 (316)
T COG3204         182 GFEGLAWDPVDHRLFVAKERNPIGIFEVTQ--SPSSLSVHASL-------DPTADRDLFVLDVSGLEFNAITNSLLVLSD  252 (316)
T ss_pred             CceeeecCCCCceEEEEEccCCcEEEEEec--CCccccccccc-------CcccccceEeeccccceecCCCCcEEEEec
Confidence            457899988888899986543 56776642  11111111100       0000 011244557788886 677999888


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      ..+++..++.+|. ......-.+..+      ......+|.|||.|++ |+|||+..- +..++|.+.
T Consensus       253 ESr~l~Evd~~G~~~~~lsL~~g~~g------L~~dipqaEGiamDd~-g~lYIvSEP-nlfy~F~~~  312 (316)
T COG3204         253 ESRRLLEVDLSGEVIELLSLTKGNHG------LSSDIPQAEGIAMDDD-GNLYIVSEP-NLFYRFTPQ  312 (316)
T ss_pred             CCceEEEEecCCCeeeeEEeccCCCC------CcccCCCcceeEECCC-CCEEEEecC-CcceecccC
Confidence            8999999999887 222222111111      1123567899999987 999987764 457777654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=96.19  E-value=0.033  Score=39.89  Aligned_cols=53  Identities=19%  Similarity=0.152  Sum_probs=43.7

Q ss_pred             hhhhccceecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEec
Q 024317           19 FSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF   74 (269)
Q Consensus        19 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl   74 (269)
                      +.+.-+.+..-++..++...+|   +..|.||++++++..|||++...+.|..++.
T Consensus        31 l~~~~~~Vvyyd~~~~~~va~g---~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   31 LGLPWGNVVYYDGKEVKVVASG---FSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             hcCCCceEEEEeCCEeEEeecc---CCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3446777888888888887654   5699999999888999999999999998853

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.06  E-value=0.59  Score=45.79  Aligned_cols=112  Identities=16%  Similarity=0.205  Sum_probs=75.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC-CC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK-SN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~-~n  124 (269)
                      .-+++.+. ..++..++.+-.++|..+|+.  .-..+.++...          ...+|   ..+++|+.|.|.+|-. ..
T Consensus       394 ~Vt~v~f~-~~g~~llssSLDGtVRAwDlk--RYrNfRTft~P----------~p~Qf---scvavD~sGelV~AG~~d~  457 (893)
T KOG0291|consen  394 GVTAVQFT-ARGNVLLSSSLDGTVRAWDLK--RYRNFRTFTSP----------EPIQF---SCVAVDPSGELVCAGAQDS  457 (893)
T ss_pred             ceEEEEEE-ecCCEEEEeecCCeEEeeeec--ccceeeeecCC----------Cceee---eEEEEcCCCCEEEeeccce
Confidence            45667785 689999999999999999862  22223333211          11222   4699999999777654 45


Q ss_pred             CEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          125 HVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       125 ~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ..|.+++ +.|+  ..+.|...+                ..+|++++. ++++++-.-...|+.++.-.
T Consensus       458 F~IfvWS~qTGqllDiLsGHEgP----------------Vs~l~f~~~-~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDILSGHEGP----------------VSGLSFSPD-GSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             EEEEEEEeecCeeeehhcCCCCc----------------ceeeEEccc-cCeEEeccccceEEEEEeec
Confidence            6788887 5666  555655321                258999998 67777777677888887544

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.00  E-value=0.021  Score=34.46  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=29.1

Q ss_pred             cCCCCceEEEcCC-CCEEEEeCCCCEEEEEeCCcc
Q 024317          102 RFDKPKSFAVDMK-GNIYVADKSNHVIRKITNLGV  135 (269)
Q Consensus       102 ~~~~P~giavd~~-G~lyVaD~~n~~I~~~~~~g~  135 (269)
                      .+..|+++++|+. +.||.+|...++|.+.+-+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            4679999999985 559999999999999987763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.93  Score=39.88  Aligned_cols=127  Identities=10%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..+--.|+| .+|-++.+-.++..|..+|++.-..|-..++.=.           ......=+.|-+.++|...+.-+
T Consensus       139 ~~~~~pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------~~~~~ew~~l~FS~dGK~iLlsT  206 (311)
T KOG1446|consen  139 NLSGRPIAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------DNDEAEWTDLEFSPDGKSILLST  206 (311)
T ss_pred             ecCCCcceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------CCCccceeeeEEcCCCCEEEEEe
Confidence            34445556775 4888888888888999998764334444443200           01223346788989999555555


Q ss_pred             CCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          123 SNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       123 ~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      .++.+..+| .+|.  .++.+...             ..+.|-+-++.|+ +..+++-.++++|..++.+.+..+.
T Consensus       207 ~~s~~~~lDAf~G~~~~tfs~~~~-------------~~~~~~~a~ftPd-s~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  207 NASFIYLLDAFDGTVKSTFSGYPN-------------AGNLPLSATFTPD-SKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             CCCcEEEEEccCCcEeeeEeeccC-------------CCCcceeEEECCC-CcEEEEecCCCcEEEEEcCCCcEee
Confidence            677888887 4665  55554321             1345677888898 6666666778999999987654433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.82  E-value=0.23  Score=45.39  Aligned_cols=79  Identities=14%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC--CccEEEEEcCCcccCCCCCcccccCCCCceEEE--cC--CCCEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV--DM--KGNIY  118 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~--~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav--d~--~G~ly  118 (269)
                      ..|+|+++|+..+.|||++.. .-||+++.....  .+++...+. + .+         ...-..||++  ..  +|.|+
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~-g-~~---------l~aDvEGlaly~~~~g~gYLi  275 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD-G-DG---------LVADVEGLALYYGSDGKGYLI  275 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS-S-SS---------B-S-EEEEEEEE-CCC-EEEE
T ss_pred             CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc-c-cc---------cccCccceEEEecCCCCeEEE
Confidence            469999999989999999974 689999874322  222222211 1 01         1234577877  33  45699


Q ss_pred             EEeCCCCEEEEEeCCcc
Q 024317          119 VADKSNHVIRKITNLGV  135 (269)
Q Consensus       119 VaD~~n~~I~~~~~~g~  135 (269)
                      |++.+++...+|+..+.
T Consensus       276 vSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  276 VSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEecCCC
Confidence            99999999999997763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=1.1  Score=37.54  Aligned_cols=172  Identities=15%  Similarity=0.122  Sum_probs=92.9

Q ss_pred             CCCcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEE--------EEcCCccc---------CCCCCc------
Q 024317           44 EINPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKR--------LAGDGVQG---------YSDGEP------   98 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~--------~~g~g~~g---------~~dg~~------   98 (269)
                      -.+..|+..  .+|++|.+-.  +..+|+++|+.   +|++..        +.|.|...         +.+|..      
T Consensus        45 ~sfTQGL~~--~~g~i~esTG~yg~S~ir~~~L~---~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~  119 (262)
T COG3823          45 TSFTQGLEY--LDGHILESTGLYGFSKIRVSDLT---TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD  119 (262)
T ss_pred             hhhhcceee--eCCEEEEeccccccceeEEEecc---CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH
Confidence            346788888  4679998865  77889999873   344332        22333211         112211      


Q ss_pred             ---ccccCCCC---ceEEEcCCCCEEEEeCCCCEEEEEeCCc-----ceEEecCCCCCCCCCCCccccccccCceEEEEe
Q 024317           99 ---GSARFDKP---KSFAVDMKGNIYVADKSNHVIRKITNLG-----VTTIAGGGSKKEGRADGPAQNASFSNDFELTFV  167 (269)
Q Consensus        99 ---~~~~~~~P---~giavd~~G~lyVaD~~n~~I~~~~~~g-----~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~  167 (269)
                         ....|+.+   .|++-| +.+|+.+|. +..++..||..     +..+...+.+             ...-+-+-..
T Consensus       120 t~~~lg~~~y~GeGWgLt~d-~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~p-------------v~~LNELE~V  184 (262)
T COG3823         120 TLEELGRFSYEGEGWGLTSD-DKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVP-------------VSKLNELEWV  184 (262)
T ss_pred             HhhhhcccccCCcceeeecC-CcceEeeCC-ceEEEecCHHHhhhcceEEEEECCee-------------cccccceeee
Confidence               11334444   344443 233777774 55677666642     1111211111             1222334333


Q ss_pred             CCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317          168 PHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL  242 (269)
Q Consensus       168 ~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~  242 (269)
                       + |.||.-=....+|.+++++.+.++..-.-..-.....  ........++|||.++++ ++|++   |.+|...
T Consensus       185 -d-G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~--~~~~~~nvlNGIA~~~~~~r~~iT---GK~wp~l  253 (262)
T COG3823         185 -D-GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN--LDKSNDNVLNGIAHDPQQDRFLIT---GKLWPLL  253 (262)
T ss_pred             -c-cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC--ccccccccccceeecCcCCeEEEe---cCcCcee
Confidence             2 7888777778899999999887766543210111000  111123568999999999 88887   4455443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=95.59  E-value=1.1  Score=37.08  Aligned_cols=111  Identities=18%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n  124 (269)
                      .-..+++++ +++++++-..++.|..+++.  .........+.               ..+ ..+.+.++++.+++-..+
T Consensus        11 ~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~--~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~~   72 (289)
T cd00200          11 GVTCVAFSP-DGKLLATGSGDGTIKVWDLE--TGELLRTLKGH---------------TGPVRDVAASADGTYLASGSSD   72 (289)
T ss_pred             CEEEEEEcC-CCCEEEEeecCcEEEEEEee--CCCcEEEEecC---------------CcceeEEEECCCCCEEEEEcCC
Confidence            346778865 44555554457788888752  22222222111               122 478888888655555557


Q ss_pred             CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      +.|+.++....   ..+...                -..+..+.++++ +.++++...++.|..++....
T Consensus        73 ~~i~i~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~  125 (289)
T cd00200          73 KTIRLWDLETGECVRTLTGH----------------TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETG  125 (289)
T ss_pred             CeEEEEEcCcccceEEEecc----------------CCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCc
Confidence            88888886542   333221                124577888887 677777766788999988743

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.09  E-value=0.16  Score=30.45  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             cCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc
Q 024317           54 PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (269)
Q Consensus        54 ~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd  112 (269)
                      |+++.+||++...+.|..+|.   .++++...+..|              ..|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg--------------~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVG--------------GYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECC--------------CCCceEEeC
Confidence            357889999999999999985   355544433222              267777763

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.06  E-value=1.7  Score=36.22  Aligned_cols=111  Identities=12%  Similarity=0.030  Sum_probs=64.7

Q ss_pred             EEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 024317           51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI  130 (269)
Q Consensus        51 av~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~  130 (269)
                      ++. .++.+|+++ ..+.|+.+|.   .+|++....-...           .+..+  ..+ .++.+||+... +++..+
T Consensus        32 ~~~-~~~~v~~~~-~~~~l~~~d~---~tG~~~W~~~~~~-----------~~~~~--~~~-~~~~v~v~~~~-~~l~~~   91 (238)
T PF13360_consen   32 AVP-DGGRVYVAS-GDGNLYALDA---KTGKVLWRFDLPG-----------PISGA--PVV-DGGRVYVGTSD-GSLYAL   91 (238)
T ss_dssp             EEE-ETTEEEEEE-TTSEEEEEET---TTSEEEEEEECSS-----------CGGSG--EEE-ETTEEEEEETT-SEEEEE
T ss_pred             EEE-eCCEEEEEc-CCCEEEEEEC---CCCCEEEEeeccc-----------cccce--eee-cccccccccce-eeeEec
Confidence            552 589999995 6788999973   5787665432110           11111  233 57789998854 499999


Q ss_pred             e-CCcceEEec-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          131 T-NLGVTTIAG-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       131 ~-~~g~~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      | .+|...+.. .....         ...+..+...++.  ++.+|+... ++.|+.+++..+..
T Consensus        92 d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~  144 (238)
T PF13360_consen   92 DAKTGKVLWSIYLTSSP---------PAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKL  144 (238)
T ss_dssp             ETTTSCEEEEEEE-SSC---------TCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEE
T ss_pred             ccCCcceeeeecccccc---------ccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcE
Confidence            9 778733321 11100         0113344455555  367888776 57789998665544

...

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.89  E-value=1.3  Score=39.28  Aligned_cols=133  Identities=15%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEc----CCCCEEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVD----MKGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd----~~G~lyVa  120 (269)
                      +..+|..+ .+|++.|+-...+.|+++|   ..+|++....|.. ...+..   ....|..-++..+-    .++.|-|-
T Consensus       145 HiNsV~~~-~~G~yLiS~R~~~~i~~I~---~~tG~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~IslF  217 (299)
T PF14269_consen  145 HINSVDKD-DDGDYLISSRNTSTIYKID---PSTGKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISLF  217 (299)
T ss_pred             Eeeeeeec-CCccEEEEecccCEEEEEE---CCCCcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEEE
Confidence            45667774 5789999999999999997   4789988877653 222221   22334444444444    45555555


Q ss_pred             eC----------CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCc--eEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317          121 DK----------SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSND--FELTFVPHICALLISDHGNQLIRQIN  187 (269)
Q Consensus       121 D~----------~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P--~gia~~~~~g~LyVaD~~n~~I~~~~  187 (269)
                      |-          ...++..+|+..+ .++.-....   ..      ..+..+  -..-.-|. |+++|.....+++..++
T Consensus       218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~---~~------~~~~s~~~G~~Q~L~n-Gn~li~~g~~g~~~E~~  287 (299)
T PF14269_consen  218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYSD---HP------DGFYSPSQGSAQRLPN-GNVLIGWGNNGRISEFT  287 (299)
T ss_pred             cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeec---CC------CcccccCCCcceECCC-CCEEEecCCCceEEEEC
Confidence            54          3457778887654 332221100   00      011111  12223343 89999999999999999


Q ss_pred             CCCCeEEE
Q 024317          188 LKPEDCSK  195 (269)
Q Consensus       188 ~~~~~~~~  195 (269)
                      .+|+.+..
T Consensus       288 ~~G~vv~~  295 (299)
T PF14269_consen  288 PDGEVVWE  295 (299)
T ss_pred             CCCCEEEE
Confidence            99987654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.76  E-value=0.73  Score=43.36  Aligned_cols=108  Identities=13%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEeC-Cc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317          104 DKPKSFAVDMKGNIYVADKSNHVIRKITN-LG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      ..-.++++.++|.+.++=....+|+.++. +. .  .++.|.                -...++++++++ ++++++-..
T Consensus       204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----------------~~~v~~~~f~p~-g~~i~Sgs~  266 (456)
T KOG0266|consen  204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----------------STYVTSVAFSPD-GNLLVSGSD  266 (456)
T ss_pred             cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----------------CCceEEEEecCC-CCEEEEecC
Confidence            34578999999998888888888888886 43 3  555554                234589999998 688888888


Q ss_pred             CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc
Q 024317          180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL  242 (269)
Q Consensus       180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~  242 (269)
                      .+.|+.++............              .-....++++..+|+++++- +++.++-.+
T Consensus       267 D~tvriWd~~~~~~~~~l~~--------------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKG--------------HSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             CCcEEEEeccCCeEEEeeec--------------cCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            89999999887544432222              11345678888888666665 455555444

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.46  E-value=0.42  Score=42.49  Aligned_cols=59  Identities=12%  Similarity=0.095  Sum_probs=44.4

Q ss_pred             cccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       100 ~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      ...|..|++--. .+|.|||+|.+.+++.++|++ |+ ..++..+                ..|.||++.  +..++|.-
T Consensus       199 ~~GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------------G~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       199 ASGLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------------GFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             EcCccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------------CCCccccee--CCEEEEEe
Confidence            345889998888 689999999999999999997 88 6665432                357788876  23555543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=94.42  E-value=1.9  Score=40.09  Aligned_cols=133  Identities=11%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCC--------CCccEE--EEEcCCcc-----------cCCC--C-----C
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS--------EESVVK--RLAGDGVQ-----------GYSD--G-----E   97 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~--------~~g~~~--~~~g~g~~-----------g~~d--g-----~   97 (269)
                      -|..+-+.|++.++|++-..+.+|..+|....        .-|.+.  ++...|..           -+..  +     .
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i  380 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI  380 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence            58888887766699999999999999985310        001100  11111110           0000  0     0


Q ss_pred             cccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCc-----c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCC
Q 024317           98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-----V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC  171 (269)
Q Consensus        98 ~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g-----~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g  171 (269)
                      ....+...|+ +++.|++..+.|....|+|..|...-     . +.+-|....              .++-.+.++|+ |
T Consensus       381 ~~~~~hsmP~-~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va--------------Gys~~v~fSpD-G  444 (503)
T KOG0282|consen  381 ADPEMHTMPC-LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA--------------GYSCQVDFSPD-G  444 (503)
T ss_pred             cchhhccCcc-eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc--------------CceeeEEEcCC-C
Confidence            1223445555 89999999999999999999887322     1 444443222              24567889998 5


Q ss_pred             EEEEEECCCCeEEEEECCCCeEE
Q 024317          172 ALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       172 ~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      ..+++-.+.+++..++.....+.
T Consensus       445 ~~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             CeEEeecCCccEEEeechhhhhh
Confidence            66666666788999987765443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.27  E-value=0.26  Score=29.41  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             CCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          168 PHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       168 ~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      |+++.|||++...+.|..++......
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~   26 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV   26 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence            34578999999999999999865544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=93.84  E-value=4.2  Score=35.53  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=78.3

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -.++++. .+++..++-+-...++.+|+.   .|+ ...+.|..              .--.+++++++..-.|+-+..+
T Consensus        66 v~dv~~s-~dg~~alS~swD~~lrlWDl~---~g~~t~~f~GH~--------------~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   66 VSDVVLS-SDGNFALSASWDGTLRLWDLA---TGESTRRFVGHT--------------KDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ecceEEc-cCCceEEeccccceEEEEEec---CCcEEEEEEecC--------------CceEEEEecCCCceeecCCCcc
Confidence            4567775 578888888777888888863   333 33444432              2346799999999999999999


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCe
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPED  192 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~  192 (269)
                      .|..++--|.  .++.....              =...+++.++|.+.+.++...+. ..|..+++++-.
T Consensus       128 Tiklwnt~g~ck~t~~~~~~--------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSH--------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             eeeeeeecccEEEEEecCCC--------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            9999998776  55444321              14568899999754666665554 457777776643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.78  E-value=5.7  Score=36.95  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=41.0

Q ss_pred             eEEEcCCCC-E-EEEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317          108 SFAVDMKGN-I-YVADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--  180 (269)
Q Consensus       108 giavd~~G~-l-yVaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--  180 (269)
                      ..+++++|. | |.+|. +...|++++.++.  ..+....             ...   ...+++|++..|+++....  
T Consensus       294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-------------~~~---~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-------------GRY---STPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-------------Ccc---cCeEECCCCCEEEEEEcCCCc
Confidence            467778887 4 44442 3457888887664  3333210             001   2345678867777665432  


Q ss_pred             CeEEEEECCCCeEEE
Q 024317          181 QLIRQINLKPEDCSK  195 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~  195 (269)
                      .+|..++.+++....
T Consensus       358 ~~i~~~d~~~~~~~~  372 (435)
T PRK05137        358 FSIGVMKPDGSGERI  372 (435)
T ss_pred             eEEEEEECCCCceEe
Confidence            478888877654433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=93.62  E-value=4.7  Score=35.46  Aligned_cols=117  Identities=9%  Similarity=0.045  Sum_probs=79.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..-.++.+.|.+++.||+-.-...-+.+|..  ...-+.+|.|.-              .--+.|.+-|+|.-|++-..+
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R--~~~c~qtF~ghe--------------sDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR--SGQCVQTFEGHE--------------SDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeecc--CcceeEeecccc--------------cccceEEEccCCCeeeecCCC
Confidence            3556788877789999998777777777752  233355554431              134568888999999998888


Q ss_pred             CEEEEEeC--Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          125 HVIRKITN--LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       125 ~~I~~~~~--~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      ...+.||-  +-+ ..+...              ......+.++++-. |+|+++-..+..+.+++.-...
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~--------------~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHD--------------SIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ceeEEEeecCCcEEeeeccC--------------cccCCceeEEEccc-ccEEEeeecCCceeEeeccccc
Confidence            88888883  333 333221              11234478999876 8998888878888888865443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=93.61  E-value=5.7  Score=36.35  Aligned_cols=73  Identities=12%  Similarity=0.066  Sum_probs=42.5

Q ss_pred             eEEEcCCCC-EE-EEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317          108 SFAVDMKGN-IY-VADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--  180 (269)
Q Consensus       108 giavd~~G~-ly-VaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--  180 (269)
                      ..++.++|. |+ +++. +...|++++.++.  ..+...+                ......++++++..|+++...+  
T Consensus       282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------------~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------------GYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----------------CCccCeEECCCCCEEEEEEccCCc
Confidence            346667776 43 4443 3447888886554  3333211                1234567788866777776643  


Q ss_pred             CeEEEEECCCCeEEEe
Q 024317          181 QLIRQINLKPEDCSKS  196 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~  196 (269)
                      .+|+.++.+++.....
T Consensus       346 ~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       346 FNIAVMDLDGGGERVL  361 (417)
T ss_pred             eEEEEEeCCCCCeEEc
Confidence            3788888877554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=93.38  E-value=3.9  Score=33.74  Aligned_cols=95  Identities=13%  Similarity=0.038  Sum_probs=61.7

Q ss_pred             CceEEEcCCCC-EEEEe-CCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--C
Q 024317          106 PKSFAVDMKGN-IYVAD-KSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--N  180 (269)
Q Consensus       106 P~giavd~~G~-lyVaD-~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n  180 (269)
                      -.+++..|+|+ +.|+- ....+|..++.++. ..-.+.                 ...+.|..+|++..|.++..+  +
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~-----------------~~~n~i~wsP~G~~l~~~g~~n~~  124 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT-----------------QPRNTISWSPDGRFLVLAGFGNLN  124 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC-----------------CCceEEEECCCCCEEEEEEccCCC
Confidence            36788889888 44443 33558899998765 222221                 123679999996677777654  4


Q ss_pred             CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      +.|..++.+..........                .....++.+++|+.+++-
T Consensus       125 G~l~~wd~~~~~~i~~~~~----------------~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen  125 GDLEFWDVRKKKKISTFEH----------------SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             cEEEEEECCCCEEeecccc----------------CcEEEEEEcCCCCEEEEE
Confidence            5788898875544332221                235678999999877776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.34  E-value=6.4  Score=36.07  Aligned_cols=132  Identities=16%  Similarity=0.204  Sum_probs=72.2

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-c
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-G  134 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g  134 (269)
                      ++.+|+++. .+.++.+|.   .+|+......               +..+..+++ .++.||+++. ++++..++.. |
T Consensus       256 ~~~vy~~~~-~g~l~ald~---~tG~~~W~~~---------------~~~~~~~~~-~~~~vy~~~~-~g~l~ald~~tG  314 (394)
T PRK11138        256 GGVVYALAY-NGNLVALDL---RSGQIVWKRE---------------YGSVNDFAV-DGGRIYLVDQ-NDRVYALDTRGG  314 (394)
T ss_pred             CCEEEEEEc-CCeEEEEEC---CCCCEEEeec---------------CCCccCcEE-ECCEEEEEcC-CCeEEEEECCCC
Confidence            688898875 467888874   4666544321               112333455 4678999885 6789999864 4


Q ss_pred             ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE-EecccCccCCCcccceeee
Q 024317          135 VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS-KSSQSGSALGAVSVWVLVS  213 (269)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~  213 (269)
                      +..+.-.....          ..+..|   ++.  ++.||+.+. ++.|+.++...+.+. .....    +. .      
T Consensus       315 ~~~W~~~~~~~----------~~~~sp---~v~--~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~----~~-~------  367 (394)
T PRK11138        315 VELWSQSDLLH----------RLLTAP---VLY--NGYLVVGDS-EGYLHWINREDGRFVAQQKVD----SS-G------  367 (394)
T ss_pred             cEEEcccccCC----------CcccCC---EEE--CCEEEEEeC-CCEEEEEECCCCCEEEEEEcC----CC-c------
Confidence            34332111000          112333   222  378999886 467888887554332 22111    00 0      


Q ss_pred             eccceeeEEEecCCcEEEEcCCCCcc
Q 024317          214 VLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       214 ~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                      ..+.|.   +. +++|||.+.+|.+.
T Consensus       368 ~~s~P~---~~-~~~l~v~t~~G~l~  389 (394)
T PRK11138        368 FLSEPV---VA-DDKLLIQARDGTVY  389 (394)
T ss_pred             ceeCCE---EE-CCEEEEEeCCceEE
Confidence            112222   22 57899998887654

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=93.12  E-value=0.079  Score=31.73  Aligned_cols=20  Identities=45%  Similarity=0.647  Sum_probs=17.2

Q ss_pred             CCCceEEEcCCCCEEEEeCC
Q 024317          104 DKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus       104 ~~P~giavd~~G~lyVaD~~  123 (269)
                      ..|.+|++|++|++||+=.-
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            37899999999999998653

SBBP stands for Seven Bladed Beta Propeller.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.09  E-value=7.8  Score=36.38  Aligned_cols=73  Identities=11%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             ceEEEcCCCC-EEE-EeC-CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          107 KSFAVDMKGN-IYV-ADK-SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       107 ~giavd~~G~-lyV-aD~-~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ...+++++|. |++ ++. ++..|++++.+ |. ..+...+                ......+++|++..||++...++
T Consensus       309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----------------~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----------------EQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----------------CCCcCeeECCCCCEEEEEEecCC
Confidence            4467778887 444 443 34578888865 33 4432111                01123467888778877765433


Q ss_pred             --eEEEEECCCCeEEE
Q 024317          182 --LIRQINLKPEDCSK  195 (269)
Q Consensus       182 --~I~~~~~~~~~~~~  195 (269)
                        +|++++.+++....
T Consensus       373 ~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        373 KFNIARQDLETGAMQV  388 (448)
T ss_pred             ceEEEEEECCCCCeEE
Confidence              67888887765443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.04  E-value=3.8  Score=40.21  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317          103 FDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       103 ~~~P~giavd~~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      ++--..+.++|+.++..+-...+.||.+| ..|.  ..+.|..                .....|+++|+ |.-+++-..
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------------~~V~al~~Sp~-Gr~LaSg~e  597 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------------GPVTALAFSPC-GRYLASGDE  597 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----------------CceEEEEEcCC-CceEeeccc
Confidence            44455699999999888777788899888 4555  5554431                23468999997 655555556


Q ss_pred             CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317          180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL  242 (269)
Q Consensus       180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~  242 (269)
                      .+.|..|+...+.....-..+  .            .....|.+..+|++.++.   ++.++|...
T Consensus       598 d~~I~iWDl~~~~~v~~l~~H--t------------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGH--T------------GTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcc--c------------CceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            788999998775443322221  1            224567788899999988   455666443

>PTZ00421 coronin; Provisional

Probab=92.98  E-value=8.7  Score=36.65  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-------EEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-------VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIY  118 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-------~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~ly  118 (269)
                      -.+++++|.+++++++-+..+.|..||+.  ..+.       +..+.|              .-.....+++++++ +++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~--~~~~~~~~~~~l~~L~g--------------H~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIP--EEGLTQNISDPIVHLQG--------------HTKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecC--CCccccccCcceEEecC--------------CCCcEEEEEeCcCCCCEE
Confidence            36788876567777777778888888763  2211       112211              11234568888865 577


Q ss_pred             EEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          119 VADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       119 VaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      ++=...+.|+.+|.. +.  ..+.+.                -....+|+++++ +.++++-..++.|+.++.+.....
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h----------------~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCH----------------SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIV  203 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCC----------------CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEE
Confidence            766667889999854 33  222221                123468999987 777777777889999998765443

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=92.80  E-value=0.11  Score=31.01  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=17.3

Q ss_pred             cceeeEEEecCCcEEEEcCC
Q 024317          216 SCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       216 ~~p~gia~d~~g~lyVad~~  235 (269)
                      ..+.+|++|++|++||+=.+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            46899999999999999744

SBBP stands for Seven Bladed Beta Propeller.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.78  E-value=5.5  Score=39.30  Aligned_cols=120  Identities=18%  Similarity=0.082  Sum_probs=80.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      +-+.|++.|.+++.|++-+-.++|+.|++   ++-++....        |-      =..-+.+++.|+|...|.=+.++
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI---~d~~Vv~W~--------Dl------~~lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSI---SDKKVVDWN--------DL------RDLITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeec---CcCeeEeeh--------hh------hhhheeEEeccCCceEEEEEecc
Confidence            45889999999999999998899988864   344444332        10      02446799999999888888899


Q ss_pred             EEEEEeCCcce-----EEecCCCCCCCCCCCccccccccCceEEEEeCCCC-EEEEEECCCCeEEEEECCCCeE
Q 024317          126 VIRKITNLGVT-----TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC-ALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       126 ~I~~~~~~g~~-----~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g-~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ..+.++..|..     .+.-....          ..+-...+|+-+.|..- .|+|+-. ..|||.|+.+...+
T Consensus       474 ~C~fY~t~~lk~~~~~~I~~~~~K----------k~~~~rITG~Q~~p~~~~~vLVTSn-DSrIRI~d~~~~~l  536 (712)
T KOG0283|consen  474 YCRFYDTEGLKLVSDFHIRLHNKK----------KKQGKRITGLQFFPGDPDEVLVTSN-DSRIRIYDGRDKDL  536 (712)
T ss_pred             EEEEEEccCCeEEEeeeEeeccCc----------cccCceeeeeEecCCCCCeEEEecC-CCceEEEeccchhh
Confidence            99999877751     12111111          11122467887776422 4888776 46899999866543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=92.76  E-value=4.3  Score=38.38  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      .|.++|+.+++.....--...+|+++.-.|-  ...+-..             ..-..++.|+++|+...|-++|. ++.
T Consensus       445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-------------~h~a~iT~vaySpd~~yla~~Da-~rk  510 (603)
T KOG0318|consen  445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-------------EHRAAITDVAYSPDGAYLAAGDA-SRK  510 (603)
T ss_pred             ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-------------cccCCceEEEECCCCcEEEEecc-CCc
Confidence            6788999999987666666667777775552  1111100             01234789999999777777776 577


Q ss_pred             EEEEECCCCeE
Q 024317          183 IRQINLKPEDC  193 (269)
Q Consensus       183 I~~~~~~~~~~  193 (269)
                      +..++......
T Consensus       511 vv~yd~~s~~~  521 (603)
T KOG0318|consen  511 VVLYDVASREV  521 (603)
T ss_pred             EEEEEcccCce
Confidence            88888776655

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=92.75  E-value=4.6  Score=37.13  Aligned_cols=140  Identities=14%  Similarity=0.036  Sum_probs=91.5

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .-++|++. .+|.+..+-....-=+.+|+   .+|+ +..+.|              ....-.+|+++|+|....+-...
T Consensus       305 ~v~~iaf~-~DGSL~~tGGlD~~~RvWDl---Rtgr~im~L~g--------------H~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  305 GVFSIAFQ-PDGSLAATGGLDSLGRVWDL---RTGRCIMFLAG--------------HIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             ccceeEec-CCCceeeccCccchhheeec---ccCcEEEEecc--------------cccceeeEeECCCceEEeecCCC
Confidence            45778886 47888777654443445554   3555 333433              23455789999999988888888


Q ss_pred             CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +.+++.|-.++   .++.+.                -+-.+.+.++|+.|..+++-...+.+..++..+-.....-..  
T Consensus       367 nt~kVWDLR~r~~ly~ipAH----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--  428 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPAH----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--  428 (459)
T ss_pred             CcEEEeeecccccceecccc----------------cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--
Confidence            88888887665   444332                344678999997789999999999999998766433221111  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                                  .=....++.+.++|...++.
T Consensus       429 ------------He~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  429 ------------HEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             ------------CccceEEEEeccCCceEEEe
Confidence                        01234456667777655554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.73  E-value=8.4  Score=35.84  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=37.9

Q ss_pred             eEEEcCCCC-EEEE-eC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE-EECC-C
Q 024317          108 SFAVDMKGN-IYVA-DK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI-SDHG-N  180 (269)
Q Consensus       108 giavd~~G~-lyVa-D~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV-aD~~-n  180 (269)
                      ..+++++|. |+++ +. ++..|++++.++.  ..+....                ......++++++..|++ +|.. .
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~----------------~~~~~~~~spDG~~l~f~sd~~g~  315 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF----------------GIDTEPTWAPDGKSIYFTSDRGGR  315 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC----------------CCccceEECCCCCEEEEEECCCCC
Confidence            467778887 5443 32 3457888886543  3332210                11124567777555654 4432 3


Q ss_pred             CeEEEEECCCCeE
Q 024317          181 QLIRQINLKPEDC  193 (269)
Q Consensus       181 ~~I~~~~~~~~~~  193 (269)
                      ..|+.++.+++..
T Consensus       316 ~~iy~~dl~~g~~  328 (433)
T PRK04922        316 PQIYRVAASGGSA  328 (433)
T ss_pred             ceEEEEECCCCCe
Confidence            3578777765443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.31  E-value=5.8  Score=32.97  Aligned_cols=68  Identities=12%  Similarity=0.041  Sum_probs=41.6

Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeC-CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE-
Q 024317          110 AVDMKGNIYVADKSNHVIRKITN-LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN-  187 (269)
Q Consensus       110 avd~~G~lyVaD~~n~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~-  187 (269)
                      ++..++.+|+++ ..+.+..+|. +|+..+--...            ..+..+  ..+.  ++.+||.... ++|+.++ 
T Consensus        32 ~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~------------~~~~~~--~~~~--~~~v~v~~~~-~~l~~~d~   93 (238)
T PF13360_consen   32 AVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLP------------GPISGA--PVVD--GGRVYVGTSD-GSLYALDA   93 (238)
T ss_dssp             EEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECS------------SCGGSG--EEEE--TTEEEEEETT-SEEEEEET
T ss_pred             EEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeecc------------ccccce--eeec--ccccccccce-eeeEeccc
Confidence            554688899996 5789999996 77622221110            012222  2333  2789988854 4899999 


Q ss_pred             CCCCeEEE
Q 024317          188 LKPEDCSK  195 (269)
Q Consensus       188 ~~~~~~~~  195 (269)
                      .+|+..-.
T Consensus        94 ~tG~~~W~  101 (238)
T PF13360_consen   94 KTGKVLWS  101 (238)
T ss_dssp             TTSCEEEE
T ss_pred             CCcceeee
Confidence            55555544

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=92.21  E-value=9.8  Score=35.38  Aligned_cols=67  Identities=12%  Similarity=0.244  Sum_probs=38.6

Q ss_pred             ceEEEcCCCC-EEE-EeC-CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          107 KSFAVDMKGN-IYV-ADK-SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       107 ~giavd~~G~-lyV-aD~-~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ...+++++|. |++ +|. ++-+|+.++.++. ....+..             .     ...+++|++..|+++..  ..
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-------------~-----~~~~~SpDG~~ia~~~~--~~  354 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-------------G-----YSAQISADGKTLVMING--DN  354 (429)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-------------C-----CCccCCCCCCEEEEEcC--CC
Confidence            4577888887 444 442 4557777776655 3332210             0     12456777666766654  45


Q ss_pred             EEEEECCCCeE
Q 024317          183 IRQINLKPEDC  193 (269)
Q Consensus       183 I~~~~~~~~~~  193 (269)
                      +.+++..++..
T Consensus       355 i~~~Dl~~g~~  365 (429)
T PRK01742        355 VVKQDLTSGST  365 (429)
T ss_pred             EEEEECCCCCe
Confidence            77788766543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=92.00  E-value=11  Score=35.42  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=57.9

Q ss_pred             eEEEecCCCeEEEE-eC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-eC-C
Q 024317           49 SVIDRPGSSDLIVL-DS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-DK-S  123 (269)
Q Consensus        49 giav~~~~g~lyV~-D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D~-~  123 (269)
                      ..+++|++..|+++ +. +..+|+.+|+   ..|+...+....      +        .-...+++++|+ |+++ +. +
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl---~tg~~~~lt~~~------g--------~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDI---YTQVREKVTSFP------G--------INGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEEC---CCCCeEEecCCC------C--------CcCCeeECCCCCEEEEEEeCCC
Confidence            45677665666544 32 3457888875   234443332110      0        112457788887 6554 32 3


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC  193 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~  193 (269)
                      +..|++++.++.  ..+....                ......+++|++..|+++ +. ++..|++++.+++..
T Consensus       285 ~~~Iy~~dl~tg~~~~lt~~~----------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        285 QPEIYVVDIATKALTRITRHR----------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             CeEEEEEECCCCCeEECccCC----------------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            446888886554  3332210                112334567775566544 32 334678788765543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=91.92  E-value=12  Score=35.62  Aligned_cols=109  Identities=9%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ..|.++++.++|.+.|.-...+-+..-+..+...+- .                -..|.++|++|+ +...+.-...+.|
T Consensus       406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~-~----------------~y~~s~vAv~~~-~~~vaVGG~Dgkv  467 (603)
T KOG0318|consen  406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP-I----------------GYESSAVAVSPD-GSEVAVGGQDGKV  467 (603)
T ss_pred             CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec-c----------------ccccceEEEcCC-CCEEEEecccceE
Confidence            479999999988644443333333333333322221 1                246789999998 5555444556779


Q ss_pred             EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCccccc
Q 024317          184 RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRLDPPL  242 (269)
Q Consensus       184 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~~~~~  242 (269)
                      +.+++.|..+...+..-  .          ....+.-|+..++|..+.+ |..+.+..++
T Consensus       468 hvysl~g~~l~ee~~~~--~----------h~a~iT~vaySpd~~yla~~Da~rkvv~yd  515 (603)
T KOG0318|consen  468 HVYSLSGDELKEEAKLL--E----------HRAAITDVAYSPDGAYLAAGDASRKVVLYD  515 (603)
T ss_pred             EEEEecCCcccceeeee--c----------ccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence            99999887654332210  0          1234677888888854444 4444444444

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=91.91  E-value=7.9  Score=33.64  Aligned_cols=176  Identities=13%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             CcEEEEEecCc----cCCCCcceEEEe--cCCCeEEE--EeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCccccc
Q 024317           31 GYTVTTVIDGH----QLEINPHSVIDR--PGSSDLIV--LDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSAR  102 (269)
Q Consensus        31 g~~~~~~~~g~----~~~~~P~giav~--~~~g~lyV--~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~  102 (269)
                      -+.++.+.++.    ...+.|+|++..  +..|..||  ++.. +.|..+.+.-..+|++....             ..+
T Consensus       135 ~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~-------------vR~  200 (364)
T COG4247         135 PQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKL-------------VRQ  200 (364)
T ss_pred             ccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEccee-------------eEe
Confidence            33444444442    245678888864  22344444  4332 55655554323344433321             123


Q ss_pred             CCCC---ceEEEcC-CCCEEEEeCCCCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCC-CCEE
Q 024317          103 FDKP---KSFAVDM-KGNIYVADKSNHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-ICAL  173 (269)
Q Consensus       103 ~~~P---~giavd~-~G~lyVaD~~n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-~g~L  173 (269)
                      |..|   .|+..|. .|.||++.- +-.|++++.+   |. ..+..+-...      ......+.. -.|-+-|. .|.|
T Consensus       201 fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~~G~~g~~idr~~d~------~~LtdDvEG-ltiYy~pnGkGYL  272 (364)
T COG4247         201 FKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAEPNRGNTGRLIDRIKDL------SYLTDDVEG-LTIYYGPNGKGYL  272 (364)
T ss_pred             eecCCcccceeeccccceEEEeec-cceeeecccCCCCCCccchhhhhcCc------hhhcccccc-cEEEEcCCCcEEE
Confidence            4444   5777764 788999985 5689999843   21 1111111000      000000000 12222332 2567


Q ss_pred             EEEECCCCeEEEEECCCC--eEEEecccC--ccCC-----CcccceeeeeccceeeEEEecCCc
Q 024317          174 LISDHGNQLIRQINLKPE--DCSKSSQSG--SALG-----AVSVWVLVSVLSCLVSLVIGFVAR  228 (269)
Q Consensus       174 yVaD~~n~~I~~~~~~~~--~~~~~~~~g--~~~g-----~~~~~~~~~~l~~p~gia~d~~g~  228 (269)
                      ..+..+|+.--.+..+|.  .+..|+...  ...|     +......++....|.|+.+..+|+
T Consensus       273 ~aSSQGnNtya~y~ReG~N~YVgsF~vt~n~~iDg~setDG~DV~~~~LGa~~p~G~FVaQDG~  336 (364)
T COG4247         273 LASSQGNNTYAAYTREGNNDYVGSFGVTNNGAIDGVSETDGADVVNVPLGANFPFGLFVAQDGD  336 (364)
T ss_pred             EEecCCCceEEEEEeeCCCceEEEEeeccCCccccccccCCcceeccccCCCCcceeEEeccCC
Confidence            777777887777777764  333333210  0111     111112334457799999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=91.23  E-value=11  Score=34.13  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      +.+.+-..|+++| .+..|++.+....|..+|+   .+|+++....             .....-.++++.+.--..|+-
T Consensus       149 gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDl---atg~Lkltlt-------------Ghi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  149 GHLGWVRSVAVDP-GNEWFATGSADRTIKIWDL---ATGQLKLTLT-------------GHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hccceEEEEeeCC-CceeEEecCCCceeEEEEc---ccCeEEEeec-------------chhheeeeeeecccCceEEEe
Confidence            3566788999965 5777777777788888886   4677655431             123355789996655566666


Q ss_pred             CCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          122 KSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       122 ~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .....|..+|-.-.   ..+-|.                |....+|++-|. -.++++-.....+++++.+....
T Consensus       212 gedk~VKCwDLe~nkvIR~YhGH----------------lS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHYHGH----------------LSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             cCCCeeEEEechhhhhHHHhccc----------------cceeEEEecccc-ceeEEecCCcceEEEeeecccce
Confidence            66778888885433   444443                667788999887 57788877777888888776543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=91.14  E-value=4.3  Score=38.40  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=84.0

Q ss_pred             CCcEEEEEecCcc----------CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcc
Q 024317           30 DGYTVTTVIDGHQ----------LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPG   99 (269)
Q Consensus        30 ~g~~~~~~~~g~~----------~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~   99 (269)
                      +|+.+-.+..|..          ....-+..++.|.+.+.|++-+..+.+..|+.. ....+..++...+..+       
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~-~~k~q~qVik~k~~~g-------  315 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN-NTKSQLQVIKTKPAGG-------  315 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC-CchhheeEEeeccCCC-------
Confidence            6777666655432          222233445667777888887766666666542 2333344443222111       


Q ss_pred             cccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc----eEEecCCCCCCCCCCCccccccc--cCceEEEEeCCCCEE
Q 024317          100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV----TTIAGGGSKKEGRADGPAQNASF--SNDFELTFVPHICAL  173 (269)
Q Consensus       100 ~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l--~~P~gia~~~~~g~L  173 (269)
                        .=-.|..-+++++|.++-+-..++.|+.++..+.    ......              +..  ...++|+++++ |+.
T Consensus       316 --~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~--------------AH~~g~~Itsi~FS~d-g~~  378 (641)
T KOG0772|consen  316 --KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD--------------AHLPGQDITSISFSYD-GNY  378 (641)
T ss_pred             --cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee--------------ccCCCCceeEEEeccc-cch
Confidence              1124566788889999887788889998885332    111111              112  14578999998 888


Q ss_pred             EEEECCCCeEEEEECCCC
Q 024317          174 LISDHGNQLIRQINLKPE  191 (269)
Q Consensus       174 yVaD~~n~~I~~~~~~~~  191 (269)
                      +.+-...+.+..|+++.-
T Consensus       379 LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             hhhccCCCceeeeecccc
Confidence            888888888999988764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=90.94  E-value=13  Score=34.47  Aligned_cols=111  Identities=18%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             eEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-CC
Q 024317           49 SVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-KS  123 (269)
Q Consensus        49 giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~~  123 (269)
                      ..+++|++..|+++..  ++..|+.+|+   ..|+...+....              ..-...++.++|. |+++ + .+
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl---~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~~~g  262 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDL---ATGRRRVVANFK--------------GSNSAPAWSPDGRTLAVALSRDG  262 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEEC---CCCCEEEeecCC--------------CCccceEECCCCCEEEEEEccCC
Confidence            4567665556655432  3456888875   345444432110              0113467878886 5443 3 34


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE-EEEC-CCCeEEEEECCCCe
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL-ISDH-GNQLIRQINLKPED  192 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly-VaD~-~n~~I~~~~~~~~~  192 (269)
                      +.+|+.++.++.  ..+....                ......+++|++..|+ ++|. ++..|+.++.+++.
T Consensus       263 ~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        263 NSQIYTVNADGSGLRRLTQSS----------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CceEEEEECCCCCcEECCCCC----------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            567888886554  3332110                0112345677755565 4443 34467777766544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.66  E-value=13  Score=33.69  Aligned_cols=116  Identities=14%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             CCeEEEEeC----CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC------
Q 024317           56 SSDLIVLDS----SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN------  124 (269)
Q Consensus        56 ~g~lyV~D~----~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n------  124 (269)
                      ..++||.|.    ...|++.+|   ..++++.-.+..|             + .|+ ++++++|. +|++++.-      
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD---~d~~k~lGmi~~g-------------~-~~~-~~~spdgk~~y~a~T~~sR~~rG   63 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVID---ADSGKLLGMIDTG-------------F-LGN-VALSPDGKTIYVAETFYSRGTRG   63 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEE---TTTTEEEEEEEEE-------------S-SEE-EEE-TTSSEEEEEEEEEEETTEE
T ss_pred             CcEEEEECCccccccceEEEEE---CCCCcEEEEeecc-------------c-CCc-eeECCCCCEEEEEEEEEeccccc
Confidence            457888886    346888887   4566665544222             2 222 77888887 99998742      


Q ss_pred             ---CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEE
Q 024317          125 ---HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSK  195 (269)
Q Consensus       125 ---~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~  195 (269)
                         ..|..+|.........-.     .+.... ...+..++-++++.++..+||.+.. ...|-+++...+.+..
T Consensus        64 ~RtDvv~~~D~~TL~~~~EI~-----iP~k~R-~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   64 ERTDVVEIWDTQTLSPTGEIE-----IPPKPR-AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             EEEEEEEEEETTTTEEEEEEE-----ETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred             cceeEEEEEecCcCcccceEe-----cCCcch-heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence               235667765431111000     000000 1235678889999988899999874 4569999988876544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.65  E-value=14  Score=35.94  Aligned_cols=163  Identities=17%  Similarity=0.114  Sum_probs=97.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc-ccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~-~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      +-..||+-..+..+.++-.-.++|+.+|+.   .|....+....+ +...-+   ...-..-..+|....|.++|+-..+
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin---~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDIN---TGTATLVASFNNVTVNSLG---SGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEcc---CcchhhhhhccccccccCC---CCCccceeeeecCCcceEEEecCcc
Confidence            455677633567788888888999999863   221111110000 000000   0112233568888888899998888


Q ss_pred             CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +.++.+|+...   ..+-|.                -.....|.++++ |+-.++-...+.|+.+++...........  
T Consensus       193 k~lr~wDprt~~kimkLrGH----------------TdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~v--  253 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLRGH----------------TDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIV--  253 (735)
T ss_pred             cceEEeccccccceeeeecc----------------ccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEe--
Confidence            99999997654   333332                234567888887 66666777788999999988765443222  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                        .....|.....-+.-.=.+-|.+|+||.+|-.
T Consensus       254 --H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  254 --HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             --ccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence              12225654323233345667888899999843

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=90.44  E-value=1.8  Score=40.27  Aligned_cols=135  Identities=11%  Similarity=0.170  Sum_probs=88.0

Q ss_pred             EecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCCCEEEE
Q 024317           52 DRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSNHVIRK  129 (269)
Q Consensus        52 v~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n~~I~~  129 (269)
                      +-|..++|+.+-...++|+.++.  -.++. +.++.|.               +.| .++++..+|.=|.+-.....|..
T Consensus       222 ~fp~~~hLlLS~gmD~~vklW~v--y~~~~~lrtf~gH---------------~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  222 WFPKKGHLLLSGGMDGLVKLWNV--YDDRRCLRTFKGH---------------RKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hccceeeEEEecCCCceEEEEEE--ecCcceehhhhcc---------------hhhhhhhhccccCCeeeeeecceeeee
Confidence            33567888888888888988876  23444 4445433               122 45777778887777777777777


Q ss_pred             EeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcc
Q 024317          130 ITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVS  207 (269)
Q Consensus       130 ~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~  207 (269)
                      +|. .|+ ..-.-.                =..|.++-+.|++.+++++-..+.+|+.++.+.+.++.....        
T Consensus       285 wDtETG~~~~~f~~----------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--------  340 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL----------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR--------  340 (503)
T ss_pred             eccccceEEEEEec----------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh--------
Confidence            773 455 221111                135788999998669999999999999999887665443322        


Q ss_pred             cceeeeeccceeeEEEecCCcEEEEc
Q 024317          208 VWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       208 ~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                            .|.....|.+=++|+-+|+.
T Consensus       341 ------hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  341 ------HLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             ------hhhheeeeEEccCCceEeee
Confidence                  23344445555566666655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=90.39  E-value=15  Score=34.18  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             eEEEcCCCC-EEEE-e-CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEE-EEEECC-C
Q 024317          108 SFAVDMKGN-IYVA-D-KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICAL-LISDHG-N  180 (269)
Q Consensus       108 giavd~~G~-lyVa-D-~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~L-yVaD~~-n  180 (269)
                      ..+++++|. |+++ + .++..|+.++.++.  ..+....                ......+++|++..| |++|.. .
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~~g~  310 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQAGR  310 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC----------------CCcCceEECCCCCEEEEEeCCCCC
Confidence            468888887 6655 3 33457888886543  3332211                112345678875556 455543 3


Q ss_pred             CeEEEEECCCCeEEE
Q 024317          181 QLIRQINLKPEDCSK  195 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~  195 (269)
                      .+|++++.+++....
T Consensus       311 ~~Iy~~d~~~g~~~~  325 (429)
T PRK03629        311 PQVYKVNINGGAPQR  325 (429)
T ss_pred             ceEEEEECCCCCeEE
Confidence            478888877654433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.26  E-value=6  Score=36.44  Aligned_cols=98  Identities=15%  Similarity=0.024  Sum_probs=65.5

Q ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ..+...+.-++|.=+|+-.....|...+.||.  ..+-|..               -...++|++.+|+..++..+. ..
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------------~~~v~dlait~Dgk~vl~v~~-d~  376 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------------DPKVHDLAITYDGKYVLLVTV-DK  376 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------------cceeEEEEEcCCCcEEEEEec-cc
Confidence            35666777789998898887788888898887  4444422               233579999999778877775 46


Q ss_pred             eEEEEECCCCeEE-EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          182 LIRQINLKPEDCS-KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       182 ~I~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      +|+.++.+..... .....                +....+++..+|.+.+.+
T Consensus       377 ~i~l~~~e~~~dr~lise~----------------~~its~~iS~d~k~~Lvn  413 (519)
T KOG0293|consen  377 KIRLYNREARVDRGLISEE----------------QPITSFSISKDGKLALVN  413 (519)
T ss_pred             ceeeechhhhhhhcccccc----------------CceeEEEEcCCCcEEEEE
Confidence            7888877654332 11111                234566777777766665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.25  E-value=14  Score=33.88  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             EEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc-ccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEE
Q 024317           51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRK  129 (269)
Q Consensus        51 av~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~-~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~  129 (269)
                      ++  .++.+|+.+. ++.++.+|.   .+|++........ .++.... ....+  -.++++ .++.+||.+. ++.+..
T Consensus        66 vv--~~~~vy~~~~-~g~l~ald~---~tG~~~W~~~~~~~~~~~~~~-~~~~~--~~~~~v-~~~~v~v~~~-~g~l~a  134 (394)
T PRK11138         66 AV--AYNKVYAADR-AGLVKALDA---DTGKEIWSVDLSEKDGWFSKN-KSALL--SGGVTV-AGGKVYIGSE-KGQVYA  134 (394)
T ss_pred             EE--ECCEEEEECC-CCeEEEEEC---CCCcEeeEEcCCCcccccccc-ccccc--ccccEE-ECCEEEEEcC-CCEEEE
Confidence            55  4789999885 467888874   5777665432211 0000000 00000  123555 4678999875 568999


Q ss_pred             EeC-Ccc
Q 024317          130 ITN-LGV  135 (269)
Q Consensus       130 ~~~-~g~  135 (269)
                      +|. +|+
T Consensus       135 ld~~tG~  141 (394)
T PRK11138        135 LNAEDGE  141 (394)
T ss_pred             EECCCCC
Confidence            995 565

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.16  E-value=12  Score=36.75  Aligned_cols=114  Identities=13%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC-ceEEEcCCCCEEEEeCCCCE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P-~giavd~~G~lyVaD~~n~~  126 (269)
                      ++..+.| +.++.++-+....|+.|.+.  ..--+..+.|.               ..| .++.+.|.|..|++=.....
T Consensus       455 yg~sFsP-d~rfLlScSED~svRLWsl~--t~s~~V~y~GH---------------~~PVwdV~F~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  455 YGCSFSP-DRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGH---------------LAPVWDVQFAPRGYYFATASHDQT  516 (707)
T ss_pred             eeeeecc-cccceeeccCCcceeeeecc--cceeEEEecCC---------------CcceeeEEecCCceEEEecCCCce
Confidence            7788875 67777887776667666542  22223333322               234 34667667655554443333


Q ss_pred             EEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          127 IRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       127 I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      -+.+..+..   ..++|.                +.--.++.+.|. .+...+-...+.||.++...+..++.
T Consensus       517 ArLWs~d~~~PlRifagh----------------lsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRi  572 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGH----------------LSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRI  572 (707)
T ss_pred             eeeeecccCCchhhhccc----------------ccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEE
Confidence            333333332   445543                455567888885 44445555667788888766554443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=90.11  E-value=16  Score=33.99  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             ceEEEcCCCC-EE-EEeC-CCCEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-
Q 024317          107 KSFAVDMKGN-IY-VADK-SNHVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-  180 (269)
Q Consensus       107 ~giavd~~G~-ly-VaD~-~n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-  180 (269)
                      ...+++++|. |+ .+|. +...|+.++.++ . ..+...+                ......+++|++..|+++...+ 
T Consensus       295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g----------------~~~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG----------------NYNARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC----------------CCccCEEECCCCCEEEEEECCCC
Confidence            3467888887 44 4443 344688887543 3 3333211                1123467888877787765433 


Q ss_pred             -CeEEEEECCCCeEEEe
Q 024317          181 -QLIRQINLKPEDCSKS  196 (269)
Q Consensus       181 -~~I~~~~~~~~~~~~~  196 (269)
                       ..|+.++..++.....
T Consensus       359 ~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        359 QYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             ceeEEEEECCCCCeEEC
Confidence             3688888876654433

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=89.96  E-value=3.9  Score=34.79  Aligned_cols=162  Identities=16%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc----cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES----VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g----~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      +=.-|+..| ++.||+..  ++.+++.... +..+    .....++.+.         =..|   ..|++|+.|.||..+
T Consensus        35 ~~~~i~~~P-~g~lY~I~--~~~lY~~~~~-~~~~~~~~~~~~~Ig~g~---------W~~F---~~i~~d~~G~LYaV~   98 (229)
T PF14517_consen   35 NFRDIAAGP-NGRLYAIR--NDGLYRGSPS-SSGGNTWDSGSKQIGDGG---------WNSF---KFIFFDPTGVLYAVT   98 (229)
T ss_dssp             T-SEEEE-T-TS-EEEEE--TTEEEEES----STT--HHHH-EEEE-S----------GGG----SEEEE-TTS-EEEEE
T ss_pred             ccceEEEcC-CceEEEEE--CCceEEecCC-ccCcccccccCcccccCc---------ccce---eEEEecCCccEEEec
Confidence            444566655 78888888  3466665210 0111    1112222220         0123   379999999999888


Q ss_pred             CCCCEEEEEeCCcc--eEEec-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE-ECCCCeEEEec
Q 024317          122 KSNHVIRKITNLGV--TTIAG-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI-NLKPEDCSKSS  197 (269)
Q Consensus       122 ~~n~~I~~~~~~g~--~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~-~~~~~~~~~~~  197 (269)
                      . +..+.+..+...  ..+.+ .+... +       ....+...-|-.+++ |.||+.+.. +++++. .+.+..-.=..
T Consensus        99 ~-~G~lyR~~~~~~~~~~W~~~~~~~i-G-------~~GW~~f~~vfa~~~-GvLY~i~~d-g~~~~~~~p~~~~~~W~~  167 (229)
T PF14517_consen   99 P-DGKLYRHPRPTNGSDNWIGGSGKKI-G-------GTGWNDFDAVFAGPN-GVLYAITPD-GRLYRRYRPDGGSDRWLS  167 (229)
T ss_dssp             T-T-EEEEES---STT--HHH-HSEEE-E--------SSGGGEEEEEE-TT-S-EEEEETT-E-EEEE---SSTT--HHH
T ss_pred             c-ccceeeccCCCccCcchhhccceec-c-------cCCCccceEEEeCCC-ccEEEEcCC-CceEEeCCCCCCCCcccc
Confidence            6 567766653211  22221 00000 0       011444567777876 999999965 477776 33322110000


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                      ..  ..      ..+.....+.-|...++|+||.++.+|.+....
T Consensus       168 ~s--~~------v~~~gw~~~~~i~~~~~g~L~~V~~~G~lyr~~  204 (229)
T PF14517_consen  168 GS--GL------VGGGGWDSFHFIFFSPDGNLWAVKSNGKLYRGR  204 (229)
T ss_dssp             H---EE------EESSSGGGEEEEEE-TTS-EEEE-ETTEEEEES
T ss_pred             cc--ce------eccCCcccceEEeeCCCCcEEEEecCCEEeccC
Confidence            00  00      001122447889999999999999888886443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=89.91  E-value=17  Score=33.87  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=39.6

Q ss_pred             eEEEcCCCC-EE-EEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--
Q 024317          108 SFAVDMKGN-IY-VADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--  180 (269)
Q Consensus       108 giavd~~G~-ly-VaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--  180 (269)
                      ..+++++|. |+ ++|. ++..|++++.++.  ..+...+.              .+  ...+++|++..|+++...+  
T Consensus       288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--------------~~--~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--------------YN--TSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--------------Cc--CceEECCCCCEEEEEEccCCc
Confidence            456888887 44 4443 3456777775543  33332110              11  1346788766666554433  


Q ss_pred             CeEEEEECCCCeEEE
Q 024317          181 QLIRQINLKPEDCSK  195 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~  195 (269)
                      ..|..++..++....
T Consensus       352 ~~I~v~d~~~g~~~~  366 (427)
T PRK02889        352 FKLYVQDLATGQVTA  366 (427)
T ss_pred             EEEEEEECCCCCeEE
Confidence            368888876654433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=89.66  E-value=14  Score=32.65  Aligned_cols=107  Identities=15%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             ceEEEcC-CCCEEEEeCCCCEEEEEe-CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          107 KSFAVDM-KGNIYVADKSNHVIRKIT-NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       107 ~giavd~-~G~lyVaD~~n~~I~~~~-~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      .++.+.+ +++.||+-......+..| ..+.  .++.|..                .-.+.|.+.|+ |.-+++-..+..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe----------------sDINsv~ffP~-G~afatGSDD~t  252 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE----------------SDINSVRFFPS-GDAFATGSDDAT  252 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc----------------cccceEEEccC-CCeeeecCCCce
Confidence            3466666 899999887666666666 3444  5665542                23467888887 888888888888


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL  242 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~  242 (269)
                      .+.|+++..........-   .         ......++++...|+|..+-   ++-.+|.-.
T Consensus       253 cRlyDlRaD~~~a~ys~~---~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYSHD---S---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             eEEEeecCCcEEeeeccC---c---------ccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence            999998775443332220   0         22446789999999888884   444555544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.35  E-value=19  Score=35.68  Aligned_cols=116  Identities=7%  Similarity=-0.111  Sum_probs=72.8

Q ss_pred             CCCceEEEcC-CCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          104 DKPKSFAVDM-KGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       104 ~~P~giavd~-~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ++-+.|++.| |++.|++=.-.++||.++- +-+ ..+....                ...+.+++.|+ |.-.|.-+.+
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------------~lITAvcy~Pd-Gk~avIGt~~  472 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------------DLITAVCYSPD-GKGAVIGTFN  472 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------------hhheeEEeccC-CceEEEEEec
Confidence            3457899998 7778888888889998883 333 4443321                23578999998 7777777888


Q ss_pred             CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC--cEEEEcCCCCccccc
Q 024317          181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA--RPYIIRHTGRLDPPL  242 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g--~lyVad~~g~~~~~~  242 (269)
                      +.++.++..+.....-.....-.+..   .   .-.+..|+.+.+..  ++.|+..+.||+-.+
T Consensus       473 G~C~fY~t~~lk~~~~~~I~~~~~Kk---~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  473 GYCRFYDTEGLKLVSDFHIRLHNKKK---K---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             cEEEEEEccCCeEEEeeeEeeccCcc---c---cCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence            99999998886654433221011100   0   00234555554333  477777777777655

>PTZ00420 coronin; Provisional

Probab=89.24  E-value=23  Score=34.52  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=70.3

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ...+++++|.+++++++-+..+.|..||+.  ..+. ..... ....-      ....-..-..+++++++. ++++=..
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~--t~~~~~~~i~-~p~~~------L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIP--HNDESVKEIK-DPQCI------LKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCCccccccc-cceEE------eecCCCcEEEEEECCCCCeEEEEEeC
Confidence            357788876557788887778889988863  1221 11000 00000      001112346789988876 4445455


Q ss_pred             CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          124 NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       124 n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .+.|+.+|....   ..+..                 -.....++++++ |.++++-...+.|+.|++.....
T Consensus       147 DgtIrIWDl~tg~~~~~i~~-----------------~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQINM-----------------PKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             CCeEEEEECCCCcEEEEEec-----------------CCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcE
Confidence            778988885432   22211                 013467888887 66766665567888888776543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=89.15  E-value=14  Score=31.97  Aligned_cols=77  Identities=10%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCCeE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      .-..|.+..+|.-..+-...+.+++.|-...  .+-+   .          -+++.| +.|.+.|.++.|++.|. ++.|
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR---~----------~~~~spVn~vvlhpnQteLis~dq-sg~i  148 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQR---N----------YQHNSPVNTVVLHPNQTELISGDQ-SGNI  148 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCc--ccch---h----------ccCCCCcceEEecCCcceEEeecC-CCcE
Confidence            3355777778886666666667776663211  0000   0          012333 68999999899999998 4679


Q ss_pred             EEEECCCCeEEEec
Q 024317          184 RQINLKPEDCSKSS  197 (269)
Q Consensus       184 ~~~~~~~~~~~~~~  197 (269)
                      +++++.........
T Consensus       149 rvWDl~~~~c~~~l  162 (311)
T KOG0315|consen  149 RVWDLGENSCTHEL  162 (311)
T ss_pred             EEEEccCCcccccc
Confidence            99998887665543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=88.92  E-value=15  Score=31.87  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             Cc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .| ..|++.|.+++|+++|. ++.|+.+|+.  .+--.....             ......-..++++++|...++-...
T Consensus       125 spVn~vvlhpnQteLis~dq-sg~irvWDl~--~~~c~~~li-------------Pe~~~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  125 SPVNTVVLHPNQTELISGDQ-SGNIRVWDLG--ENSCTHELI-------------PEDDTSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             CCcceEEecCCcceEEeecC-CCcEEEEEcc--CCccccccC-------------CCCCcceeeEEEcCCCcEEEEecCC
Confidence            44 56888888899999996 5678888873  121111111             0111233567777777766665444


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      ++.++.+-- +.  +.+......          ++.=.+-.-.-++|+ +..+++-.....+++++.++-+.....-.  
T Consensus       189 G~cyvW~l~~~~~~s~l~P~~k~----------~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~~~kle~~l~--  255 (311)
T KOG0315|consen  189 GNCYVWRLLNHQTASELEPVHKF----------QAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDDFFKLELVLT--  255 (311)
T ss_pred             ccEEEEEccCCCccccceEhhhe----------ecccceEEEEEECCC-CcEEEeecCCceEEEEecCCceeeEEEee--
Confidence            444444421 11  222211100          111122334567898 67777777788899999888733222111  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEc---CCCCccccc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR---HTGRLDPPL  242 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad---~~g~~~~~~  242 (269)
                         ..+.|        --+-++..+|+..|+-   +..|+|...
T Consensus       256 ---gh~rW--------vWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  256 ---GHQRW--------VWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             ---cCCce--------EEeeeeccCccEEEecCCCCceeecccc
Confidence               11122        3456778888666654   445666555

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=88.89  E-value=13  Score=35.36  Aligned_cols=167  Identities=8%  Similarity=0.026  Sum_probs=90.2

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..++++ ..|--+++-+....|..||+. ..+-....+          .+.+.+.-..-+.+.....|+.+++=+++...
T Consensus       171 sal~~D-p~GaR~~sGs~Dy~v~~wDf~-gMdas~~~f----------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  171 SALAVD-PSGARFVSGSLDYTVKFWDFQ-GMDASMRSF----------RQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EEeeec-CCCceeeeccccceEEEEecc-cccccchhh----------hccCcccccccceeeecCCCCeEEEEecCcce
Confidence            446775 467777787777888888763 111111111          11111222233567777789988888889999


Q ss_pred             EEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEecccCccC
Q 024317          128 RKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE--DCSKSSQSGSAL  203 (269)
Q Consensus       128 ~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~--~~~~~~~~g~~~  203 (269)
                      ..+|.+|.  ..+. .+.. +. .+-..+.+....-++-+..|.+...|++-...+.+|.|+.+..  .+..+...  +.
T Consensus       239 kl~DRdG~~~~e~~-KGDQ-YI-~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--~~  313 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFS-KGDQ-YI-RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--PA  313 (641)
T ss_pred             eEEccCCceeeeee-ccch-hh-hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec--cC
Confidence            99999997  2222 1111 00 0000011112223444557777788888888887777776653  33333332  11


Q ss_pred             CCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                      +..        =..|...+++++|.++-+- .+|.|+
T Consensus       314 ~g~--------Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  314 GGK--------RVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             CCc--------ccCceeeecCCCcchhhhcccCCcee
Confidence            111        1335667778888663332 344443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=88.74  E-value=20  Score=33.33  Aligned_cols=114  Identities=13%  Similarity=0.149  Sum_probs=60.1

Q ss_pred             eEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E-EEEeC-C
Q 024317           49 SVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I-YVADK-S  123 (269)
Q Consensus        49 giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l-yVaD~-~  123 (269)
                      .++++|++..|+++..  ++..|+.+|+   ..+++..+...              -......++.++|+ | |++|. +
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~---~tg~~~~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g  309 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDL---ASGQIRQVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAG  309 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEccCC--------------CCCcCceEECCCCCEEEEEeCCCC
Confidence            3456665555655422  3345666664   23444333211              01224567888887 4 55654 3


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEEE
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCSK  195 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~~  195 (269)
                      ..+|++++.++.  ..+...+                ......+++|++..|+++...  ...|+.++.+++....
T Consensus       310 ~~~Iy~~d~~~g~~~~lt~~~----------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        310 RPQVYKVNINGGAPQRITWEG----------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             CceEEEEECCCCCeEEeecCC----------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            457888887653  4432211                112345678876667665443  2457788877665443

>smart00284 OLF Olfactomedin-like domains

Probab=88.57  E-value=14  Score=32.13  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=44.3

Q ss_pred             eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC--EEEEeCCCCE
Q 024317           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNHV  126 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~--lyVaD~~n~~  126 (269)
                      |-+|  .+|.+|..-...+.|.|+||.   ++++....--...++.+.-.-.-.-..=.++|+|.+|.  ||-+...++.
T Consensus        78 G~VV--YngslYY~~~~s~~iiKydL~---t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~  152 (255)
T smart00284       78 GVVV--YNGSLYFNKFNSHDICRFDLT---TETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK  152 (255)
T ss_pred             cEEE--ECceEEEEecCCccEEEEECC---CCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence            4455  479999988888999999983   33332211111111111000000001225788888886  6666544444


Q ss_pred             --EEEEeCCcc
Q 024317          127 --IRKITNLGV  135 (269)
Q Consensus       127 --I~~~~~~g~  135 (269)
                        |.++|++..
T Consensus       153 ivvSkLnp~tL  163 (255)
T smart00284      153 IVISKLNPATL  163 (255)
T ss_pred             EEEEeeCcccc
Confidence              358888654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.26  E-value=18  Score=32.19  Aligned_cols=117  Identities=16%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             EEEcCCCC-EEEEeC----CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          109 FAVDMKGN-IYVADK----SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       109 iavd~~G~-lyVaD~----~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      -+++++|+ ||.++.    +.++|-++|.... ..+....+.+             -.|+.|.+.+++..|.|+..+=..
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-------------IGPHel~l~pDG~tLvVANGGI~T  122 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-------------IGPHELLLMPDGETLVVANGGIET  122 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-------------cChhhEEEcCCCCEEEEEcCCCcc
Confidence            45557888 787753    4678999997743 4443322222             358999999985599999865111


Q ss_pred             E-----EEEECCCC--eEEEe-cccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          183 I-----RQINLKPE--DCSKS-SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       183 I-----~~~~~~~~--~~~~~-~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                      -     .+++++..  .+++. ...|.-..+..+. ......+..=++++.+|.++++. +.|...
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~  187 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLSIRHLAVDGDGTVAFAMQYQGDPG  187 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccceeeEEecCCCcEEEEEecCCCCC
Confidence            0     12232221  22222 2222111211111 11122346779999999999998 555543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=87.39  E-value=23  Score=32.35  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             eEEEcCCCC-EEEEeC--CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE-EECC-C
Q 024317          108 SFAVDMKGN-IYVADK--SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI-SDHG-N  180 (269)
Q Consensus       108 giavd~~G~-lyVaD~--~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV-aD~~-n  180 (269)
                      .+++.++|. |+++..  ++..|+.++.++.  ..+.....              .  ....++++++..|++ ++.. .
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--------------~--~~~~~~s~dg~~l~~~s~~~g~  301 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG--------------I--DTEPSWSPDGKSIAFTSDRGGS  301 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCC--------------C--CCCEEECCCCCEEEEEECCCCC
Confidence            467888887 666543  3456888886543  33322110              0  112345566445543 4432 3


Q ss_pred             CeEEEEECCCCeE
Q 024317          181 QLIRQINLKPEDC  193 (269)
Q Consensus       181 ~~I~~~~~~~~~~  193 (269)
                      ..|+.++.++...
T Consensus       302 ~~iy~~d~~~~~~  314 (417)
T TIGR02800       302 PQIYMMDADGGEV  314 (417)
T ss_pred             ceEEEEECCCCCE
Confidence            3677777766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]

Probab=87.19  E-value=18  Score=30.96  Aligned_cols=174  Identities=13%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CccCCCCcce---EEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           40 GHQLEINPHS---VIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        40 g~~~~~~P~g---iav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      |...|-.|..   |.- -.+.-+|+-...|-.|...    +++|++....--|....   .....+|     -..|.+|.
T Consensus        83 G~sefl~pl~akei~S-r~~~~l~~~S~rnvtvnar----n~~g~v~~~l~lgp~~v---e~~~~~F-----ev~~~dgk  149 (292)
T KOG3950|consen   83 GDSEFLQPLYAKEIHS-RPGSPLYLQSARNVTVNAR----NPNGKVTGQLILGPKKV---EAQCKRF-----EVNDVDGK  149 (292)
T ss_pred             chhhhhhhhhhhhhhc-CCCCceEEEeccCeeEEcc----CCCCceeeeEEechHHH---hhhhcee-----EEecCCCc
Confidence            4455666643   222 1245566666566555554    67888776443321100   0011111     33445777


Q ss_pred             -EEEEeCC-----CCEEEEEeCCcceEEecCCCCCCCCCCCcccc---------ccccCceEEEEeCCCCEEEEEECCCC
Q 024317          117 -IYVADKS-----NHVIRKITNLGVTTIAGGGSKKEGRADGPAQN---------ASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       117 -lyVaD~~-----n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~---------~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                       ||.+|..     .+++++....|. .+ ......+.....+..+         -.+..|.||-+....|++=++...  
T Consensus       150 ~LFsad~dEv~vgae~LRv~g~~Ga-vF-~~sveTp~VRa~P~~~LRLESPTRsl~m~Apk~v~i~a~AG~iea~~~~--  225 (292)
T KOG3950|consen  150 LLFSADEDEVVVGAEKLRVLGAEGA-VF-EHSVETPHVRADPFQELRLESPTRSLSMEAPKGVEIQAAAGNIEATCLT--  225 (292)
T ss_pred             EEEEeccceeEeeeeeeEeccCCcc-cc-cccccCCcccCCCCccccccCCcceeeeecCCCceeeeccCCceEEEee--
Confidence             7888853     233344444442 11 1111111111111111         234556666665555665544431  


Q ss_pred             eEEEEECCCCeEEEecccC---ccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          182 LIRQINLKPEDCSKSSQSG---SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       182 ~I~~~~~~~~~~~~~~~~g---~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      -|+.-+.+|....-...--   .+.+...  +.+ .-....-||+-++|+||.+-
T Consensus       226 di~~~s~dGeirLeas~I~lp~L~~g~~~--psg-S~q~v~eiCvC~nGkLfLs~  277 (292)
T KOG3950|consen  226 DLRLESKDGEIRLEASKIRLPKLPTGSYT--PSG-SRQKVFEICVCPNGKLFLSQ  277 (292)
T ss_pred             eeeEeccCceEEEeeceeecccccCCCCC--CCC-CcceEEEEEEecCCcEEEec
Confidence            1444445554433222110   1111111  111 11446789999999999954

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=86.97  E-value=25  Score=32.30  Aligned_cols=120  Identities=19%  Similarity=0.187  Sum_probs=75.5

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..+.++| .+...++-++...+..+|+.  ..-...+..|              .-+.-..|+..|+|..+.+-..++.|
T Consensus       119 l~~~fsp-~g~~l~tGsGD~TvR~WD~~--TeTp~~t~Kg--------------H~~WVlcvawsPDgk~iASG~~dg~I  181 (480)
T KOG0271|consen  119 LSVQFSP-TGSRLVTGSGDTTVRLWDLD--TETPLFTCKG--------------HKNWVLCVAWSPDGKKIASGSKDGSI  181 (480)
T ss_pred             EEEEecC-CCceEEecCCCceEEeeccC--CCCcceeecC--------------CccEEEEEEECCCcchhhccccCCeE
Confidence            5677776 78888888888888888763  2222233222              23466789999999999999999999


Q ss_pred             EEEeCC-cc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          128 RKITNL-GV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       128 ~~~~~~-g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      +.+||. |.   ..+.|......         +---.|-.+  +|. ..++.+-...+.|+.++...+...+.
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It---------~Lawep~hl--~p~-~r~las~skDg~vrIWd~~~~~~~~~  242 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWIT---------ALAWEPLHL--VPP-CRRLASSSKDGSVRIWDTKLGTCVRT  242 (480)
T ss_pred             EEecCCCCCcccccccCccccee---------EEeeccccc--CCC-ccceecccCCCCEEEEEccCceEEEE
Confidence            999964 32   44444422110         001123222  333 45666666677788888777655543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=86.74  E-value=27  Score=32.48  Aligned_cols=114  Identities=13%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             ceEEEecCCCeEEE-EeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-C
Q 024317           48 HSVIDRPGSSDLIV-LDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-K  122 (269)
Q Consensus        48 ~giav~~~~g~lyV-~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~  122 (269)
                      ...+++|++..|++ ++. +...|+.+|+   ..|+...+....      +        .-...++.++|. |+++ + .
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl---~~g~~~~l~~~~------g--------~~~~~~~SPDG~~la~~~~~~  267 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDL---ETGQRELVGNFP------G--------MTFAPRFSPDGRKVVMSLSQG  267 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEEC---CCCcEEEeecCC------C--------cccCcEECCCCCEEEEEEecC
Confidence            34566665555544 432 3467888875   345444432110      0        112456777776 4433 3 2


Q ss_pred             CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeEE
Q 024317          123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDCS  194 (269)
Q Consensus       123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~~  194 (269)
                      ++..|++++.++.  ..+....                ......+++|++..|+++ |. +...|++++.+++...
T Consensus       268 g~~~Iy~~d~~~~~~~~Lt~~~----------------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        268 GNTDIYTMDLRSGTTTRLTDSP----------------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             CCceEEEEECCCCceEEccCCC----------------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence            3456777776544  3332211                011234566765555443 32 2346777777665443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.70  E-value=24  Score=32.01  Aligned_cols=72  Identities=14%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             ceEEEcCCCCEEEEeCCCCEE-EEEe-CCcce-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          107 KSFAVDMKGNIYVADKSNHVI-RKIT-NLGVT-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I-~~~~-~~g~~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ..++++++|.+.-+-...++| |+|. ++|.. .-.-+|..             ...-..|+++++ ...+.+-..++.|
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------~~~IySL~Fs~d-s~~L~~sS~TeTV  242 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------PVSIYSLSFSPD-SQFLAASSNTETV  242 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------eeEEEEEEECCC-CCeEEEecCCCeE
Confidence            569999999988888777765 5555 67762 22222221             344578999998 6676677778889


Q ss_pred             EEEECCCCe
Q 024317          184 RQINLKPED  192 (269)
Q Consensus       184 ~~~~~~~~~  192 (269)
                      ..|.++...
T Consensus       243 HiFKL~~~~  251 (391)
T KOG2110|consen  243 HIFKLEKVS  251 (391)
T ss_pred             EEEEecccc
Confidence            999887643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=86.67  E-value=28  Score=35.24  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      +-+.|++++++..|+++++ ++-|.+++-. +..-...++--.              -..-.+++.  +.+.|++-+.++
T Consensus        15 G~t~i~~d~~gefi~tcgs-dg~ir~~~~~-sd~e~P~ti~~~--------------g~~v~~ia~--~s~~f~~~s~~~   76 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGS-DGDIRKWKTN-SDEEEPETIDIS--------------GELVSSIAC--YSNHFLTGSEQN   76 (933)
T ss_pred             ceEEEEEcCCCCEEEEecC-CCceEEeecC-CcccCCchhhcc--------------CceeEEEee--cccceEEeeccc
Confidence            4678899876666666664 4456665321 000111111000              001233444  455788888899


Q ss_pred             EEEEEe-CCcc-eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          126 VIRKIT-NLGV-TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       126 ~I~~~~-~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .|.++. +.+. .++..                +|..| ..++++.+ |...++-...-.|..++....
T Consensus        77 tv~~y~fps~~~~~iL~----------------Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTILA----------------RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             eEEEeeCCCCCccceee----------------eeeccceEEEEecC-CcEEEeecCceeEEEEecccc
Confidence            999887 4444 33332                24444 57888876 666666666666777776553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=86.47  E-value=22  Score=31.21  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=75.5

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCC--CCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS--EESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~--~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .-..+++.+.+-++|++-+....|..+++.-+  .-|.+.. +.|              .-.+-.++++.++|+.+++-.
T Consensus        17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------------HsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen   17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------------HSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------------cceEecceEEccCCceEEecc
Confidence            34667776666788888888888888877421  1122121 211              112446899999999999998


Q ss_pred             CCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          123 SNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       123 ~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ....++..|..+ +  ..+.|...                -..+++++++ +.-.|+-...+.|..++.-+.-.
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~----------------dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck  139 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTK----------------DVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCK  139 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCC----------------ceEEEEecCC-CceeecCCCcceeeeeeecccEE
Confidence            888999999554 4  55665432                2357888887 55566666566666666655443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.34  E-value=31  Score=33.92  Aligned_cols=68  Identities=15%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       104 ~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ..-+|+++-+++. |++-...+.|+..+.+|.  ....|..                +.-..|+.... +.+.|+-..++
T Consensus       180 D~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ght----------------n~vYsis~~~~-~~~Ivs~gEDr  241 (745)
T KOG0301|consen  180 DCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHT----------------NFVYSISMALS-DGLIVSTGEDR  241 (745)
T ss_pred             hheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccc----------------eEEEEEEecCC-CCeEEEecCCc
Confidence            3456788855433 455555678888888776  5555542                22345554443 67888888888


Q ss_pred             eEEEEECC
Q 024317          182 LIRQINLK  189 (269)
Q Consensus       182 ~I~~~~~~  189 (269)
                      .++.|+.+
T Consensus       242 tlriW~~~  249 (745)
T KOG0301|consen  242 TLRIWKKD  249 (745)
T ss_pred             eEEEeecC
Confidence            88888766

>PRK01742 tolB translocation protein TolB; Provisional

Probab=86.24  E-value=28  Score=32.29  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             ceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE-e-C
Q 024317           48 HSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA-D-K  122 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa-D-~  122 (269)
                      ..++++|++..|.++..  +...|+.+|+   ..|+...+....      +        .-..+++.++|+ |+++ + .
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl---~tg~~~~l~~~~------g--------~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDL---RSGARKVVASFR------G--------HNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeC---CCCceEEEecCC------C--------ccCceeECCCCCEEEEEEecC
Confidence            45677776666644432  3456888875   234433332110      0        112467888887 5554 3 2


Q ss_pred             CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317          123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC  193 (269)
Q Consensus       123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~  193 (269)
                      ++-.|+.++.++.  ..+....                ......+++|++..|+++ +. ++-+|+.++..+...
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGA----------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCC----------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            3345777776543  4433211                112345667764445443 32 234566666655433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=85.77  E-value=12  Score=33.44  Aligned_cols=115  Identities=10%  Similarity=0.154  Sum_probs=72.0

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc---cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES---VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g---~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..+.+-| ...|.++.+..+.|..+|+.  ...   ..+++        .+       ...-..|.++|.|+...+-+..
T Consensus       176 n~l~FHP-re~ILiS~srD~tvKlFDfs--K~saKrA~K~~--------qd-------~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  176 NDLDFHP-RETILISGSRDNTVKLFDFS--KTSAKRAFKVF--------QD-------TEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             cceeecc-hhheEEeccCCCeEEEEecc--cHHHHHHHHHh--------hc-------cceeeeEeecCCCceEEEecCC
Confidence            4566644 67888888888888888752  111   01111        01       1122579999999966666667


Q ss_pred             CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      ..++.+|-+.- -.+...+.           ++.-...+.+-+++. ++|||+-...+.|..|+--.+.
T Consensus       238 p~~rlYdv~T~QcfvsanPd-----------~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPD-----------DQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR  294 (430)
T ss_pred             CceeEEeccceeEeeecCcc-----------cccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH
Confidence            77888876554 22222211           111233467888886 9999999999999999855443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=85.75  E-value=14  Score=34.90  Aligned_cols=66  Identities=8%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             ceEEEcCCCC-EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCCC
Q 024317          107 KSFAVDMKGN-IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       107 ~giavd~~G~-lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n~  181 (269)
                      .||++.+... |+|+=....+|..||...+   .+++                  ...| +.+++.++ |..+++-..++
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------------y~~Plstvaf~~~-G~~L~aG~s~G  272 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------------------YSHPLSTVAFSEC-GTYLCAGNSKG  272 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeecccccccceee------------------ecCCcceeeecCC-ceEEEeecCCc
Confidence            6899998555 8887777889999986443   2222                  1233 46898886 99999999999


Q ss_pred             eEEEEECCCC
Q 024317          182 LIRQINLKPE  191 (269)
Q Consensus       182 ~I~~~~~~~~  191 (269)
                      +|..++.++.
T Consensus       273 ~~i~YD~R~~  282 (673)
T KOG4378|consen  273 ELIAYDMRST  282 (673)
T ss_pred             eEEEEecccC
Confidence            9999998875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=85.35  E-value=32  Score=32.06  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=50.3

Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ...++++||.||.+-..+..+..+|-...   ..|.|..                .-...|+++. +|+-.++....+.|
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght----------------~~vk~i~FsE-NGY~Lat~add~~V  413 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT----------------GPVKAISFSE-NGYWLATAADDGSV  413 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC----------------CceeEEEecc-CceEEEEEecCCeE
Confidence            56889999999999999999999985433   3332211                1135799876 58888888878889


Q ss_pred             EEEECCCCe
Q 024317          184 RQINLKPED  192 (269)
Q Consensus       184 ~~~~~~~~~  192 (269)
                      ..|+++...
T Consensus       414 ~lwDLRKl~  422 (506)
T KOG0289|consen  414 KLWDLRKLK  422 (506)
T ss_pred             EEEEehhhc
Confidence            999887643

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.16  E-value=12  Score=31.88  Aligned_cols=116  Identities=11%  Similarity=0.122  Sum_probs=56.6

Q ss_pred             eEEEecCCCeEEEEeCCCCEEEEEecCCCCC-----ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-----SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-----g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      .|+++ ..|.||..+. ...+++.....+..     +.-+.+.+.             .-+...-|..+++|.||..+..
T Consensus        85 ~i~~d-~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~-------------GW~~f~~vfa~~~GvLY~i~~d  149 (229)
T PF14517_consen   85 FIFFD-PTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT-------------GWNDFDAVFAGPNGVLYAITPD  149 (229)
T ss_dssp             EEEE--TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S-------------SGGGEEEEEE-TTS-EEEEETT
T ss_pred             EEEec-CCccEEEecc-ccceeeccCCCccCcchhhccceecccC-------------CCccceEEEeCCCccEEEEcCC
Confidence            78885 5899997775 46677775421111     011222111             2334567999999999999964


Q ss_pred             CCEEEEE-eCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          124 NHVIRKI-TNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       124 n~~I~~~-~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                       +++.+. .+++. ..+......        ........+.-|...++ ++||..+. ++.|+|..+..
T Consensus       150 -g~~~~~~~p~~~~~~W~~~s~~--------v~~~gw~~~~~i~~~~~-g~L~~V~~-~G~lyr~~~p~  207 (229)
T PF14517_consen  150 -GRLYRRYRPDGGSDRWLSGSGL--------VGGGGWDSFHFIFFSPD-GNLWAVKS-NGKLYRGRPPQ  207 (229)
T ss_dssp             -E-EEEE---SSTT--HHHH-EE--------EESSSGGGEEEEEE-TT-S-EEEE-E-TTEEEEES---
T ss_pred             -CceEEeCCCCCCCCccccccce--------eccCCcccceEEeeCCC-CcEEEEec-CCEEeccCCcc
Confidence             466666 44442 222111000        00011455788998887 89998855 68898776443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=85.11  E-value=46  Score=33.66  Aligned_cols=67  Identities=3%  Similarity=-0.067  Sum_probs=39.8

Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeCCc-------c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITNLG-------V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~~g-------~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      ..+.+. ++..+++=...+.|+.++...       .  ..+.+.                -...+.++++++ +.++++-
T Consensus       665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh----------------~~~i~~v~~s~~-~~~lasg  726 (793)
T PLN00181        665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH----------------TNVKNFVGLSVS-DGYIATG  726 (793)
T ss_pred             EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC----------------CCCeeEEEEcCC-CCEEEEE
Confidence            345553 556555555567788777431       1  122111                123467888887 5666666


Q ss_pred             CCCCeEEEEECCCC
Q 024317          178 HGNQLIRQINLKPE  191 (269)
Q Consensus       178 ~~n~~I~~~~~~~~  191 (269)
                      ..++.|..++....
T Consensus       727 s~D~~v~iw~~~~~  740 (793)
T PLN00181        727 SETNEVFVYHKAFP  740 (793)
T ss_pred             eCCCEEEEEECCCC
Confidence            67788999987644

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=84.11  E-value=27  Score=30.28  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             CCeEEEEeCCCCEEEEEecC------------------CCCCccEEEEEcCCcccCCCC-Cc-ccccCCCCceE---EEc
Q 024317           56 SSDLIVLDSSRSAFYTLSFP------------------LSEESVVKRLAGDGVQGYSDG-EP-GSARFDKPKSF---AVD  112 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~------------------~~~~g~~~~~~g~g~~g~~dg-~~-~~~~~~~P~gi---avd  112 (269)
                      +++-+++......|+.+|..                  ++++|.+.+++-.+.-.|-|. .. .-..+..|+-|   .+.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~  233 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLH  233 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccccc
Confidence            45555555666666666632                  256777766654322111111 11 12335566554   455


Q ss_pred             CCCCEEEEeCCCCEEEEEeCC-cceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          113 MKGNIYVADKSNHVIRKITNL-GVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       113 ~~G~lyVaD~~n~~I~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      |+-++|||-.....+++||-+ |...-.- ..            +.+.-..++-++|+ |.+|-+-...+.|+.+...
T Consensus       234 P~k~~fVaGged~~~~kfDy~TgeEi~~~-nk------------gh~gpVhcVrFSPd-GE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NK------------GHFGPVHCVRFSPD-GELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CCCceEEecCcceEEEEEeccCCceeeec-cc------------CCCCceEEEEECCC-CceeeccCCCceEEEEEec
Confidence            677899998888889999853 3311110 01            12334578999998 9999999988888877643

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=83.94  E-value=28  Score=30.32  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=40.4

Q ss_pred             ccccCceEEEEeCC--CC--EEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEE-ecCCcEE
Q 024317          156 ASFSNDFELTFVPH--IC--ALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVI-GFVARPY  230 (269)
Q Consensus       156 ~~l~~P~gia~~~~--~g--~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~-d~~g~ly  230 (269)
                      ..+..|.|+++-.+  -|  .++|++.. +-|..+.+-.......+..    --..+ .   .-..-.|+.+ |..|.||
T Consensus       150 s~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k----~vR~f-k---~~tQTEG~VaDdEtG~LY  220 (364)
T COG4247         150 SSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTK----LVRQF-K---IPTQTEGMVADDETGFLY  220 (364)
T ss_pred             cCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcce----eeEee-e---cCCcccceeeccccceEE
Confidence            34678899988543  23  45666664 6677766432211111000    00000 0   0012334444 4567999


Q ss_pred             EEcCCCCccccc
Q 024317          231 IIRHTGRLDPPL  242 (269)
Q Consensus       231 Vad~~g~~~~~~  242 (269)
                      |++.+..+|..-
T Consensus       221 IaeEdvaiWK~~  232 (364)
T COG4247         221 IAEEDVAIWKYE  232 (364)
T ss_pred             Eeeccceeeecc
Confidence            999888888654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.70  E-value=12  Score=34.09  Aligned_cols=78  Identities=6%  Similarity=-0.080  Sum_probs=54.9

Q ss_pred             CCceEEEcCC--CCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          105 KPKSFAVDMK--GNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       105 ~P~giavd~~--G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ++.++.+-+.  -.-|++-+..|.++.+|+... ..++-....             =+.-+.+++.|+++.||++|+. +
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------------E~~is~~~l~p~gn~Iy~gn~~-g  269 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------------ENPISSTGLTPSGNFIYTGNTK-G  269 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-------------cCcceeeeecCCCcEEEEeccc-c
Confidence            3467777544  458888888999999997654 444432110             1223678889998899999985 5


Q ss_pred             eEEEEECCCCeEEEe
Q 024317          182 LIRQINLKPEDCSKS  196 (269)
Q Consensus       182 ~I~~~~~~~~~~~~~  196 (269)
                      .+-.|+.+++.+...
T Consensus       270 ~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  270 QLAKFDLRGGKLLGC  284 (412)
T ss_pred             hhheecccCceeecc
Confidence            699999998876544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=83.35  E-value=24  Score=35.76  Aligned_cols=75  Identities=17%  Similarity=0.308  Sum_probs=50.8

Q ss_pred             ccCCCC-ceEEEcCCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEE
Q 024317          101 ARFDKP-KSFAVDMKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLI  175 (269)
Q Consensus       101 ~~~~~P-~giavd~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyV  175 (269)
                      ++|..| +.++++.+|+..++-...-.|..++.+- .  ..+-|.                 ..| .+|.++|+ ++++.
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----------------~apVl~l~~~p~-~~fLA  154 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----------------DAPVLQLSYDPK-GNFLA  154 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----------------CCceeeeeEcCC-CCEEE
Confidence            456666 6789988999888777666777777432 2  444332                 222 47889997 66666


Q ss_pred             EECCCCeEEEEECCCCeE
Q 024317          176 SDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       176 aD~~n~~I~~~~~~~~~~  193 (269)
                      +-..++.|+.|+.....+
T Consensus       155 vss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             EEecCceEEEEEcccchh
Confidence            666688899998876543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.12  E-value=31  Score=30.18  Aligned_cols=80  Identities=9%  Similarity=0.026  Sum_probs=41.4

Q ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC-ccccc-c
Q 024317          166 FVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR-LDPPL-Q  243 (269)
Q Consensus       166 ~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~-~~~~~-~  243 (269)
                      +++-.+.||++-++ ++|.+.+++......+...  ..++. . ........|.=+...-+|++---++.|+ +|++. .
T Consensus       143 i~~g~~sly~a~t~-G~vlavt~~~~~~~~~w~~--~~~~P-i-F~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~  217 (354)
T KOG4649|consen  143 IAPGDGSLYAAITA-GAVLAVTKNPYSSTEFWAA--TRFGP-I-FASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK  217 (354)
T ss_pred             ecCCCceEEEEecc-ceEEEEccCCCCcceehhh--hcCCc-c-ccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence            45534899999985 6888888776543333221  01100 0 0111222333344344687777776655 44666 4


Q ss_pred             ccccccc
Q 024317          244 HDMEALP  250 (269)
Q Consensus       244 ~~~~~~~  250 (269)
                      +.....|
T Consensus       218 GpIf~~P  224 (354)
T KOG4649|consen  218 GPIFMEP  224 (354)
T ss_pred             Cceeccc
Confidence            5554444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.03  E-value=6  Score=36.93  Aligned_cols=75  Identities=12%  Similarity=-0.020  Sum_probs=35.7

Q ss_pred             CceEEEEeCCCCEEEEEECCCCeEEEEECCCCe---EE-EecccCccCCCcccceee-eeccceeeEEEecCC-cEEEEc
Q 024317          160 NDFELTFVPHICALLISDHGNQLIRQINLKPED---CS-KSSQSGSALGAVSVWVLV-SVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~---~~-~~~~~g~~~g~~~~~~~~-~~l~~p~gia~d~~g-~lyVad  233 (269)
                      -|++|.++-+...|||+....+-|++++.....   ++ ...-.|...........+ ..-..|.=|.+..|| ++||+.
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            468999999889999999999999999987631   11 111111110000000111 122457888999999 999998


Q ss_pred             C
Q 024317          234 H  234 (269)
Q Consensus       234 ~  234 (269)
                      .
T Consensus       393 S  393 (461)
T PF05694_consen  393 S  393 (461)
T ss_dssp             -
T ss_pred             e
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=82.80  E-value=42  Score=31.48  Aligned_cols=115  Identities=21%  Similarity=0.201  Sum_probs=61.1

Q ss_pred             EEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          109 FAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       109 iavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                      ..|.+++++.+....++.|..+.......+.+....              ....+++++.++..||++. +.+.|+.|+.
T Consensus       309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--------------G~v~~~~fsSdsk~l~~~~-~~GeV~v~nl  373 (514)
T KOG2055|consen  309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--------------GVVSDFTFSSDSKELLASG-GTGEVYVWNL  373 (514)
T ss_pred             eEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--------------cEEeeEEEecCCcEEEEEc-CCceEEEEec
Confidence            567677776666666777777764332111111000              1236788888755555554 4568999998


Q ss_pred             CCCeEEEe-cccCccCCCcccceeeeeccceeeEEEecCCcEEEEc--CCCCcccccccccccccCCC
Q 024317          189 KPEDCSKS-SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR--HTGRLDPPLQHDMEALPNQS  253 (269)
Q Consensus       189 ~~~~~~~~-~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad--~~g~~~~~~~~~~~~~~~~~  253 (269)
                      +...+..- ...|..              +-..+|...+|. |+|.  ..|-+..+++-...+.-+|.
T Consensus       374 ~~~~~~~rf~D~G~v--------------~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  374 RQNSCLHRFVDDGSV--------------HGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             CCcceEEEEeecCcc--------------ceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCC
Confidence            88754443 223222              223466666666 4444  34555555533333333333

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=82.77  E-value=43  Score=33.75  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      .-.|+++| .-+.+.|+-...+-+..+|+.   ...+..-..-+              ..+.+|.....-.++++-....
T Consensus       495 ~V~gla~D-~~n~~~vsa~~~Gilkfw~f~---~k~l~~~l~l~--------------~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  495 EVTGLAVD-GTNRLLVSAGADGILKFWDFK---KKVLKKSLRLG--------------SSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             ceeEEEec-CCCceEEEccCcceEEEEecC---CcceeeeeccC--------------CCcceeeeeehhhhhhhhcCce
Confidence            34789994 678888888777777777642   22211111000              1223333333333333333334


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .|+.+|-...   ..+.|.+                +.-++++++|++..|.+++. .+.|+.|+.-...+
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~----------------nritd~~FS~DgrWlisasm-D~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHG----------------NRITDMTFSPDGRWLISASM-DSTIRTWDLPTGTL  610 (910)
T ss_pred             eEEEEEchhhhhhHHhhccc----------------cceeeeEeCCCCcEEEEeec-CCcEEEEeccCcce
Confidence            5555553322   3344432                45689999999666666665 46799999766543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.73  E-value=35  Score=30.44  Aligned_cols=171  Identities=13%  Similarity=0.045  Sum_probs=87.5

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEE-----EEEecCCCCCccEEEE-EcCCc--ccCCCCCcccccCCCCceEEEcCC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAF-----YTLSFPLSEESVVKRL-AGDGV--QGYSDGEPGSARFDKPKSFAVDMK  114 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I-----~~~dl~~~~~g~~~~~-~g~g~--~g~~dg~~~~~~~~~P~giavd~~  114 (269)
                      ..-.|+.|.+.|++..|.|++.+=..-     .|++++ +..-.+..+ ..+|.  ....  -+..-...+-.-++++.+
T Consensus        97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~-tM~psL~~ld~~sG~ll~q~~--Lp~~~~~lSiRHLa~~~~  173 (305)
T PF07433_consen   97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD-TMQPSLVYLDARSGALLEQVE--LPPDLHQLSIRHLAVDGD  173 (305)
T ss_pred             CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh-hcCCceEEEecCCCceeeeee--cCccccccceeeEEecCC
Confidence            344788888876444888886532211     233332 222222222 11111  0000  000112334566899889


Q ss_pred             CCEEEEeCCCCE-------EEEEeCCcceEEecCCCCCCCCCCCccccccc-cCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          115 GNIYVADKSNHV-------IRKITNLGVTTIAGGGSKKEGRADGPAQNASF-SNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       115 G~lyVaD~~n~~-------I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l-~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      |.++++-.....       +-.+..++.......+         ......| .+--.||++++++.+.++-...+++..|
T Consensus       174 G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p---------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  174 GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAP---------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCC---------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            998888754321       1111111111100000         0001123 4567899999866888999999999999


Q ss_pred             ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                      +...+......                .+.--.|++...++ ..+++..|.+....
T Consensus       245 d~~tg~~~~~~----------------~l~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  245 DAATGRLLGSV----------------PLPDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             ECCCCCEeecc----------------ccCceeeeeecCCc-eEEeCCCccEEEcc
Confidence            87665544321                12334567777666 55666666665444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=82.08  E-value=19  Score=33.27  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~  123 (269)
                      .--.+|+++| +|....+-+..+.+.++|+..  ...+.++.              +.-+--..|.+.+ .|...++-.+
T Consensus       346 k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~--r~~ly~ip--------------AH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  346 KEILSVAFSP-NGYHLATGSSDNTCKVWDLRM--RSELYTIP--------------AHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             cceeeEeECC-CceEEeecCCCCcEEEeeecc--cccceecc--------------cccchhhheEecccCCeEEEEccc
Confidence            3457788864 777777777777777777642  22233332              2334556788887 6777888888


Q ss_pred             CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          124 NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       124 n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      .+.+..+...+-   ..++|...                ..-++.++++ +...++-...+.+..+
T Consensus       409 D~t~kiWs~~~~~~~ksLaGHe~----------------kV~s~Dis~d-~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLAGHEG----------------KVISLDISPD-SQAIATSSFDRTIKLW  457 (459)
T ss_pred             CcceeeecCCCcccchhhcCCcc----------------ceEEEEeccC-CceEEEeccCceeeec
Confidence            889998886553   66676532                2346777776 6666666655555443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.46  E-value=50  Score=31.36  Aligned_cols=130  Identities=9%  Similarity=-0.013  Sum_probs=62.6

Q ss_pred             CceEEEcCCCCEEEEeC-------------CCCEEEEEeCCcc--eEEecCCCCCCCCC-----------CCcccccccc
Q 024317          106 PKSFAVDMKGNIYVADK-------------SNHVIRKITNLGV--TTIAGGGSKKEGRA-----------DGPAQNASFS  159 (269)
Q Consensus       106 P~giavd~~G~lyVaD~-------------~n~~I~~~~~~g~--~~~~g~~~~~~~~~-----------~~~~~~~~l~  159 (269)
                      =+++...++|++.+.-.             ....|..++++|+  ..+--.........           .+......-.
T Consensus       192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~  271 (477)
T PF05935_consen  192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL  271 (477)
T ss_dssp             -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred             ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence            36788889999444332             2457888888887  33322211100000           0011111224


Q ss_pred             CceEEEEeCCCCEEEEEECCCCeEEEEE-CCCCeEEEecccCccCCC--cc-cce-------------eeeeccceeeEE
Q 024317          160 NDFELTFVPHICALLISDHGNQLIRQIN-LKPEDCSKSSQSGSALGA--VS-VWV-------------LVSVLSCLVSLV  222 (269)
Q Consensus       160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~-~~~~~~~~~~~~g~~~g~--~~-~~~-------------~~~~l~~p~gia  222 (269)
                      +-++|.+++..+.|+|+-...+.|++|+ ..++..-..+..+.-...  .- +..             .--....++...
T Consensus       272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~  351 (477)
T PF05935_consen  272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAH  351 (477)
T ss_dssp             -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEE
T ss_pred             ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceE
Confidence            5689999996699999999888999999 445555555544211111  00 000             001234567777


Q ss_pred             EecCC---cEEEEcCC
Q 024317          223 IGFVA---RPYIIRHT  235 (269)
Q Consensus       223 ~d~~g---~lyVad~~  235 (269)
                      +-++|   +|.|-|+.
T Consensus       352 ~~~~g~~~~l~vFDNg  367 (477)
T PF05935_consen  352 LIPDGPQGNLLVFDNG  367 (477)
T ss_dssp             E-TTS---SEEEEE--
T ss_pred             EcCCCCeEEEEEEECC
Confidence            88888   99999965

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=81.46  E-value=34  Score=29.52  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC--EEEEeCCCC-
Q 024317           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNH-  125 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~--lyVaD~~n~-  125 (269)
                      |-++  .+|.+|.--.+.+.|.|+||.   ++.+....--...++.+..+....=..=.++|+|.+|.  ||-+...++ 
T Consensus        73 G~vV--YngslYY~~~~s~~IvkydL~---t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~  147 (250)
T PF02191_consen   73 GHVV--YNGSLYYNKYNSRNIVKYDLT---TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN  147 (250)
T ss_pred             CeEE--ECCcEEEEecCCceEEEEECc---CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence            4445  479999999899999999983   33333111111111111000000011125688887775  454454433 


Q ss_pred             -EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCc-eEEEEeCCCCEEEEEECCC---CeE-EEEECCCC
Q 024317          126 -VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSND-FELTFVPHICALLISDHGN---QLI-RQINLKPE  191 (269)
Q Consensus       126 -~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P-~gia~~~~~g~LyVaD~~n---~~I-~~~~~~~~  191 (269)
                       .|.++|++..   .++-..                +..+ .+=|+--. |.||+++..+   .+| ..||...+
T Consensus       148 ivvskld~~tL~v~~tw~T~----------------~~k~~~~naFmvC-GvLY~~~s~~~~~~~I~yafDt~t~  205 (250)
T PF02191_consen  148 IVVSKLDPETLSVEQTWNTS----------------YPKRSAGNAFMVC-GVLYATDSYDTRDTEIFYAFDTYTG  205 (250)
T ss_pred             EEEEeeCcccCceEEEEEec----------------cCchhhcceeeEe-eEEEEEEECCCCCcEEEEEEECCCC
Confidence             4568887653   344321                1111 12223223 8999999875   334 55665543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=81.37  E-value=41  Score=30.35  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-Cc
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN-LG  134 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g  134 (269)
                      ++.+|+++. .+.++.+|.   .+|+......               +..+...++ .++.+|+++. ++++..++. +|
T Consensus       241 ~~~vy~~~~-~g~l~a~d~---~tG~~~W~~~---------------~~~~~~p~~-~~~~vyv~~~-~G~l~~~d~~tG  299 (377)
T TIGR03300       241 GGQVYAVSY-QGRVAALDL---RSGRVLWKRD---------------ASSYQGPAV-DDNRLYVTDA-DGVVVALDRRSG  299 (377)
T ss_pred             CCEEEEEEc-CCEEEEEEC---CCCcEEEeec---------------cCCccCceE-eCCEEEEECC-CCeEEEEECCCC
Confidence            578888775 456888874   4666544321               112233444 3677999874 678999986 45


Q ss_pred             ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          135 VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      +..+.-.....          .....|   ++.  ++.||+.+. ++.|+.++...+.
T Consensus       300 ~~~W~~~~~~~----------~~~ssp---~i~--g~~l~~~~~-~G~l~~~d~~tG~  341 (377)
T TIGR03300       300 SELWKNDELKY----------RQLTAP---AVV--GGYLVVGDF-EGYLHWLSREDGS  341 (377)
T ss_pred             cEEEccccccC----------CccccC---EEE--CCEEEEEeC-CCEEEEEECCCCC
Confidence            43332111000          112333   222  368888875 4678888876443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PTZ00421 coronin; Provisional

Probab=81.25  E-value=52  Score=31.44  Aligned_cols=70  Identities=10%  Similarity=0.126  Sum_probs=46.4

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..|++.|..++++++-...+.|..||+   .+++.......             .-..-.++++.++|.++++-...+.|
T Consensus       129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl---~tg~~~~~l~~-------------h~~~V~sla~spdG~lLatgs~Dg~I  192 (493)
T PTZ00421        129 GIVSFHPSAMNVLASAGADMVVNVWDV---ERGKAVEVIKC-------------HSDQITSLEWNLDGSLLCTTSKDKKL  192 (493)
T ss_pred             EEEEeCcCCCCEEEEEeCCCEEEEEEC---CCCeEEEEEcC-------------CCCceEEEEEECCCCEEEEecCCCEE
Confidence            457776655567777666778888875   23433222110             11234678999999988888888999


Q ss_pred             EEEeCC
Q 024317          128 RKITNL  133 (269)
Q Consensus       128 ~~~~~~  133 (269)
                      +.+|..
T Consensus       193 rIwD~r  198 (493)
T PTZ00421        193 NIIDPR  198 (493)
T ss_pred             EEEECC
Confidence            999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=80.71  E-value=47  Score=30.63  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=57.0

Q ss_pred             ceEEEecCCCeE-EEEeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEE-Ee-C
Q 024317           48 HSVIDRPGSSDL-IVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV-AD-K  122 (269)
Q Consensus        48 ~giav~~~~g~l-yV~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV-aD-~  122 (269)
                      ...+++|++..| |+++. ++..|+++++   .+|+...+....      +        .....++.++|+ |++ .+ .
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l---~~g~~~~l~~~~------g--------~~~~~~~SpDG~~la~~~~~~  264 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNL---DTGRREQITNFE------G--------LNGAPAWSPDGSKLAFVLSKD  264 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEEC---CCCCEEEccCCC------C--------CcCCeEECCCCCEEEEEEccC
Confidence            445677666666 44433 3457888875   344444432110      0        112366777886 544 33 2


Q ss_pred             CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-EC-CCCeEEEEECCCCeE
Q 024317          123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DH-GNQLIRQINLKPEDC  193 (269)
Q Consensus       123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~-~n~~I~~~~~~~~~~  193 (269)
                      ++..|++++.++.  ..+....                .......++|++..|+++ +. +...|++++..++..
T Consensus       265 g~~~Iy~~d~~~~~~~~lt~~~----------------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        265 GNPEIYVMDLASRQLSRVTNHP----------------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             CCceEEEEECCCCCeEEcccCC----------------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3457888886654  3332211                011233556765556543 33 234677777665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	1e-08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-05
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	5e-24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	8e-15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	6e-08
3kya_A	496	Putative phosphatase; structural genomics, joint c	8e-24
3kya_A	496	Putative phosphatase; structural genomics, joint c	4e-14
3kya_A	496	Putative phosphatase; structural genomics, joint c	7e-10
3kya_A	496	Putative phosphatase; structural genomics, joint c	2e-08
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-09
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	9e-07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	6e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	8e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	7e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	6e-06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	9e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-04

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  103 bits (257), Expect = 2e-25
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 30  DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFY--TLSFPLSEESVVKRLAG 87
                T +          H     P  +   ++  ++         +     +    + G
Sbjct: 256 TTQETTPLFTIQDSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG 314

Query: 88  D-GVQGYSDGEPGSARFDKP---------KSFAVDMKGNIYVADKSNHVIRKITNLG-VT 136
             G + + DG    AR   P                + + Y  D+ NH IR +T  G VT
Sbjct: 315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVT 374

Query: 137 TIAGGGSK-KEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188
           T AG GS    G  DG   Q A F++   + +        I D  N+ IR+I  
Sbjct: 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 17/160 (10%)

Query: 12  ITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYT 71
           I+ + +      S ++   G ++  V+     + +    I      ++   +++    Y 
Sbjct: 45  ISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIANTEANEKFVYQ 104

Query: 72  LSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF------AVDMKGN--IYVADKS 123
                     V    G    G +  +     FD    F      + D K +  +Y+    
Sbjct: 105 KKML------VTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVG-E 157

Query: 124 NHVIRKI--TNLGVTTIAGGGSKKEGRADGPAQNASFSND 161
            H  R I      V+T+  G SK          ++    +
Sbjct: 158 QHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITN 197

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGG---SKKEGRADGP-A 153
           P  A     K   ++ +G      ++N        + VTT  G     + K    DGP  
Sbjct: 72  PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDLKDGPFD 131

Query: 154 QNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189
               F     L+F P     L         R I+ +
Sbjct: 132 DCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFE 167

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 98.9 bits (246), Expect = 5e-24
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 54  PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ-GYSDGEPGSARFDKPKSFAVD 112
              S+  + D + S+ Y ++     +   +   G   Q    DG    A F +P    VD
Sbjct: 276 FVDSNFYMSDQNLSSVYKITP----DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331

Query: 113 MKGNIYVADK-SNHVIRKIT--NLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH 169
             GN Y+ D    + +RK+   +  V+T+AG       + DG    A+F+  +++ +   
Sbjct: 332 EDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV-ASQIDGTPLEATFNYPYDICYDGE 390

Query: 170 ICALLISDHGNQLIRQINL 188
                I++   + IR+  +
Sbjct: 391 -GGYWIAEAWGKAIRKYAV 408

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 75.4 bits (185), Expect = 1e-15
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 81  VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIA 139
            V  +    + G             P      +  N Y++D++   + KIT  G      
Sbjct: 251 EVTLIKQLELSG------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFC 304

Query: 140 GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD-HGNQLIRQINLK 189
           G  ++K    DG  + A F+    +T         I D      +R++++ 
Sbjct: 305 GSATQK-TVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDIL 353

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 72.7 bits (178), Expect = 8e-15
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 7/187 (3%)

Query: 29  EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD 88
           E    ++TVI      +   +    PG + + V+   +      +F   +   V  ++G 
Sbjct: 55  EAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGS 114

Query: 89  -GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGSKKE 146
               G  DG+  SA+F      A      +    + +  +R I+      T    G K  
Sbjct: 115 ASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG 174

Query: 147 GRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAV 206
             A    +   +S  +E T       + +    +        +            AL   
Sbjct: 175 KPAVTKDKQRVYSIGWEGTH-----TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET 229

Query: 207 SVWVLVS 213
             W+   
Sbjct: 230 EEWLYFV 236

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 86  AGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLG-VTTIAGGGS 143
              G      G+ GS    K  + A+D     +Y  D + +  R       VT I     
Sbjct: 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE- 259

Query: 144 KKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188
                        +    + + +        +SD     + +I  
Sbjct: 260 -------LSGSLGTNPGPYLIYYFVDSN-FYMSDQNLSSVYKITP 296

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 99.2 bits (246), Expect = 8e-24
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 86  AGDGVQGYSDGEPGSARFDKP--------KSFAVDMKGNIYVADKSNHVIRKITNLG-VT 136
            G    GY D     AR + P          +  + + + Y  D+ N  +RK+T  G V+
Sbjct: 354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVS 413

Query: 137 TIAGGGSK-------KEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL 188
           T AG G+        + G  DG   + A F +   L +        + D     IR I++
Sbjct: 414 TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473

Query: 189 KPEDC 193
           + E+ 
Sbjct: 474 EQEEN 478

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 70.7 bits (172), Expect = 4e-14
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 18/97 (18%)

Query: 76  LSEESVVKRLAGDGVQ---------GYSDGEPG-SARFDKPKSFAVDMKGN-IYVADKSN 124
           ++ E +V   AG G           G  DG+    ARF        D      YV D+  
Sbjct: 406 VTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465

Query: 125 HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSND 161
           H IR I+      +AG         + P   ++  ++
Sbjct: 466 HTIRTISMEQEENVAGDE-------NIPEDESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 58.0 bits (139), Expect = 7e-10
 Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 14/116 (12%)

Query: 86  AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI-YVADKSNHVIRKITNLGVTTIAG---- 140
                          A         +   G   Y    +NH   +     +         
Sbjct: 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN 351

Query: 141 --GGSKKEGRADGPAQNASFSNDFELTFVPHICA-------LLISDHGNQLIRQIN 187
             GG K+ G  D     A  +N  +  FV +              D  N  +R++ 
Sbjct: 352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 11/169 (6%)

Query: 30  DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS---RSAFYTLSFPLSEESVVKRLA 86
               +++ ++ + +  N    I      +    ++     +  Y      S    + +  
Sbjct: 170 KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229

Query: 87  GDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKSNHVIRKITNLGV-TTIAGGGSK 144
            DG           A + +     +    G +Y        + ++  +    TI  GGS 
Sbjct: 230 ADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289

Query: 145 KEGRADGPAQN------ASFSNDFELTFVPHICALLISDHGNQLIRQIN 187
                + P         A  S +F++   P           N    + +
Sbjct: 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 4/69 (5%)

Query: 93  YSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNHVIRKI--TNLGVTTIAGGGSKKEGR 148
                     F      A D      +Y+    +  I+ I   N  +++     +    R
Sbjct: 128 DGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNR 187

Query: 149 ADGPAQNAS 157
               A N  
Sbjct: 188 IRSIAFNKK 196

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 6/139 (4%)

Query: 50  VIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF 109
           +  R     +   +S  S F      L        L  D          G   F  P   
Sbjct: 39  IFHR--GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL 96

Query: 110 AVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH 169
           ++D  GN +V D + H + K+             +             F    ++   P 
Sbjct: 97  SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNH---FCQPTDVAVEPS 153

Query: 170 ICALLISD-HGNQLIRQIN 187
             A+ +SD + N  I Q +
Sbjct: 154 TGAVFVSDGYCNSRIVQFS 172

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 7/97 (7%)

Query: 94  SDGEPGSARFDKPKSFAVDM-KGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGP 152
           S   P   +F  P S A+      + VAD+ N  I+         +        GR    
Sbjct: 186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF- 244

Query: 153 AQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK 189
               + S      F  +       D        +N  
Sbjct: 245 ----AISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFS 276

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 9/50 (18%), Positives = 16/50 (32%)

Query: 82  VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
              +     +     +P    FD P        G +Y+ D   + + K T
Sbjct: 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 18/118 (15%)

Query: 87  GDGVQGYSDGEPGS-ARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG--VTTIAGGGS 143
            D         PG      +    A+D K N+ +  + +HV    +     V    G G 
Sbjct: 6   HDFHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGP 65

Query: 144 KKEGR------ADGPAQNASFSNDFELTFVPH-ICA-----LLISDHGNQLIRQINLK 189
            +E         +     +S  N F L   PH +         ++D     + +++  
Sbjct: 66  IEEDTILVIDPNNAEILQSSGKNLFYL---PHGLSIDTDGNYWVTDVALHQVFKLDPH 120

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 33/144 (22%)

Query: 45  INPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARF 103
           ++P  V +D  G  ++ V                    V +LA            G    
Sbjct: 24  LSPSGVAVDSAG--NVYVTSEGMY------------GRVVKLATGSTGTTVLPFNG---L 66

Query: 104 DKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFE 163
            +P+  AVD  G +YV D +N V+         T+                    +    
Sbjct: 67  YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD--------------GLNYPEG 112

Query: 164 LTFVPHICALLISDHGNQLIRQIN 187
           L       A+ ++D GN  + ++ 
Sbjct: 113 LAVDTQ-GAVYVADRGNNRVVKLA 135

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 22/112 (19%)

Query: 33  TVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ 91
           T TTV+  + L   P  + +D  G   + V D +               VV   AG   Q
Sbjct: 56  TGTTVLPFNGLY-QPQGLAVDGAG--TVYVTDFNNR-------------VVTLAAGSNNQ 99

Query: 92  GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGG 142
                       + P+  AVD +G +YVAD+ N+ + K+       T+    
Sbjct: 100 TVL----PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 21/112 (18%)

Query: 33  TVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ 91
              TV+    L  +P  V +D  G  ++ V D+  +              V +L  +   
Sbjct: 139 KTQTVLPFTGLN-DPDGVAVDNSG--NVYVTDTDNNR-------------VVKLEAESNN 182

Query: 92  GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGG 142
                         P   AVD  G +YV + + + + K+      +T+    
Sbjct: 183 QVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT 231

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG 134
                + P + AVD    +YVAD+ N  + K+T+L 
Sbjct: 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 54.1 bits (131), Expect = 8e-09
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 88  DGVQGYSDGEPGSA--RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSK 144
             +     GE G    +F +P   AV+ + +I VAD +NH I+     G      G   K
Sbjct: 12  RMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK 71

Query: 145 KEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN 187
           ++ +   P + A   N  ++        ++        I+  N
Sbjct: 72  RDSQLLYPNRVAVVRNSGDI--------IVTERSPTHQIQIYN 106

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 81  VVKRLAGDGVQGYS-DGEP----GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG- 134
           V +R     +Q Y+  G+     G+     P+   VD KG I V +     +      G 
Sbjct: 93  VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN 152

Query: 135 -VTTIAGGG 142
            +       
Sbjct: 153 VLHKFGCSK 161

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG--VTTIAGGGS 143
            S   + P    V+ K  I+++D   H ++     G  +  I G G 
Sbjct: 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI 205

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHV-IRKITNLG--VTTIAGGGS 143
           G    + P    ++  G I +AD  N+  +   T  G  ++ +     
Sbjct: 202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK 249

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGSKKEGRADGPAQNA 156
               +   P    +     ++  +  N+ I +ITN G +       +     A  P    
Sbjct: 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTN-----AAAPVGIT 194

Query: 157 SFSNDFELTFVPHICALLISDHGNQLIRQIN 187
           S ++           AL   +     I +I 
Sbjct: 195 SGNDG----------ALWFVEIMGNKIGRIT 215

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 26/150 (17%)

Query: 39  DGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGE 97
           DG   E +  +    P     I L S  + ++T +    + + + R+   G ++ Y    
Sbjct: 133 DGTIYEYDLPNKGSYPAF---ITLGSDNALWFTEN----QNNSIGRITNTGKLEEYPLPT 185

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNAS 157
             +A    P        G ++  +   + I +IT  G  +              P    +
Sbjct: 186 NAAA----PVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIP----TPNARPHAITA 237

Query: 158 FSNDFELTFVPHICALLISDHGNQLIRQIN 187
             N            +  ++ G   I +I 
Sbjct: 238 GKNS----------EIWFTEWGANQIGRIT 257

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 14/90 (15%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNAS 157
                  K     V   G+I+  +   + I K++  G  T             GP     
Sbjct: 56  EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLP----QPDSGP----- 106

Query: 158 FSNDFELTFVPHICALLISDHGNQLIRQIN 187
               + +T   +   +  +      I ++ 
Sbjct: 107 ----YGITEGLN-GDIWFTQLNGDRIGKLT 131

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 8/103 (7%), Positives = 27/103 (26%), Gaps = 18/103 (17%)

Query: 89  GVQGYSDGE----PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSK 144
           G + + +        S     P        G ++      + I  +   G        + 
Sbjct: 1   GSEAWMNFYLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPT- 59

Query: 145 KEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN 187
            + +      ++                +  +++G   I +++
Sbjct: 60  PDAKVMCLIVSSLG-------------DIWFTENGANKIGKLS 89

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTT---IAGGGS 143
                  +P +        I+  +   + I +ITN        +    +
Sbjct: 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENA 272

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGG 142
           P       P      + G+I+    +   I K+T  G +       
Sbjct: 98  PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPN 143

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 16/89 (17%)

Query: 100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGSKKEGRADGPAQNASF 158
           + +   P    V  KG +++     ++I  I   G +T         + +      ++  
Sbjct: 11  TNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTP--DAKVMCLTISSD- 67

Query: 159 SNDFELTFVPHICALLISDHGNQLIRQIN 187
                         +  +++    I +I 
Sbjct: 68  ------------GEVWFTENAANKIGRIT 84

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 14/90 (15%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNAS 157
               +   P    +     ++  +  N+ I +IT  G  T           A GP     
Sbjct: 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIP----TPASGPVGITK 190

Query: 158 FSNDFELTFVPHICALLISDHGNQLIRQIN 187
            ++D          AL   +     I +I 
Sbjct: 191 GNDD----------ALWFVEIIGNKIGRIT 210

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 82  VKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIA 139
           +  +  DG +  Y    P +    K     +   G ++  + + + I +IT  G +    
Sbjct: 38  ISCINLDGKITEYPLPTPDA----KVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT 93

Query: 140 GGGS 143
               
Sbjct: 94  LPNP 97

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 23/129 (17%)

Query: 60  IVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIY 118
           I L S  + ++T +    + + + R+   G +  +    P S     P          ++
Sbjct: 146 ITLGSDNALWFTEN----QNNAIGRITESGDITEFKIPTPASG----PVGITKGNDDALW 197

Query: 119 VADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH 178
             +   + I +IT  G  T              P    + +             L  ++ 
Sbjct: 198 FVEIIGNKIGRITTSGEITEFKIP----TPNARPHAITAGAGI----------DLWFTEW 243

Query: 179 GNQLIRQIN 187
           G   I ++ 
Sbjct: 244 GANKIGRLT 252

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGS 143
                   P        G+I+  + + + I +IT+ G +        
Sbjct: 93  TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK 139

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 3/47 (6%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGS 143
                  +P +       +++  +   + I ++T+   +        
Sbjct: 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIK 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.76
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.76
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.76
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.54
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.34
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.34
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.3
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.29
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.29
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.19
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.19
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.15
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.08
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.06
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.06
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.0
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.9
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.77
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.75
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.64
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.63
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.57
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.56
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.51
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.48
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.4
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.33
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.3
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.28
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.26
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.21
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.21
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.19
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.16
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.14
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.84
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.81
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.8
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.72
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.67
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.66
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.65
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.59
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.57
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.55
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.45
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.43
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.33
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.28
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.27
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.26
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.23
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.15
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.08
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.05
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.03
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.99
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.99
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.87
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.87
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.84
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.77
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.76
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.76
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.73
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.73
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.71
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.68
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.64
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.61
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.57
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.53
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.51
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.45
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.42
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.32
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.31
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.31
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.2
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.18
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.17
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.15
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.13
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.11
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.1
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.1
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.09
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	96.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.07
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.07
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.07
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.78
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.71
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.7
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.7
3ott_A	758	Two-component system sensor histidine kinase; beta	95.66
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.65
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.6
3ott_A	758	Two-component system sensor histidine kinase; beta	95.57
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.56
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.54
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.43
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.36
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.25
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.25
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.24
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.21
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.2
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.09
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.05
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	94.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	94.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.38
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.29
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.17
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	94.04
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	93.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.88
3jro_A	753	Fusion protein of protein transport protein SEC13	93.76
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	93.71
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	93.57
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.31
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	93.06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	92.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	92.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	92.64
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	92.63
3jro_A	753	Fusion protein of protein transport protein SEC13	92.07
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.03
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	91.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	91.7
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	91.1
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	90.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	90.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	90.64
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	90.44
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	90.33
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	90.09
1k32_A	1045	Tricorn protease; protein degradation, substrate g	89.99
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	89.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	89.68
2pm7_B	297	Protein transport protein SEC13, protein transport	89.59
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	88.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	88.44
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	88.18
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	88.08
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	87.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	87.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.3
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	85.98
2pm7_B	297	Protein transport protein SEC13, protein transport	84.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	84.18
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	84.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.09
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	82.99
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	82.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	82.19
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	82.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	80.79
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	80.19

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=3.3e-23  Score=193.03  Aligned_cols=150  Identities=21%  Similarity=0.291  Sum_probs=124.1

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE---EEEEcC-CcccCCCCCcccccCCCCc-eEEEc-------
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV---KRLAGD-GVQGYSDGEPGSARFDKPK-SFAVD-------  112 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~---~~~~g~-g~~g~~dg~~~~~~~~~P~-giavd-------  112 (269)
                      ..|.+|++++.++.|||+|+.+|+|++++++ ...+.+   .+++|. |..|+.||....++|+.|. +++++       
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d-g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYD-EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEE-TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecC-CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            4699999986545599999999999998753 123343   678886 7788888877789999999 88998       


Q ss_pred             CCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCC-------CCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          113 MKGNIYVADKSNHVIRKITNLGV-TTIAGGGSK-------KEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       113 ~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~-------~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ++|+|||||+.||||++++++|. .+++|.+..       .++..+| .+..++|+.|+||++++++++|||+|+.|+||
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence            78999999999999999999999 999998653       1355566 78889999999999998669999999999999


Q ss_pred             EEEECCCCeEEE
Q 024317          184 RQINLKPEDCSK  195 (269)
Q Consensus       184 ~~~~~~~~~~~~  195 (269)
                      |+|++++.....
T Consensus       469 rki~~~~~~~~~  480 (496)
T 3kya_A          469 RTISMEQEENVA  480 (496)
T ss_dssp             EEEEECCCC---
T ss_pred             EEEECCCCcccc
Confidence            999998876654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=3.8e-22  Score=185.85  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=133.8

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCC----CCCccE------------EEEEcCCcccCCCCCcccccCCCCc
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL----SEESVV------------KRLAGDGVQGYSDGEPGSARFDKPK  107 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~----~~~g~~------------~~~~g~g~~g~~dg~~~~~~~~~P~  107 (269)
                      +.+|.++++++.+++|||+|..+++|+++|+..    ..++.+            ..+...            ..-..|.
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~  313 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEF  313 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCE
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCce
Confidence            468999999877899999999999999998630    002322            111111            0124789


Q ss_pred             eEEEcCCCC-EEEEeCCCCEEEEEeCCcc-------eEEecC-CCCCCCCCCCccccccccCce-EEEEeC------CCC
Q 024317          108 SFAVDMKGN-IYVADKSNHVIRKITNLGV-------TTIAGG-GSKKEGRADGPAQNASFSNDF-ELTFVP------HIC  171 (269)
Q Consensus       108 giavd~~G~-lyVaD~~n~~I~~~~~~g~-------~~~~g~-~~~~~~~~~~~~~~~~l~~P~-gia~~~------~~g  171 (269)
                      +|+++++|+ |||+|+.+|+|++++.++.       .+++|. +.  .++.+|.+..++|+.|. +++++.      .++
T Consensus       314 ~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~--~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g  391 (496)
T 3kya_A          314 QIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ--SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY  391 (496)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB--CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE
T ss_pred             EEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC--CcccCCcccccccCCCeEEEEEccccccccCCC
Confidence            999999999 8999999999999887663       356775 33  23456888899999999 788762      348


Q ss_pred             EEEEEECCCCeEEEEECCCCeEEEecccCc-------cCCC-cccceeeeeccceeeEEEecC-CcEEEEcCCCCccccc
Q 024317          172 ALLISDHGNQLIRQINLKPEDCSKSSQSGS-------ALGA-VSVWVLVSVLSCLVSLVIGFV-ARPYIIRHTGRLDPPL  242 (269)
Q Consensus       172 ~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~-------~~g~-~~~~~~~~~l~~p~gia~d~~-g~lyVad~~g~~~~~~  242 (269)
                      +|||+|+.|+||++|+++|...+..+....       ..|. .........|..|.|||+|++ |+|||+|..+...+.+
T Consensus       392 ~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          392 DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            999999999999999998876666654211       0011 110123347899999999997 9999999655555444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.87  E-value=2.9e-21  Score=178.29  Aligned_cols=178  Identities=10%  Similarity=0.063  Sum_probs=131.6

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa  120 (269)
                      .+..|.++++++.+++|||+|..+++|++++.   .+|.+ ..+...+.            ...|.+|+++++|+ |||+
T Consensus       226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~---~~g~~~~~~~~~~~------------~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP---ATGTLTEEEVMMDT------------KGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             ECSSBCCCEECTTTCCEEECBTTCSEEEEECT---TTCCEEEEEEECSC------------CSSCEEEEECTTSSEEEEE
T ss_pred             ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC---CCCeEEEEEeccCC------------CCCcccEEEeCCCCEEEEE
Confidence            46789999997668999999999999999963   24776 44432211            12456899999998 9999


Q ss_pred             eCCCCEEEEEeCCcc-------eEEecC-CCCCCCCCCCccccccccCceEEEE---------eCCCCEEEEEECCCCeE
Q 024317          121 DKSNHVIRKITNLGV-------TTIAGG-GSKKEGRADGPAQNASFSNDFELTF---------VPHICALLISDHGNQLI  183 (269)
Q Consensus       121 D~~n~~I~~~~~~g~-------~~~~g~-~~~~~~~~~~~~~~~~l~~P~gia~---------~~~~g~LyVaD~~n~~I  183 (269)
                      |..+++|++++.++.       .+++|. +.  .++.++.+..++|+.|.+|++         +++ ++|||+|..|++|
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~--~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I  367 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSS--PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTV  367 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTC--CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCC--CccCCCcccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEE
Confidence            999999999986532       466665 22  234567777889999999999         654 9999999999999


Q ss_pred             EEEECCCCeEEEecccC---ccCCCcccceeeeeccceeeEEEe-cCCcEEEEcC-CCCcc
Q 024317          184 RQINLKPEDCSKSSQSG---SALGAVSVWVLVSVLSCLVSLVIG-FVARPYIIRH-TGRLD  239 (269)
Q Consensus       184 ~~~~~~~~~~~~~~~~g---~~~g~~~~~~~~~~l~~p~gia~d-~~g~lyVad~-~g~~~  239 (269)
                      ++|+++|...+..+...   .+...+ .......|..|.|||+| ++|+|||+|. ++|++
T Consensus       368 ~~~~~~G~v~t~~G~g~~~~~G~~dG-~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          368 RVLTPEGRVTTYAGRGNSREWGYVDG-ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             EEECTTSEEEEEECCCTTCSSCCBCE-ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             EEECCCCCEEEEEeCCCCCccccCCC-ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            99999886666655431   011111 01222357899999999 8999999995 44444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=8.7e-20  Score=161.45  Aligned_cols=195  Identities=21%  Similarity=0.208  Sum_probs=134.3

Q ss_pred             CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc---EEEEEcCCcccCCCCCcccccCCCCc
Q 024317           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGVQGYSDGEPGSARFDKPK  107 (269)
Q Consensus        31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~---~~~~~g~g~~g~~dg~~~~~~~~~P~  107 (269)
                      |..+..+  +...+..|.+|+++ .+|++||+|..+++|++++    .+|.   +..+...+..+.     ....+..|.
T Consensus        79 g~~~~~~--~~~~~~~p~gia~d-~~g~l~v~d~~~~~v~~~~----~~g~~~~~~~~~~~~~~g~-----~~~~~~~P~  146 (329)
T 3fvz_A           79 AEILQSS--GKNLFYLPHGLSID-TDGNYWVTDVALHQVFKLD----PHSKEGPLLILGRSMQPGS-----DQNHFCQPT  146 (329)
T ss_dssp             CCEEEEE--CTTTCSSEEEEEEC-TTSCEEEEETTTTEEEEEC----TTCSSCCSEEESBTTBCCC-----STTCCSSEE
T ss_pred             CeEEecc--CCCccCCceEEEEC-CCCCEEEEECCCCEEEEEe----CCCCeEEEEEecccCCCCC-----CccccCCCc
Confidence            4444443  33567899999996 5888999999999999995    4554   333332222222     234688999


Q ss_pred             eEEEcC-CCCEEEEeC-CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          108 SFAVDM-KGNIYVADK-SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       108 giavd~-~G~lyVaD~-~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      +|++++ +|+|||+|. .+++|++++++|. ....+.....     ..+..+.|..|++|++++++++|||+|..+++|+
T Consensus       147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~-----~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG-----SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ  221 (329)
T ss_dssp             EEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS-----SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC-----CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence            999999 899999996 7999999999998 4433321110     1122356899999999998799999999999999


Q ss_pred             EEECC-CCeEEEecccCcc----------------CC----------Ccccc--------e-e---eeeccceeeEEEec
Q 024317          185 QINLK-PEDCSKSSQSGSA----------------LG----------AVSVW--------V-L---VSVLSCLVSLVIGF  225 (269)
Q Consensus       185 ~~~~~-~~~~~~~~~~g~~----------------~g----------~~~~~--------~-~---~~~l~~p~gia~d~  225 (269)
                      +|+.+ +..+..+.....+                .+          ....|        . .   ...+..|.+|++++
T Consensus       222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          222 CFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             EEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred             EEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence            99998 6655444221100                00          00000        0 0   12456799999999


Q ss_pred             CCcEEEEcC-CCCccccc
Q 024317          226 VARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       226 ~g~lyVad~-~g~~~~~~  242 (269)
                      +|++||+|. +++++.-.
T Consensus       302 dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             TSEEEEEESSSCCEEEEE
T ss_pred             CCCEEEEECCCCEEEEEe
Confidence            999999994 55555443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.86  E-value=5.2e-20  Score=168.52  Aligned_cols=182  Identities=15%  Similarity=0.128  Sum_probs=131.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCc-eEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPK-SFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~-giavd~-~G~lyVa  120 (269)
                      .+..|.++++++.+++|||+|. +++|+++|.   ..+....+.+.+..+.        .-..|. +|++++ +|+|||+
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~---~~~~~~~~~~~~~~g~--------~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNV---KTQEVTLIKQLELSGS--------LGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT-TCEEEEEET---TTCCEEEEEECCCCSC--------CCCSSCCEEEEETTTTEEEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEEC---CCCCEEEEecccccCC--------CCCCccccEEEeCCCCEEEEE
Confidence            4678999999876899999886 789999985   3445555543321110        112366 999999 6889999


Q ss_pred             eCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-CCCeEEEEE-CCCCeEEEec
Q 024317          121 DKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-GNQLIRQIN-LKPEDCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-~n~~I~~~~-~~~~~~~~~~  197 (269)
                      |..+++|++++.+|. .+++|... ..+..++.+..++|..|++|+++++ |+|||+|. .+++|++|+ .++...+..+
T Consensus       285 d~~~~~I~~~~~~g~~~~~~g~~~-~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          285 DQNLSSVYKITPDGECEWFCGSAT-QKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             ETTTTEEEEECTTCCEEEEEECTT-CCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred             eCCCCEEEEEecCCCEEEEEeCCC-CCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence            999999999999998 77877641 2234556667788999999999998 78999999 999999999 5555444444


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC-CCcc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-GRLD  239 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-g~~~  239 (269)
                      ..+. .+..........+..|.|||+|++|+|||+|.. ++++
T Consensus       363 ~~~~-~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          363 QVDV-ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             CTTC-BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             CCCC-CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            3211 110000112235788999999999999999954 4443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.4e-20  Score=171.88  Aligned_cols=180  Identities=12%  Similarity=0.060  Sum_probs=129.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      .+.+|.++++++.+++|||+|..+++|++++.   ..+....+...+            ....|.+|+++++|+ |||+|
T Consensus       224 ~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~---~~~~~~~~~~~~------------~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          224 KGQNCNGAETHPINGELYFNSWNAGQVFRYDF---TTQETTPLFTIQ------------DSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             ECSSCCCEEECTTTCCEEEEETTTTEEEEEET---TTTEEEEEEECS------------SSSCCEEEEECTTSSEEEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC---CCCcEEEEEEcC------------CCCcceeEEEcCCCCEEEEEE
Confidence            36789999998668999999999999999974   233332332211            124799999999999 99999


Q ss_pred             CCCCEEEEEeCCcc-------eEEecCCCCCCCCCCCccccccccCce-EEEEeC-------CCCEEEEEECCCCeEEEE
Q 024317          122 KSNHVIRKITNLGV-------TTIAGGGSKKEGRADGPAQNASFSNDF-ELTFVP-------HICALLISDHGNQLIRQI  186 (269)
Q Consensus       122 ~~n~~I~~~~~~g~-------~~~~g~~~~~~~~~~~~~~~~~l~~P~-gia~~~-------~~g~LyVaD~~n~~I~~~  186 (269)
                      ..+++|++++.++.       .++++.. ...+..++....++|+.|. ++++++       .+++|||+|.+|+||++|
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i  367 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL  367 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence            99999999987752       3556542 1123445666678899999 899852       248999999999999999


Q ss_pred             ECCCCeEEEecccCcc-CC--CcccceeeeeccceeeEEEec-CCcEEEEcC-CCCcc
Q 024317          187 NLKPEDCSKSSQSGSA-LG--AVSVWVLVSVLSCLVSLVIGF-VARPYIIRH-TGRLD  239 (269)
Q Consensus       187 ~~~~~~~~~~~~~g~~-~g--~~~~~~~~~~l~~p~gia~d~-~g~lyVad~-~g~~~  239 (269)
                      +++|...+..+....+ .|  .+. ......|..|.|||+|+ +|+|||+|. ++|++
T Consensus       368 ~~~G~v~~~~g~g~~~~~G~~dG~-~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  424 (430)
T 3tc9_A          368 TPQGRVTTFAGRGSNGTSGYNDGD-LRQEARFNHPEGIVYDEERECFFIGDRENRRIR  424 (430)
T ss_dssp             CTTSEEEEEEECCTTSSSSCBCEE-TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             CCCCcEEEEEeCCCCCCCcccCCC-chhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            9988766666542100 11  110 11223578999999998 689999995 44444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=1.4e-19  Score=160.04  Aligned_cols=171  Identities=16%  Similarity=0.200  Sum_probs=128.5

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCCC------------------------EEEEEecCCCCCccEEEEEcCCcccCCCCC
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSRS------------------------AFYTLSFPLSEESVVKRLAGDGVQGYSDGE   97 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~~------------------------~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~   97 (269)
                      ..+..|.+|+++ .+|++||++..++                        +|+++|.   .+|++....+.         
T Consensus        21 ~~l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~---~~g~~~~~~~~---------   87 (329)
T 3fvz_A           21 LLPGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP---NNAEILQSSGK---------   87 (329)
T ss_dssp             CCCSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT---TTCCEEEEECT---------
T ss_pred             eecCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC---CCCeEEeccCC---------
Confidence            467889999996 5899999999884                        5888852   35777665433         


Q ss_pred             cccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEE
Q 024317           98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICAL  173 (269)
Q Consensus        98 ~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~L  173 (269)
                         ..|..|.+|++|++|+|||+|..+++|++++++|.    ..+...+..+.       ....+..|++|++++++++|
T Consensus        88 ---~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~-------~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           88 ---NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS-------DQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             ---TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC-------STTCCSSEEEEEECTTTCCE
T ss_pred             ---CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC-------CccccCCCcEEEEeCCCCeE
Confidence               35789999999999999999999999999999885    33322211110       12358899999999955999


Q ss_pred             EEEEC-CCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecC-CcEEEEcC-CCCccc
Q 024317          174 LISDH-GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRH-TGRLDP  240 (269)
Q Consensus       174 yVaD~-~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~-~g~~~~  240 (269)
                      ||+|. .+++|++|+.++..+..++..+.....     ....+..|.||++|++ |++||+|. +++++.
T Consensus       158 yv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~-----~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSP-----RPGQFSVPHSLALVPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             EEEECSSCCEEEEECTTSCEEEEECEECCSSSC-----CTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCC-----CCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence            99997 799999999999888777655322110     0115678999999998 89999994 444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.85  E-value=1.8e-20  Score=173.00  Aligned_cols=144  Identities=22%  Similarity=0.341  Sum_probs=117.8

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc---cEEEEEcC-CcccCCCCCcccccCCCCceEEE---------
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES---VVKRLAGD-GVQGYSDGEPGSARFDKPKSFAV---------  111 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g---~~~~~~g~-g~~g~~dg~~~~~~~~~P~giav---------  111 (269)
                      ..|.+|++++.++.|||+|..+|+|++++++. ..+   ...+++|. +..++.+|....++|+.|.+|++         
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~-~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR-ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCT-TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC-CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            34678999875556999999999999998641 223   34577776 66777777667789999999999         


Q ss_pred             cCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCC-CCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          112 DMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSK-KEGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       112 d~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~-~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                      |.+|+|||||+.|+||++++++|. .+++|.+.. ..++.++ .+..++|+.|++|++++.+++|||+|.+|+||++|++
T Consensus       352 d~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          352 EDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            999999999999999999999999 899987541 1234555 6677899999999999555999999999999999987


Q ss_pred             C
Q 024317          189 K  189 (269)
Q Consensus       189 ~  189 (269)
                      +
T Consensus       432 e  432 (433)
T 4hw6_A          432 E  432 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.84  E-value=5e-20  Score=168.65  Aligned_cols=138  Identities=23%  Similarity=0.393  Sum_probs=118.3

Q ss_pred             Ccc-eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEcCCCCEEEEeC-
Q 024317           46 NPH-SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK-  122 (269)
Q Consensus        46 ~P~-giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~-  122 (269)
                      .|. +|++++.+++|||+|..+++|+++    +.+|.+.+++|.+ ..++.++....++|+.|.+|++|++|+|||+|+ 
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~----~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~  342 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKI----TPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF  342 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEE----CTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEE----ecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence            477 999987689999999999999999    5677788888875 566767755668899999999999999999999 


Q ss_pred             CCCEEEEEe-CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          123 SNHVIRKIT-NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       123 ~n~~I~~~~-~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      .+++|++++ ++|. .+++|.+.. .+..++.+..++|..|++|+++++ ++|||+|..|+||++++++
T Consensus       343 ~~~~I~~~~~~~G~v~~~~g~~~~-~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVSTVAGQVDV-ASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTCEEEEEETTTTEEEEEEECTTC-BSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCC-CCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence            999999999 8898 888886322 344566667788999999999998 9999999999999999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=9.6e-20  Score=167.89  Aligned_cols=144  Identities=24%  Similarity=0.350  Sum_probs=116.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc---EEEEEcC-CcccCCCCCcccccCCCCc-eEEE--------
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGD-GVQGYSDGEPGSARFDKPK-SFAV--------  111 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~---~~~~~g~-g~~g~~dg~~~~~~~~~P~-giav--------  111 (269)
                      ..|.+|++++.+..|||+|..+++|++++.+. ..+.   +.+++|. +..++.++....++|+.|. ++++        
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~-~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW-KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEET-TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc-ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            57999999864445999999999999997531 1232   4567775 6667777655678899999 8999        


Q ss_pred             cCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCC-CCCCCC-ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          112 DMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKK-EGRADG-PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       112 d~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~-~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                      |++|+|||||..|+||++++++|. .+++|.+..+ .+..++ .+..++|+.|++|++++++++|||+|..|+||+++++
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            467999999999999999999999 8888875422 233345 6777889999999999966999999999999999987


Q ss_pred             C
Q 024317          189 K  189 (269)
Q Consensus       189 ~  189 (269)
                      +
T Consensus       429 e  429 (430)
T 3tc9_A          429 E  429 (430)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=6.1e-19  Score=158.14  Aligned_cols=153  Identities=17%  Similarity=0.125  Sum_probs=119.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      .+..|.||++++.+++||++|..+++|.++++    +|.......            ...+..|.+|++|+ +|.||++|
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~----dG~~~~~l~------------~~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANL----DGAHRKVLL------------WQSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEE------------CTTCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcC----CCCceEEEE------------eCCCCCcceEEEecCcCeEEEec
Confidence            45689999998778999999999999999965    443222221            12477999999997 77899999


Q ss_pred             CCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc
Q 024317          122 KSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       122 ~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~  199 (269)
                      .++ ++|.+++.+|. ......              ..+..|+||+++++++.||++|..+++|++++.+|.....+...
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~~--------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~  243 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIAD--------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ  243 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESCC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             cCCCCEEEEEeCCCCCcEEEEE--------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC
Confidence            998 99999999997 443321              12788999999987799999999999999999988654333222


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                                    .+..|.||+++ .+++|++| .++++..
T Consensus       244 --------------~~~~P~giav~-~~~ly~td~~~~~V~~  270 (349)
T 3v64_C          244 --------------GLPHPFAITVF-EDSLYWTDWHTKSINS  270 (349)
T ss_dssp             --------------SCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             --------------CCCCceEEEEE-CCEEEEecCCCCeEEE
Confidence                          24679999996 68999999 4555543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.81  E-value=4.2e-18  Score=152.70  Aligned_cols=154  Identities=15%  Similarity=0.136  Sum_probs=120.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      .+..|.+|++++.++.||++|..+++|+++++.   .+....+..             ..+..|.||++|. .|+||++|
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~---g~~~~~~~~-------------~~~~~p~glavd~~~g~ly~~d  134 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLN---GSNVEEVVS-------------TGLESPGGLAVDWVHDKLYWTD  134 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---SCSCEEEEC-------------SSCSCCCEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecC---CCCceEEEe-------------CCCCCccEEEEecCCCeEEEEc
Confidence            466899999987889999999999999999752   222333321             2357899999996 78899999


Q ss_pred             CCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEeccc
Q 024317          122 KSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       122 ~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~~~  199 (269)
                      ..+++|.+++.+|. ......              ..+..|++|+++|.++.||++|.++ ++|++++.+|.........
T Consensus       135 ~~~~~I~~~~~dG~~~~~l~~--------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          135 SGTSRIEVANLDGAHRKVLLW--------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             TTTTEEEEEETTSCSCEEEEC--------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             CCCCeEEEEcCCCCceEEEEe--------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            99999999999997 333221              2278899999999879999999998 9999999998765544322


Q ss_pred             CccCCCcccceeeeeccceeeEEEec-CCcEEEEcC-CCCccc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRH-TGRLDP  240 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~-~g~~~~  240 (269)
                                    .+..|.||++|+ .++||++|. .+++..
T Consensus       201 --------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          201 --------------HLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             --------------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --------------CCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence                          246799999995 669999994 444543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.81  E-value=1.5e-18  Score=153.75  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=118.6

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      .+..|.|||+++.+++||++|..+++|.++++    +|.......            ...+..|.+|++|+ .|.||++|
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~----dG~~~~~l~------------~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNL----DGSLRKVLF------------WQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEE------------CSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEEC----CCCcEEEEE------------eCCCCCccEEEEeCCCCEEEEEe
Confidence            45689999998678999999999999999964    443222221            12467999999997 68899999


Q ss_pred             CC-CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          122 KS-NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       122 ~~-n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      .+ +++|.+++.+|.  ..+...               .+..|+||+++++++.||++|+.+++|++++.+|.....+..
T Consensus       141 ~~~~~~I~r~~~dG~~~~~~~~~---------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  205 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSRFIIINS---------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK  205 (318)
T ss_dssp             CSSSCEEEEEETTSCSCEEEECS---------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             cCCCCEEEEEEcCCCCeEEEEEC---------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec
Confidence            75 799999999997  344321               278999999999779999999999999999999865444332


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                      .              .+..|.||+++ .+.+|++| .++++..
T Consensus       206 ~--------------~~~~P~glav~-~~~lywtd~~~~~V~~  233 (318)
T 3sov_A          206 G--------------SLPHPFALTLF-EDILYWTDWSTHSILA  233 (318)
T ss_dssp             S--------------CCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             C--------------CCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence            1              34779999998 56899999 4555553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.81  E-value=4.4e-18  Score=154.54  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      .+..|.+|++++.++.||++|..+++|+++++.   .+....+...             .+..|.||++|. .|+||++|
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~---g~~~~~~~~~-------------~~~~p~glavd~~~g~lY~~d  177 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLN---GSNVEEVVST-------------GLESPGGLAVDWVHDKLYWTD  177 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---SCCEEEEECS-------------SCSCCCCEEEETTTTEEEEEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecC---CCCcEEEEeC-------------CCCCccEEEEEeCCCeEEEEc
Confidence            466899999987789999999999999999642   2234444322             367899999996 78899999


Q ss_pred             CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEecc
Q 024317          122 KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       122 ~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~~  198 (269)
                      ..+++|.+++.+|.  ..+..               ..+..|++|+++|.++.||++|.++ ++|++++.+|........
T Consensus       178 ~~~~~I~~~~~dg~~~~~l~~---------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          178 SGTSRIEVANLDGAHRKVLLW---------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             TTTTEEEECBTTSCSCEEEEC---------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             CCCCeEEEEeCCCCceEEeec---------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            99999999999987  33332               1278899999999889999999998 999999999876554433


Q ss_pred             cCccCCCcccceeeeeccceeeEEEec-CCcEEEEcC-CCCccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRH-TGRLDP  240 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~-~g~~~~  240 (269)
                      .              .+..|.||++|+ .++||++|. .++++.
T Consensus       243 ~--------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          243 T--------------HLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             S--------------SCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             C--------------CCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            2              246799999994 669999994 444543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.80  E-value=1.9e-18  Score=156.98  Aligned_cols=151  Identities=19%  Similarity=0.118  Sum_probs=118.2

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.||++++.+++||++|..+++|.++++    +|.. ..+.             ...+..|.+|++|+ +|.||++
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~----dg~~~~~l~-------------~~~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANL----DGAHRKVLL-------------WQSLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBT----TSCSCEEEE-------------CSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC----CCCceEEee-------------cCCCCCCcEEEEEcCCCeEEEe
Confidence            45689999998778999999999999999964    4432 2222             12467999999996 6779999


Q ss_pred             eCCC-CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKSN-HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      |..+ ++|.+++.+|.  ..+...               .+..|+||+++++++.||++|..+++|++++.++.....+.
T Consensus       220 d~~~~~~I~r~~~dG~~~~~~~~~---------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (386)
T 3v65_B          220 DWGNTPRIEASSMDGSGRRIIADT---------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI  284 (386)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECS---------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEEC---------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE
Confidence            9988 99999999997  344321               27789999999877999999999999999999886544332


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP  240 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~  240 (269)
                      ..              .+..|.||+++ .+.+|++|. ++++..
T Consensus       285 ~~--------------~~~~P~giav~-~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          285 SQ--------------GLPHPFAITVF-EDSLYWTDWHTKSINS  313 (386)
T ss_dssp             CS--------------SCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EC--------------CCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence            22              24679999996 679999994 555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=4e-18  Score=150.66  Aligned_cols=154  Identities=17%  Similarity=0.053  Sum_probs=119.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.||+++..+++||++|..+++|.++++    +|. ..++..             ..+..|.+|++|+ +|.||++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~----~g~~~~~~~~-------------~~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR-------------ENGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSSSEEEEEE-------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeC----CCCceEEEEE-------------CCCCCcceEEeCCCCCEEEEE
Confidence            45789999997668999999999999999964    443 333321             2367999999997 7789999


Q ss_pred             eCCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          121 DKSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      |.++ ++|.+++.+|. ......              ..+..|+||+++++++.||++|..+++|.+++.+|.....+..
T Consensus       138 d~~~~~~I~~~~~dG~~~~~~~~--------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~  203 (316)
T 1ijq_A          138 DWGTPAKIKKGGLNGVDIYSLVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  203 (316)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             ccCCCCeEEEEcCCCCCeEEEEE--------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee
Confidence            9886 89999999998 443321              1278999999998889999999999999999999865444332


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP  240 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~  240 (269)
                      .    .        ..+..|.||+++ .+++|++|. ++++..
T Consensus       204 ~----~--------~~~~~P~giav~-~~~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          204 D----E--------KRLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (316)
T ss_dssp             C----T--------TTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             c----C--------CccCCcEEEEEE-CCEEEEEECCCCeEEE
Confidence            1    0        034679999998 589999994 455553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.79  E-value=1e-17  Score=148.07  Aligned_cols=155  Identities=17%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.++++++.++.||++|..+++|+++++..... .....+.             ...+..|.||++|. .++||++
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-------------~~~~~~p~glavd~~~~~ly~~   94 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------SRDIQAPDGLAVDWIHSNIYWT   94 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------CSSCSCCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-------------eCCCCCcCEEEEeecCCeEEEE
Confidence            4678999999877899999999999999997521000 1122222             12467999999995 7789999


Q ss_pred             eCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEec
Q 024317          121 DKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~  197 (269)
                      |..+++|.+++.+|.  ..+..               ..+..|++|+++|.++.||++|.++ ++|.+++.+|.......
T Consensus        95 d~~~~~I~~~~~~g~~~~~~~~---------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~  159 (316)
T 1ijq_A           95 DSVLGTVSVADTKGVKRKTLFR---------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (316)
T ss_dssp             ETTTTEEEEEETTSSSEEEEEE---------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ECCCCEEEEEeCCCCceEEEEE---------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence            999999999999987  33332               1267899999999779999999986 89999999987665443


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecC-CcEEEEcC-CCCcc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRH-TGRLD  239 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~-~g~~~  239 (269)
                      ..              .+..|.||++|++ ++||++|. .+++.
T Consensus       160 ~~--------------~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          160 TE--------------NIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             CS--------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EC--------------CCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            22              2467999999964 69999994 44554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.79  E-value=9.1e-18  Score=153.23  Aligned_cols=154  Identities=17%  Similarity=0.043  Sum_probs=119.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.|||++..+++||++|..+++|.++++    +|. ..+++.             ..+..|.+|++|+ .|.||++
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~----~g~~~~~l~~-------------~~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR-------------ENGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECT----TTCSEEEEEE-------------CSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeC----CCCceEEEEe-------------CCCCCcceEEEecccCeEEEE
Confidence            46689999998668999999999999999964    444 333321             2477899999997 6789999


Q ss_pred             eCC-CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          121 DKS-NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~-n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      |.+ +++|.+++.+|. ......              ..+..|+||++|++++.||++|..+++|++++.+|.....+..
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~~~--------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  285 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSLVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  285 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEEEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE
T ss_pred             eCCCCCEEEEEeCCCCccEEEEE--------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe
Confidence            987 589999999997 333221              1278999999998889999999999999999999875544432


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                      .   .+         .+..|.||+++ .+++|++| .+++++.
T Consensus       286 ~---~~---------~l~~P~gl~v~-~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          286 D---EK---------RLAHPFSLAVF-EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             C---SS---------TTSSEEEEEEE-TTEEEEEESSSCSEEE
T ss_pred             C---CC---------CCCCCEEEEEe-CCEEEEecCCCCeEEE
Confidence            1   00         34779999996 57899999 4556553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.79  E-value=8.1e-18  Score=153.56  Aligned_cols=156  Identities=16%  Similarity=0.141  Sum_probs=119.4

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC-CccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~-~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.+|++++.++.||++|..+++|+++++.... .+....++.             ..+..|.||++|. .++||++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------------~~~~~p~glavD~~~~~lY~~  176 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------RDIQAPDGLAVDWIHSNIYWT  176 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------------SSCSCEEEEEEETTTTEEEEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------------CCCCCcccEEEEecCCceEEE
Confidence            467999999987789999999999999999752100 012233332             2467999999997 7889999


Q ss_pred             eCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEec
Q 024317          121 DKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~  197 (269)
                      |..+++|.+++.+|.  ..+..               ..+..|.+|+++|.++.||++|.+ +++|++++.+|.......
T Consensus       177 d~~~~~I~~~~~~g~~~~~l~~---------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          177 DSVLGTVSVADTKGVKRKTLFR---------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             ETTTTEEEEECTTTCSEEEEEE---------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ECCCCeEEEEeCCCCceEEEEe---------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            999999999999997  33332               127889999999987999999987 489999999987654443


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEec-CCcEEEEcC-CCCccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRH-TGRLDP  240 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~-~g~~~~  240 (269)
                      ..              .+..|.||++|+ .++||++|. .++++.
T Consensus       242 ~~--------------~l~~P~glavd~~~~~lY~aD~~~~~I~~  272 (400)
T 3p5b_L          242 TE--------------NIQWPNGITLDLLSGRLYWVDSKLHSISS  272 (400)
T ss_dssp             CS--------------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EC--------------CCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence            22              346799999995 569999994 445543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.78  E-value=2.2e-17  Score=141.54  Aligned_cols=152  Identities=14%  Similarity=0.048  Sum_probs=115.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~  123 (269)
                      .+|+++++++.+++||++|..+++|+++++.   .+....+..             ..+..|.+|++|+ .++|||+|..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~---g~~~~~~~~-------------~~~~~p~~ia~d~~~~~lyv~d~~   99 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLH---GGEPTTIIR-------------QDLGSPEGIALDHLGRTIFWTDSQ   99 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESS---SCCCEEEEC-------------TTCCCEEEEEEETTTTEEEEEETT
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecC---CCCcEEEEE-------------CCCCCccEEEEEecCCeEEEEECC
Confidence            4789999987789999999999999999752   222333321             2357999999998 5779999999


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEEEeccc
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~~~~~~  199 (269)
                      +++|.+++.+|.  ..+...               .+..|++|+++++++.|||+|..  +++|++++.++.........
T Consensus       100 ~~~I~~~~~~g~~~~~~~~~---------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~  164 (267)
T 1npe_A          100 LDRIEVAKMDGTQRRVLFDT---------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (267)
T ss_dssp             TTEEEEEETTSCSCEEEECS---------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             CCEEEEEEcCCCCEEEEEEC---------------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence            999999999986  333321               26789999999977999999987  68999999987654332211


Q ss_pred             CccCCCcccceeeeeccceeeEEEecC-CcEEEEcC-CCCcccc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRH-TGRLDPP  241 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~-~g~~~~~  241 (269)
                                    .+..|.||++|++ ++||++|. .+++...
T Consensus       165 --------------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          165 --------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             --------------TCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             --------------CCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence                          2367999999996 48999995 4555433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.78  E-value=1.1e-17  Score=164.34  Aligned_cols=154  Identities=17%  Similarity=0.053  Sum_probs=120.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.|||++..+++||++|..+++|.++++    +|. ..+++.             ..+..|.+|++|+ .|.||++
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l----dG~~~~~l~~-------------~~l~~P~gIaVDp~~g~LYwt  531 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR-------------ENGSKPRAIVVDPVHGFMYWT  531 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSSSEEEEEE-------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeC----CCCeEEEEEe-------------CCCCCcceEEEecCCCCEEEe
Confidence            56789999998778899999999999999975    444 333321             2467899999998 5889999


Q ss_pred             eCCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          121 DKSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      |.++ ++|.+++.+|. ......              ..+..|+||++|+.++.|||+|..+++|++++.+|.....+..
T Consensus       532 D~g~~~~I~~~~~dG~~~~~lv~--------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~  597 (791)
T 3m0c_C          532 DWGTPAKIKKGGLNGVDIYSLVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  597 (791)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             cCCCCCeEEEEecCCCceEEEEe--------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec
Confidence            9886 89999999998 433322              2278999999998889999999999999999999876554432


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                      ..            ..+..|.+|+++ .++||++| .+++++.
T Consensus       598 ~~------------~~l~~P~glav~-~~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          598 DE------------KRLAHPFSLAVF-EDKVFWTDIINEAIFS  627 (791)
T ss_dssp             CT------------TTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CC------------CccCCCCEEEEe-CCEEEEEECCCCEEEE
Confidence            20            134779999997 46999999 4555553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.78  E-value=1.7e-17  Score=147.03  Aligned_cols=154  Identities=13%  Similarity=0.084  Sum_probs=117.3

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~  122 (269)
                      +..|.+|++++.++.||++|..+++|+++++.  .......+.             ...+..|.||++|. .|+||++|.
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~--g~~~~~~~~-------------~~~l~~p~glavd~~~g~ly~~d~   98 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNVV-------------VSGLLSPDGLACDWLGEKLYWTDS   98 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETT--SSSCCCEEE-------------EECCSCCCEEEEETTTTEEEEEET
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEcc--CCCceEEEE-------------cCCCCCccEEEEEcCCCeEEEEEC
Confidence            34789999987789999999999999999752  111111111             12367899999996 788999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEecccC
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      .+++|.+++.+|. ......              ..+..|++|++++.++.||++|.+ +++|++++.+|......... 
T Consensus        99 ~~~~I~~~~~dG~~~~~l~~--------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-  163 (318)
T 3sov_A           99 ETNRIEVSNLDGSLRKVLFW--------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-  163 (318)
T ss_dssp             TTTEEEEEETTSCSCEEEEC--------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS-
T ss_pred             CCCEEEEEECCCCcEEEEEe--------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC-
Confidence            9999999999997 333221              127889999999977999999976 78999999998755443322 


Q ss_pred             ccCCCcccceeeeeccceeeEEEec-CCcEEEEcC-CCCccc
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRH-TGRLDP  240 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~-~g~~~~  240 (269)
                                   .+..|.||++|+ .++||++|. .++++.
T Consensus       164 -------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          164 -------------EIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             -------------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -------------CCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence                         246799999997 669999994 455543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=4.4e-17  Score=140.14  Aligned_cols=153  Identities=15%  Similarity=0.169  Sum_probs=119.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..|.+|+++ .+|++||++..+++|++++    .+|+.....+.           ...+..|.+|++|++|++||+|.
T Consensus       119 ~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~----~~g~~~~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          119 ILQHPRGVTVD-NKGRIIVVECKVMRVIIFD----QNGNVLHKFGC-----------SKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             TCSCEEEEEEC-TTSCEEEEETTTTEEEEEC----TTSCEEEEEEC-----------TTTCSSEEEEEECSSSEEEEEEG
T ss_pred             cCCCceEEEEe-CCCCEEEEECCCCEEEEEc----CCCCEEEEeCC-----------CCccCCcEEEEECCCCCEEEEEC
Confidence            45689999996 4789999999999999994    56665544432           12356899999999999999999


Q ss_pred             CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC-eEEEEECCCCeEEEeccc
Q 024317          123 SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ-LIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       123 ~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~-~I~~~~~~~~~~~~~~~~  199 (269)
                      .+++|++++++|.  ..+...              ..+..|.+|+++++ |+|||++..++ +|++|+.++..+..+...
T Consensus       183 ~~~~i~~~~~~g~~~~~~~~~--------------g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          183 RAHCVKVFNYEGQYLRQIGGE--------------GITNYPIGVGINSN-GEILIADNHNNFNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             GGTEEEEEETTCCEEEEESCT--------------TTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred             CCCEEEEEcCCCCEEEEEccC--------------CccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence            9999999999887  333321              12678999999997 89999999886 999999988766554332


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                          .         ....|.+|+++++|++||++.++++.
T Consensus       248 ----~---------~~~~~~~i~~~~~g~l~vs~~~~~v~  274 (286)
T 1q7f_A          248 ----V---------KHAQCFDVALMDDGSVVLASKDYRLY  274 (286)
T ss_dssp             ----S---------CCSCEEEEEEETTTEEEEEETTTEEE
T ss_pred             ----C---------CCCcceeEEECCCCcEEEECCCCeEE
Confidence                0         12458999999999999998665553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.77  E-value=1.8e-17  Score=162.94  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC-CccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC-CCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~-~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~-G~lyVa  120 (269)
                      .+..|.+|+++..++.||++|..+++|+++++.... .+....++.             ..+..|.|||+|.. ++||++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------------~~l~~P~GLAvD~~~~~LY~t  488 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------RDIQAPDGLAVDWIHSNIYWT  488 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------------SSCSCCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-------------cCCCCcceeeeeecCCcEEEE
Confidence            467899999987789999999999999999753100 012333332             24779999999975 479999


Q ss_pred             eCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEec
Q 024317          121 DKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~  197 (269)
                      |..+++|++++.+|.  .++..               ..+..|.+||+++..+.||++|.++ ++|++++++|.....+.
T Consensus       489 D~~~~~I~v~~ldG~~~~~l~~---------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          489 DSVLGTVSVADTKGVKRKTLFR---------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             ETTTTEEEEEETTSSSEEEEEE---------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ecCCCeEEEEeCCCCeEEEEEe---------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            999999999999998  44433               1277899999999889999999987 89999999998766554


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEe-cCCcEEEEcC-CCCcc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIG-FVARPYIIRH-TGRLD  239 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d-~~g~lyVad~-~g~~~  239 (269)
                      ..              .+..|.||++| ..++||++|. .++|+
T Consensus       554 ~~--------------~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          554 TE--------------NIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             CS--------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eC--------------CCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            33              34679999999 5679999994 34444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.77  E-value=2.3e-17  Score=141.40  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=116.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.+|++++.+++|||+|..+++|.++++    +|. ...+..             ..+..|.+|++|+ +|.|||+
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~----~g~~~~~~~~-------------~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM----DGTQRRVLFD-------------TGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEC-------------SSCSSEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEc----CCCCEEEEEE-------------CCCCCccEEEEeeCCCEEEEE
Confidence            35689999998668999999999999999975    332 222221             1356899999999 6789999


Q ss_pred             eCC--CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKS--NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~--n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      |..  +++|.+++.+|. ......              ..+..|++|+++++++.|||+|..+++|++++.++.......
T Consensus       140 ~~~~~~~~I~~~~~dg~~~~~~~~--------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  205 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNRRILAQ--------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEEC--------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             ECCCCCcEEEEEecCCCCcEEEEE--------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence            987  689999999987 333221              126789999999987899999999999999999875443321


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                      .               .+..|.||++| .+++||++. ++++...+
T Consensus       206 ~---------------~~~~P~gi~~d-~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          206 E---------------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             E---------------CCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             c---------------CCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence            1               23669999999 689999995 46665444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=1.2e-16  Score=137.35  Aligned_cols=156  Identities=17%  Similarity=0.166  Sum_probs=121.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCC-CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~-~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      .+..|.+|++++.++++||++.. +++|+++|    .+|+.....+.            ..+..|.+|+++++|++||+|
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d----~~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~  138 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN----QYGQFVRKFGA------------TILQHPRGVTVDNKGRIIVVE  138 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC----TTSCEEEEECT------------TTCSCEEEEEECTTSCEEEEE
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC----CCCcEEEEecC------------ccCCCceEEEEeCCCCEEEEE
Confidence            46789999996568999999975 89999994    56766554322            135689999999999999999


Q ss_pred             CCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317          122 KSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       122 ~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      ..+++|.+++++|. ....+..             ..+..|++|+++++ |+|||+|..+++|++|+.++..+..+... 
T Consensus       139 ~~~~~i~~~~~~g~~~~~~~~~-------------~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~-  203 (286)
T 1q7f_A          139 CKVMRVIIFDQNGNVLHKFGCS-------------KHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQIGGE-  203 (286)
T ss_dssp             TTTTEEEEECTTSCEEEEEECT-------------TTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTCCEEEEESCT-
T ss_pred             CCCCEEEEEcCCCCEEEEeCCC-------------CccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCCCEEEEEccC-
Confidence            99999999999887 3333221             12678999999997 89999999999999999988766555432 


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCCcEEEEcCCC--Ccccc
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG--RLDPP  241 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g--~~~~~  241 (269)
                         +         .+..|.+|++|++|++||++..+  ++...
T Consensus       204 ---g---------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          204 ---G---------ITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             ---T---------TSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             ---C---------ccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence               1         23679999999999999999543  45433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.76  E-value=2e-17  Score=158.89  Aligned_cols=151  Identities=13%  Similarity=0.116  Sum_probs=118.4

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.|||++..+++||++|..+++|.++++    +|.. .++.             ...|+.|.+|++|+ +|.||++
T Consensus       390 ~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~----~G~~~~~l~-------------~~~l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          390 QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL----NGTMRKILI-------------SEDLEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEE-------------CTTCCSEEEEEEETTTTEEEEE
T ss_pred             CCCCcCceEEecccCcEEEEeCCCCcEEEEeC----CCCeEEEEE-------------ECCCCCeeeEEEEcCCCcEEEe
Confidence            46789999997678999999999999999965    4443 2332             12488999999998 5999999


Q ss_pred             eCCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          121 DKSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      |.++ .+|.+++.+|. ......              ..+..|+||++|++++.||++|..+++|++++.+|........
T Consensus       453 D~g~~~~I~r~~~dG~~~~~l~~--------------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~  518 (619)
T 3s94_A          453 DWGEIPKIERAALDGSDRVVLVN--------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE  518 (619)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE
T ss_pred             cCCCCCEEEEEccCCCccEEEEe--------------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence            9875 89999999998 433322              1378999999998779999999999999999998875543322


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLD  239 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~  239 (269)
                      .              .+..|.||+++. ++||++|. +++++
T Consensus       519 ~--------------~l~~P~glav~~-~~ly~tD~~~~~I~  545 (619)
T 3s94_A          519 D--------------KIPHIFGFTLLG-DYVYWTDWQRRSIE  545 (619)
T ss_dssp             C--------------CCCSSCCEEEET-TEEEEECTTSSCEE
T ss_pred             c--------------CCCCcEEEEEEC-CEEEEeecCCCeEE
Confidence            1              346799999995 49999994 44443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.76  E-value=4.5e-17  Score=156.49  Aligned_cols=153  Identities=13%  Similarity=0.083  Sum_probs=119.8

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc--EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV--VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYV  119 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~--~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyV  119 (269)
                      .+..|.+|++++.++.||++|..+++|+++++    +|.  ...+..             ..+..|.|||+|. .++||+
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~----~g~~~~~~v~~-------------~~~~~P~GlAvD~~~~~ly~  100 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF----NKTESVQNVVV-------------SGLLSPDGLACDWLGEKLYW  100 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEEC-------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEc----cCCCceEEEEe-------------CCCCCcCeEEEEecCCEEEE
Confidence            57789999998889999999999999999964    333  233332             2366899999998 677999


Q ss_pred             EeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEEe
Q 024317          120 ADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSKS  196 (269)
Q Consensus       120 aD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~~  196 (269)
                      +|..+++|.+++.+|.  ..+..               ..+..|.+|+++|.+|.||++|.+ +.+|.+++.+|......
T Consensus       101 ~d~~~~~I~v~~~dG~~~~~l~~---------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l  165 (619)
T 3s94_A          101 TDSETNRIEVSNLDGSLRKVLFW---------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII  165 (619)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC---------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EeCCCCEEEEEECCCCCEEEEEe---------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE
Confidence            9999999999999998  44432               127899999999988999999987 67999999998765444


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecC-CcEEEEcC-CCCcccc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRH-TGRLDPP  241 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~-~g~~~~~  241 (269)
                      ...              .+..|.||++|.+ ++||++|. .++++.-
T Consensus       166 ~~~--------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          166 INS--------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             ECS--------------SCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EeC--------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            322              2467999999974 69999994 4555533

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.76  E-value=3.5e-17  Score=157.41  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=119.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD  121 (269)
                      .+..|.|||++...++||++|..+++|.++++    +|+......            ...++.|.+|++|+ +|.||++|
T Consensus       387 ~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~----~G~~~~~l~------------~~~l~~Pr~iavdp~~g~ly~tD  450 (628)
T 4a0p_A          387 LEIQPYDLSIDIYSRYIYWTCEATNVINVTRL----DGRSVGVVL------------KGEQDRPRAVVVNPEKGYMYFTN  450 (628)
T ss_dssp             -CCCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCEEEEEE------------ECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcceEEeeccCCeEEEEcCCCCEEEEEEC----CCCeEEEEE------------eCCCCceeeEEEecCCCeEEEee
Confidence            46689999998767999999999999999954    666554331            12477999999999 89999999


Q ss_pred             CCCC--EEEEEeCCcc-e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          122 KSNH--VIRKITNLGV-T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       122 ~~n~--~I~~~~~~g~-~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      .+++  +|.+++.+|. . .+...               .+..|+||++|++++.||++|..+++|.+++.+|.....+.
T Consensus       451 ~g~~~~~I~r~~~dG~~~~~l~~~---------------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~  515 (628)
T 4a0p_A          451 LQERSPKIERAALDGTEREVLFFS---------------GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE  515 (628)
T ss_dssp             EETTEEEEEEEETTSCSCEEEECS---------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             cCCCCCeEEEEeCCCCCcEEEEec---------------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEE
Confidence            9877  7999999998 4 44321               27899999999988999999999999999999987655443


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ..              .+..|.|||++. ++||++|..
T Consensus       516 ~~--------------~~~~P~glav~~-~~ly~tD~~  538 (628)
T 4a0p_A          516 DS--------------NILQPVGLTVFE-NWLYWIDKQ  538 (628)
T ss_dssp             CS--------------SCSCEEEEEEET-TEEEEEETT
T ss_pred             cC--------------CCCCcEEEEEEC-CEEEEEECC
Confidence            22              347799999996 899999943

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.74  E-value=5.9e-17  Score=155.88  Aligned_cols=149  Identities=16%  Similarity=0.098  Sum_probs=118.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.|||++...++||++|..+++|.++++    +|.. .++.             ...+..|.+|++|+ +|.||++
T Consensus        78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~----dG~~~~~l~-------------~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL----DGQHRQVLV-------------WKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSTTCEEEE-------------CSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEEeCCCEEEEEECCCCEEEEEec----CCCcEEEEE-------------eCCCCCcccEEEccCCCeEEEe
Confidence            34689999998778999999999999999975    3432 2222             12477999999997 7899999


Q ss_pred             eCC-CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKS-NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~-n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      |.+ +.+|.+++.+|.  ..+..                .+..|+||++|++++.||++|..+++|++++.+|.......
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~  204 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVP----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA  204 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEEC----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCCCCEEEEEeCCCCceEEEEC----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee
Confidence            976 789999999998  44432                17899999999988999999999999999999886443221


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP  240 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~  240 (269)
                                     ..+..|.||+++. +++|++|. ++++..
T Consensus       205 ---------------~~l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          205 ---------------DDLPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             ---------------ECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             ---------------ccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence                           0347799999996 89999994 555553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=3.7e-16  Score=132.77  Aligned_cols=151  Identities=13%  Similarity=0.190  Sum_probs=114.0

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      +..|.+|+++ .+|++||++..+++|++++.   ........             ....+..|.+|+++++|+|||+|..
T Consensus       107 ~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~---~~~~~~~~-------------~~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          107 LNYPEGLAVD-TQGAVYVADRGNNRVVKLAA---GSKTQTVL-------------PFTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             CSSEEEEEEC-TTCCEEEEEGGGTEEEEECT---TCCSCEEC-------------CCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             cCCCcceEEC-CCCCEEEEECCCCEEEEEEC---CCceeEee-------------ccccCCCceeEEEeCCCCEEEEECC
Confidence            4679999996 47899999999999999952   22221111             1123568999999999999999999


Q ss_pred             CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          124 NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       124 n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      +++|.+++.++. ......              ..+..|.+|+++++ |+|||++..+++|++++.++.........   
T Consensus       170 ~~~i~~~~~~~~~~~~~~~--------------~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---  231 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPF--------------TDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFT---  231 (270)
T ss_dssp             GTEEEEECTTTCCEEECCC--------------SSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCC---
T ss_pred             CCEEEEEecCCCceEeecc--------------cCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccC---
Confidence            999999998876 332211              12578999999997 79999999999999999887654432111   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDP  240 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~  240 (269)
                                 .+..|.+|+++++|++||++. ++++..
T Consensus       232 -----------~~~~p~~i~~~~~g~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          232 -----------GLNTPLAVAVDSDRTVYVADRGNDRVVK  259 (270)
T ss_dssp             -----------SCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             -----------CCCCceeEEECCCCCEEEEECCCCEEEE
Confidence                       236799999999999999994 455543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.69  E-value=1e-15  Score=134.63  Aligned_cols=149  Identities=13%  Similarity=0.072  Sum_probs=108.3

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~  123 (269)
                      ..|.+|++++.+++|||+|.. +.|+++|.   .++.+..+....         ....++.|++|++|+ +|+|||+|..
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~---~~g~~~~~~~~~---------~~~~~~~p~~i~~d~~~G~l~v~d~~  146 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGS---EGGHATQLATSV---------DGVPFKWLYAVTVDQRTGIVYFTDVS  146 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECT---TCEECEEEESEE---------TTEECSCEEEEEECTTTCCEEEEESC
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeC---CCCEEEEecccC---------CCCcccccceEEEecCCCEEEEECCc
Confidence            479999996447999999986 45888853   345555554220         113577899999999 9999999975


Q ss_pred             C-----------------CEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          124 N-----------------HVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       124 n-----------------~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      +                 ++|.++++++ . ..+..                .+..|+||++++++..|||+|..+++|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------------~~~~p~gia~~~dg~~lyv~d~~~~~I~  210 (322)
T 2fp8_A          147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK----------------ELHVPGGAEVSADSSFVLVAEFLSHQIV  210 (322)
T ss_dssp             SSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE----------------EESCCCEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccccccccceehcccCCCceEEEEeCCCCEEEEecc----------------CCccCcceEECCCCCEEEEEeCCCCeEE
Confidence            3                 6899999864 4 33332                2678999999998567999999999999


Q ss_pred             EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      +|+.++...          +....+. .  +..|.||++|++|+|||++..
T Consensus       211 ~~~~~~~~~----------~~~~~~~-~--~~gP~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          211 KYWLEGPKK----------GTAEVLV-K--IPNPGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEESSSTTT----------TCEEEEE-E--CSSEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCcC----------CccceEE-e--CCCCCCeEECCCCCEEEEecC
Confidence            999876321          1100101 1  122999999999999999954

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=1.4e-16  Score=155.16  Aligned_cols=155  Identities=17%  Similarity=0.052  Sum_probs=116.6

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.|||++..+++|||+|..+++|.++++    +|. ..+++.             ..+..|.+|++|+ .|.||++
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~----dg~~~~~l~~-------------~~~~~P~giavDp~~g~ly~t  513 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR-------------EQGSKPRAIVVDPVHGFMYWT  513 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBS----SSCCEEEECC-------------CSSCCCCCEECCSSSSCCEEC
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEec----CCCceEEEEe-------------CCCCCcceEEEccCCCcEEEc
Confidence            35679999997678999999999999999964    444 333321             2367899999998 6789999


Q ss_pred             eCCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          121 DKSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      |.++ ++|.+++.+|. ......              ..+..|+|||++++++.|||+|..+++|++++.++.....+..
T Consensus       514 d~~~~~~I~~~~~dG~~~~~l~~--------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~  579 (699)
T 1n7d_A          514 DWGTPAKIKKGGLNGVDIYSLVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  579 (699)
T ss_dssp             CCSSSCCEEBCCSSSCCCCEESC--------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC
T ss_pred             ccCCCCeEEEEeCCCCCeeEEEe--------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe
Confidence            9876 89999999887 333221              1278899999999889999999999999999998865444332


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPP  241 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~  241 (269)
                      .    .        ..+..|.||+++. ++||++|. .+++...
T Consensus       580 ~----~--------~~~~~P~glavd~-~~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          580 D----E--------KRLAHPFSLAVFE-DKVFWTDIINEAIFSA  610 (699)
T ss_dssp             C----S--------SSCSSCCCCEEET-TEEEEECSTTTCEEEE
T ss_pred             c----C--------CcCCCceEeEEEC-CEEEEEeCCCCeEEEE
Confidence            1    0        1346799999996 48999994 4566543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=2.6e-15  Score=127.47  Aligned_cols=153  Identities=16%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..|.+|+++ .+|++||++. +++|+++|.    ++.......            ...+..|.+|+++++|+|||+|.
T Consensus        65 ~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~----~~~~~~~~~------------~~~~~~p~~i~~~~~g~l~v~~~  126 (270)
T 1rwi_B           65 GLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAA----GSNNQTVLP------------FDGLNYPEGLAVDTQGAVYVADR  126 (270)
T ss_dssp             SCCSCCCEEEC-TTCCEEEEET-TTEEEEECT----TCSCCEECC------------CCSCSSEEEEEECTTCCEEEEEG
T ss_pred             CcCCcceeEEC-CCCCEEEEcC-CCEEEEEeC----CCceEeeee------------cCCcCCCcceEECCCCCEEEEEC
Confidence            34689999996 4788999999 889999953    443222211            12356899999999999999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .+++|.+++.... ......              ..+..|++|+++++ ++|||++..+++|++++.++.........  
T Consensus       127 ~~~~i~~~~~~~~~~~~~~~--------------~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--  189 (270)
T 1rwi_B          127 GNNRVVKLAAGSKTQTVLPF--------------TGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLPFT--  189 (270)
T ss_dssp             GGTEEEEECTTCCSCEECCC--------------CSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECCCS--
T ss_pred             CCCEEEEEECCCceeEeecc--------------ccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeeccc--
Confidence            9999999975444 332211              12568999999987 78999999999999999888765432211  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                                  .+..|.+|++|++|++||++. .+++....
T Consensus       190 ------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          190 ------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             ------------SCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             ------------CCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence                        236699999999999999995 45555443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=2.9e-14  Score=122.08  Aligned_cols=153  Identities=11%  Similarity=0.092  Sum_probs=118.0

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      ...|.+++++ .++++||++..+++|++++    .+|++..+.-.            .....|.+|++|++|+|||++..
T Consensus       103 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~----~~g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A          103 DSGPYGITEG-LNGDIWFTQLNGDRIGKLT----ADGTIYEYDLP------------NKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             TCCEEEEEEC-STTCEEEEETTTTEEEEEC----TTSCEEEEECS------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCCccceEC-CCCCEEEEccCCCeEEEEC----CCCCEEEccCC------------CCCCCceeEEECCCCCEEEEecC
Confidence            4679999996 5899999999899999995    45777655311            13458999999999999999999


Q ss_pred             CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          124 NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       124 n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      +++|.++++++. ..+...              ..+..|.+|+++++ ++|||++..+++|.+++..+.........   
T Consensus       166 ~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---  227 (300)
T 2qc5_A          166 NNSIGRITNTGKLEEYPLP--------------TNAAAPVGITSGND-GALWFVEIMGNKIGRITTTGEISEYDIPT---  227 (300)
T ss_dssp             TTEEEEECTTCCEEEEECS--------------STTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSS---
T ss_pred             CCeEEEECCCCcEEEeeCC--------------CCCCCcceEEECCC-CCEEEEccCCCEEEEEcCCCcEEEEECCC---
Confidence            999999999877 444321              12568999999986 89999999999999999866554432111   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEcCC-CCccccc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-GRLDPPL  242 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-g~~~~~~  242 (269)
                                 ....|.+|++|++|++||++.. +++....
T Consensus       228 -----------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          228 -----------PNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             -----------TTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             -----------CCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence                       2356999999999999999953 5655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.65  E-value=1.7e-16  Score=154.49  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=114.5

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc-CCCCEEEEe
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD-MKGNIYVAD  121 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd-~~G~lyVaD  121 (269)
                      .+..|.+|++++.++.||++|..+++|+++++.    +..   .+...     .......+..|.+|++| ..++|||+|
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~----g~~---~~~~~-----~~~i~~~~~~P~glavD~~~g~LY~tD  471 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLD----RAH---GVSSY-----DTVISRDIQAPDGLAVDWIHSNIYWTD  471 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESC----CCC---C-CCC-----CCBCCSCC--CCCEECCCSSSBCEECC
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecC----CCC---CCcce-----EEEEeCCCCCcceEEEEeeCCcEEEEe
Confidence            467899999987789999999999999999753    210   00000     00112346789999999 478899999


Q ss_pred             CCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEeccc
Q 024317          122 KSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       122 ~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~~~  199 (269)
                      ..+++|.+++.+|. ......              ..+..|++|++++.++.||++|.++ ++|+++++++.....+...
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~--------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~  537 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFR--------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  537 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECC--------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred             ccCCeEEEEecCCCceEEEEe--------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence            99999999999987 333221              1267899999999879999999876 8999999887644332211


Q ss_pred             CccCCCcccceeeeeccceeeEEEecC-CcEEEEcC-CCCcc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFV-ARPYIIRH-TGRLD  239 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~-g~lyVad~-~g~~~  239 (269)
                                    .+..|.|||+|++ ++||++|. .++|.
T Consensus       538 --------------~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          538 --------------NIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             --------------SCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             --------------CCCCccEEEEeccCCEEEEEecCCCeEE
Confidence                          3467999999975 69999994 44444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=2e-14  Score=123.08  Aligned_cols=150  Identities=9%  Similarity=0.090  Sum_probs=116.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....|.+++++ .++++||++..+++|++++    .++++..+...            ..+..|.+|++|++|+|||++.
T Consensus       144 ~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~----~~g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          144 KGSYPAFITLG-SDNALWFTENQNNSIGRIT----NTGKLEEYPLP------------TNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             TTCCEEEEEEC-TTSSEEEEETTTTEEEEEC----TTCCEEEEECS------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCceeEEEC-CCCCEEEEecCCCeEEEEC----CCCcEEEeeCC------------CCCCCcceEEECCCCCEEEEcc
Confidence            35689999996 5788999999999999995    46776654311            2356899999999999999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .+++|.+++++|. ..+...              ..+..|.+|+++++ |+|||++..+++|.++++.+.........  
T Consensus       207 ~~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--  269 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDIP--------------TPNARPHAITAGKN-SEIWFTEWGANQIGRITNDNTIQEYQLQT--  269 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECS--------------STTCCEEEEEECST-TCEEEEETTTTEEEEECTTSCEEEEECCS--
T ss_pred             CCCEEEEEcCCCcEEEEECC--------------CCCCCceEEEECCC-CCEEEeccCCCeEEEECCCCcEEEEECCc--
Confidence            9999999999877 444221              12568999999987 88999999989999999966544321111  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                                  ....|.+|++|++|++||++.+ ++.
T Consensus       270 ------------~~~~~~~i~~~~~g~l~v~~~~-~i~  294 (300)
T 2qc5_A          270 ------------ENAEPHGITFGKDGSVWFALKC-KIG  294 (300)
T ss_dssp             ------------TTCCCCCEEECTTSCEEEECSS-EEE
T ss_pred             ------------cCCccceeEeCCCCCEEEEccC-ceE
Confidence                        1255899999999999999973 443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.60  E-value=1.5e-13  Score=117.51  Aligned_cols=154  Identities=11%  Similarity=0.098  Sum_probs=116.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....|.+|+++ .++++||++..++.|+++|    .++++..+...            .....|.+|++|++|++||++.
T Consensus        97 ~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d----~~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           97 PDSAPYGITEG-PNGDIWFTEMNGNRIGRIT----DDGKIREYELP------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TTCCEEEEEEC-TTSCEEEEETTTTEEEEEC----TTCCEEEEECS------------STTCCEEEEEECTTSCEEEEET
T ss_pred             cCCCceeeEEC-CCCCEEEEecCCceEEEEC----CCCCEEEecCC------------CCCCCCceEEEcCCCCEEEEeC
Confidence            34579999996 5799999999899999995    46766655321            1245899999999999999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .++.|.+++++|. ..+...              ..+..|.+|+++++ ++|||++..+++|++++..+.... ....  
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~-~~~~--  221 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIP--------------TPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITE-FKIP--  221 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS--------------STTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEE-EECS--
T ss_pred             CCCEEEEEcCCCcEEEeeCC--------------CCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcEEE-EECC--
Confidence            8899999999776 443221              12567999999987 889999998899999999555332 2111  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                        .         ....|.+|++|++|++||++. .+++...+
T Consensus       222 --~---------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          222 --T---------PNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             --S---------TTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             --C---------CCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence              0         225699999999999999984 45555444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=2.8e-13  Score=117.03  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=113.5

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC-
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK-  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~-  122 (269)
                      ...|.+|+++ .+|++||++...++|+++|.   .+|++..+....         ....++.|+++++|++|++||+|. 
T Consensus        68 ~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~---~~g~~~~~~~~~---------~~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           68 SHHQNGHCLN-KQGHLIACSHGLRRLERQRE---PGGEWESIADSF---------EGKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             CSSEEEEEEC-TTCCEEEEETTTTEEEEECS---TTCCEEEEECEE---------TTEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCCcceeeEC-CCCcEEEEecCCCeEEEEcC---CCCcEEEEeecc---------CCCCCCCCCCEEECCCCCEEEECCc
Confidence            3469999996 58899999999999999963   377777664220         113467899999999999999985 


Q ss_pred             ----------------CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEE
Q 024317          123 ----------------SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ  185 (269)
Q Consensus       123 ----------------~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~  185 (269)
                                      ..++|.+++++|. ..+...                +..|++|+++++ +.++|+|..+++|++
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~----------------~~~~~gi~~s~d-g~~lv~~~~~~~i~~  197 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD----------------RVKPNGLAFLPS-GNLLVSDTGDNATHR  197 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC----------------CSSEEEEEECTT-SCEEEEETTTTEEEE
T ss_pred             cccccccccccccccCCCcEEEEECCCCCEEEeecC----------------CCCCccEEECCC-CCEEEEeCCCCeEEE
Confidence                            2469999998877 554332                567999999998 554599999999999


Q ss_pred             EECC--CCe---EEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          186 INLK--PED---CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       186 ~~~~--~~~---~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                      ++.+  +..   ...+ ..              ....|.+|++|++|++||++ .+++....
T Consensus       198 ~~~~~~g~~~~~~~~~-~~--------------~~~~p~~i~~d~~G~l~v~~-~~~v~~~~  243 (296)
T 3e5z_A          198 YCLNARGETEYQGVHF-TV--------------EPGKTDGLRVDAGGLIWASA-GDGVHVLT  243 (296)
T ss_dssp             EEECSSSCEEEEEEEE-CC--------------SSSCCCSEEEBTTSCEEEEE-TTEEEEEC
T ss_pred             EEECCCCcCcCCCeEe-eC--------------CCCCCCeEEECCCCCEEEEc-CCeEEEEC
Confidence            9975  222   1111 11              12568999999999999999 55555433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=2.8e-13  Score=115.88  Aligned_cols=150  Identities=9%  Similarity=0.044  Sum_probs=114.4

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      ...|.+++++ .+|++||++..++.|+++|    .+|++..+...            ..+..|.+|++|++|+|||++..
T Consensus       140 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~----~~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          140 GSYPSFITLG-SDNALWFTENQNNAIGRIT----ESGDITEFKIP------------TPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEEC----TTCCEEEEECS------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCCceEEEc-CCCCEEEEeCCCCEEEEEc----CCCcEEEeeCC------------CCCCcceeEEECCCCCEEEEccC
Confidence            4579999996 5789999999999999995    46777665311            13568999999999999999998


Q ss_pred             CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          124 NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       124 n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .++|.++++++. ..+...              .....|.+|+++++ |+|||++..+++|.++++++... .....   
T Consensus       203 ~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~~~-~~~~~---  263 (299)
T 2z2n_A          203 GNKIGRITTSGEITEFKIP--------------TPNARPHAITAGAG-IDLWFTEWGANKIGRLTSNNIIE-EYPIQ---  263 (299)
T ss_dssp             TTEEEEECTTCCEEEEECS--------------STTCCEEEEEECST-TCEEEEETTTTEEEEEETTTEEE-EEECS---
T ss_pred             CceEEEECCCCcEEEEECC--------------CCCCCceeEEECCC-CCEEEeccCCceEEEECCCCceE-EEeCC---
Confidence            999999999776 443221              12567999999987 88999999889999999865332 22111   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDP  240 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~  240 (269)
                       .         ....|.++++ ++|++|+++..+.+..
T Consensus       264 -~---------~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          264 -I---------KSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             -S---------SSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             -C---------CCCccceEEe-cCCCEEEEecCCcEEE
Confidence             0         1255899999 8999999986665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.58  E-value=4.1e-14  Score=126.82  Aligned_cols=177  Identities=13%  Similarity=0.141  Sum_probs=115.7

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi  109 (269)
                      +...++.+..+   +..|.+|++++ +|++||++.. ++|++++     +|+...+....  -      .......|.||
T Consensus        19 ~~~~~~~va~~---l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-----~g~~~~~~~~~--v------~~~g~~~p~gi   80 (352)
T 2ism_A           19 QGLRVEEVVGG---LEVPWALAFLP-DGGMLIAERP-GRIRLFR-----EGRLSTYAELS--V------YHRGESGLLGL   80 (352)
T ss_dssp             -CCCEEEEECC---CSCEEEEEECT-TSCEEEEETT-TEEEEEE-----TTEEEEEEECC--C------CCSTTCSEEEE
T ss_pred             CCcEEEEEECC---CCCceEEEEcC-CCeEEEEeCC-CeEEEEE-----CCCccEeecce--E------eecCCCCceeE
Confidence            34567777653   67999999964 7899999986 8999994     55555444221  0      11235689999


Q ss_pred             EEcCC----CCEEEEeCCC-----CEEEEEeCCc----c-eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEE
Q 024317          110 AVDMK----GNIYVADKSN-----HVIRKITNLG----V-TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALL  174 (269)
Q Consensus       110 avd~~----G~lyVaD~~n-----~~I~~~~~~g----~-~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly  174 (269)
                      +++++    +.|||++..+     ++|.+++.++    . ..+. +....          ......|.+|+++++ |.||
T Consensus        81 a~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~----------~~~~h~~~~l~~~pd-G~Ly  149 (352)
T 2ism_A           81 ALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR----------PHGLHSGGRIAFGPD-GMLY  149 (352)
T ss_dssp             EECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC----------TTCCCCCCCEEECTT-SCEE
T ss_pred             EECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC----------CCCCcCCceEEECCC-CCEE
Confidence            99997    7899999864     7999998654    1 2222 11100          122567899999998 8999


Q ss_pred             EEECC-------------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcEEEEcCCCC
Q 024317          175 ISDHG-------------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRHTGR  237 (269)
Q Consensus       175 VaD~~-------------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~~g~  237 (269)
                      |++..             .++|+++++++....-....+........|..  .+..|.||++|+ +|+||++|+...
T Consensus       150 v~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G~rnp~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          150 VTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL--GHRNPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             EECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE--CCSEECCCEECTTTCCEEEEEECC-
T ss_pred             EEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE--cCCCcccEEEECCCCCEEEEEcCCC
Confidence            99742             36899999887421000000000012223333  357799999999 789999996433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.8e-13  Score=119.28  Aligned_cols=150  Identities=14%  Similarity=0.150  Sum_probs=110.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC-
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK-  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~-  122 (269)
                      ...|.+++++ .+|++|+++...++|.+++    .+|++..+....         ....++.|++++++++|+|||+|. 
T Consensus        85 ~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~----~~g~~~~~~~~~---------~~~~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           85 TAFTNGNAVD-AQQRLVHCEHGRRAITRSD----ADGQAHLLVGRY---------AGKRLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             CSCEEEEEEC-TTSCEEEEETTTTEEEEEC----TTSCEEEEECEE---------TTEECSCCCCEEECTTSCEEEECCS
T ss_pred             CCccceeeEC-CCCCEEEEECCCCEEEEEC----CCCCEEEEEecc---------CCCccCCCCCEEECCCCCEEEeCcC
Confidence            3468999996 5899999999999999995    457777665321         123578999999999999999984 


Q ss_pred             ----------------CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC----
Q 024317          123 ----------------SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN----  180 (269)
Q Consensus       123 ----------------~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n----  180 (269)
                                      ..+.|.+++++ |. ..+. .                +..|+++++++++..|||+|..+    
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----------------~~~p~gl~~spdg~~lyv~~~~~~~~~  213 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----------------LDHPNGLAFSPDEQTLYVSQTPEQGHG  213 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----------------ESSEEEEEECTTSSEEEEEECCC---C
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----------------CCCCcceEEcCCCCEEEEEecCCcCCC
Confidence                            13689999984 55 4443 1                56899999999966799999974    


Q ss_pred             -CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          181 -QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       181 -~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                       ++|++++.++..+......  ..         .....|.||++|++|+|||+...
T Consensus       214 ~~~i~~~~~~~~~l~~~~~~--~~---------~~~~~pdgi~~d~~G~lwv~~~~  258 (305)
T 3dr2_A          214 SVEITAFAWRDGALHDRRHF--AS---------VPDGLPDGFCVDRGGWLWSSSGT  258 (305)
T ss_dssp             CCEEEEEEEETTEEEEEEEE--EC---------CSSSCCCSEEECTTSCEEECCSS
T ss_pred             CCEEEEEEecCCCccCCeEE--EE---------CCCCCCCeEEECCCCCEEEecCC
Confidence             7999998776542111000  00         01245899999999999999844

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.55  E-value=5.5e-13  Score=116.55  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             CCcceEEEecCCCeEEEEeCCC--CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSR--SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~--~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ..|.+|+++ .+|++||+|..+  .+|++++   ..+|++..+....            ....|.++++...+.+||+|.
T Consensus        72 ~~p~gia~~-~dG~l~vad~~~~~~~v~~~d---~~~g~~~~~~~~~------------~~~~~~g~~~~~~~~~~v~d~  135 (306)
T 2p4o_A           72 GKVSGLAFT-SNGDLVATGWNADSIPVVSLV---KSDGTVETLLTLP------------DAIFLNGITPLSDTQYLTADS  135 (306)
T ss_dssp             SEEEEEEEC-TTSCEEEEEECTTSCEEEEEE---CTTSCEEEEEECT------------TCSCEEEEEESSSSEEEEEET
T ss_pred             CCceeEEEc-CCCcEEEEeccCCcceEEEEc---CCCCeEEEEEeCC------------CccccCcccccCCCcEEEEEC
Confidence            369999996 478899999764  3588886   3678877665321            134688999888888999999


Q ss_pred             CCCEEEEEeCCcc--eEE--ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          123 SNHVIRKITNLGV--TTI--AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       123 ~n~~I~~~~~~g~--~~~--~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      .+++|+++++++.  ..+  .+.....       .....+..|+||  +++++.|||+|+.+++|++|+.++...     
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~~~~~-------~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-----  201 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPMLARS-------NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-----  201 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGGGSCS-------STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-----
T ss_pred             CCCeEEEEeCCCCcEeEEEECCccccc-------cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-----
Confidence            8999999998642  222  2211000       011347789999  566579999999999999999875210     


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                      .    +....+.   .+..|.||++|++|++||++. .+++....
T Consensus       202 ~----~~~~~~~---~~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          202 P----GEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             B----CCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             C----CccEEEe---ccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            0    1111111   235799999999999999994 45555444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.54  E-value=1.7e-13  Score=120.48  Aligned_cols=150  Identities=11%  Similarity=-0.034  Sum_probs=109.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCC-----------------CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSR-----------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK  105 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~-----------------~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~  105 (269)
                      .+..|.+|++++.+|+|||+|..+                 ++|+++|.   .++++..+.              ..+..
T Consensus       124 ~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~~~~~--------------~~~~~  186 (322)
T 2fp8_A          124 PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---STKETTLLL--------------KELHV  186 (322)
T ss_dssp             ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET---TTTEEEEEE--------------EEESC
T ss_pred             cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC---CCCEEEEec--------------cCCcc
Confidence            456899999963278999999753                 67888863   345555443              23678


Q ss_pred             CceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317          106 PKSFAVDMKGN-IYVADKSNHVIRKITNLGV-----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       106 P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      |++|+++++|+ |||+|..+++|++++.++.     ..+..                 +..|.+|+++++ |+|||++..
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------~~gP~gi~~d~~-G~l~va~~~  248 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------IPNPGNIKRNAD-GHFWVSSSE  248 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------CSSEEEEEECTT-SCEEEEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------CCCCCCeEECCC-CCEEEEecC
Confidence            99999999987 9999999999999997752     22221                 112999999997 899999976


Q ss_pred             ----------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcc
Q 024317          180 ----------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLD  239 (269)
Q Consensus       180 ----------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~  239 (269)
                                +++|.+|++++..+..+..+.   +.        .+..|.+++.+ +|+|||++. .+++.
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~---g~--------~~~~~~~~~~~-~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEFGNILEVIPLPP---PF--------AGEHFEQIQEH-DGLLYIGTLFHGSVG  307 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTTSCEEEEEECCT---TT--------TTSCCCEEEEE-TTEEEEECSSCSEEE
T ss_pred             cccccccCCCccEEEEECCCCCEEEEEECCC---CC--------ccccceEEEEe-CCEEEEeecCCCceE
Confidence                      578999999988776654331   11        13567788775 789999984 34443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.54  E-value=5.4e-13  Score=119.69  Aligned_cols=177  Identities=14%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             ccceecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCccccc
Q 024317           23 SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSAR  102 (269)
Q Consensus        23 ~~~~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~  102 (269)
                      .++...+.++.++.+..+   +..|.+|++++ +|+|||++.. ++|+++    +.+|+ ..+.....  +      ...
T Consensus        10 ~~~~~~~~~~~~~~va~~---l~~P~~ia~~p-dG~l~V~e~~-g~I~~~----d~~G~-~~~~~~~v--~------~~g   71 (354)
T 3a9g_A           10 RKGPSEEWKFKISEVASD---LEVPWSIAPLG-GGRYLVTERP-GRLVLI----SPSGK-KLVASFDV--A------NVG   71 (354)
T ss_dssp             ------CCCEEEEEEECS---CSCEEEEEEEE-TTEEEEEETT-TEEEEE----CSSCE-EEEEECCC--C------CST
T ss_pred             hcCCCCCCCeEEEEEeCC---CCCCeEEEEcC-CCeEEEEeCC-CEEEEE----eCCCc-eEeeccce--e------ecC
Confidence            334555678888888753   67999999975 7899999987 999999    45676 44432210  0      112


Q ss_pred             CCCCceEEEcCC----CCEEEEeCC---C----CEEEEEeCCcc-------eEE-ecCCCCCCCCCCCccccccccCceE
Q 024317          103 FDKPKSFAVDMK----GNIYVADKS---N----HVIRKITNLGV-------TTI-AGGGSKKEGRADGPAQNASFSNDFE  163 (269)
Q Consensus       103 ~~~P~giavd~~----G~lyVaD~~---n----~~I~~~~~~g~-------~~~-~g~~~~~~~~~~~~~~~~~l~~P~g  163 (269)
                      ...|.||+++++    |.|||++..   +    ++|.+++.++.       ..+ .+..            ......|++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~  139 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGR  139 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCC
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCce
Confidence            457999999986    889999974   3    78999986542       112 1111            012567899


Q ss_pred             EEEeCCCCEEEEEECC-------------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcE
Q 024317          164 LTFVPHICALLISDHG-------------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARP  229 (269)
Q Consensus       164 ia~~~~~g~LyVaD~~-------------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~l  229 (269)
                      |+++++ |.|||++..             .++|+++++++..-    .. .+......|..  .+..|.||++|+ +|+|
T Consensus       140 l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p----~~-npf~~~~i~a~--G~rnp~Gla~d~~~g~l  211 (354)
T 3a9g_A          140 IRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP----AD-NPFPNSPIWSY--GHRNPQGIDWHRASGVM  211 (354)
T ss_dssp             EEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC----TT-SSSTTCCEEEE--CCSCCCEEEECTTTCCE
T ss_pred             EEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC----CC-CCCCCCcEEEE--ccCCcceEEEeCCCCCE
Confidence            999998 899999642             36899999887521    00 01111223332  357799999999 8999


Q ss_pred             EEEcCCCC
Q 024317          230 YIIRHTGR  237 (269)
Q Consensus       230 yVad~~g~  237 (269)
                      |++|+...
T Consensus       212 ~v~d~g~~  219 (354)
T 3a9g_A          212 VATEHGPV  219 (354)
T ss_dssp             EEEECCSS
T ss_pred             EEEecCCC
Confidence            99997544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=7.1e-13  Score=114.45  Aligned_cols=166  Identities=10%  Similarity=0.063  Sum_probs=119.5

Q ss_pred             ecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC
Q 024317           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (269)
Q Consensus        27 ~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P  106 (269)
                      ++..+..++.+..   .+..|.++++++.++.+|+++..+++|++++.   ..+ +..+..              ....|
T Consensus        13 ~~~~~~~~~~l~~---~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~---~~~-~~~~~~--------------~~~~~   71 (296)
T 3e5z_A           13 LFPAGAEARRLAD---GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSD---DGQ-LSPEMH--------------PSHHQ   71 (296)
T ss_dssp             GSCTTCCCEEEEC---CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEET---TSC-EEEEES--------------SCSSE
T ss_pred             hcCCCCcEEEEec---CCccccCCeEeCCCCEEEEEeCCCCEEEEEEC---CCC-eEEEEC--------------CCCCc
Confidence            4455666666654   35689999998644459999999999999974   233 554432              12478


Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC------
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH------  178 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~------  178 (269)
                      .+|+++++|+|||++..+++|.++++ +|. ..+.....           ...+..|++|+++++ |+|||+|.      
T Consensus        72 ~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           72 NGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE-----------GKKLNSPNDVCLAPD-GSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------TEECCCCCCEEECTT-SCEEEEECSHHHHC
T ss_pred             ceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------CCCCCCCCCEEECCC-CCEEEECCcccccc
Confidence            99999999999999998899999998 777 54432210           123678999999997 89999986      


Q ss_pred             -----------CCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcccc
Q 024317          179 -----------GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPP  241 (269)
Q Consensus       179 -----------~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~  241 (269)
                                 ..++|++++.++.......                .+..|.|++++++|++++++. .++++..
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~----------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~  198 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPDGTLSAPIR----------------DRVKPNGLAFLPSGNLLVSDTGDNATHRY  198 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTTSCEEEEEC----------------CCSSEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ccccccccccCCCcEEEEECCCCCEEEeec----------------CCCCCccEEECCCCCEEEEeCCCCeEEEE
Confidence                       2468999988755433221                235689999999998778884 4555543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=4.6e-13  Score=116.76  Aligned_cols=156  Identities=12%  Similarity=0.089  Sum_probs=114.9

Q ss_pred             CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      +..++.+..   .+..++|+++++.++.||++|..+++|++++    .+|.+..+...              -..|.+++
T Consensus        34 ~~~~~~l~~---~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~----~~g~~~~~~~~--------------~~~~~gl~   92 (305)
T 3dr2_A           34 DARLLTLYD---QATWSEGPAWWEAQRTLVWSDLVGRRVLGWR----EDGTVDVLLDA--------------TAFTNGNA   92 (305)
T ss_dssp             TCCCEEEEC---CCSSEEEEEEEGGGTEEEEEETTTTEEEEEE----TTSCEEEEEES--------------CSCEEEEE
T ss_pred             CCceEEEec---CCcCccCCeEeCCCCEEEEEECCCCEEEEEe----CCCCEEEEeCC--------------CCccceee
Confidence            344555544   3458999999875556999999999999995    46666655422              24689999


Q ss_pred             EcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC----------
Q 024317          111 VDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG----------  179 (269)
Q Consensus       111 vd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~----------  179 (269)
                      +|++|+||+++..+++|.+++++|. ..+.....           ...++.|++|+++++ |+||++|..          
T Consensus        93 ~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~-----------~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           93 VDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYA-----------GKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEECEET-----------TEECSCCCCEEECTT-SCEEEECCSGGGSCGGGSC
T ss_pred             ECCCCCEEEEECCCCEEEEECCCCCEEEEEeccC-----------CCccCCCCCEEECCC-CCEEEeCcCCCcccccccc
Confidence            9999999999998899999999887 55543211           123678999999997 899999851          


Q ss_pred             -------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcCC
Q 024317          180 -------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHT  235 (269)
Q Consensus       180 -------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~  235 (269)
                             .+.|+++++.++......                .+..|.|++++++|+ |||++..
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~----------------~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA----------------DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE----------------EESSEEEEEECTTSSEEEEEECC
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe----------------cCCCCcceEEcCCCCEEEEEecC
Confidence                   357888887543222211                125689999999995 9999964

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=5.8e-13  Score=115.75  Aligned_cols=154  Identities=12%  Similarity=0.038  Sum_probs=110.5

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC--
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK--  122 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~--  122 (269)
                      ..|.+++++ .+|++||+.  .+.|+++|.   .++++..+....         ....++.|+++++|++|++||++.  
T Consensus        54 ~~~~~i~~~-~dG~l~v~~--~~~l~~~d~---~~g~~~~~~~~~---------~~~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           54 APVSSVALR-QSGGYVATI--GTKFCALNW---KEQSAVVLATVD---------NDKKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             SCEEEEEEB-TTSSEEEEE--TTEEEEEET---TTTEEEEEEECC---------TTCSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             CceEEEEEC-CCCCEEEEE--CCeEEEEEC---CCCcEEEEEecC---------CCCCCCCCCCEEECCCCCEEEecCCc
Confidence            468999996 478899997  578999974   467776654321         012356799999999999999984  


Q ss_pred             ---------CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC--C
Q 024317          123 ---------SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK--P  190 (269)
Q Consensus       123 ---------~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~--~  190 (269)
                               ..++|++++++|. ..+..                .+..|++|++++++..|||+|+.+++|++++.+  .
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~  182 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPDHHVKKYFD----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT  182 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTTSCEEEEEE----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred             ccccccccCCCcEEEEEECCCCEEEEee----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence                     3458999999887 44432                267799999999966899999999999999863  2


Q ss_pred             CeEE---EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcccc
Q 024317          191 EDCS---KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPP  241 (269)
Q Consensus       191 ~~~~---~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~  241 (269)
                      +...   .+...  . .         ....|.|+++|++|+|||++. .+++...
T Consensus       183 G~~~~~~~~~~~--~-~---------~~~~p~g~~~d~~G~lwva~~~~~~v~~~  225 (297)
T 3g4e_A          183 GQISNRRSVYKL--E-K---------EEQIPDGMCIDAEGKLWVACYNGGRVIRL  225 (297)
T ss_dssp             CCEEEEEEEEEC--C-G---------GGCEEEEEEEBTTSCEEEEEETTTEEEEE
T ss_pred             CcccCcEEEEEC--C-C---------CCCCCCeeEECCCCCEEEEEcCCCEEEEE
Confidence            2221   11111  0 0         124699999999999999995 4445433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.51  E-value=9.7e-13  Score=114.99  Aligned_cols=155  Identities=12%  Similarity=0.021  Sum_probs=107.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..|+++++++ +++|||+|..+++|+++|    .++.+..+...+              ..|.+|+++++|+|||+|..+
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d----~~g~~~~~~~~~--------------~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSIT----PDGNQQIHATVE--------------GKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEEC----TTCCEEEEEECS--------------SEEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEEC----CCCceEEEEeCC--------------CCceeEEEcCCCcEEEEeccC
Confidence            5799999974 789999999999999994    566666554321              269999999999999999764


Q ss_pred             --CEEEEEe-CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe--EEEecc
Q 024317          125 --HVIRKIT-NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED--CSKSSQ  198 (269)
Q Consensus       125 --~~I~~~~-~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~--~~~~~~  198 (269)
                        .+|.+++ ++|. ..++...              ....|+|+++.+. +.+||+|..+++|++++..+..  +.....
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~--------------~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~  157 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLP--------------DAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHP  157 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECT--------------TCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred             CcceEEEEcCCCCeEEEEEeCC--------------CccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence              3588887 5676 5555431              1345789987664 8999999989999999987642  221111


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcccc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLDPP  241 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~~~  241 (269)
                      .. ....    .. ..+..|.||  +++| .+||+|. +++++..
T Consensus       158 ~~-~~~~----~~-~~~~~pngi--s~dg~~lyv~d~~~~~I~~~  194 (306)
T 2p4o_A          158 ML-ARSN----SE-SVFPAANGL--KRFGNFLYVSNTEKMLLLRI  194 (306)
T ss_dssp             GG-SCSS----TT-CCSCSEEEE--EEETTEEEEEETTTTEEEEE
T ss_pred             cc-cccc----cc-CCCCcCCCc--CcCCCEEEEEeCCCCEEEEE
Confidence            10 0000    00 134679999  4455 8999995 4455433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=2.9e-12  Score=113.71  Aligned_cols=170  Identities=11%  Similarity=0.089  Sum_probs=111.5

Q ss_pred             CCCcceEEEecCCCeEEEEeC---CCCEEEEEecCCCCCccEEEEEcC--Cc-c---cCC-CCCcc-----c----ccCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDS---SRSAFYTLSFPLSEESVVKRLAGD--GV-Q---GYS-DGEPG-----S----ARFD  104 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~---~~~~I~~~dl~~~~~g~~~~~~g~--g~-~---g~~-dg~~~-----~----~~~~  104 (269)
                      ...|.+|++++.++.+||+|.   .++.|+++|+   .+|+...+...  .. +   .+. +|...     .    ....
T Consensus       119 ~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~---~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  195 (343)
T 2qe8_A          119 NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL---QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL  195 (343)
T ss_dssp             TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET---TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC
T ss_pred             ccccceEEEecCCCEEEEEcCccCCCCeEEEEEC---CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec
Confidence            357899999766789999999   8899999985   35666655422  00 0   000 11100     0    0124


Q ss_pred             CCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          105 KPKSFAVDMKGN-IYVADKSNHVIRKITNLGV-T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       105 ~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      .|+||+++++|. ||+++...+++++++.+-. . .+.......     ..........|.||++|++ |+|||+|..++
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~g~pdgia~d~~-G~l~va~~~~~  269 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS-----KIERYSEKPICDGISIDKD-HNIYVGDLAHS  269 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT-----TCEEEEECCSCSCEEECTT-CCEEEEEGGGT
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc-----ceEecccCCCCceEEECCC-CCEEEEccCCC
Confidence            689999999996 9999998889999974210 0 000000000     0000011236999999997 89999999999


Q ss_pred             eEEEEEC-CCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          182 LIRQINL-KPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       182 ~I~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      +|.+|++ ++........+              .+..|.+++++++|++||++...
T Consensus       270 ~V~~~d~~~G~~~~~~~~~--------------~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          270 AIGVITSADRAYKLLVTDE--------------KLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEEEEETTTTEEEEEEECG--------------GGSCEEEEEECTTSCEEEEECCG
T ss_pred             eEEEEECCCCCEEEEEECC--------------ceecCCeeEECCCCcEEEEeCcc
Confidence            9999999 66543332211              24679999999999999999643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.50  E-value=4.8e-13  Score=119.93  Aligned_cols=150  Identities=11%  Similarity=0.075  Sum_probs=104.2

Q ss_pred             CcceEEEecC-CC--eEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE
Q 024317           46 NPHSVIDRPG-SS--DLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~-~g--~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      +|+||.+.++ ++  +|||++..  +.+|..+++  +.++...+.+..-         ....++.|++++++++|.+||+
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~--d~~~~~~~~~~~~---------~g~~~~~pND~~v~~~G~fyvt  181 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKF--QEEEKSLLHLKTI---------RHKLLPSVNDIVAVGPEHFYAT  181 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEE--ETTTTEEEEEEEE---------CCTTCSSEEEEEEEETTEEEEE
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEE--ECCCCEEEEEecc---------ccCCCCCCceEEEeCCCCEEec
Confidence            8999998542 33  69999986  566655554  3444444443220         1236899999999999999998


Q ss_pred             eC-----------------CCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          121 DK-----------------SNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       121 D~-----------------~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      +.                 ..++|.++++.....++.                .+..||||+++|++..|||+|+..++|
T Consensus       182 ~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~----------------~l~~pNGia~spDg~~lYvadt~~~~I  245 (355)
T 3sre_A          182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE----------------GFDFANGINISPDGKYVYIAELLAHKI  245 (355)
T ss_dssp             ESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE----------------EESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CCcEeCCcccccchhhccCCccEEEEEECCeEEEeec----------------CCcccCcceECCCCCEEEEEeCCCCeE
Confidence            75                 246788888742244432                278899999999977999999999999


Q ss_pred             EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcEEEEcC
Q 024317          184 RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRH  234 (269)
Q Consensus       184 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~  234 (269)
                      ++|+.+..........         +.   ....|.|+++|. +|++||+.+
T Consensus       246 ~~~~~~~~g~l~~~~~---------~~---~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          246 HVYEKHANWTLTPLRV---------LS---FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEECTTSCEEEEEE---------EE---CSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCcEecCEE---------Ee---CCCCCceEEEeCCCCcEEEEec
Confidence            9999764321111000         00   125699999999 599999774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=5.7e-12  Score=111.84  Aligned_cols=170  Identities=12%  Similarity=0.064  Sum_probs=111.7

Q ss_pred             CCcceEEEecCCCeEEEEeCC--C--CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSS--R--SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~--~--~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      ..|.+|+++ .+|++||+...  .  .+|++++     +|++..+....       ......+..|.+|++|++|+|||+
T Consensus        17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~-----~g~~~~~p~~~-------~~~~~~~~~p~gv~~d~~g~L~v~   83 (343)
T 2qe8_A           17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELT-----QDGLIPFPPQS-------GNAIITFDTVLGIKSDGNGIVWML   83 (343)
T ss_dssp             SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEE-----TTEEEESCCCC-------SSCCCCCSCEEEEEECSSSEEEEE
T ss_pred             CCcceEEEC-CCCCEEEEeCCCCCCceEEEEEC-----CCCeecCCCcc-------cCcccceeEeeEEEEcCCCcEEEE
Confidence            589999996 48999999642  2  3788873     56554332110       012246889999999999999999


Q ss_pred             eCC-----CCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC---CCCeEEEEECCC
Q 024317          121 DKS-----NHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH---GNQLIRQINLKP  190 (269)
Q Consensus       121 D~~-----n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~---~n~~I~~~~~~~  190 (269)
                      |.+     .++|.++|.+ |+ ......+...         ......|++|+++++++.+||+|.   .++.|++++...
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            987     5899999975 65 3322221100         011356899999987689999999   889999999876


Q ss_pred             CeEEEeccc--CccCCCcccceeeee-------------ccceeeEEEecCC-cEEEEcCCC
Q 024317          191 EDCSKSSQS--GSALGAVSVWVLVSV-------------LSCLVSLVIGFVA-RPYIIRHTG  236 (269)
Q Consensus       191 ~~~~~~~~~--g~~~g~~~~~~~~~~-------------l~~p~gia~d~~g-~lyVad~~g  236 (269)
                      .........  ........++..+..             ...|.||+++++| .+|+++..+
T Consensus       155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence            554443211  100000111111111             1458999999999 699999655

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=6.8e-12  Score=108.39  Aligned_cols=159  Identities=11%  Similarity=0.128  Sum_probs=109.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEE-EcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~-~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      ..|.+++++++++++||++..+ .|+++|.    +|++..+ ....         ....+..|.+|++|++|++||++..
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~----~g~~~~~~~~~~---------~~~~~~~~~~i~~d~~g~l~v~~~~  136 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRL-GLLVVQT----DGTFEEIAKKDS---------EGRRMQGCNDCAFDYEGNLWITAPA  136 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTT-EEEEEET----TSCEEECCSBCT---------TSCBCBCCCEEEECTTSCEEEEECB
T ss_pred             CCCceEEEecCCCcEEEEECCC-CEEEEeC----CCCEEEEEeccC---------CCccccCCcCEEECCCCCEEEEecC
Confidence            5799999964339999999754 8999964    3776654 3211         0123568999999999999999986


Q ss_pred             C---------------CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEe----CCCCEEEEEECCCCeE
Q 024317          124 N---------------HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFV----PHICALLISDHGNQLI  183 (269)
Q Consensus       124 n---------------~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~----~~~g~LyVaD~~n~~I  183 (269)
                      .               ++|.++++++. ..+..                .+..|++++++    +++..|||++..+++|
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~----------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i  200 (314)
T 1pjx_A          137 GEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKL  200 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEE
T ss_pred             cccccccccccccCCCCeEEEECCCCCEEEecc----------------CCCCcceEEEecccCCCCCEEEEEECCCCeE
Confidence            5               68999998876 44432                15678999999    8844799999999999


Q ss_pred             EEEECCC-CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcccc
Q 024317          184 RQINLKP-EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPP  241 (269)
Q Consensus       184 ~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~  241 (269)
                      ++++.+. +......... .....       .+..|.+|++|++|++||++. .+++...
T Consensus       201 ~~~~~~~~g~~~~~~~~~-~~~~~-------~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          201 WSYDIKGPAKIENKKVWG-HIPGT-------HEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEETTEEEEEEEEE-ECCCC-------SSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             EEEECCCCCccccceEEE-ECCCC-------CCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            9998652 2211100000 00000       014589999999999999983 4455433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=5.2e-12  Score=111.50  Aligned_cols=142  Identities=9%  Similarity=-0.016  Sum_probs=103.6

Q ss_pred             CCCcceEEEecCCCeEEEEeCC-CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~-~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...|.+|++  .++.+||++++ .+.|.++|+   .++++...+..              -..|.+++++++|++||++.
T Consensus       130 ~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~---~t~~~~~~i~~--------------g~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          130 SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT---ETDKVVDELTI--------------GIQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             TCBCCCEEE--ETTEEEEEECTTCCEEEEEET---TTTEEEEEEEC--------------SSCBCCCEECTTSEEEEEBC
T ss_pred             CCCcceEEE--ECCEEEEEcCCCCCEEEEEEC---CCCeEEEEEEc--------------CCCccceEEcCCCCEEEEEC
Confidence            348999999  48999999985 899999985   45665544322              13789999999999999998


Q ss_pred             CC----------CEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          123 SN----------HVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       123 ~n----------~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ++          ++|.++|+.. + ......+.              -..|++|+++++++.|||++.   .|++++...
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--------------g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t  253 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--------------GDWPSEVQLNGTRDTLYWINN---DIWRMPVEA  253 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--------------TCCCEEEEECTTSCEEEEESS---SEEEEETTC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC--------------CCCceeEEEecCCCEEEEEcc---EEEEEECCC
Confidence            76          8999999764 3 22222110              136999999998889999986   799999876


Q ss_pred             CeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcEEEEc
Q 024317          191 EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIR  233 (269)
Q Consensus       191 ~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad  233 (269)
                      ..+......  ..          ....|.||++|+ +|+|||++
T Consensus       254 ~~~~~~~~~--~~----------~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          254 DRVPVRPFL--EF----------RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             SSCCSSCSB--CC----------CSSCEEEEEECTTTCCEEEEE
T ss_pred             Cceeeeeee--cC----------CCCceEEEEEcCCCCeEEEEc
Confidence            543210000  00          126799999997 77999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=2.3e-11  Score=105.55  Aligned_cols=150  Identities=10%  Similarity=-0.057  Sum_probs=109.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..++|.++++.++.+|++|..+++|+++|.   ..+....+. .              -..|.+++++++|++||+. 
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~---~~~~~~~~~-~--------------~~~~~~i~~~~dG~l~v~~-   71 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS---FTKQVQRVT-M--------------DAPVSSVALRQSGGYVATI-   71 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEET---TTCCEEEEE-C--------------SSCEEEEEEBTTSSEEEEE-
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEEC---CCCcEEEEe-C--------------CCceEEEEECCCCCEEEEE-
Confidence            45579999998778999999999999999975   344444332 1              1368899999999999998 


Q ss_pred             CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-----------CCeEEEEECC
Q 024317          123 SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-----------NQLIRQINLK  189 (269)
Q Consensus       123 ~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-----------n~~I~~~~~~  189 (269)
                       .+.|.+++++ +. ..+......           ..++.|++++++++ |++||++..           .++|++++.+
T Consensus        72 -~~~l~~~d~~~g~~~~~~~~~~~-----------~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~  138 (297)
T 3g4e_A           72 -GTKFCALNWKEQSAVVLATVDND-----------KKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPD  138 (297)
T ss_dssp             -TTEEEEEETTTTEEEEEEECCTT-----------CSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred             -CCeEEEEECCCCcEEEEEecCCC-----------CCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECC
Confidence             5799999976 44 554432110           12567999999997 889999843           4578888876


Q ss_pred             CCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCccc
Q 024317          190 PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLDP  240 (269)
Q Consensus       190 ~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~~  240 (269)
                      +.......                .+..|.||+++++| .+|+++. .++++.
T Consensus       139 g~~~~~~~----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~  175 (297)
T 3g4e_A          139 HHVKKYFD----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDA  175 (297)
T ss_dssp             SCEEEEEE----------------EESBEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CCEEEEee----------------ccccccceEEcCCCCEEEEecCCCCcEEE
Confidence            65433211                23669999999999 5999984 455554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.36  E-value=1.2e-10  Score=102.67  Aligned_cols=147  Identities=11%  Similarity=0.008  Sum_probs=107.6

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      ...|.+|++++ ++.+||++...++|.++|+   .++++...+..+.        ...++..|.+|++ .++.|||++.+
T Consensus        83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~---~t~~~~~~i~~g~--------~~~~~~~p~~i~~-~~~~lyv~~~~  149 (328)
T 3dsm_A           83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINP---KTYEITGYIECPD--------MDMESGSTEQMVQ-YGKYVYVNCWS  149 (328)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEBSCSEEEEEET---TTTEEEEEEECTT--------CCTTTCBCCCEEE-ETTEEEEEECT
T ss_pred             CCCCcEEEEeC-CCeEEEEECCCCeEEEEEC---CCCeEEEEEEcCC--------ccccCCCcceEEE-ECCEEEEEcCC
Confidence            56899999965 5799999977899999985   4666654432221        1123568999999 68889999984


Q ss_pred             -CCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC----------CeEEEEECC
Q 024317          124 -NHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN----------QLIRQINLK  189 (269)
Q Consensus       124 -n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n----------~~I~~~~~~  189 (269)
                       .++|.++|... +  .++..                 -..|.+|+++++ |.+||++.++          ++|.+++..
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~-----------------g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTI-----------------GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEEC-----------------SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             CCCEEEEEECCCCeEEEEEEc-----------------CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECC
Confidence             88999999754 3  23221                 246899999997 8999999876          899999988


Q ss_pred             CCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC
Q 024317          190 PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH  234 (269)
Q Consensus       190 ~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~  234 (269)
                      ...+......  +.+           ..|.+|++++++ .+|+++.
T Consensus       212 t~~v~~~~~~--~~g-----------~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          212 TFTVEKQFKF--KLG-----------DWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             TTEEEEEEEC--CTT-----------CCCEEEEECTTSCEEEEESS
T ss_pred             CCeEEEEEec--CCC-----------CCceeEEEecCCCEEEEEcc
Confidence            7655432111  111           359999999876 8899886

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.36  E-value=1.6e-11  Score=110.04  Aligned_cols=179  Identities=8%  Similarity=-0.011  Sum_probs=113.6

Q ss_pred             eecCCCcEEEEEecCccCCCCcceEEEecCCCe-EEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcccCCCCCcccccC
Q 024317           26 LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSD-LIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQGYSDGEPGSARF  103 (269)
Q Consensus        26 ~~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~-lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~g~~dg~~~~~~~  103 (269)
                      ..+++|+.++.+..   .+..|.+|++++ +|+ +||++. .++|++++    .+|.... +.+...       ......
T Consensus         2 ~~~p~g~~~~~va~---~l~~P~~i~~~p-dG~~l~V~e~-~G~i~~~~----~~g~~~~~~~~~~~-------v~~~g~   65 (353)
T 2g8s_A            2 AMAPATVNVEVLQD---KLDHPWALAFLP-DNHGMLITLR-GGELRHWQ----AGKGLSAPLSGVPD-------VWAHGQ   65 (353)
T ss_dssp             ----CCSEEEEEEE---EESSEEEEEECS-TTCCEEEEET-TTEEEEEE----TTTEECCCCBSCCC-------CCCSTT
T ss_pred             CCCCCCcEEEEEEC---CCCCcEEEEEcC-CCCEEEEEeC-CceEEEEe----CCCceeeEecCCcc-------cccCCC
Confidence            35678888988875   466999999975 788 999997 48999995    4555432 211110       001123


Q ss_pred             CCCceEEEcC----CCCEEEEeCC-------CCEEEEEeCCc---c----eEEe-cCCCCCCCCCCCccccccccCceEE
Q 024317          104 DKPKSFAVDM----KGNIYVADKS-------NHVIRKITNLG---V----TTIA-GGGSKKEGRADGPAQNASFSNDFEL  164 (269)
Q Consensus       104 ~~P~giavd~----~G~lyVaD~~-------n~~I~~~~~~g---~----~~~~-g~~~~~~~~~~~~~~~~~l~~P~gi  164 (269)
                      ..|.+|++++    ++.|||++..       .++|.+++.++   .    ..+. +....          ......|.+|
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~----------~~~~h~~~~l  135 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL----------STGNHFGGRL  135 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCC----------BSSSCCCCCE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCC----------CCCcccCccE
Confidence            4678999998    5889999865       46888887432   1    2222 21100          1124668999


Q ss_pred             EEeCCCCEEEEEECC-------------CCeEEEEECCCCeEEEecccC--ccCCCcccceeeeeccceeeEEEec-CCc
Q 024317          165 TFVPHICALLISDHG-------------NQLIRQINLKPEDCSKSSQSG--SALGAVSVWVLVSVLSCLVSLVIGF-VAR  228 (269)
Q Consensus       165 a~~~~~g~LyVaD~~-------------n~~I~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~l~~p~gia~d~-~g~  228 (269)
                      +++++ |.|||+...             .++|+++++++..-.  ..+-  ........|..  .+..|.|+++|+ .|+
T Consensus       136 ~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~--~npf~~~~~~~~~i~a~--G~rnp~gl~~d~~~g~  210 (353)
T 2g8s_A          136 VFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD--DNPFIKESGVRAEIWSY--GIRNPQGMAMNPWSNA  210 (353)
T ss_dssp             EECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT--TCTTTTSTTSCTTEEEE--CCSEEEEEEEETTTTE
T ss_pred             EECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC--CCCCcCCCCCCccEEEE--cCcCccceEEECCCCC
Confidence            99998 899999643             358999999875211  1110  00012223332  357799999999 899


Q ss_pred             EEEEcCC
Q 024317          229 PYIIRHT  235 (269)
Q Consensus       229 lyVad~~  235 (269)
                      ||++|+.
T Consensus       211 l~~~d~g  217 (353)
T 2g8s_A          211 LWLNEHG  217 (353)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9999965

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=4e-11  Score=103.52  Aligned_cols=158  Identities=9%  Similarity=0.031  Sum_probs=113.2

Q ss_pred             CCCCcceEEEecCCCeEEEE-------eCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC-
Q 024317           43 LEINPHSVIDRPGSSDLIVL-------DSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-  114 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~-------D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~-  114 (269)
                      .+..|.+++++ .++++|++       +...++|+++|.   .+|++..+....         .......|.+++++++ 
T Consensus        16 ~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~---~~g~~~~~~~~~---------~~~~~~~~~~i~~~~~~   82 (314)
T 1pjx_A           16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDL---KTGKKTVICKPE---------VNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECT---TTCCEEEEECCE---------ETTEECCEEEEEECSSS
T ss_pred             cCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeC---CCCcEEEEEecc---------cCCCCCCCceEEEecCC
Confidence            56789999996 68899999       888899999963   467766553210         0012357999999999 


Q ss_pred             CCEEEEeCCCCEEEEEeCCcc-eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC------------
Q 024317          115 GNIYVADKSNHVIRKITNLGV-TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN------------  180 (269)
Q Consensus       115 G~lyVaD~~n~~I~~~~~~g~-~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n------------  180 (269)
                      |+|||++..+ .|.+++.+|. ..+ .....           ......|++|+++++ |+|||++..+            
T Consensus        83 g~l~v~~~~~-~l~~~d~~g~~~~~~~~~~~-----------~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           83 NQLFVADMRL-GLLVVQTDGTFEEIAKKDSE-----------GRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             SEEEEEETTT-EEEEEETTSCEEECCSBCTT-----------SCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTS
T ss_pred             CcEEEEECCC-CEEEEeCCCCEEEEEeccCC-----------CccccCCcCEEECCC-CCEEEEecCccccccccccccc
Confidence            9999999854 8999998876 444 32110           012567999999997 8999999865            


Q ss_pred             ---CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEe----cCC-cEEEEcC-CCCccccc
Q 024317          181 ---QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIG----FVA-RPYIIRH-TGRLDPPL  242 (269)
Q Consensus       181 ---~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d----~~g-~lyVad~-~g~~~~~~  242 (269)
                         ++|++++.++.......                .+..|.+++++    ++| .+||++. .+++....
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~----------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~  204 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDT----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEE----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEecc----------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence               68999987754332211                22568899999    999 7999984 45565443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.34  E-value=1.4e-10  Score=101.21  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=111.0

Q ss_pred             CCcceEEEecCCCeEEEEeCC------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E
Q 024317           45 INPHSVIDRPGSSDLIVLDSS------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I  117 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l  117 (269)
                      ..|.+++++++++.+|+++..      .+.|+++|.   .++++......+              ..|.+++++++|+ +
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l  103 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP---VTLEVTQAIHND--------------LKPFGATINNTTQTL  103 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT---TTCCEEEEEEES--------------SCCCSEEEETTTTEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC---CCCeEEEEEecC--------------CCcceEEECCCCCEE
Confidence            369999999877899999976      668999974   455554443221              2588999999998 9


Q ss_pred             EEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-CCCeEEEEECCCCeE
Q 024317          118 YVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-GNQLIRQINLKPEDC  193 (269)
Q Consensus       118 yVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-~n~~I~~~~~~~~~~  193 (269)
                      ||++...+.|.++|.. ++  ..+.......       ........|.+++++++++.||+++. .+++|++++......
T Consensus       104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEESCCCCC-------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             EEEecCCCEEEEEeCCCCeeEEEEecCCCcc-------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence            9999998999999975 44  2332211000       00011234889999999788999994 578899999887655


Q ss_pred             EEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317          194 SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL  242 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~  242 (269)
                      ......   .+           ..|.+++++++| .+|+++.++.+...+
T Consensus       177 ~~~~~~---~~-----------~~~~~~~~s~dg~~l~~~~~~~~i~~~d  212 (353)
T 3vgz_A          177 KTAIQN---TG-----------KMSTGLALDSEGKRLYTTNADGELITID  212 (353)
T ss_dssp             EEEECC---CC-----------TTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred             EEEecC---CC-----------CccceEEECCCCCEEEEEcCCCeEEEEE
Confidence            433221   01           347788999888 588888776665443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.34  E-value=4.1e-11  Score=110.95  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=117.6

Q ss_pred             ecCCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC
Q 024317           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (269)
Q Consensus        27 ~~~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P  106 (269)
                      .++.++.++.+.++   +..|.+|++.+ +|+|||++...++|++++.   .+|+...+..... ...    .......+
T Consensus        12 ~~~~gf~~~~~a~~---l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~---~~g~~~~~~~~~~-~~~----~~~g~~Gl   79 (454)
T 1cru_A           12 AKSENFDKKVILSN---LNKPHALLWGP-DNQIWLTERATGKILRVNP---ESGSVKTVFQVPE-IVN----DADGQNGL   79 (454)
T ss_dssp             CCCTTSCEEEEECC---CSSEEEEEECT-TSCEEEEETTTCEEEEECT---TTCCEEEEEECTT-CCC----CTTSSCSE
T ss_pred             CCCCCeEEEEEECC---CCCceEEEEcC-CCcEEEEEcCCCEEEEEEC---CCCcEeEEecCCc-ccc----ccCCCCce
Confidence            56788889988754   67999999964 8999999998889999952   3577666543211 000    00112356


Q ss_pred             ceEEEcC----CCCEEEEeCC------------CCEEEEEeCCc------c-eEEe-cCCCCCCCCCCCccccccccCce
Q 024317          107 KSFAVDM----KGNIYVADKS------------NHVIRKITNLG------V-TTIA-GGGSKKEGRADGPAQNASFSNDF  162 (269)
Q Consensus       107 ~giavd~----~G~lyVaD~~------------n~~I~~~~~~g------~-~~~~-g~~~~~~~~~~~~~~~~~l~~P~  162 (269)
                      .||++++    ++.|||+++.            .++|.+++.+.      . ..+. +...            .....+.
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H~~~  147 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQSG  147 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCCEE
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCCCCC
Confidence            7999998    7889999964            46888887432      1 2222 1111            1246789


Q ss_pred             EEEEeCCCCEEEEEECC--------------------------------CCeEEEEECCCCeEEEecccCccCC-Ccccc
Q 024317          163 ELTFVPHICALLISDHG--------------------------------NQLIRQINLKPEDCSKSSQSGSALG-AVSVW  209 (269)
Q Consensus       163 gia~~~~~g~LyVaD~~--------------------------------n~~I~~~~~~~~~~~~~~~~g~~~g-~~~~~  209 (269)
                      +|+++++ |.|||+-..                                .++|+|+++++..-  ...+ +..+ ....|
T Consensus       148 ~l~f~pD-G~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip--~~Np-f~~~~~~ei~  223 (454)
T 1cru_A          148 RLVIGPD-QKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP--KDNP-SFNGVVSHIY  223 (454)
T ss_dssp             EEEECTT-SCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC--TTCC-EETTEECSEE
T ss_pred             eEeECCC-CeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC--CCCC-CCCCCcceEE
Confidence            9999998 899998432                                36789998877511  0000 0000 11223


Q ss_pred             eeeeeccceeeEEEecCCcEEEEcCC
Q 024317          210 VLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       210 ~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ..  .+-.|.|+++|++|+||++|+.
T Consensus       224 a~--G~RNp~gla~dp~G~L~~~d~g  247 (454)
T 1cru_A          224 TL--GHRNPQGLAFTPNGKLLQSEQG  247 (454)
T ss_dssp             EB--CCSEEEEEEECTTSCEEEEEEC
T ss_pred             EE--CCCCcceEEECCCCCEEEEecC
Confidence            32  3467999999999999999964

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.34  E-value=4.7e-11  Score=105.36  Aligned_cols=179  Identities=6%  Similarity=-0.036  Sum_probs=116.1

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEE---cCCCCEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV---DMKGNIYV  119 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav---d~~G~lyV  119 (269)
                      ...+|+++++++.++.+||++..+++|.+++.   ..+.+..+.=.+..  .+|    .....|.||.+   |++|.|||
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~---~~~~~~~~~~~~~s--~~g----~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNP---KTQSHFNVVIDGAS--SNG----DGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECT---TTCCEEEECCTTTC--CSS----CCSEEEEEEEESSSSSCCEEEE
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcC---CCCeEEEEecCCcc--ccC----CCcceeeEEEEeccCCCCcEEE
Confidence            44589999998778999999999999999953   22444433111100  001    11235689999   78999998


Q ss_pred             -EeC------------CCCEEEEEeCC----cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-
Q 024317          120 -ADK------------SNHVIRKITNL----GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-  180 (269)
Q Consensus       120 -aD~------------~n~~I~~~~~~----g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-  180 (269)
                       +|.            +.+.+.++|..    ++ ...+.......+..  ......+..|++|++|++ |++||+|+.. 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~g~~~~~~nDvavD~~-GnaYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKAGKRPFGVVQSAQDRD-GNSYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHHSSCCEEEEEEEECTT-SCEEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccccccccCCceeEECCC-CCEEEeCCCCC
Confidence             662            36789999977    65 43333210000000  000002345899999997 9999999999 


Q ss_pred             CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317          181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL  242 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~  242 (269)
                      +.|++++++|.....+.... +..        .....+.||+++++| .|+|++..|++..-+
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~-~~~--------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWES-GNG--------GQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECC-CCS--------SSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             CeEEEEeCCCCEEeeeeecC-CCc--------ccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            99999999998665443221 111        023568999999999 566676777776544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.31  E-value=1.8e-10  Score=102.79  Aligned_cols=174  Identities=14%  Similarity=0.080  Sum_probs=114.6

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi  109 (269)
                      +...++++.+   .+..|.+|++.+ +|.+||++...++|++++   ..+|+...+.+...       ........|.||
T Consensus        20 ~~~~~~~va~---gL~~P~~ia~~p-dG~llVter~~G~I~~v~---~~~g~~~~v~~~~~-------v~~~g~~GllGi   85 (347)
T 3das_A           20 SVKVLRTVAT---GLNSPWGLAPLP-GGDLLVSSRDEATITRVD---AKTGRKTELGEVPG-------VSPSGEGGLLGI   85 (347)
T ss_dssp             CEEEEEEEEC---CCSSEEEEEECT-TSCEEEEETTTCEEEEEC---TTTCCEEEEEECTT-------CCCBTTBSEEEE
T ss_pred             CCceeEEeec---CCCCceEEEEcC-CCcEEEEEecCCEEEEEE---CCCCcEeeecccCc-------eeecCCCCceee
Confidence            4456666654   466999999974 789999999889999995   23466554432210       011234578999


Q ss_pred             EEcC----CCCEEEEeC--CCCEEEEEeCCc---------c-eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCE
Q 024317          110 AVDM----KGNIYVADK--SNHVIRKITNLG---------V-TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICA  172 (269)
Q Consensus       110 avd~----~G~lyVaD~--~n~~I~~~~~~g---------~-~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~  172 (269)
                      ++++    +|.|||+.+  ..++|.++..++         . ..+. +...            .....+..|+++++ |.
T Consensus        86 a~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~fgpD-G~  152 (347)
T 3das_A           86 ALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIAFGPD-KM  152 (347)
T ss_dssp             EECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEEECTT-SC
T ss_pred             EeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCccccCCCC-CC
Confidence            9997    588999764  467999987544         1 2221 2111            12456778999998 89


Q ss_pred             EEEEEC-------------CCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCC
Q 024317          173 LLISDH-------------GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGR  237 (269)
Q Consensus       173 LyVaD~-------------~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~  237 (269)
                      |||+-.             ..++|+++++++..-     ...+.-....|..  .+-.|.|+++|++|+||++|+..+
T Consensus       153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip-----~~nPf~~~~i~a~--G~RNp~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA-----PGNPFPGSPVYSY--GHRNVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC-----TTCSSTTCCEEEB--CCSBCCEEEECTTCCEEEEECCSS
T ss_pred             EEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc-----CCCCCCCCeEEee--CCCCcceEEECCCCCEEEEecCCC
Confidence            999942             357899999887521     0001111223333  346799999999999999997543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=1.2e-10  Score=101.60  Aligned_cols=159  Identities=13%  Similarity=0.043  Sum_probs=108.7

Q ss_pred             CCcceEEEecCCCeEEEEeCCC----CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSSR----SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~----~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      ..|.+|+++ .+|++||++...    +.|+++|.   ..+.+..+....           .....|.+|++|++|++||+
T Consensus        87 ~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~---~~~~~~~~~~~~-----------~~~~~~~~i~~d~~g~l~v~  151 (333)
T 2dg1_A           87 ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATE---NGDNLQDIIEDL-----------STAYCIDDMVFDSKGGFYFT  151 (333)
T ss_dssp             SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECT---TSCSCEEEECSS-----------SSCCCEEEEEECTTSCEEEE
T ss_pred             CCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeC---CCCEEEEEEccC-----------ccCCcccceEECCCCCEEEE
Confidence            468999996 478999999876    79999964   344444332110           01357899999999999999


Q ss_pred             eCC------CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC--C
Q 024317          121 DKS------NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK--P  190 (269)
Q Consensus       121 D~~------n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~--~  190 (269)
                      +..      +.+|.++++++.  ..+..                .+..|+++++++++..|||++..+++|++++.+  +
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g  215 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQ----------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  215 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEE----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeec----------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence            975      478999998763  33322                145689999999855799999988999999984  3


Q ss_pred             CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          191 EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       191 ~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                      .....+.......      ..  ....|.+|++|++|++||++. .+++...+
T Consensus       216 ~~~~~~~~~~~~~------~~--~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          216 VTIQPFGATIPYY------FT--GHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             SSEEEEEEEEEEE------CC--SSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cCcccccceEEEe------cC--CCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence            3332211000000      00  013689999999999999984 45555433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.30  E-value=3.8e-11  Score=107.43  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=100.1

Q ss_pred             CCCcceEEEecC---CCeEEEEeCCC-----CEEEEEecCCCCCccE---EEEEc-CCcccCCCCCcccccCCCCceEEE
Q 024317           44 EINPHSVIDRPG---SSDLIVLDSSR-----SAFYTLSFPLSEESVV---KRLAG-DGVQGYSDGEPGSARFDKPKSFAV  111 (269)
Q Consensus        44 ~~~P~giav~~~---~g~lyV~D~~~-----~~I~~~dl~~~~~g~~---~~~~g-~g~~g~~dg~~~~~~~~~P~giav  111 (269)
                      ...|.||+++|+   ++.|||++..+     ++|.++++.   ++.+   ..+.. ...        .......|.+|++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~---~~~~~~~~~l~~~~p~--------~~~~~h~~~~l~~  142 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL---GERGVLDRVVLDGIPA--------RPHGLHSGGRIAF  142 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC---SSCEEEEEEEEEEECC--------CTTCCCCCCCEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC---CCCcCceEEEEEeCCC--------CCCCCcCCceEEE
Confidence            468999999765   58999999864     899999763   2222   22211 110        0123457899999


Q ss_pred             cCCCCEEEEeCC-------------CCEEEEEeCCcceEEecCCCCCCCCC---CCccccccccCceEEEEeCCCCEEEE
Q 024317          112 DMKGNIYVADKS-------------NHVIRKITNLGVTTIAGGGSKKEGRA---DGPAQNASFSNDFELTFVPHICALLI  175 (269)
Q Consensus       112 d~~G~lyVaD~~-------------n~~I~~~~~~g~~~~~g~~~~~~~~~---~~~~~~~~l~~P~gia~~~~~g~LyV  175 (269)
                      +++|.|||++..             .++|.+++++|... .+.   .+...   ........+..|+||+++++.+.||+
T Consensus       143 ~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p-~~n---pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v  218 (352)
T 2ism_A          143 GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA-PGN---PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFS  218 (352)
T ss_dssp             CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC-TTC---TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEE
T ss_pred             CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC-CCC---cccCCCCCCccEEEEcCCCcccEEEECCCCCEEE
Confidence            999999999742             36999999988310 000   00000   00011123678999999996699999


Q ss_pred             EECCCCe--------EEEEECCCCeEE--EecccCccCC-CcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          176 SDHGNQL--------IRQINLKPEDCS--KSSQSGSALG-AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       176 aD~~n~~--------I~~~~~~~~~~~--~~~~~g~~~g-~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      +|.+.++        |.++...+..-.  ..+.. ...+ ....+.. .....|.|+++ .+|++||++..+
T Consensus       219 ~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~-~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~  287 (352)
T 2ism_A          219 SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG-NDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRG  287 (352)
T ss_dssp             EEECC------CCCEEEEECTTCBCCTTTCCSCC-CCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTT
T ss_pred             EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC-CCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCC
Confidence            9998877        444432211000  00000 0000 0000000 01246999999 579999999554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.29  E-value=6.4e-10  Score=97.02  Aligned_cols=152  Identities=13%  Similarity=0.120  Sum_probs=109.8

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....|.+++++ .++++|+++...+.|+++|.   .++++..+...             .-..|.+|+++++|++||++.
T Consensus        43 ~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~---~~~~~~~~~~~-------------~~~~~~~i~~~~dg~l~v~~~  105 (333)
T 2dg1_A           43 KGLQLEGLNFD-RQGQLFLLDVFEGNIFKINP---ETKEIKRPFVS-------------HKANPAAIKIHKDGRLFVCYL  105 (333)
T ss_dssp             SCCCEEEEEEC-TTSCEEEEETTTCEEEEECT---TTCCEEEEEEC-------------SSSSEEEEEECTTSCEEEEEC
T ss_pred             cCccccCcEEC-CCCCEEEEECCCCEEEEEeC---CCCcEEEEeeC-------------CCCCcceEEECCCCcEEEEeC
Confidence            34579999996 57889999999999999974   35666554311             124789999999999999998


Q ss_pred             CC----CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC------CCeEEEEECCC
Q 024317          123 SN----HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG------NQLIRQINLKP  190 (269)
Q Consensus       123 ~n----~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~------n~~I~~~~~~~  190 (269)
                      .+    +.|.+++.++.  ..+.....             ....|++|+++++ |++||++..      +++|++++.++
T Consensus       106 ~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          106 GDFKSTGGIFAATENGDNLQDIIEDLS-------------TAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             TTSSSCCEEEEECTTSCSCEEEECSSS-------------SCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCCCceEEEEeCCCCEEEEEEccCc-------------cCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCC
Confidence            76    79999998776  32322110             1357899999997 899999975      46899998776


Q ss_pred             CeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCccc
Q 024317          191 EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLDP  240 (269)
Q Consensus       191 ~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~~  240 (269)
                      ........               .+..|.+++++++|+ +|+++. .+++..
T Consensus       172 ~~~~~~~~---------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          172 RTVTPIIQ---------------NISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             CCEEEEEE---------------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CEEEEeec---------------CCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence            44332211               124588999999995 999873 445543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.29  E-value=5.6e-11  Score=104.84  Aligned_cols=169  Identities=18%  Similarity=0.119  Sum_probs=107.6

Q ss_pred             CCcceEEE---ecCCCeEEE-EeC------------CCCEEEEEecCCCCCccEEEEEcCCcccCCCC-Ccc-cccCCCC
Q 024317           45 INPHSVID---RPGSSDLIV-LDS------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDG-EPG-SARFDKP  106 (269)
Q Consensus        45 ~~P~giav---~~~~g~lyV-~D~------------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg-~~~-~~~~~~P  106 (269)
                      ..|.||.+   ++ .++||| +|.            +.+.|.++|+..+.+|+....+.-..  ..++ +.. ...+..|
T Consensus        63 ~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~--~~~~~~~~~g~~~~~~  139 (334)
T 2p9w_A           63 QQMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK--VQDEFEKKAGKRPFGV  139 (334)
T ss_dssp             EEEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH--HHHHHHHHHSSCCEEE
T ss_pred             ceeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc--ccccccccccccccCC
Confidence            36799999   54 599998 552            46889999874334566555442100  0000 000 0023468


Q ss_pred             ceEEEcCCCCEEEEeCCC-CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          107 KSFAVDMKGNIYVADKSN-HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n-~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      ++|++|++|++||+|+.. ..|.+++++|+ ........+.         ......|+||++.|++..|+|++. .++|.
T Consensus       140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~---------~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~  209 (334)
T 2p9w_A          140 VQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN---------GGQRPGYSGITFDPHSNKLIAFGG-PRALT  209 (334)
T ss_dssp             EEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCC---------SSSCCSCSEEEEETTTTEEEEESS-SSSEE
T ss_pred             ceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCC---------cccccCcceEEEeCCCCEEEEEcC-CCeEE
Confidence            999999999999999988 99999999998 3322211100         012456899999999778899998 99999


Q ss_pred             EEECCCCeEEEecccCccCCCcccceeeeeccceeeE-EEecCCcE-EEEcC
Q 024317          185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSL-VIGFVARP-YIIRH  234 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gi-a~d~~g~l-yVad~  234 (269)
                      +|+........+...  ..|..      ..+..|.+| +...+|++ +|++.
T Consensus       210 ~fD~~~pv~~~v~~~--~~G~~------~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          210 AFDVSKPYAWPEPVK--INGDF------GTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EEECSSSSCCCEECE--ESSCC------CCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             EEcCCCCcceeeccc--ccCCc------ccccCcccccccccCCEEEEEEcC
Confidence            999873221001110  00100      034668885 77888866 88884

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=2.2e-10  Score=98.90  Aligned_cols=155  Identities=15%  Similarity=0.072  Sum_probs=112.9

Q ss_pred             cceEEEecCCCeEEEEeCC-CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~-~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ..++.+. .+|+++|++.+ +++|+.+    +++|++....+...     +  ....+..|.+++++++|+++|++..++
T Consensus        79 ~~~~~~~-~dG~~lv~~~~~~~~v~~v----d~~Gk~l~~~~~~~-----~--~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           79 MQTARIL-PDGNALVAWCGHPSTILEV----NMKGEVLSKTEFET-----G--IERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEEEEC-TTSCEEEEEESTTEEEEEE----CTTSCEEEEEEECC-----S--CSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             ccccEEC-CCCCEEEEecCCCCEEEEE----eCCCCEEEEEeccC-----C--CCcccccccCceECCCCCEEEEecCCC
Confidence            3456664 58899999987 8899988    56787655443210     0  112345688899999999999999999


Q ss_pred             EEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC-CCeEEEecccCccCC
Q 024317          126 VIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK-PEDCSKSSQSGSALG  204 (269)
Q Consensus       126 ~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~-~~~~~~~~~~g~~~g  204 (269)
                      +|..+|++|+..+.-..               -..|.++++.++ |+++|++..+++|..|+++ |+.+-.+...... +
T Consensus       147 ~v~~~d~~G~~~w~~~~---------------~~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-~  209 (276)
T 3no2_A          147 EVREIAPNGQLLNSVKL---------------SGTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-G  209 (276)
T ss_dssp             EEEEECTTSCEEEEEEC---------------SSCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-S
T ss_pred             EEEEECCCCCEEEEEEC---------------CCCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-C
Confidence            99999999982222110               135778888876 8999999999999999999 7777666533111 1


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEEcCCCCc
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL  238 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~  238 (269)
                              ..+..|.++++.++|++||+++.|..
T Consensus       210 --------~~l~~~~~~~~~~~G~i~v~~~~g~~  235 (276)
T 3no2_A          210 --------VQLFFVAQLFPLQNGGLYICNWQGHD  235 (276)
T ss_dssp             --------CCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred             --------ccccccccceEcCCCCEEEEeccCcc
Confidence                    13467999999999999999976543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.26  E-value=1e-09  Score=96.26  Aligned_cols=174  Identities=7%  Similarity=-0.010  Sum_probs=111.3

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....|.+|++++++..||+++...+.|..+++  +.+|....+......+.  +.........|.+++++++|++|+++.
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~--~~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKI--AADGALTLTDTVQHSGH--GPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEE--CTTSCEEEEEEEECCCC--CSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe--CCCCCeeecceeecCCC--CCCccccCCCceEEEECCCCcEEEEeC
Confidence            35689999998766679999988899999987  34565544322110000  000112345788999999999999999


Q ss_pred             CCCEEEEEeCC--cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEec
Q 024317          123 SNHVIRKITNL--GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP--EDCSKSS  197 (269)
Q Consensus       123 ~n~~I~~~~~~--g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~--~~~~~~~  197 (269)
                      ..++|++++.+  |. ........            ..-..|.+++++|++..||+++..+++|+.++.+.  +......
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~------------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTM------------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEc------------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            99999988854  54 32221100            00236889999999666999999999988887663  3322211


Q ss_pred             cc-CccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCcc
Q 024317          198 QS-GSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLD  239 (269)
Q Consensus       198 ~~-g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~  239 (269)
                      .. ..+.+..       ....|.+++++++|+ ||+++. .+.+.
T Consensus       228 ~~~~~~~~~~-------~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          228 IVKTIPADYT-------AHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             EEESSCTTCC-------SCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             eeeecCCCCC-------CCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            11 0011100       114588999999995 888874 44443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.24  E-value=1.9e-09  Score=92.22  Aligned_cols=173  Identities=14%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEE--EEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK--RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVA  120 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~--~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVa  120 (269)
                      +..|+||++. .++.+||++..+++++.++.  ..++.+.  .....+   ...    ...=....|||+|+++ .||++
T Consensus        69 ~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v--~~~~~i~~~~~~~~~---~~~----~~~N~g~EGLA~d~~~~~L~va  138 (255)
T 3qqz_A           69 VKDLETIEYI-GDNQFVISDERDYAIYVISL--TPNSEVKILKKIKIP---LQE----SPTNCGFEGLAYSRQDHTFWFF  138 (255)
T ss_dssp             CSSEEEEEEC-STTEEEEEETTTTEEEEEEE--CTTCCEEEEEEEECC---CSS----CCCSSCCEEEEEETTTTEEEEE
T ss_pred             CCChHHeEEe-CCCEEEEEECCCCcEEEEEc--CCCCeeeeeeeeccc---ccc----ccccCCcceEEEeCCCCEEEEE
Confidence            4689999995 57889999999999999876  3455432  222111   000    0001124899999977 59998


Q ss_pred             eCCCC-EEEEEe--CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          121 DKSNH-VIRKIT--NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       121 D~~n~-~I~~~~--~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      .-... +|+.++  ..+. .++.....        ......+..|++|+++|..++|||....+++|..++..+..+...
T Consensus       139 ~E~~p~~i~~~~g~~~~~~l~i~~~~~--------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~  210 (255)
T 3qqz_A          139 KEKNPIEVYKVNGLLSSNELHISKDKA--------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEM  210 (255)
T ss_dssp             EESSSEEEEEEESTTCSSCCEEEECHH--------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEE
T ss_pred             ECcCCceEEEEcccccCCceeeecchh--------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEE
Confidence            86544 788887  1222 22221100        000012456899999999999999999999999999999866554


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDP  240 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~  240 (269)
                      .-.....+   +   .-.+..|.|||+|++|+|||+...+.++.
T Consensus       211 ~L~~g~~~---l---~~~~~qpEGia~d~~G~lyIvsE~n~~y~  248 (255)
T 3qqz_A          211 SLTKGSRG---L---SHNIKQAEGVAMDASGNIYIVSEPNRFYR  248 (255)
T ss_dssp             ECSTTGGG---C---SSCCCSEEEEEECTTCCEEEEETTTEEEE
T ss_pred             EcCCccCC---c---ccccCCCCeeEECCCCCEEEEcCCceEEE
Confidence            32210001   0   01346799999999999999986665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.22  E-value=1.1e-09  Score=96.35  Aligned_cols=153  Identities=12%  Similarity=0.108  Sum_probs=105.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC-
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~-  123 (269)
                      ..|.++++++ +|++||+.  .+.|+++|.   .+|++..+....         .....+.|+++++|++|++||++.. 
T Consensus        90 ~~v~~i~~~~-dg~l~v~~--~~gl~~~d~---~~g~~~~~~~~~---------~~~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           90 FMGSALAKIS-DSKQLIAS--DDGLFLRDT---ATGVLTLHAELE---------SDLPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             SCEEEEEEEE-TTEEEEEE--TTEEEEEET---TTCCEEEEECSS---------TTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcceEEEEeC-CCeEEEEE--CCCEEEEEC---CCCcEEEEeeCC---------CCCCCCCCCCEEECCCCCEEEEeCCC
Confidence            3578888864 78899987  456999974   467766554221         0012457899999999999999863 


Q ss_pred             -----CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC--CC-eE-
Q 024317          124 -----NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK--PE-DC-  193 (269)
Q Consensus       124 -----n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~--~~-~~-  193 (269)
                           ...|++++ +|. ..+..                .+..|+++++++++..||++|..+++|++++.+  .+ .. 
T Consensus       155 ~~~~~~~~l~~~~-~g~~~~~~~----------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~  217 (326)
T 2ghs_A          155 KAETGAGSIYHVA-KGKVTKLFA----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  217 (326)
T ss_dssp             TCCTTCEEEEEEE-TTEEEEEEE----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             cCCCCceEEEEEe-CCcEEEeeC----------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc
Confidence                 46899999 776 44432                145689999999866899999999999999975  22 11 


Q ss_pred             --EEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcccc
Q 024317          194 --SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPP  241 (269)
Q Consensus       194 --~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~  241 (269)
                        ..+...  . .         ....|.++++|++|++||+.. .+++...
T Consensus       218 ~~~~~~~~--~-~---------~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          218 KAEVFIDS--T-G---------IKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             CCEEEEEC--T-T---------SSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             CceEEEEC--C-C---------CCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence              001000  0 0         114589999999999999984 3445433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.19  E-value=8.8e-10  Score=98.71  Aligned_cols=161  Identities=7%  Similarity=0.016  Sum_probs=104.2

Q ss_pred             CCCcceEEEecCCCeEEEEe------------CCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEE
Q 024317           44 EINPHSVIDRPGSSDLIVLD------------SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D------------~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav  111 (269)
                      ...|++|++.+ +|.+|++.            ...++|+++|+. +++++...+.-.+.      .+.... -.|.||.+
T Consensus        49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~-~~~~~~~~l~~~g~------~~~~~~-f~PhGi~~  119 (355)
T 3sre_A           49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLN-EKEPAVSELEIIGN------TLDISS-FNPHGIST  119 (355)
T ss_dssp             CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETT-SSSCCEEECEEECS------SCCGGG-CCEEEEEE
T ss_pred             CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecC-CCCCceEEEEccCC------CCCcCc-eeeeeeEE
Confidence            35799999965 89999996            247889999864 23455444321110      011112 38999999


Q ss_pred             cC--CC--CEEEEeCC--CCE--EEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC----
Q 024317          112 DM--KG--NIYVADKS--NHV--IRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH----  178 (269)
Q Consensus       112 d~--~G--~lyVaD~~--n~~--I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~----  178 (269)
                      ..  +|  +|||+|..  +.+  |.++++++. .++...-.           ...++.||+++++++ |.+||++.    
T Consensus       120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-----------g~~~~~pND~~v~~~-G~fyvt~~~~ft  187 (355)
T 3sre_A          120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-----------HKLLPSVNDIVAVGP-EHFYATNDHYFI  187 (355)
T ss_dssp             EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-----------CTTCSSEEEEEEEET-TEEEEEESCSCS
T ss_pred             EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-----------cCCCCCCceEEEeCC-CCEEecCCcEeC
Confidence            65  45  49999976  445  556677765 43333211           023889999999997 99999976    


Q ss_pred             -------------CCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCccccc
Q 024317          179 -------------GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLDPPL  242 (269)
Q Consensus       179 -------------~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~~~~  242 (269)
                                   ..++|+++++. .....              .  ..+..|+|||++++| .+||+|. .++++...
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~~-~~~~~--------------~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~  249 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSPN-DVRVV--------------A--EGFDFANGINISPDGKYVYIAELLAHKIHVYE  249 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECTT-CCEEE--------------E--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CcccccchhhccCCccEEEEEECC-eEEEe--------------e--cCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence                         24567777652 11111              1  135789999999999 8999994 55665544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.19  E-value=7.2e-10  Score=99.27  Aligned_cols=164  Identities=14%  Similarity=0.050  Sum_probs=100.1

Q ss_pred             CCCcceEEEecCCCeEEEEeCC-------------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSS-------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~-------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      ...|.+|++++ +|.|||++..             +++|++++    .+|++-    .++ .+.........+..|.+|+
T Consensus       134 ~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~----~dG~~p----~~n-pf~~~~i~a~G~rnp~Gla  203 (354)
T 3a9g_A          134 IHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVD----EEGRPP----ADN-PFPNSPIWSYGHRNPQGID  203 (354)
T ss_dssp             SCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEEC----TTSCCC----TTS-SSTTCCEEEECCSCCCEEE
T ss_pred             CcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEc----CCCCCC----CCC-CCCCCcEEEEccCCcceEE
Confidence            45789999975 8899999643             35788884    444310    000 0001111123478999999


Q ss_pred             EcC-CCCEEEEeCCCCE---EEEEeCCcc---eEEecCCCCCCCCCCCc-cccc----cccCceEEEE-------eCCCC
Q 024317          111 VDM-KGNIYVADKSNHV---IRKITNLGV---TTIAGGGSKKEGRADGP-AQNA----SFSNDFELTF-------VPHIC  171 (269)
Q Consensus       111 vd~-~G~lyVaD~~n~~---I~~~~~~g~---~~~~g~~~~~~~~~~~~-~~~~----~l~~P~gia~-------~~~~g  171 (269)
                      +|+ +|+||++|.+.++   |.++.+.+.   ....+...     ..+. ....    .-..|.|+++       ..+ |
T Consensus       204 ~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~-----~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~-G  277 (354)
T 3a9g_A          204 WHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG-----RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLR-G  277 (354)
T ss_dssp             ECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC-----CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGT-T
T ss_pred             EeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC-----CCCCcCCEeecCCCCcCCcceEEECCCCCcccC-C
Confidence            999 8999999988654   555554221   11111000     0000 0001    1246999998       344 8


Q ss_pred             EEEEEECCCCeEEEEECCCCe-EEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          172 ALLISDHGNQLIRQINLKPED-CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       172 ~LyVaD~~n~~I~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                      .|||+|..+++|++++.++.. .......  ..+         ...+|.+|+++++|.|||++.
T Consensus       278 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--~~~---------~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          278 WLLIACLRGSMLAAVNFGDNMEVRKISTF--FKN---------VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEETTTTEEEEEEECGGGCEEEEEEE--CTT---------TSCCEEEEEECTTSCEEEEEC
T ss_pred             cEEEEEcCCCEEEEEEECCCCcccceeee--ccC---------CCCCeeEEEECCCCcEEEEEe
Confidence            999999999999999987532 2111000  001         136799999999999999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.15  E-value=1.7e-08  Score=87.86  Aligned_cols=148  Identities=9%  Similarity=0.066  Sum_probs=107.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ..|.++++++++..+|+++. ++.|+.+|+   .+++.......+..         ..-..|.+++++++|+ +|+++..
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~---~~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNA-DGELITIDT---ADNKILSRKKLLDD---------GKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECT-TSEEEEEET---TTTEEEEEEECCCS---------SSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CccceEEECCCCCEEEEEcC-CCeEEEEEC---CCCeEEEEEEcCCC---------CCCcccceEEECCCCCEEEEEeCC
Confidence            35999999887778999986 678999985   46665544322110         1133678899999988 9999998


Q ss_pred             CCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          124 NHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       124 n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .+.|.+++.. ++ .....                 ...|.+++++++++.|||++..++.|..++............  
T Consensus       252 ~~~v~~~d~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--  312 (353)
T 3vgz_A          252 AAEVLVVDTRNGNILAKVA-----------------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--  312 (353)
T ss_dssp             SSEEEEEETTTCCEEEEEE-----------------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--
T ss_pred             CCEEEEEECCCCcEEEEEE-----------------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--
Confidence            8999999974 33 22221                 234578999999777999999999999999876654432211  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCc-EEEEcCCCC
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHTGR  237 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~g~  237 (269)
                                   -..|.+++++++|+ +||+...+.
T Consensus       313 -------------~~~~~~~~~s~dg~~l~v~~~~~~  336 (353)
T 3vgz_A          313 -------------PTHPNSLALSADGKTLYVSVKQKS  336 (353)
T ss_dssp             -------------CSEEEEEEECTTSCEEEEEEECCC
T ss_pred             -------------CCCCCeEEEcCCCCEEEEEEcccc
Confidence                         13589999999996 999986543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.14  E-value=2.9e-09  Score=93.34  Aligned_cols=163  Identities=10%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ..|.+++++| +|++|+++...++|+.+++  ..+|++.......          ...-..|.+++++++|+ +|+++..
T Consensus       141 ~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~--~~~g~~~~~~~~~----------~~~g~~p~~~~~spdg~~l~v~~~~  207 (347)
T 3hfq_A          141 SHIHYTDLTP-DNRLAVIDLGSDKVYVYNV--SDAGQLSEQSVLT----------MEAGFGPRHLVFSPDGQYAFLAGEL  207 (347)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEEEE--CTTSCEEEEEEEE----------CCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEECC-CCcEEEEeCCCCEEEEEEE--CCCCcEEEeeeEE----------cCCCCCCceEEECCCCCEEEEEeCC
Confidence            3577899986 5559999999999999987  3467655432110          00113688999999998 9999998


Q ss_pred             CCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEecc
Q 024317          124 NHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE-DCSKSSQ  198 (269)
Q Consensus       124 n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~-~~~~~~~  198 (269)
                      .++|.+++.+   |. ..+.........       ......|.+++++|++..|||++..+++|..++.+.. .......
T Consensus       208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          208 SSQIASLKYDTQTGAFTQLGIVKTIPAD-------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEESSCTT-------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             CCEEEEEEecCCCCceEEeeeeeecCCC-------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            8998888744   44 222111100000       0112468999999996679999998899999987522 1111111


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCc-EEEEcCC-CCcc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHT-GRLD  239 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~-g~~~  239 (269)
                      .  ..          .-..|.+++++++|+ ||+++.. +.+.
T Consensus       281 ~--~~----------~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          281 I--ST----------EGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             E--EC----------SSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             E--ec----------CCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            1  00          014588999999995 8999854 4443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=1.6e-08  Score=86.97  Aligned_cols=156  Identities=8%  Similarity=-0.025  Sum_probs=101.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVaD~~n  124 (269)
                      ++.|++++  ++++|++++..+++.++|.   .++++...+..+               .|.|+.+.++| .+|++| +.
T Consensus        67 fgeGi~~~--g~~lyv~t~~~~~v~viD~---~t~~v~~~i~~g---------------~~~g~glt~Dg~~l~vs~-gs  125 (266)
T 2iwa_A           67 FGEGLTLL--NEKLYQVVWLKNIGFIYDR---RTLSNIKNFTHQ---------------MKDGWGLATDGKILYGSD-GT  125 (266)
T ss_dssp             CEEEEEEE--TTEEEEEETTCSEEEEEET---TTTEEEEEEECC---------------SSSCCEEEECSSSEEEEC-SS
T ss_pred             ceEEEEEe--CCEEEEEEecCCEEEEEEC---CCCcEEEEEECC---------------CCCeEEEEECCCEEEEEC-CC
Confidence            56678883  6899999999999999984   455544433211               23444454455 499999 68


Q ss_pred             CEEEEEeCCcc---eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc-
Q 024317          125 HVIRKITNLGV---TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS-  199 (269)
Q Consensus       125 ~~I~~~~~~g~---~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~-  199 (269)
                      ++|.++|+...   .++ .+...            ..+..|+++.+. + +.||++....+.|.+|++....+...-.. 
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~------------~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNG------------HRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             CeEEEEECCCCcEEEEEEECCCC------------cccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence            89999998763   222 22110            115578999987 4 79999999999999999987655443222 


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCC-cEEEEc-CCCCc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR-HTGRL  238 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad-~~g~~  238 (269)
                      +.....  ..........|.|||+++++ ++||+. ..+.+
T Consensus       192 g~~~~~--~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          192 NLRKKL--IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             HHHHHH--HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             Cccccc--ccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            100000  00000012568999999998 899998 34444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.09  E-value=1.3e-08  Score=89.75  Aligned_cols=163  Identities=11%  Similarity=0.098  Sum_probs=104.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc----c-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES----V-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV  119 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g----~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyV  119 (269)
                      +|++++++|++..+|+++.+.++|..++++ ...+    + +.........       ....-..|.+++++++|. +|+
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNIN-PNANADNKEKFLTKGTPEAF-------KVAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEC-TTCCTTTCCCCEEEEEEEEE-------ECCTTCCEEEEEECTTSSEEEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEc-CCCCcccccceeecccccce-------ecCCCCCCeEEEEcCCCCEEEE
Confidence            457899987556799999999999988764 2222    2 2111000000       001124688999999997 999


Q ss_pred             EeCCCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECC--CCeEE
Q 024317          120 ADKSNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLK--PEDCS  194 (269)
Q Consensus       120 aD~~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~--~~~~~  194 (269)
                      ++...++|.+++.+ |. ..+......          ...+..|.+|+++|++..||+++.. .++|..|+.+  .+...
T Consensus       228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~----------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~  297 (361)
T 3scy_A          228 INEIGGTVIAFRYADGMLDEIQTVAAD----------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT  297 (361)
T ss_dssp             EETTTCEEEEEEEETTEEEEEEEEESC----------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred             EcCCCCeEEEEEecCCceEEeEEEecC----------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence            99888999998853 43 222211100          1124568899999997789999998 8888888765  22222


Q ss_pred             EecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc-CCCCcc
Q 024317          195 KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR-HTGRLD  239 (269)
Q Consensus       195 ~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad-~~g~~~  239 (269)
                      .....  ..+           ..|.+++++++|+ ||+++ ..+.+.
T Consensus       298 ~~~~~--~~g-----------~~~~~~~~spdg~~l~~~~~~~~~v~  331 (361)
T 3scy_A          298 KVGYQ--LTG-----------IHPRNFIITPNGKYLLVACRDTNVIQ  331 (361)
T ss_dssp             EEEEE--ECS-----------SCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred             EeeEe--cCC-----------CCCceEEECCCCCEEEEEECCCCCEE
Confidence            21111  001           4588999999995 89988 344443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.08  E-value=1.6e-09  Score=96.85  Aligned_cols=177  Identities=11%  Similarity=0.066  Sum_probs=104.4

Q ss_pred             CCCcceEEEecCCCeEEEEeCC-------------CCEEEEEecCCCCCccEEEEEcCCcccCCC----CCcccccCCCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSS-------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSD----GEPGSARFDKP  106 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~-------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~d----g~~~~~~~~~P  106 (269)
                      ..+|.+|++++ +|.|||+...             .++|++++    .+|++-    .+++-...    .......+..|
T Consensus       129 ~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~----~dG~~p----~~npf~~~~~~~~~i~a~G~rnp  199 (353)
T 2g8s_A          129 NHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLT----DQGEIP----DDNPFIKESGVRAEIWSYGIRNP  199 (353)
T ss_dssp             SCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE----TTSCCC----TTCTTTTSTTSCTTEEEECCSEE
T ss_pred             cccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEEC----CCCCCC----CCCCCcCCCCCCccEEEEcCcCc
Confidence            34688999975 7899999743             35788885    344310    11110000    11123457889


Q ss_pred             ceEEEcC-CCCEEEEeCCCC---EEEEEeCCcce---EEecCCCC---CCC-----CCCCccc-cc---cccCceEEEEe
Q 024317          107 KSFAVDM-KGNIYVADKSNH---VIRKITNLGVT---TIAGGGSK---KEG-----RADGPAQ-NA---SFSNDFELTFV  167 (269)
Q Consensus       107 ~giavd~-~G~lyVaD~~n~---~I~~~~~~g~~---~~~g~~~~---~~~-----~~~~~~~-~~---~l~~P~gia~~  167 (269)
                      .++++|+ +|+||++|.+.+   +|.++.+.+..   .+.+....   .+.     ...+... ..   .-..|.|+++.
T Consensus       200 ~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y  279 (353)
T 2g8s_A          200 QGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFY  279 (353)
T ss_dssp             EEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEE
T ss_pred             cceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEE
Confidence            9999999 899999998753   56666543321   11110000   000     0000000 00   01368999997


Q ss_pred             CC------CCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-c-CCCCcc
Q 024317          168 PH------ICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-R-HTGRLD  239 (269)
Q Consensus       168 ~~------~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d-~~g~~~  239 (269)
                      ..      +|.+||+|..+++|++++.++.........          ..+ ...+|.+|+++++|.|||+ | .+|+++
T Consensus       280 ~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~----------~~~-~~~rp~~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          280 NSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI----------LTD-RGQRIRDVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE----------SGG-GCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred             CCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc----------ccC-CCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence            42      389999999999999999876532211100          001 2368999999999999997 5 456655


Q ss_pred             c
Q 024317          240 P  240 (269)
Q Consensus       240 ~  240 (269)
                      +
T Consensus       349 r  349 (353)
T 2g8s_A          349 K  349 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.08  E-value=3.1e-08  Score=83.91  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=106.7

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ..|+++  .+++||++++.+++++++|.   .+.++...+..+              ..+.|++-| .+.||++|. .++
T Consensus        67 geGi~~--~~~~ly~ltw~~~~v~v~D~---~tl~~~~ti~~~--------------~~Gwglt~d-g~~L~vSdg-s~~  125 (243)
T 3mbr_X           67 GAGIVA--WRDRLIQLTWRNHEGFVYDL---ATLTPRARFRYP--------------GEGWALTSD-DSHLYMSDG-TAV  125 (243)
T ss_dssp             EEEEEE--ETTEEEEEESSSSEEEEEET---TTTEEEEEEECS--------------SCCCEEEEC-SSCEEEECS-SSE
T ss_pred             eeEEEE--eCCEEEEEEeeCCEEEEEEC---CcCcEEEEEeCC--------------CCceEEeeC-CCEEEEECC-CCe
Confidence            466777  47999999999999999984   455544433221              134567654 456999995 889


Q ss_pred             EEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc-Ccc
Q 024317          127 IRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS-GSA  202 (269)
Q Consensus       127 I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~-g~~  202 (269)
                      |.++|+...   .++.-. ..+          ..+..++.|...  +|.||+.....+.|.+|++..+.+...-.- +..
T Consensus       126 l~~iDp~t~~~~~~I~V~-~~g----------~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~  192 (243)
T 3mbr_X          126 IRKLDPDTLQQVGSIKVT-AGG----------RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALV  192 (243)
T ss_dssp             EEEECTTTCCEEEEEECE-ETT----------EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred             EEEEeCCCCeEEEEEEEc-cCC----------cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence            999998753   222111 000          124567788765  389999999999999999988766554322 111


Q ss_pred             CCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc-ccccccccCC
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL-QHDMEALPNQ  252 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~-~~~~~~~~~~  252 (269)
                      .....  ........|+|||.|+++ ++||+-   ..|... +..+...|.+
T Consensus       193 ~~~~~--~~~~~~~vlNGIA~d~~~~~lfVTG---K~wp~~~~v~~~~~~~~  239 (243)
T 3mbr_X          193 PDADA--LTDSTNDVLNGIAFDAEHDRLFVTG---KRWPMLYEIRLTPLPHA  239 (243)
T ss_dssp             TTTTS--CCCTTSSCEEEEEEETTTTEEEEEE---TTCSEEEEEEECCCCC-
T ss_pred             ccccc--ccCCcCCceEEEEEcCCCCEEEEEC---CCCCcEEEEEEecCCcc
Confidence            11000  000122579999999976 999985   466666 5555544443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.06  E-value=2e-08  Score=85.79  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ..||++  .+++||++++.+++++++|.   .+.++...+..+              ..+.+++.| .+.||++|. .++
T Consensus        89 geGit~--~g~~ly~ltw~~~~v~v~D~---~t~~~~~ti~~~--------------~eG~glt~d-g~~L~~SdG-s~~  147 (262)
T 3nol_A           89 GEGISD--WKDKIVGLTWKNGLGFVWNI---RNLRQVRSFNYD--------------GEGWGLTHN-DQYLIMSDG-TPV  147 (262)
T ss_dssp             EEEEEE--ETTEEEEEESSSSEEEEEET---TTCCEEEEEECS--------------SCCCCEEEC-SSCEEECCS-SSE
T ss_pred             eeEEEE--eCCEEEEEEeeCCEEEEEEC---ccCcEEEEEECC--------------CCceEEecC-CCEEEEECC-CCe
Confidence            366777  47899999999999999985   455544433211              133566654 356999995 789


Q ss_pred             EEEEeCCcc---eEEec-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc-Cc
Q 024317          127 IRKITNLGV---TTIAG-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS-GS  201 (269)
Q Consensus       127 I~~~~~~g~---~~~~g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~-g~  201 (269)
                      |+++|+...   .++.- ...            ..+..++.+... + |.||+.....+.|.+|++..+.+...-.. +.
T Consensus       148 i~~iDp~T~~v~~~I~V~~~g------------~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L  213 (262)
T 3nol_A          148 LRFLDPESLTPVRTITVTAHG------------EELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGI  213 (262)
T ss_dssp             EEEECTTTCSEEEEEECEETT------------EECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTG
T ss_pred             EEEEcCCCCeEEEEEEeccCC------------ccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcC
Confidence            999998743   23211 110            125667888876 4 89999999999999999988766544322 11


Q ss_pred             cCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc-ccccc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL-QHDME  247 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~-~~~~~  247 (269)
                      ......   .......|+|||.|+++ ++||+.   ..|... +..+.
T Consensus       214 ~~~~~~---~~~~~~vlNGIA~dp~~~~lfVTG---K~Wp~~~ev~~~  255 (262)
T 3nol_A          214 LAEAGP---LPSPIDVLNGIAWDKEHHRLFVTG---KLWPKVFEITLT  255 (262)
T ss_dssp             GGGSCS---CCSSCCCEEEEEEETTTTEEEEEE---TTCSEEEEEEEE
T ss_pred             cccccc---ccCcCCceEEEEEcCCCCEEEEEC---CCCCceEEEEEe
Confidence            100000   00123579999999976 899985   356555 44443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.06  E-value=1.9e-08  Score=86.68  Aligned_cols=144  Identities=9%  Similarity=-0.058  Sum_probs=103.2

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC-
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~-  123 (269)
                      ..|+++++.+ +|++|++  .+++|+.+|    ++|++......+.            -....++.+.++|+++|++.. 
T Consensus        37 ~~~~~~~~~p-dG~ilvs--~~~~V~~~d----~~G~~~W~~~~~~------------~~~~~~~~~~~dG~~lv~~~~~   97 (276)
T 3no2_A           37 WECNSVAATK-AGEILFS--YSKGAKMIT----RDGRELWNIAAPA------------GCEMQTARILPDGNALVAWCGH   97 (276)
T ss_dssp             CCCCEEEECT-TSCEEEE--CBSEEEEEC----TTSCEEEEEECCT------------TCEEEEEEECTTSCEEEEEEST
T ss_pred             CCCcCeEECC-CCCEEEe--CCCCEEEEC----CCCCEEEEEcCCC------------CccccccEECCCCCEEEEecCC
Confidence            3689999975 8899995  478899994    5787666543210            012356788899999999988 


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +++|..++++|+  ..+.-.. ..         ...+..|.+++++++ |+++|++..+++|..|+++|+.+..+...  
T Consensus        98 ~~~v~~vd~~Gk~l~~~~~~~-~~---------~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~G~~~w~~~~~--  164 (276)
T 3no2_A           98 PSTILEVNMKGEVLSKTEFET-GI---------ERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPNGQLLNSVKLS--  164 (276)
T ss_dssp             TEEEEEECTTSCEEEEEEECC-SC---------SSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTTSCEEEEEECS--
T ss_pred             CCEEEEEeCCCCEEEEEeccC-CC---------CcccccccCceECCC-CCEEEEecCCCEEEEECCCCCEEEEEECC--
Confidence            899999999998  3332111 00         112456788888887 88999999999999999998877665433  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                                    ..|.++++.++|+++|++.
T Consensus       165 --------------~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          165 --------------GTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             --------------SCCCEEEECTTSCEEEECB
T ss_pred             --------------CCccceeEcCCCCEEEEeC
Confidence                          2356677777788888774

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.06  E-value=7.4e-09  Score=91.03  Aligned_cols=144  Identities=10%  Similarity=0.042  Sum_probs=102.8

Q ss_pred             CCcceEEEecCCCeEEEEeCC------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-E
Q 024317           45 INPHSVIDRPGSSDLIVLDSS------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I  117 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-l  117 (269)
                      ..|.+++++ .+|++||++..      ...|++++     +|++..+..              .+..|++++++++|+ +
T Consensus       134 ~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~-----~g~~~~~~~--------------~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          134 NRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA-----KGKVTKLFA--------------DISIPNSICFSPDGTTG  193 (326)
T ss_dssp             EEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE-----TTEEEEEEE--------------EESSEEEEEECTTSCEE
T ss_pred             CCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe-----CCcEEEeeC--------------CCcccCCeEEcCCCCEE
Confidence            458899996 48899999853      46788883     466555431              234789999999996 9


Q ss_pred             EEEeCCCCEEEEEeC---Cc-c----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          118 YVADKSNHVIRKITN---LG-V----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       118 yVaD~~n~~I~~~~~---~g-~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      ||+|..+++|.+++.   +| .    ..+....             .....|.+++++++ |+|||++..+++|.+++++
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-------------~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-------------GIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-------------TSSSEEEEEEECTT-SCEEEEEETTTEEEEECTT
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEECC-------------CCCCCCCeeEECCC-CCEEEEEeCCCEEEEECCC
Confidence            999998999999985   35 2    1222110             01235899999987 8999999888899999997


Q ss_pred             CCeEEEecccCccCCCcccceeeeeccceeeEEEe-cCC-cEEEEcCCCC
Q 024317          190 PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIG-FVA-RPYIIRHTGR  237 (269)
Q Consensus       190 ~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d-~~g-~lyVad~~g~  237 (269)
                      +..+.....+               ...|.+++++ +++ .|||+...+.
T Consensus       260 g~~~~~i~~~---------------~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          260 GNHIARYEVP---------------GKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             CCEEEEEECS---------------CSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CCEEEEEECC---------------CCCcEEEEEecCCCCEEEEEecCCC
Confidence            7655443222               1348889998 675 7999985543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.00  E-value=4.7e-08  Score=86.17  Aligned_cols=170  Identities=8%  Similarity=0.028  Sum_probs=105.1

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC-CcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~-g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ...|..+++  ++..+|+++...+.|..+++  ..++.+...... ...+. ...+.......|.+++++++|+ ||+++
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~--~~~g~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPI--GQDGALLPASDVIEFKGS-GPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEB--CTTSCBCSCSEEEECCCC-CSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEe--CCCCcCcccceeEEccCC-CCCccccCCCcceEEEECCCCCEEEEEe
Confidence            457999998  47889999998999999987  344433221100 00000 0001122345678999999998 99999


Q ss_pred             CCCCEEEEEeCCcc-e-------EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          122 KSNHVIRKITNLGV-T-------TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       122 ~~n~~I~~~~~~g~-~-------~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ...++|.+++.+.. .       ...+....        .....-..|.+++++|++..||+++..++.|+.++.+.+..
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEA--------FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEE--------EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccc--------eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            98899888863311 1       00000000        00011246889999999668999998889999999875544


Q ss_pred             EEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcCC
Q 024317          194 SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRHT  235 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~~  235 (269)
                      ...........         ....|.+++++++|+ ||+++..
T Consensus       246 ~~~~~~~~~~~---------~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          246 DEIQTVAADTV---------NAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEEEESCSS---------CCCCEEEEEECTTSSEEEEEECS
T ss_pred             EEeEEEecCCC---------CCCCcccEEECCCCCEEEEECCC
Confidence            32221100001         124578999999995 8888754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=2.7e-08  Score=85.13  Aligned_cols=155  Identities=12%  Similarity=0.047  Sum_probs=101.8

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ..||++  .+++||++++.+++++++|.   .+.++...+..+              ..+.|++.| .+.||++| +.++
T Consensus        98 geGit~--~g~~Ly~ltw~~~~v~V~D~---~Tl~~~~ti~~~--------------~eGwGLt~D-g~~L~vSd-Gs~~  156 (268)
T 3nok_A           98 AEGLAS--DGERLYQLTWTEGLLFTWSG---MPPQRERTTRYS--------------GEGWGLCYW-NGKLVRSD-GGTM  156 (268)
T ss_dssp             EEEEEE--CSSCEEEEESSSCEEEEEET---TTTEEEEEEECS--------------SCCCCEEEE-TTEEEEEC-SSSE
T ss_pred             eeEEEE--eCCEEEEEEccCCEEEEEEC---CcCcEEEEEeCC--------------CceeEEecC-CCEEEEEC-CCCE
Confidence            366887  57899999999999999984   456555433211              134567764 35699999 5899


Q ss_pred             EEEEeCCcc---eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccC-c
Q 024317          127 IRKITNLGV---TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSG-S  201 (269)
Q Consensus       127 I~~~~~~g~---~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g-~  201 (269)
                      |+++|+...   .++. +...            ..+..++.|... + |.||+.....+.|.+|++..+.+...-..+ .
T Consensus       157 l~~iDp~T~~v~~~I~V~~~g------------~~v~~lNeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L  222 (268)
T 3nok_A          157 LTFHEPDGFALVGAVQVKLRG------------QPVELINELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASAL  222 (268)
T ss_dssp             EEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHH
T ss_pred             EEEEcCCCCeEEEEEEeCCCC------------cccccccccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCC
Confidence            999998753   2221 1110            125677888876 4 799999999999999999887665433221 0


Q ss_pred             -cCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccccc
Q 024317          202 -ALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDPPL  242 (269)
Q Consensus       202 -~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~~~  242 (269)
                       +......   ......|+|||.|+++ ++||+-   ..|...
T Consensus       223 ~~~~~~~~---~~~~~vlNGIA~dp~~~rlfVTG---K~Wp~~  259 (268)
T 3nok_A          223 TRAVAGQV---TNPEAVLNGIAVEPGSGRIFMTG---KLWPRL  259 (268)
T ss_dssp             HHHHTTTC---CCTTCCEEEEEECTTTCCEEEEE---TTCSEE
T ss_pred             cccccccc---cCcCCceEEEEEcCCCCEEEEeC---CCCCce
Confidence             0000000   0012569999999976 999974   455554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.95  E-value=1e-07  Score=82.48  Aligned_cols=159  Identities=12%  Similarity=0.116  Sum_probs=105.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCE-EEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSA-FYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~-I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ...|.+++++|++..+|+++...+. |..+++  +.+|.+......          ....-..|.+++++++|+ +|+++
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~--~~~g~~~~~~~~----------~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKI--DADGVLFDTGQE----------FISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE--CTTCCEEEEEEE----------EECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEE--CCCCcEeecCCc----------cccCCCCccceEECCCCCEEEEEe
Confidence            3468999998765679999988777 888876  455654332100          001123589999999998 99999


Q ss_pred             CCCCEEEEEeCCc-ce-E-EecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          122 KSNHVIRKITNLG-VT-T-IAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       122 ~~n~~I~~~~~~g-~~-~-~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      ..+++|.+++... .. . +....              .-..|.+++++|++..||++....+.|..++...........
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVG--------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEE--------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEECCCCcccceeeecc--------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence            9999999999653 22 1 11110              024688999999966799999988899999998766533221


Q ss_pred             cCcc--CCCcccceeeeeccceeeEEEecCC-cEEEEcCC
Q 024317          199 SGSA--LGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHT  235 (269)
Q Consensus       199 ~g~~--~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~  235 (269)
                      ....  ....       ......+++++++| .||++...
T Consensus       261 ~~~~~~~~~~-------~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          261 FGHGLLIDPR-------PLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EECCCCCCCG-------GGTTCCCEEECTTSSEEEEEETT
T ss_pred             cccccccCCC-------CcccccceEECCCCCEEEEecCC
Confidence            1000  0110       11223568999999 58888754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.95  E-value=5.1e-08  Score=83.78  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=99.7

Q ss_pred             CCcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+|+|+++++ ++.||++..  +.+.|.++|+   .+|++.....-+            .-.++.|++++ .+.||+++.
T Consensus        21 ~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~---~tg~v~~~i~l~------------~~~fgeGi~~~-g~~lyv~t~   83 (266)
T 2iwa_A           21 AFTQGLVYAE-NDTLFESTGLYGRSSVRQVAL---QTGKVENIHKMD------------DSYFGEGLTLL-NEKLYQVVW   83 (266)
T ss_dssp             CCEEEEEECS-TTEEEEEECSTTTCEEEEEET---TTCCEEEEEECC------------TTCCEEEEEEE-TTEEEEEET
T ss_pred             CCcccEEEeC-CCeEEEECCCCCCCEEEEEEC---CCCCEEEEEecC------------CCcceEEEEEe-CCEEEEEEe
Confidence            3689999974 489999975  5799999995   567766554221            12356788886 467999999


Q ss_pred             CCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc
Q 024317          123 SNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       123 ~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~  199 (269)
                      .++++.++|.+..   .++.- +               ...+++|+  ++++.|||+| +.++|+.+++........-..
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~-g---------------~~~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTH-Q---------------MKDGWGLA--TDGKILYGSD-GTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEEC-C---------------SSSCCEEE--ECSSSEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred             cCCEEEEEECCCCcEEEEEEC-C---------------CCCeEEEE--ECCCEEEEEC-CCCeEEEEECCCCcEEEEEEE
Confidence            9999999997643   33311 0               01234554  4557999999 688999999987554333222


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLD  239 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~  239 (269)
                      +. .+        ..+..|.++.+. +|.+|++.. ++.+.
T Consensus       145 g~-~~--------~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          145 KY-NG--------HRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EE-TT--------EECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             CC-CC--------cccccceeEEEE-CCEEEEecCCCCeEE
Confidence            10 01        023457888888 789998883 44444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.90  E-value=1.6e-07  Score=81.29  Aligned_cols=152  Identities=6%  Similarity=0.009  Sum_probs=98.6

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCce-EEEcCCCC-EEEE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKS-FAVDMKGN-IYVA  120 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~g-iavd~~G~-lyVa  120 (269)
                      ...| ++++++++..+|+++...++|+++|+   .++++ ......              -..|.. ++++++|+ +|++
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~  101 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIET---QLEPPKVVAIQE--------------GQSSMADVDITPDDQFAVTV  101 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEEC---SSSSCEEEEEEE--------------CSSCCCCEEECTTSSEEEEC
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC---CCCceeEEeccc--------------CCCCccceEECCCCCEEEEe
Confidence            3456 99998766679999998999999985   34543 222211              236777 99999998 6643


Q ss_pred             eCCCC--EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEE
Q 024317          121 DKSNH--VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL-IRQINLKPEDCSK  195 (269)
Q Consensus       121 D~~n~--~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~-I~~~~~~~~~~~~  195 (269)
                      +..++  .|.+++.+..  ......                -..|.+++++|++..||+++...+. |+.++.+......
T Consensus       102 ~~~~~~~~i~v~d~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A          102 TGLNHPFNMQSYSFLKNKFISTIPI----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CCSSSSCEEEEEETTTTEEEEEEEC----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCCCCcccEEEEECCCCCeEEEEEC----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence            33334  9999997543  222211                1357899999996679999998777 8777765432111


Q ss_pred             ecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCcc
Q 024317          196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLD  239 (269)
Q Consensus       196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~  239 (269)
                      ..... ..      .   .-..|.+++++++|+ +|+++. .+.+.
T Consensus       166 ~~~~~-~~------~---~~~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          166 DTGQE-FI------S---GGTRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             EEEEE-EE------C---SSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ecCCc-cc------c---CCCCccceEECCCCCEEEEEeCCCCeEE
Confidence            00000 00      0   114589999999996 899884 44444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.87  E-value=5.9e-08  Score=86.54  Aligned_cols=163  Identities=10%  Similarity=0.115  Sum_probs=98.7

Q ss_pred             CCcceEEEecCCCeEEEEeC-------------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEE
Q 024317           45 INPHSVIDRPGSSDLIVLDS-------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~-------------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giav  111 (269)
                      .++..|++++ +|.|||+..             ..++|+|++    .+|++-    .++ .+.+.......+..|.+|++
T Consensus       140 H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~----~dG~ip----~~n-Pf~~~~i~a~G~RNp~Gla~  209 (347)
T 3das_A          140 HNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT----PDGEPA----PGN-PFPGSPVYSYGHRNVQGLAW  209 (347)
T ss_dssp             CCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC----TTSSBC----TTC-SSTTCCEEEBCCSBCCEEEE
T ss_pred             ccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe----CCCCcc----CCC-CCCCCeEEeeCCCCcceEEE
Confidence            4567799974 789999942             356778874    444310    000 01111122345789999999


Q ss_pred             cCCCCEEEEeCCCC---EEEEEeCCcc---eEEecCCCCCCCCCCCccc-cccc----cCceEEEEeCCCCEEEEEECCC
Q 024317          112 DMKGNIYVADKSNH---VIRKITNLGV---TTIAGGGSKKEGRADGPAQ-NASF----SNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       112 d~~G~lyVaD~~n~---~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~-~~~l----~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      |++|+||++|.+.+   .|.++.+.+.   ..+.+..     ...+... ...+    ..|.||++..  +.+|+++..+
T Consensus       210 dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~-----~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~  282 (347)
T 3das_A          210 DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKG-----GGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRG  282 (347)
T ss_dssp             CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSC-----CCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTT
T ss_pred             CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCC-----CCccccCCcEecCCCCCCCcceEEEc--CceeeccccC
Confidence            99999999997653   4555543322   1111110     0001000 0111    3689999873  8999999999


Q ss_pred             CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                      ++|+++..++....  ...       ..+..+ ...+|.+|+++++|.|||++.
T Consensus       283 ~~l~~v~~~~~~~~--~~~-------e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          283 ERLWRIPLKGTAAA--ADP-------QAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CSEEEEEEETTEES--SCC-------EEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             CEEEEEEecCCcee--cce-------EEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            99999987765321  110       000111 236899999999999999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.87  E-value=2.1e-07  Score=80.37  Aligned_cols=158  Identities=9%  Similarity=0.085  Sum_probs=105.0

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      ...|.++++++++..+|+++..++.|..++++ ..+|+...+....            .-..|.+++++++|+ ||+++.
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA-PDDGALTFAAESA------------LPGSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEEC-TTTCCEEEEEEEE------------CSSCCSEEEECTTSSEEEEEET
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEec-CCCCceeeccccc------------cCCCCcEEEEcCCCCEEEEEec
Confidence            45799999987666799999887899988763 1245544332110            012789999999998 999998


Q ss_pred             CCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC-CeEEEec-
Q 024317          123 SNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP-EDCSKSS-  197 (269)
Q Consensus       123 ~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~-~~~~~~~-  197 (269)
                      ..+.|..++. ++.  .......              ....|.++++++++..||+++..+++|+.++... ....... 
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  169 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  169 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEECCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence            8888888876 332  1111110              1235889999999778999997788999998765 3332211 


Q ss_pred             -ccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc-CCCCcc
Q 024317          198 -QSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR-HTGRLD  239 (269)
Q Consensus       198 -~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad-~~g~~~  239 (269)
                       ......+           ..|.+++++++|+ +|+++ ..+++.
T Consensus       170 ~~~~~~~~-----------~~~~~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          170 AEVTTVEG-----------AGPRHMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             EEEECSTT-----------CCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccCCC-----------CCcceEEECCCCCEEEEEeCCCCEEE
Confidence             0000001           3578899999995 88887 444443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.86  E-value=3.1e-07  Score=79.26  Aligned_cols=166  Identities=11%  Similarity=0.055  Sum_probs=106.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      ...|.++++++++..+|+++...++|+.+|+  ..++++...... ..       ....-..|.+++++++|. +|+++.
T Consensus       128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~--~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          128 LDGCHSANISPDNRTLWVPALKQDRICLFTV--SDDGHLVAQDPA-EV-------TTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE--CTTSCEEEEEEE-EE-------ECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCceEEEECCCCCEEEEecCCCCEEEEEEe--cCCCceeeeccc-cc-------ccCCCCCcceEEECCCCCEEEEEeC
Confidence            3468999998766689999988899999987  344665432200 00       000113688999999998 999998


Q ss_pred             CCCEEEEEeCC---cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC--CCeEEEe
Q 024317          123 SNHVIRKITNL---GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK--PEDCSKS  196 (269)
Q Consensus       123 ~n~~I~~~~~~---g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~--~~~~~~~  196 (269)
                      ..++|..++.+   |. ...........+       ......|.++++++++..||+++..++.|..++.+  ++.....
T Consensus       198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          198 LNSSVDVWELKDPHGNIECVQTLDMMPEN-------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             TTTEEEEEESSCTTSCCEEEEEEECSCTT-------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             CCCEEEEEEecCCCCcEEEEeeccccCcc-------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            88999999864   32 211111000000       01134678999999967899999888999999886  3222221


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC-CCCcc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH-TGRLD  239 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~-~g~~~  239 (269)
                      ...  ..+           ..|.+++++++|+ +|++.. .+.+.
T Consensus       271 ~~~--~~~-----------~~~~~~~~s~dg~~l~~~~~~~~~v~  302 (343)
T 1ri6_A          271 GFQ--PTE-----------TQPRGFNVDHSGKYLIAAGQKSHHIS  302 (343)
T ss_dssp             EEE--ECS-----------SSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             eee--cCC-----------CccceEEECCCCCEEEEecCCCCeEE
Confidence            111  001           2378899999995 888883 45544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.78  E-value=3.4e-07  Score=81.26  Aligned_cols=171  Identities=14%  Similarity=0.049  Sum_probs=102.8

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      ...|++++++|++..+|++|.+.++|+.+++.  .+|++..+.....         ...-..|.+++++++|. ||+++.
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~--~~g~~~~~~~~~~---------~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKL--ASGEVELVGSVDA---------PDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCEEEEEEEEC---------SSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEEC--CCCCEEEeeeEec---------CCCCCCCCEeEECCCCCEEEEEEC
Confidence            35799999987666799999989999999863  2566543311000         00124699999999996 899998


Q ss_pred             CCCEEEEEeC---Ccc-eE----EecCCCCCCCCCCCccccccccCceEEE-EeCCCCEEEEEECCCC-----eEEEEEC
Q 024317          123 SNHVIRKITN---LGV-TT----IAGGGSKKEGRADGPAQNASFSNDFELT-FVPHICALLISDHGNQ-----LIRQINL  188 (269)
Q Consensus       123 ~n~~I~~~~~---~g~-~~----~~g~~~~~~~~~~~~~~~~~l~~P~gia-~~~~~g~LyVaD~~n~-----~I~~~~~  188 (269)
                      ..++|.+++.   .|. ..    +..... .+.......  .....|.+++ ++|++..||+++.+.+     +|..|+.
T Consensus       213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          213 AGNRICEYVIDPATHMPVYTHHSFPLIPP-GIPDRDPET--GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCT-TCCCBCTTT--SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             CCCeEEEEEEeCCCCcEEEccceEEcCCC-CcCCccccc--ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            8888888753   354 21    111110 000000000  0122588999 9999778999998665     8888876


Q ss_pred             C-CCeEEEecccCccCCCcccceeeeeccceeeEEEec---CC-cEEEEcCC-CCcc
Q 024317          189 K-PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF---VA-RPYIIRHT-GRLD  239 (269)
Q Consensus       189 ~-~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~---~g-~lyVad~~-g~~~  239 (269)
                      + .+......... ..          .-..|.++++++   +| .||+++.. +.+.
T Consensus       290 ~~~g~~~~~~~~~-~~----------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          290 RDCGSIEKQLFLS-PT----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             CTTSCEEEEEEEE-EC----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CCCCCEEEeeeee-ec----------CCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            4 22222211000 00          013466788888   66 78888753 5443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.77  E-value=2.8e-06  Score=75.09  Aligned_cols=140  Identities=12%  Similarity=0.235  Sum_probs=101.1

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n  124 (269)
                      .|.++++++++..||++....+.|+.+|+   .+++.......+              ..|.+++++++|. +|++...+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~---~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDT---TSNTVAGTVKTG--------------KSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEET---TTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEEC---CCCeEEEEEeCC--------------CCcceEEECCCCCEEEEEeCCC
Confidence            78999998777779999988899999985   355544433211              2578999999998 78999989


Q ss_pred             CEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          125 HVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       125 ~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      +.|+.++.. ++ ......                -..|.++++++++..||++...++.|+.++............   
T Consensus       138 ~~v~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---  198 (391)
T 1l0q_A          138 KTVSVINTVTKAVINTVSV----------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---  198 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC----------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred             CEEEEEECCCCcEEEEEec----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---
Confidence            999999964 43 222211                134789999998778999999899999999887654432211   


Q ss_pred             CCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                                  -..+.+++++++| .+|++.
T Consensus       199 ------------~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          199 ------------EAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             ------------SSEEEEEEECTTSSEEEEEE
T ss_pred             ------------CCCccceEECCCCCEEEEEe
Confidence                        1346677787777 466665

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.75  E-value=1.1e-07  Score=89.34  Aligned_cols=123  Identities=13%  Similarity=0.157  Sum_probs=83.5

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCC---------------------CEEEEEecCC----CCCccEEE--EEcCCccc--
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSR---------------------SAFYTLSFPL----SEESVVKR--LAGDGVQG--   92 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~---------------------~~I~~~dl~~----~~~g~~~~--~~g~g~~g--   92 (269)
                      ..+..|++|+++|.++.||++-++|                     +.|+++...-    ....+...  +.|.....  
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            3566899999998899999996643                     6788886421    01112233  33322100  


Q ss_pred             --CC--CCCcccccCCCCceEEEcCCCCEEE-EeC-----------CCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccc
Q 024317           93 --YS--DGEPGSARFDKPKSFAVDMKGNIYV-ADK-----------SNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQ  154 (269)
Q Consensus        93 --~~--dg~~~~~~~~~P~giavd~~G~lyV-aD~-----------~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~  154 (269)
                        +.  .+......|+.|.+|++|++|+||| +|.           .++.++++++ .|. ..++...            
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P------------  528 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP------------  528 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC------------
T ss_pred             ccccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC------------
Confidence              00  0111235799999999999999999 886           3668999998 466 6655321            


Q ss_pred             cccccCceEEEEeCCCCEEEEEEC
Q 024317          155 NASFSNDFELTFVPHICALLISDH  178 (269)
Q Consensus       155 ~~~l~~P~gia~~~~~g~LyVaD~  178 (269)
                        .+..|+||+++|++..|||+-.
T Consensus       529 --~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          529 --IGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             --TTCEEEEEEECTTSSEEEEEEE
T ss_pred             --CCccccCCEECCCCCEEEEEEe
Confidence              1457999999999889999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.74  E-value=2.9e-06  Score=74.98  Aligned_cols=146  Identities=14%  Similarity=0.253  Sum_probs=103.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n  124 (269)
                      .|.++++++++..+|++....+.|+.+|+   .+++.......+              ..|.+++++++|. ||++....
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~---~~~~~~~~~~~~--------------~~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDT---ATNNVIATVPAG--------------SSPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEET---TTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEEC---CCCeEEEEEECC--------------CCccceEECCCCCEEEEEECCC
Confidence            58999998766678999988899999985   456655443221              1678999999988 88999888


Q ss_pred             CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          125 HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       125 ~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      +.|++++....  ......                -..|.++++++++..||++...++.|+.++............   
T Consensus        96 ~~v~v~d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---  156 (391)
T 1l0q_A           96 STLSVIDTTSNTVAGTVKT----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---  156 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred             CEEEEEECCCCeEEEEEeC----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---
Confidence            99999997643  222211                135789999998667999999999999999876654432221   


Q ss_pred             CCCcccceeeeeccceeeEEEecCC-cEEEEc-CCCCcc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR-HTGRLD  239 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad-~~g~~~  239 (269)
                       +           ..|..++++++| .+|++. .++.+.
T Consensus       157 -~-----------~~~~~~~~~~dg~~l~~~~~~~~~v~  183 (391)
T 1l0q_A          157 -G-----------RSPKGIAVTPDGTKVYVANFDSMSIS  183 (391)
T ss_dssp             -C-----------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             -C-----------CCcceEEECCCCCEEEEEeCCCCEEE
Confidence             1           336678888888 455665 334443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.71  E-value=3e-07  Score=81.59  Aligned_cols=157  Identities=7%  Similarity=-0.025  Sum_probs=98.3

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC---EEEE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN---IYVA  120 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~---lyVa  120 (269)
                      ...|..+++++++..||+++..  .|..+++  ..+|++.......            .-..|..++++++|+   +|++
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~--~v~~~~~--~~~g~~~~~~~~~------------~~g~~~~~~~spdg~~l~~~~~  102 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK--KWSSFAV--KSPTEIVHEASHP------------IGGHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT--EEEEEEE--EETTEEEEEEEEE------------CCSSGGGGCTTSCCEEEEEEEC
T ss_pred             CCCCcEEEECCCCCEEEEEccc--eEEEEEE--CCCCCEEEeeEee------------cCCCCccEEECCCCCEEEEEEe
Confidence            3479999998766679999876  7888875  2356654432110            001377899999998   3455


Q ss_pred             e------C------CCCEEEEEe--CCcc-e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          121 D------K------SNHVIRKIT--NLGV-T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       121 D------~------~n~~I~~~~--~~g~-~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      +      +      ..+.+..++  .+|. . .+.....            .....|++++++|++..||++|.++++|+
T Consensus       103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~  170 (365)
T 1jof_A          103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLYSADLTANKLW  170 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence            4      2      355666555  4565 2 2221000            01356899999999668999999889999


Q ss_pred             EEECC-CCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCc
Q 024317          185 QINLK-PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRL  238 (269)
Q Consensus       185 ~~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~  238 (269)
                      .++.+ .+..........+.          .-..|.+++++++| .+|+++. .+.+
T Consensus       171 ~~~~~~~g~~~~~~~~~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v  217 (365)
T 1jof_A          171 THRKLASGEVELVGSVDAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             EEEECTTSCEEEEEEEECSS----------TTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEECCCCCEEEeeeEecCC----------CCCCCCEeEECCCCCEEEEEECCCCeE
Confidence            99986 33332211110000          01458999999999 6888874 4443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=2.2e-06  Score=73.15  Aligned_cols=181  Identities=10%  Similarity=-0.010  Sum_probs=110.2

Q ss_pred             CCcEEEEEe-cCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCce
Q 024317           30 DGYTVTTVI-DGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (269)
Q Consensus        30 ~g~~~~~~~-~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~g  108 (269)
                      ..+.+...+ .-.+....+.||++++.++.||++.....+|+++|+    +|++.....-            ..+..|.|
T Consensus        11 ~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~----~g~v~~~i~l------------~g~~D~EG   74 (255)
T 3qqz_A           11 QNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT----NGDLIRTIPL------------DFVKDLET   74 (255)
T ss_dssp             TTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET----TCCEEEEEEC------------SSCSSEEE
T ss_pred             cceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC----CCCEEEEEec------------CCCCChHH
Confidence            346665543 223344689999998778899986666899999974    4776665421            12357899


Q ss_pred             EEEcCCCCEEEEeCCCCEEEEEe--CCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC-eEEE
Q 024317          109 FAVDMKGNIYVADKSNHVIRKIT--NLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ-LIRQ  185 (269)
Q Consensus       109 iavd~~G~lyVaD~~n~~I~~~~--~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~-~I~~  185 (269)
                      |+++.+|.+||++-.++++.+++  .++...............     .. =....|||++++.+.||++..... +|+.
T Consensus        75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~-----~~-N~g~EGLA~d~~~~~L~va~E~~p~~i~~  148 (255)
T 3qqz_A           75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQES-----PT-NCGFEGLAYSRQDHTFWFFKEKNPIEVYK  148 (255)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSC-----CC-SSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccc-----cc-cCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence            99999999999998899999886  344211111100000000     00 012489999998779998887655 7888


Q ss_pred             EEC--CCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCCCCccc
Q 024317          186 INL--KPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLDP  240 (269)
Q Consensus       186 ~~~--~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~~  240 (269)
                      ++-  .+..........        +.....+..+.+|++|+.- ++||.....+...
T Consensus       149 ~~g~~~~~~l~i~~~~~--------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~  198 (255)
T 3qqz_A          149 VNGLLSSNELHISKDKA--------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQ  198 (255)
T ss_dssp             EESTTCSSCCEEEECHH--------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             EcccccCCceeeecchh--------hccccccCCceeEEEcCCCCeEEEEECCCCeEE
Confidence            871  111111111100        0001123458899999876 7888876544443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.64  E-value=1.3e-06  Score=75.49  Aligned_cols=152  Identities=8%  Similarity=-0.025  Sum_probs=98.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~  125 (269)
                      +.|+++. .++.+||+....+.|+++|+   .++++......+            ....|.+++++++|+ +|++...++
T Consensus         2 ~~g~~~~-~~~~~~v~~~~~~~v~~~d~---~~~~~~~~~~~~------------~~~~~~~~~~s~dg~~~~v~~~~~~   65 (349)
T 1jmx_B            2 DTGPALK-AGHEYMIVTNYPNNLHVVDV---ASDTVYKSCVMP------------DKFGPGTAMMAPDNRTAYVLNNHYG   65 (349)
T ss_dssp             --CCCCC-TTCEEEEEEETTTEEEEEET---TTTEEEEEEECS------------SCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             Ccccccc-CCCEEEEEeCCCCeEEEEEC---CCCcEEEEEecC------------CCCCCceeEECCCCCEEEEEeCCCC
Confidence            4577775 58999999999999999985   456654433211            012588999999997 899998899


Q ss_pred             EEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCe
Q 024317          126 VIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-----------NQLIRQINLKPED  192 (269)
Q Consensus       126 ~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-----------n~~I~~~~~~~~~  192 (269)
                      .|.+++.. ++ ..........         ...-..|.+++++|++..||++...           .+.|+.++.....
T Consensus        66 ~i~~~d~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           66 DIYGIDLDTCKNTFHANLSSVP---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEEEEETTTTEEEEEEESCCST---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             cEEEEeCCCCcEEEEEEccccc---------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence            99999975 43 2222111000         0012358899999997789999854           5789999876421


Q ss_pred             EEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          193 CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       193 ~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      .......            ......+.+++++++|++|+++..
T Consensus       137 ~~~~~~~------------~~~~~~~~~~~~s~dg~l~~~~~~  167 (349)
T 1jmx_B          137 EAKPVRT------------FPMPRQVYLMRAADDGSLYVAGPD  167 (349)
T ss_dssp             GBCCSEE------------EECCSSCCCEEECTTSCEEEESSS
T ss_pred             ccceeee------------ccCCCcccceeECCCCcEEEccCc
Confidence            1000000            001124677889999998887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.63  E-value=3.1e-07  Score=84.81  Aligned_cols=115  Identities=15%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             cCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCC---CCEEEEE
Q 024317          102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH---ICALLIS  176 (269)
Q Consensus       102 ~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~---~g~LyVa  176 (269)
                      .|..|.+|+++++|+|||++...++|++++. +|. ..+.......       ........+.|||++|+   ++.|||+
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-------~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-------NDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-------CCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc-------cccCCCCceeEEEECCCcCcCCEEEEE
Confidence            4789999999999999999987789999986 466 5554432110       00001245679999996   6999999


Q ss_pred             ECC------------CCeEEEEECCCC--eE----EEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          177 DHG------------NQLIRQINLKPE--DC----SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       177 D~~------------n~~I~~~~~~~~--~~----~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                      ++.            ..+|.+++.+..  .+    ..+...  +.+         ..-.+.+|+++++|.|||+..
T Consensus        98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~--p~~---------~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL--PSS---------KDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE--CCC---------SSCCEEEEEECTTSCEEEEEC
T ss_pred             EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcC--CCC---------CCCCCCeEeECCCCeEEEEEC
Confidence            964            468999986532  11    111111  111         113488999999999999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.61  E-value=5.6e-06  Score=77.94  Aligned_cols=154  Identities=8%  Similarity=-0.051  Sum_probs=102.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC----CCC-EEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM----KGN-IYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~----~G~-lyVa  120 (269)
                      .|+++++++++..+|+++.. +.|.+||+. ..++++...+..+              ..|.++++++    +|. +|++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~-~~t~~~~~~i~~g--------------~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLW-AKEPTKVAEIKIG--------------IEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETT-SSSCEEEEEEECC--------------SEEEEEEECCSTTCTTTEEEEE
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECc-CCCCcEEEEEecC--------------CCcceEEeCCCcCCCCCEEEEE
Confidence            38999999877889999987 999999862 1345544332221              2689999999    887 9999


Q ss_pred             eCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      ++..+.|.++|... +  .++...+...   ....  -..-..|.+|+++++++.+||+....++|+.++..........
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~---~~~~--~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~  318 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVSTRGMTV---DTQT--YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  318 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECS---SSCC--EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred             EccCCeEEEEeccccccceeecccCccc---Cccc--cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence            98889999999543 3  3333211100   0000  0001257899999987899999999999999997653211100


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR  233 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad  233 (269)
                      ..  .           .-..|.+++++++|+ +|++.
T Consensus       319 ~i--~-----------~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          319 SI--G-----------AAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EE--E-----------CCSSCCCEEECTTSCEEEEEE
T ss_pred             Ee--c-----------cCcCccCceECCCCCEEEEEe
Confidence            00  0           014588899999996 67776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.59  E-value=1.7e-06  Score=79.22  Aligned_cols=112  Identities=9%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CCCeEEEEeCCC----CEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC-------
Q 024317           55 GSSDLIVLDSSR----SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-------  122 (269)
Q Consensus        55 ~~g~lyV~D~~~----~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~-------  122 (269)
                      ....+||++...    +.|.++|.   .++++...+..|              ..| +|+++++|. +||+++       
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~---~t~~vv~~I~vG--------------~~P-gia~SpDgk~lyVan~~~~~~~~  144 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDG---STGRILGMTDGG--------------FLP-HPVAAEDGSFFAQASTVFERIAR  144 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEET---TTTEEEEEEEEC--------------SSC-EEEECTTSSCEEEEEEEEEETTE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEEC---CCCEEEEEEECC--------------CCC-ceEECCCCCEEEEEecccccccc
Confidence            356899999865    79999985   456655544332              268 999999998 999996       


Q ss_pred             --CCCEEEEEeCCcc---eEEe-c-CCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEE
Q 024317          123 --SNHVIRKITNLGV---TTIA-G-GGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCS  194 (269)
Q Consensus       123 --~n~~I~~~~~~g~---~~~~-g-~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~  194 (269)
                        ..+.|.+||....   .++. + ....           .....|.++++++++..|||++.. .+.|.+|+.....+.
T Consensus       145 G~~~~~VsviD~~t~~vv~~I~v~g~~r~-----------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          145 GKRTDYVEVFDPVTFLPIADIELPDAPRF-----------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCC-----------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCcccc-----------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence              3567999997543   3332 2 1100           012569999999998899999975 789999999887654


Q ss_pred             E
Q 024317          195 K  195 (269)
Q Consensus       195 ~  195 (269)
                      .
T Consensus       214 ~  214 (426)
T 3c75_H          214 R  214 (426)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.57  E-value=2.8e-06  Score=76.68  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=97.3

Q ss_pred             ecCCCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC----
Q 024317           53 RPGSSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS----  123 (269)
Q Consensus        53 ~~~~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~----  123 (269)
                      .|....+||+|..    .++|.++|.   .++++...+..|              ..|. |+++++|. +||++..    
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~---~t~~v~~~I~vG--------------~~P~-va~spDG~~lyVan~~~~r~  102 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDG---EAGRVIGMIDGG--------------FLPN-PVVADDGSFIAHASTVFSRI  102 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEET---TTTEEEEEEEEC--------------SSCE-EEECTTSSCEEEEEEEEEET
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEEC---CCCeEEEEEECC--------------CCCc-EEECCCCCEEEEEccccccc
Confidence            3567899999996    689999984   456655544332              2575 99999998 9999852    


Q ss_pred             -----CCEEEEEeCCcc---eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeE
Q 024317          124 -----NHVIRKITNLGV---TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDC  193 (269)
Q Consensus       124 -----n~~I~~~~~~g~---~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~  193 (269)
                           .+.|.+||....   .++ .+.+...          ..-..|.++++++++..|||++.. .+.|.+|+.....+
T Consensus       103 ~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~----------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D          103 ARGERTDYVEVFDPVTLLPTADIELPDAPRF----------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCC----------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECCCcccc----------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence                 467999997654   233 2211100          012479999999998899999974 78999999988765


Q ss_pred             EEecccCccCCCcccceeeeeccceee----EEEecCCcEEEEcC-C-CCc
Q 024317          194 SKSSQSGSALGAVSVWVLVSVLSCLVS----LVIGFVARPYIIRH-T-GRL  238 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~~~l~~p~g----ia~d~~g~lyVad~-~-g~~  238 (269)
                      ...-..   .+.        ....|.|    +++.++|.+.+.+. . |++
T Consensus       173 v~tI~v---~g~--------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          173 KRMLDV---PDC--------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEC---CSE--------EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             EEEEEC---CCc--------ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            543221   010        1123444    47778886666663 3 555

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.56  E-value=1.4e-05  Score=71.54  Aligned_cols=143  Identities=11%  Similarity=0.075  Sum_probs=101.4

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      ...|.++++++.+..+|++....+.|+.+|+   .+++.......              -..|.+++++++|. ||++..
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDR---KTKLEIRKTDK--------------IGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEET---TTTEEEEECCC--------------CSEEEEEEECTTSSEEEEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEEC---CCCcEEEEecC--------------CCCceEEEEcCCCCEEEEEEC
Confidence            3468999998877789999988899999985   35554433211              12478999999986 777775


Q ss_pred             -------CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          123 -------SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       123 -------~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                             .++.|+.++.. +. ......                -..|.++++++++..||++...+++|+.++.+....
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~  337 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGP----------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV  337 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEE----------------EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccC----------------CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence                   35688899964 33 222211                135789999998668999999999999999886654


Q ss_pred             EEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC
Q 024317          194 SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH  234 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~  234 (269)
                      ......               ...|.+++++++|+ +|++..
T Consensus       338 ~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          338 QKSIPV---------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEEEC---------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             EEEecC---------------CCCCCeEEEcCCCCEEEEEec
Confidence            332111               14477889998884 777764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.56  E-value=2.6e-05  Score=66.77  Aligned_cols=119  Identities=7%  Similarity=-0.013  Sum_probs=82.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC--
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK--  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~--  122 (269)
                      .|.++++++++..+|+++...+.|+++|+   .+++.......+..+        ..-..|.+++++++|+ +|+++.  
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~---~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~  103 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPV  103 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEEC---CCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEeccc
Confidence            49999998766689999999999999985   455554433211000        0112688999999995 999962  


Q ss_pred             ---------CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          123 ---------SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       123 ---------~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                               .+++|.+++....  ......                -..|.++++++++..||++   ++.|+.++....
T Consensus       104 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~  164 (337)
T 1pby_B          104 RLELTHFEVQPTRVALYDAETLSRRKAFEA----------------PRQITMLAWARDGSKLYGL---GRDLHVMDPEAG  164 (337)
T ss_dssp             EECSSCEEECCCEEEEEETTTTEEEEEEEC----------------CSSCCCEEECTTSSCEEEE---SSSEEEEETTTT
T ss_pred             ccccccccccCceEEEEECCCCcEEEEEeC----------------CCCcceeEECCCCCEEEEe---CCeEEEEECCCC
Confidence                     3589999997543  222111                1247889999986679998   367999998776


Q ss_pred             eEE
Q 024317          192 DCS  194 (269)
Q Consensus       192 ~~~  194 (269)
                      ...
T Consensus       165 ~~~  167 (337)
T 1pby_B          165 TLV  167 (337)
T ss_dssp             EEE
T ss_pred             cEe
Confidence            544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.51  E-value=1.1e-05  Score=71.76  Aligned_cols=78  Identities=9%  Similarity=0.064  Sum_probs=53.2

Q ss_pred             CCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      ..| ++++++++..+||++.         ..+.|..||.   .++++...+..+...       ...-..|.+|+++++|
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~---~t~~~~~~i~~~~~~-------~~~g~~p~~i~~spdg  119 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA---DKLTFEKEISLPPKR-------VQGLNYDGLFRQTTDG  119 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET---TTCCEEEEEEECTTB-------CCBCCCGGGEEECTTS
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC---cCCcEEEEEEcCccc-------cccCCCcceEEECCCC
Confidence            368 9999988889999984         2456999985   344443322111000       0112579999999999


Q ss_pred             C-EEEEeCC-CCEEEEEeCC
Q 024317          116 N-IYVADKS-NHVIRKITNL  133 (269)
Q Consensus       116 ~-lyVaD~~-n~~I~~~~~~  133 (269)
                      + |||++.. .+.|.+||.+
T Consensus       120 ~~l~v~n~~~~~~v~v~d~~  139 (361)
T 2oiz_A          120 KFIVLQNASPATSIGIVDVA  139 (361)
T ss_dssp             SEEEEEEESSSEEEEEEETT
T ss_pred             CEEEEECCCCCCeEEEEECC
Confidence            7 9999975 6788888854

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.48  E-value=4.3e-06  Score=71.48  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=92.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      +-.||.++  ++.||++....++|.++|+   .+|++.... -+.            -.+..|++++ .+.||+++..++
T Consensus        56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~---~Tgkv~~~~-l~~------------~~FgeGit~~-g~~Ly~ltw~~~  116 (268)
T 3nok_A           56 FTQGLVFH--QGHFFESTGHQGTLRQLSL---ESAQPVWME-RLG------------NIFAEGLASD-GERLYQLTWTEG  116 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEECCS---SCSSCSEEE-ECT------------TCCEEEEEEC-SSCEEEEESSSC
T ss_pred             ccceEEEE--CCEEEEEcCCCCEEEEEEC---CCCcEEeEE-CCC------------CcceeEEEEe-CCEEEEEEccCC
Confidence            34799994  6899999999999999986   456544432 210            1244678885 567999999999


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      ++.++|++..   .++.-.                 ..++||+.+  ++.||++| +.++|+.+++....+...-..+ .
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~-----------------~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~-~  175 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYS-----------------GEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVK-L  175 (268)
T ss_dssp             EEEEEETTTTEEEEEEECS-----------------SCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECE-E
T ss_pred             EEEEEECCcCcEEEEEeCC-----------------CceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeC-C
Confidence            9999997643   333211                 235778755  47999999 5889999998875443322221 0


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      .+.        .+..+..+... +|.||+..
T Consensus       176 ~g~--------~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          176 RGQ--------PVELINELECA-NGVIYANI  197 (268)
T ss_dssp             TTE--------ECCCEEEEEEE-TTEEEEEE
T ss_pred             CCc--------ccccccccEEe-CCEEEEEE
Confidence            110        22345566666 77888877

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.46  E-value=1.1e-05  Score=73.97  Aligned_cols=172  Identities=11%  Similarity=-0.053  Sum_probs=100.5

Q ss_pred             CCcceEEEecCCCeEEEEeCC------------------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSS------------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~------------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P  106 (269)
                      ..++++.+.|..+.+|+++++                  .++|..+|+.   ++++...+.-|..           =..|
T Consensus       188 ~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---~~k~~~tI~vg~~-----------g~~P  253 (462)
T 2ece_A          188 YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---KRKRIHSLTLGEE-----------NRMA  253 (462)
T ss_dssp             CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT---TTEEEEEEESCTT-----------EEEE
T ss_pred             cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC---CCcEeeEEecCCC-----------CCcc
Confidence            345667778777778888854                  8999999873   3554433322110           1257


Q ss_pred             ceEEE--cCCCC-EEEEeC-----CCCEEEEEeCC-cc---eEEecCCCCCCCCCCCcccc----ccccCceEEEEeCCC
Q 024317          107 KSFAV--DMKGN-IYVADK-----SNHVIRKITNL-GV---TTIAGGGSKKEGRADGPAQN----ASFSNDFELTFVPHI  170 (269)
Q Consensus       107 ~giav--d~~G~-lyVaD~-----~n~~I~~~~~~-g~---~~~~g~~~~~~~~~~~~~~~----~~l~~P~gia~~~~~  170 (269)
                      ..|.+  +++|. .||+..     ..+.|.++..+ |.   ..++......... .-....    +.-..|.+|.+++++
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~-~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG-NLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS-SCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc-cccccccccccCCCceeEEEECCCC
Confidence            77767  88887 999887     77788765532 43   1211111100000 000000    012469999999998


Q ss_pred             CEEEEEECCCCeEEEEECC-CCeEEEecccCccCCCcc---cceee-eeccceeeEEEecCC-cEEEEc
Q 024317          171 CALLISDHGNQLIRQINLK-PEDCSKSSQSGSALGAVS---VWVLV-SVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       171 g~LyVaD~~n~~I~~~~~~-~~~~~~~~~~g~~~g~~~---~~~~~-~~l~~p~gia~d~~g-~lyVad  233 (269)
                      ..|||++.+.+.|.+|+.. .......+..  ..|+..   ....+ .....|.+++++++| +|||++
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I--~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKV--KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEE--EeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8999999999999999974 2211111111  011000   00000 012469999999999 899998

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.40  E-value=5.6e-05  Score=67.74  Aligned_cols=80  Identities=6%  Similarity=-0.098  Sum_probs=53.9

Q ss_pred             CCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      ..| +|+++|++..+||++.         ..+.|.++|.   .+.++...+..+.      ......-..|.+++++++|
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~---~t~~~~~~i~~~~------~~~~~~g~~p~~~~~spDG  136 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP---VTFLPIADIELPD------APRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC---CCCcEEEEEECCC------ccccccCCCccceEECCCC
Confidence            468 9999998889999985         3567889975   2444333221110      0000012479999999999


Q ss_pred             C-EEEEeCC-CCEEEEEeCCcc
Q 024317          116 N-IYVADKS-NHVIRKITNLGV  135 (269)
Q Consensus       116 ~-lyVaD~~-n~~I~~~~~~g~  135 (269)
                      . |||++.. .+.|.++| +..
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCC
Confidence            8 9999875 68899999 543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.38  E-value=1.7e-05  Score=70.95  Aligned_cols=146  Identities=12%  Similarity=0.059  Sum_probs=103.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..|.++++++ ++.+|++....+.|+.+|+   .+++.......+.        .........+++++++|.+|++....
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~---~~g~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDI---NSGQTVRLSPPEK--------YKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEET---TTCCEEEECCCHH--------HHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEEC---CCCeEeeecCccc--------ccccCCceeEEEEcCCCEEEEEECCC
Confidence            3578899986 8999999988888999985   4566554321100        01123345679998899999999988


Q ss_pred             CEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +.|++++.+. .  ..+...                -..|.++++++++..+|++...++.|+.++............  
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--  252 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLT----------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--  252 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECS----------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--
T ss_pred             CEEEEEECCCceEEEEEcCC----------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--
Confidence            9999999654 3  333221                245789999999778999998889999999876654332211  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                        +           ..|.+++++++| .+|++.
T Consensus       253 --~-----------~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          253 --I-----------GLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             --C-----------SEEEEEEECTTSSEEEEEE
T ss_pred             --C-----------CCceEEEEcCCCCEEEEEE
Confidence              1           237788888888 566665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=2.6e-05  Score=65.88  Aligned_cols=142  Identities=14%  Similarity=-0.006  Sum_probs=93.4

Q ss_pred             CCCcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           44 EINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      -.+-+|+.++  ++.||++...  .+.|.++|+   .+|++.....-+.            -.+..|++++ .+.||+++
T Consensus        20 ~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~---~tgkv~~~~~l~~------------~~fgeGi~~~-~~~ly~lt   81 (243)
T 3mbr_X           20 TAFTEGLFYL--RGHLYESTGETGRSSVRKVDL---ETGRILQRAEVPP------------PYFGAGIVAW-RDRLIQLT   81 (243)
T ss_dssp             TCCEEEEEEE--TTEEEEEECCTTSCEEEEEET---TTCCEEEEEECCT------------TCCEEEEEEE-TTEEEEEE
T ss_pred             ccccccEEEE--CCEEEEECCCCCCceEEEEEC---CCCCEEEEEeCCC------------CcceeEEEEe-CCEEEEEE
Confidence            3467899995  4899999764  579999995   5777766542211            1244678885 57799999


Q ss_pred             CCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          122 KSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       122 ~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                      ..++++.++|++..   .++.-.                 ..++||+-  +++.||++|. .++|+.+++........-.
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~-----------------~~Gwglt~--dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYP-----------------GEGWALTS--DDSHLYMSDG-TAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECS-----------------SCCCEEEE--CSSCEEEECS-SSEEEEECTTTCCEEEEEE
T ss_pred             eeCCEEEEEECCcCcEEEEEeCC-----------------CCceEEee--CCCEEEEECC-CCeEEEEeCCCCeEEEEEE
Confidence            99999999997643   333211                 14577774  4479999995 8899999988754433222


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      .+ ..+.        .+..+..+... +|+||+..
T Consensus       142 V~-~~g~--------~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X          142 VT-AGGR--------PLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             CE-ETTE--------ECCCEEEEEEE-TTEEEEEE
T ss_pred             Ec-cCCc--------ccccceeeEEe-CCEEEEEE
Confidence            21 0010        22334455555 67888776

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.37  E-value=4.7e-06  Score=78.29  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             ccCCCCceEEEcC-CCCEEEEeCCC---------------------CEEEEEeCCc--------c-e--EEecCCCCCC-
Q 024317          101 ARFDKPKSFAVDM-KGNIYVADKSN---------------------HVIRKITNLG--------V-T--TIAGGGSKKE-  146 (269)
Q Consensus       101 ~~~~~P~giavd~-~G~lyVaD~~n---------------------~~I~~~~~~g--------~-~--~~~g~~~~~~-  146 (269)
                      ..+.+|++|++++ +|.+||+=+.|                     ++|.++..++        . .  .++|...... 
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            4578999999998 78999996542                     6788887533        1 1  2222221100 


Q ss_pred             ---CCCCCccccccccCceEEEEeCCCCEEEE-EECC-----------CCeEEEEECCCCeEEEecccCccCCCccccee
Q 024317          147 ---GRADGPAQNASFSNDFELTFVPHICALLI-SDHG-----------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVL  211 (269)
Q Consensus       147 ---~~~~~~~~~~~l~~P~gia~~~~~g~LyV-aD~~-----------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~  211 (269)
                         ...........|+.|++|+++++ |.||| +|..           ++.|++++++.+.+..+...  +         
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P---------  528 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--P---------  528 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--C---------
T ss_pred             ccccCccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--C---------
Confidence               00001112346999999999997 99999 8873           56899998866655554422  1         


Q ss_pred             eeeccceeeEEEecCC-cEEEEc
Q 024317          212 VSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       212 ~~~l~~p~gia~d~~g-~lyVad  233 (269)
                        ....|.|+++.+|+ .|||+-
T Consensus       529 --~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 --IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             --TTCEEEEEEECTTSSEEEEEE
T ss_pred             --CCccccCCEECCCCCEEEEEE
Confidence              22679999999999 788886

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.33  E-value=5.2e-06  Score=78.54  Aligned_cols=169  Identities=10%  Similarity=0.032  Sum_probs=102.0

Q ss_pred             CCCcceEEE-e-cCCCeEEEEe-----------------CCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCC
Q 024317           44 EINPHSVID-R-PGSSDLIVLD-----------------SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFD  104 (269)
Q Consensus        44 ~~~P~giav-~-~~~g~lyV~D-----------------~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~  104 (269)
                      ...|+|+++ + |+.+.+|++.                 ...+.+..+|.   .+.++...+.-+              .
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~---~t~~v~~qI~Vg--------------g  195 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA---DKWEVAWQVLVS--------------G  195 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET---TTTEEEEEEEES--------------S
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC---CCCeEEEEEEeC--------------C
Confidence            357999997 4 6789999995                 34457888874   344544443221              1


Q ss_pred             CCceEEEcCCCC-EEEEeCCC--------------CEEEEEeC--------Ccc-eEEecCCCCCCCCCC--Ccc---cc
Q 024317          105 KPKSFAVDMKGN-IYVADKSN--------------HVIRKITN--------LGV-TTIAGGGSKKEGRAD--GPA---QN  155 (269)
Q Consensus       105 ~P~giavd~~G~-lyVaD~~n--------------~~I~~~~~--------~g~-~~~~g~~~~~~~~~~--~~~---~~  155 (269)
                      .|.+++++++|. +|++.+..              ..|.+++.        +|+ ..+.+-  .-.....  +..   .-
T Consensus       196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V--~VID~~~~~~~~~~~~I  273 (595)
T 1fwx_A          196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV--KVVDGRKEASSLFTRYI  273 (595)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE--EEEECSGGGCCSSEEEE
T ss_pred             CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE--EEEeCcccCCceeEEEE
Confidence            689999999888 89998765              44666662        343 222110  0000000  000   01


Q ss_pred             ccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          156 ASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       156 ~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                      ..=..|.|+.++|++..+||++...++|.+|+.+..... +... .... ......-..-.+|..++++++|++|++..
T Consensus       274 pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~-l~~~-~~v~~~v~vG~gP~h~aF~~dG~aY~t~~  349 (595)
T 1fwx_A          274 PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN-ADPR-SAVVAEPELGLGPLHTAFDGRGNAYTSLF  349 (595)
T ss_dssp             EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSC-CCGG-GGEEECCBCCSCEEEEEECTTSEEEEEET
T ss_pred             ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccc-cCcc-cceEEEcCCCCCcceEEECCCCeEEEEEe
Confidence            112579999999998899999999999999998743110 0000 0000 00000000115699999999999999983

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.32  E-value=5e-05  Score=64.97  Aligned_cols=137  Identities=13%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             eEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCC-cc
Q 024317           58 DLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNL-GV  135 (269)
Q Consensus        58 ~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~-g~  135 (269)
                      .++|+....+.|..+|.   .++++......+.           ....|.+++++++|. +|+++...++|.+++.. +.
T Consensus         2 ~~~v~~~~~~~v~~~d~---~~~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            2 DYILAPARPDKLVVIDT---EKMAVDKVITIAD-----------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEET---TTTEEEEEEECTT-----------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEcCCCCeEEEEEC---CCCcEEEEEEcCC-----------CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence            46777777888888874   4555544332110           001488999999995 89999988999999964 44


Q ss_pred             -eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC-----------CCCeEEEEECCCCeEEEecccCccC
Q 024317          136 -TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH-----------GNQLIRQINLKPEDCSKSSQSGSAL  203 (269)
Q Consensus       136 -~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~-----------~n~~I~~~~~~~~~~~~~~~~g~~~  203 (269)
                       ......+...          ..-..|.++++++++..||+++.           .++.|++++............    
T Consensus        68 ~~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----  133 (337)
T 1pby_B           68 TLGRIDLSTPE----------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----  133 (337)
T ss_dssp             EEEEEECCBTT----------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----
T ss_pred             eEeeEEcCCcc----------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----
Confidence             2212111000          00125889999998669999962           358899999877654332211    


Q ss_pred             CCcccceeeeeccceeeEEEecCCc-EEEEc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR  233 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~-lyVad  233 (269)
                      +           ..|.+++++++|+ +|+++
T Consensus       134 ~-----------~~~~~~~~s~dg~~l~~~~  153 (337)
T 1pby_B          134 P-----------RQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             C-----------SSCCCEEECTTSSCEEEES
T ss_pred             C-----------CCcceeEECCCCCEEEEeC
Confidence            1           2366777888874 77774

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.32  E-value=1.7e-05  Score=67.65  Aligned_cols=139  Identities=14%  Similarity=0.023  Sum_probs=90.4

Q ss_pred             cceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      -.|+.++  ++.||++...  .++|.++|+   .+|++.....-+            .-.+..||+++ .+.||+++..+
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~---~Tgkv~~~~~l~------------~~~FgeGit~~-g~~ly~ltw~~  106 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDI---ESGKTLQQIELG------------KRYFGEGISDW-KDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECT---TTCCEEEEEECC------------TTCCEEEEEEE-TTEEEEEESSS
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEEC---CCCcEEEEEecC------------CccceeEEEEe-CCEEEEEEeeC
Confidence            3899995  5899999864  459999985   577766554221            01244678885 56799999999


Q ss_pred             CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +++.++|++..   .++.-.                 ..++|++.  +++.||++|. .++|+.+++....+...-..+ 
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~-----------------~eG~glt~--dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~-  165 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYD-----------------GEGWGLTH--NDQYLIMSDG-TPVLRFLDPESLTPVRTITVT-  165 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECS-----------------SCCCCEEE--CSSCEEECCS-SSEEEEECTTTCSEEEEEECE-
T ss_pred             CEEEEEECccCcEEEEEECC-----------------CCceEEec--CCCEEEEECC-CCeEEEEcCCCCeEEEEEEec-
Confidence            99999997643   333211                 13467774  4479999995 789999999865443322110 


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      ..+.        .+..++.+... +|.||+..
T Consensus       166 ~~g~--------~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          166 AHGE--------ELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             ETTE--------ECCCEEEEEEE-TTEEEEEE
T ss_pred             cCCc--------cccccceeEEE-CCEEEEEE
Confidence            0010        12334455555 67888877

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.30  E-value=2.7e-05  Score=69.85  Aligned_cols=77  Identities=3%  Similarity=-0.194  Sum_probs=54.0

Q ss_pred             CCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEcCC
Q 024317           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMK  114 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd~~  114 (269)
                      ..| +++++++...+||+++         ..+.|.+||+   .++++..-+.-+ ...       ......|.+++++++
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~---~T~~vv~~I~v~~~~~-------~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP---VTFLPIADIELPDAPR-------FSVGPRVHIIGNCAS  134 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT---TTCCEEEEEEETTSCS-------CCBSCCTTSEEECTT
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC---CCCCEEEEEECCCccc-------cccCCCcceEEEcCC
Confidence            359 9999998889999984         4688999985   455544332111 000       011257999999999


Q ss_pred             CC-EEEEeCC-CCEEEE--EeC
Q 024317          115 GN-IYVADKS-NHVIRK--ITN  132 (269)
Q Consensus       115 G~-lyVaD~~-n~~I~~--~~~  132 (269)
                      |. +||++.. .+.|.+  +|.
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~  156 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTT
T ss_pred             CCEEEEEccCCCCeEEEEEEch
Confidence            96 9999975 677777  765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.28  E-value=0.00017  Score=62.05  Aligned_cols=118  Identities=12%  Similarity=0.140  Sum_probs=77.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS-  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~-  123 (269)
                      .|.++++++++..+|++...++.|+++|+   .+++.......+..       ....-..|.+++++++|. ||++... 
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~---~t~~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~  113 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDL---DTCKNTFHANLSSV-------PGEVGRSMYSFAISPDGKEVYATVNPT  113 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEET---TTTEEEEEEESCCS-------TTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeC---CCCcEEEEEEcccc-------cccccccccceEECCCCCEEEEEcccc
Confidence            59999998755679999998999999985   45655443321100       000123588999999997 8888843 


Q ss_pred             ----------CCEEEEEeCCc-c-e---EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          124 ----------NHVIRKITNLG-V-T---TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       124 ----------n~~I~~~~~~g-~-~---~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                                .++|.+++... . .   .....                -..+.+++++++ +.||+++   +.|++++.
T Consensus       114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~s~d-g~l~~~~---~~i~~~d~  173 (349)
T 1jmx_B          114 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----------------PRQVYLMRAADD-GSLYVAG---PDIYKMDV  173 (349)
T ss_dssp             EECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----------------CSSCCCEEECTT-SCEEEES---SSEEEECT
T ss_pred             cccccccccCCCeEEEEECCCccccceeeeccC----------------CCcccceeECCC-CcEEEcc---CcEEEEeC
Confidence                      57899998543 2 1   11110                124678999998 5588864   34999998


Q ss_pred             CCCeE
Q 024317          189 KPEDC  193 (269)
Q Consensus       189 ~~~~~  193 (269)
                      .....
T Consensus       174 ~~~~~  178 (349)
T 1jmx_B          174 KTGKY  178 (349)
T ss_dssp             TTCCE
T ss_pred             CCCce
Confidence            66543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.28  E-value=6.5e-05  Score=67.28  Aligned_cols=113  Identities=10%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             cCCCeEEEEeC-CCC---EEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC-----
Q 024317           54 PGSSDLIVLDS-SRS---AFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS-----  123 (269)
Q Consensus        54 ~~~g~lyV~D~-~~~---~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~-----  123 (269)
                      +....+||+|. +.+   .|.++|.   .++++...+..|              ..| +|+++++|. +||++..     
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~---~t~~~~~~i~~g--------------~~p-~i~~spDg~~lyv~n~~~~~~~   91 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDA---GSGSILGHVNGG--------------FLP-NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEEC---CCCeEEEEecCC--------------CCC-CeEECCCCCEEEEEeccccccc
Confidence            34577999997 554   8899985   356554333221              257 999999997 9999852     


Q ss_pred             ----CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEE
Q 024317          124 ----NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCS  194 (269)
Q Consensus       124 ----n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~  194 (269)
                          .+.|.+||....   .++.-.+...         ...-..|.+++++|++..|||+... .+.|..|+ ....+.
T Consensus        92 rg~~~~~v~viD~~t~~~~~~i~~~~~~~---------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H           92 KGKRTDYVEVFDPVTFLPIADIELPDAPR---------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             cCCCCCeEEEEECCCCcEEEEEECCCccc---------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence                467899997542   2221100000         0002468999999998899999875 68899999 766544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.26  E-value=5.1e-05  Score=67.41  Aligned_cols=156  Identities=14%  Similarity=0.094  Sum_probs=96.3

Q ss_pred             CCCcceEEE--ecCCC--eEEEEeCCCCEEEEEecCCCCCccEE----EEEcCCcccCCCCCcccccCCCCceEEEcC-C
Q 024317           44 EINPHSVID--RPGSS--DLIVLDSSRSAFYTLSFPLSEESVVK----RLAGDGVQGYSDGEPGSARFDKPKSFAVDM-K  114 (269)
Q Consensus        44 ~~~P~giav--~~~~g--~lyV~D~~~~~I~~~dl~~~~~g~~~----~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~  114 (269)
                      +..|+|+|+  ++..+  .+||++.. +++..|++....+|++.    .-+..              -..|.++++|+ .
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~l--------------gsq~EgcvvDd~~  191 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKM--------------NSQTEGMAADDEY  191 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEEC--------------SSCEEEEEEETTT
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecC--------------CCCcceEEEcCCC
Confidence            478999999  65556  47888875 78888776433444322    11111              12689999996 6


Q ss_pred             CCEEEEeCCCCEEEEEe--CCc--c-eEEecCCCCCCCCCCCcccccccc-CceEEEEeCCC---CEEEEEECCCCeEEE
Q 024317          115 GNIYVADKSNHVIRKIT--NLG--V-TTIAGGGSKKEGRADGPAQNASFS-NDFELTFVPHI---CALLISDHGNQLIRQ  185 (269)
Q Consensus       115 G~lyVaD~~n~~I~~~~--~~g--~-~~~~g~~~~~~~~~~~~~~~~~l~-~P~gia~~~~~---g~LyVaD~~n~~I~~  185 (269)
                      |.|||++.. .-|++++  +++  . ..+.-.+.            ..|. .|.||++.+..   +.|+|++.+++...+
T Consensus       192 g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~------------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          192 GRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADG------------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             TEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSS------------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CeEEEeccc-ceEEEEeCCcCCCCCceEEEEecC------------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            889999986 4599999  444  1 22221111            1143 68999996432   589999999999999


Q ss_pred             EECCC--CeEEEecccCcc-----CCCcccceeeeec--cceeeEEEecCC
Q 024317          186 INLKP--EDCSKSSQSGSA-----LGAVSVWVLVSVL--SCLVSLVIGFVA  227 (269)
Q Consensus       186 ~~~~~--~~~~~~~~~g~~-----~g~~~~~~~~~~l--~~p~gia~d~~g  227 (269)
                      |+.++  ..+..+.....+     ............+  ..|.||.+-.||
T Consensus       259 ydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg  309 (355)
T 3amr_A          259 YDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDG  309 (355)
T ss_dssp             EESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEES
T ss_pred             EECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecC
Confidence            99964  344444321111     1122222222223  368888887777

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.23  E-value=0.00017  Score=64.79  Aligned_cols=158  Identities=8%  Similarity=0.074  Sum_probs=101.5

Q ss_pred             CcceEEEe---cC----CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCC--------CCcccccCCCCceEE
Q 024317           46 NPHSVIDR---PG----SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD--------GEPGSARFDKPKSFA  110 (269)
Q Consensus        46 ~P~giav~---~~----~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~d--------g~~~~~~~~~P~gia  110 (269)
                      .-.+|+|+   +.    ++.+||+|.+...|.++|+   .+|+..++... . -+.+        |... .....-.||+
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl---~~~~swRv~~~-~-~~pd~~~~~~i~G~~~-~~~~Gi~gIa  226 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDH---KKQDSWNVTHP-T-FKAERPTKFDYGGKEY-EFKAGIFGIT  226 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEET---TTTEEEEEECG-G-GSCCSCEEEEETTEEE-EECCCEEEEE
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEEC---CCCcEEEEccC-C-CccccCcceEECCEEe-EeccCceEEE
Confidence            45678886   11    5789999999999999997   45554454421 1 0111        1100 1123567899


Q ss_pred             EcCC----C-CEEEEeCCCCEEEEEeC----Cc---c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          111 VDMK----G-NIYVADKSNHVIRKITN----LG---V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       111 vd~~----G-~lyVaD~~n~~I~~~~~----~g---~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      ++++    + .||+.-....++..+..    +.   . ....|...             .-....++++|+..|.||+++
T Consensus       227 Lsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg-------------~~s~~~~~~~D~~~G~ly~~~  293 (381)
T 3q6k_A          227 LGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG-------------KYNDAIALAYDPKTKVIFFAE  293 (381)
T ss_dssp             ECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC-------------TTCCEEEEEECTTTCEEEEEE
T ss_pred             ecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC-------------CCCCcceEEEeCCCCeEEEEe
Confidence            9886    4 49999988889998862    11   1 22222110             011223677875569999999


Q ss_pred             CCCCeEEEEECCC-Ce----EEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCC
Q 024317          178 HGNQLIRQINLKP-ED----CSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       178 ~~n~~I~~~~~~~-~~----~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                      ...+.|.+++.++ ..    .......             ..+..|.++++|.+|.|||..+.
T Consensus       294 ~~~~aI~~w~~~~~~~~~~n~~~l~~d-------------~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          294 ANTKQVSCWNTQKMPLRMKNTDVVYTS-------------SRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             SSSSEEEEEETTSCSBCGGGEEEEEEC-------------TTCCSEEEEEECTTSCEEEEECS
T ss_pred             ccCCeEEEEeCCCCccccCceEEEEEC-------------CCccccCeEEECCCCeEEEEECc
Confidence            9999999999887 32    1222111             14577999999999999999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.21  E-value=0.00021  Score=67.64  Aligned_cols=165  Identities=7%  Similarity=-0.074  Sum_probs=102.7

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc----CCCC-EE
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGN-IY  118 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd----~~G~-ly  118 (269)
                      ...|+++++++++..+||++. .+.|.+||+. ..++++...+..|              ..|.+|+++    ++|. +|
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~-~~t~~~v~~i~~G--------------~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGR-DGKVNMIDLW-MKEPTTVAEIKIG--------------SEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEET-TSEEEEEETT-SSSCCEEEEEECC--------------SEEEEEEECCSTTCTTTEEE
T ss_pred             CCCccceEECCCCCEEEEEcC-CCeEEEEECC-CCCCcEeEEEecC--------------CCCceeEEccccCCCCCEEE
Confidence            346999999987778999984 5789999862 1244443332222              268999999    5886 99


Q ss_pred             EEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          119 VADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       119 VaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      |+++..+.|.++|....   .++.-.+. ..... ..   ..-..+.+|..+++...++|+-...++|+.++........
T Consensus       260 v~n~~~~~v~ViD~~t~~~~~~i~~~~~-~~~~~-~~---~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~  334 (567)
T 1qks_A          260 AGAYWPPQYVIMDGETLEPKKIQSTRGM-TYDEQ-EY---HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  334 (567)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEE-CTTTC-CE---ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEecccc-ccccc-cc---cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce
Confidence            99999999999996443   22321110 00000 00   0011456788888767788888888999999976542211


Q ss_pred             ecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc-CCCCccccc
Q 024317          196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR-HTGRLDPPL  242 (269)
Q Consensus       196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad-~~g~~~~~~  242 (269)
                      ....  .           .-..|+++.++++|+ +||++ ..+.+...+
T Consensus       335 v~~i--~-----------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD  370 (567)
T 1qks_A          335 TTEI--S-----------AERFLHDGGLDGSHRYFITAANARNKLVVID  370 (567)
T ss_dssp             EEEE--E-----------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             eeee--e-----------ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence            1111  0           014578889999995 56766 344554433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.21  E-value=3e-05  Score=68.87  Aligned_cols=112  Identities=12%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             CCeEEEEeCC-----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC-------
Q 024317           56 SSDLIVLDSS-----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-------  122 (269)
Q Consensus        56 ~g~lyV~D~~-----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~-------  122 (269)
                      ...+||+|.+     .+.|+++|.   .++++...+..+              ..| +|+++++|. +||++.       
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~---~t~~~~~~i~~g--------------~~p-~i~~spdg~~lyv~~~~~~~~~~   76 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDY---TNGKFLGMVPTA--------------FNG-HVQVSNDGKKIYTMTTYHERITR   76 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEET---TTCCEEEEEECC--------------EEE-EEEECTTSSEEEEEEEEETTSSS
T ss_pred             CCEEEEECCCCCccccCeEEEEEC---CCCeEEEEecCC--------------CCC-ceEECCCCCEEEEEEeccccccc
Confidence            4689999864     458999984   456654433221              257 999999997 999984       


Q ss_pred             --CCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeEEE
Q 024317          123 --SNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDCSK  195 (269)
Q Consensus       123 --~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~~~  195 (269)
                        ..+.|.+||... +  .++.-....          ...-..|.+|+++|++..|||++.. .+.|.+|+.+...+..
T Consensus        77 g~~~~~v~v~d~~t~~~~~~i~~~~~~----------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~  145 (361)
T 2oiz_A           77 GKRSDVVEVWDADKLTFEKEISLPPKR----------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE  145 (361)
T ss_dssp             SCEEEEEEEEETTTCCEEEEEEECTTB----------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEECcCCcEEEEEEcCccc----------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence              245799999653 2  233211000          0012579999999998899999975 6899999998876543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.19  E-value=7.3e-05  Score=68.35  Aligned_cols=80  Identities=6%  Similarity=-0.155  Sum_probs=57.1

Q ss_pred             CCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEEcCC-cccCCCCCcccccCCCCceEEEcCC
Q 024317           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMK  114 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~g~g-~~g~~dg~~~~~~~~~P~giavd~~  114 (269)
                      ..| +|++++++..+||+++         ..+.|.+||.   .++++...+--+ ...       ......|.+++++++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~---~t~~vv~~I~v~g~~r-------~~~g~~P~~~~~spD  187 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP---VTFLPIADIELPDAPR-------FLVGTYQWMNALTPD  187 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCCC-------CCBSCCGGGSEECTT
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC---CCCcEEEEEECCCccc-------cccCCCcceEEEcCC
Confidence            469 9999998889999986         3567999984   455544332111 000       001257999999999


Q ss_pred             CC-EEEEeCC-CCEEEEEeCCcc
Q 024317          115 GN-IYVADKS-NHVIRKITNLGV  135 (269)
Q Consensus       115 G~-lyVaD~~-n~~I~~~~~~g~  135 (269)
                      |. +||++.. .+.|.++|....
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTT
T ss_pred             CCEEEEEecCCCCeEEEEECCCC
Confidence            97 9999975 789999997554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.16  E-value=8.9e-05  Score=69.70  Aligned_cols=106  Identities=7%  Similarity=-0.064  Sum_probs=80.0

Q ss_pred             EecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEE
Q 024317           52 DRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKI  130 (269)
Q Consensus        52 v~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~  130 (269)
                      +++ ++.+||+....+.|..+|.   .++++...+..+             . .|.+++++++|+ ||+++.. +.|.++
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~---~t~~~~~~i~~g-------------~-~~~~v~~spdg~~l~v~~~d-~~V~v~  205 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDG---DSKKIVKVIDTG-------------Y-AVHISRMSASGRYLLVIGRD-ARIDMI  205 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEET---TTCCEEEEEECS-------------T-TEEEEEECTTSCEEEEEETT-SEEEEE
T ss_pred             cCC-CCEEEEEEcCCCeEEEEEC---CCceEEEEEecC-------------c-ccceEEECCCCCEEEEECCC-CeEEEE
Confidence            554 7899999999999999984   466655443221             1 378999999997 9999986 899999


Q ss_pred             eCC---cc--eEEecCCCCCCCCCCCccccccccCceEEEEeC----CCCEEEEEECCCCeEEEEECCCCeE
Q 024317          131 TNL---GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVP----HICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       131 ~~~---g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~----~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      |.+   +.  .++..                 -..|.+++++|    ++..|||++...+.|..++......
T Consensus       206 D~~~~t~~~~~~i~~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          206 DLWAKEPTKVAEIKI-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             ETTSSSCEEEEEEEC-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             ECcCCCCcEEEEEec-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            983   32  22221                 13589999999    8789999998888999999766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.14  E-value=7.7e-05  Score=68.93  Aligned_cols=182  Identities=14%  Similarity=0.088  Sum_probs=102.2

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecCC-CeEEEEeCCCCEEEEEecCCCCCccE--EEEEcCCcccCCCCCcccccCCCC
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPGS-SDLIVLDSSRSAFYTLSFPLSEESVV--KRLAGDGVQGYSDGEPGSARFDKP  106 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~~-g~lyV~D~~~~~I~~~dl~~~~~g~~--~~~~g~g~~g~~dg~~~~~~~~~P  106 (269)
                      .|+.++.+.++   |..|.+|++.|++ +++||++. .++|++++    .+|..  ..+.+... .+..+. .......+
T Consensus         2 ~gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~----~~g~~~~~~~~~~~~-~~~~g~-~~~~e~Gl   71 (463)
T 2wg3_C            2 NCFCIQEVVSG---LRQPVGALHSGDGSQRLFILEK-EGYVKILT----PEGEIFKEPYLDIHK-LVQSGI-KGGDERGL   71 (463)
T ss_dssp             CCEEEEEEEEE---ESSEEEEECCSSSSCCEEEEET-TTEEEEEC----TTSCBCSSCSEECTT-TBCCCC-SSSCCCSE
T ss_pred             CceEEEEeccC---CCCceEEEECCCCCeEEEEEeC-CceEEEEe----CCCCeeeeeecCCcc-eeccCc-cccCCCcc
Confidence            46677777653   6799999997643 25999997 57899884    33321  11111100 011110 00112356


Q ss_pred             ceEEEcCC----CCEEEEeCCC------------CEEEEEeCCc---------c-eEEecCCCCCCCCCCCccccccccC
Q 024317          107 KSFAVDMK----GNIYVADKSN------------HVIRKITNLG---------V-TTIAGGGSKKEGRADGPAQNASFSN  160 (269)
Q Consensus       107 ~giavd~~----G~lyVaD~~n------------~~I~~~~~~g---------~-~~~~g~~~~~~~~~~~~~~~~~l~~  160 (269)
                      .||+++++    +.|||+-+..            ++|.++....         . ..+.....           ...-..
T Consensus        72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-----------~~~~H~  140 (463)
T 2wg3_C           72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-----------LHRKHL  140 (463)
T ss_dssp             EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-----------SSSSSC
T ss_pred             eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-----------CCCccc
Confidence            79999985    8899986421            4777776321         1 22322110           011244


Q ss_pred             ceEEEEeCCCCEEEEEEC--C---------------CCeEEEEECCCCeE-----EEecccCccC---CCcccceeeeec
Q 024317          161 DFELTFVPHICALLISDH--G---------------NQLIRQINLKPEDC-----SKSSQSGSAL---GAVSVWVLVSVL  215 (269)
Q Consensus       161 P~gia~~~~~g~LyVaD~--~---------------n~~I~~~~~~~~~~-----~~~~~~g~~~---g~~~~~~~~~~l  215 (269)
                      -..|+++|+ |.|||+-.  +               .+.|+|+++++...     .-...+ +..   .....|+.  .+
T Consensus       141 g~~l~fgpD-G~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNP-f~~~~~~~~eI~a~--G~  216 (463)
T 2wg3_C          141 GGQLLFGPD-GFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNP-HFNSTNQPPEVFAH--GL  216 (463)
T ss_dssp             EEEEEECTT-SCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTST-TTTCSSSCTTEEEE--CC
T ss_pred             CCcEeECCC-CcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCC-CcCCCCCcccEEEE--CC
Confidence            568999998 89999843  2               35699999887421     000111 010   12234443  35


Q ss_pred             cceeeEEEecC-----C--cEEEEcCCC
Q 024317          216 SCLVSLVIGFV-----A--RPYIIRHTG  236 (269)
Q Consensus       216 ~~p~gia~d~~-----g--~lyVad~~g  236 (269)
                      -.|.|+++|+.     |  .+|++|..|
T Consensus       217 RNp~gla~dp~tg~~~G~l~~~~~D~~G  244 (463)
T 2wg3_C          217 HDPGRCAVDRHPTDININLTILCSDSNG  244 (463)
T ss_dssp             SSCCBEEEESSCSSTTCSEEEEEECC--
T ss_pred             CCcceEEECCCCCCcccceEEEecccCC
Confidence            77999999997     5  577788633

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.14  E-value=4.2e-05  Score=68.61  Aligned_cols=107  Identities=7%  Similarity=-0.074  Sum_probs=76.0

Q ss_pred             CCeEEEEeCCCC----EEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC--------
Q 024317           56 SSDLIVLDSSRS----AFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK--------  122 (269)
Q Consensus        56 ~g~lyV~D~~~~----~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~--------  122 (269)
                      ...+||++...+    +|..+|.   .++++...+..|              ..| +++++++|. +||+++        
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~---~t~~v~~~i~vG--------------~~P-~i~~spDg~~lyVan~~~~r~~~G   92 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCA---GCGVTLGHSLGA--------------FLS-LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEET---TTTEEEEEEEEC--------------TTC-EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCeEEEECCccCCccceEEEEEC---CCCeEEEEEeCC--------------CCC-ceEECCCCCEEEEEcccccccccC
Confidence            478999999888    8999985   455554443222              258 999999887 999994        


Q ss_pred             -CCCEEEEEeCCcc---eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEE--EECCC
Q 024317          123 -SNHVIRKITNLGV---TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQ--INLKP  190 (269)
Q Consensus       123 -~n~~I~~~~~~g~---~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~--~~~~~  190 (269)
                       ..+.|.+||....   .++. +.+. .         ......|.+++++|++..|||++.. .+.|..  ++...
T Consensus        93 ~~~~~VsviD~~T~~vv~~I~v~~~~-~---------~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           93 KRTDYVEVFDPVTFLPIADIELPDAP-R---------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSC-S---------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCcc-c---------cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence             3678999997543   3332 2110 0         0113579999999998899999975 577888  77655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.10  E-value=0.00016  Score=62.02  Aligned_cols=101  Identities=14%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ....++++++|+||++.. ++.+.+++++|. . .+...                -..+..++++++ ++|||+.. ++.
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~----------------~~~~~~~~~~~~-g~l~v~t~-~gg  276 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTG----------------KRIESSPVIGNT-DTIYFGSY-DGH  276 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECS----------------SCCCSCCEECTT-SCEEEECT-TCE
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCC----------------CCccccceEcCC-CeEEEecC-CCC
Confidence            456789999999999986 568888888776 2 22111                012334566655 89999876 457


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                      |.+++.++.........    +           .....+++|.+|+|||+..+|.+.
T Consensus       277 l~~~d~~g~~~~~~~~~----~-----------~~~~~~~~d~~g~l~~gt~~G~~~  318 (330)
T 3hxj_A          277 LYAINPDGTEKWNFETG----S-----------WIIATPVIDENGTIYFGTRNGKFY  318 (330)
T ss_dssp             EEEECTTSCEEEEEECS----S-----------CCCSCCEECTTCCEEEECTTSCEE
T ss_pred             EEEECCCCcEEEEEEcC----C-----------ccccceEEcCCCEEEEEcCCCeEE
Confidence            99999876655443221    1           224467888999999999887665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.07  E-value=0.00025  Score=67.13  Aligned_cols=104  Identities=8%  Similarity=-0.065  Sum_probs=78.9

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCC-
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNL-  133 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~-  133 (269)
                      .+.+||+....+.|..+|.   .++++...+..|              ..|.+++++++|. +||++. .+.|.+||.. 
T Consensus       166 ~~~~~V~~~~~~~V~viD~---~t~~v~~~i~~g--------------~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~  227 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDG---STYEIKTVLDTG--------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM  227 (567)
T ss_dssp             GGEEEEEETTTTEEEEEET---TTCCEEEEEECS--------------SCEEEEEECTTSCEEEEEET-TSEEEEEETTS
T ss_pred             CceEEEEeCCCCeEEEEEC---CCCeEEEEEeCC--------------CCccceEECCCCCEEEEEcC-CCeEEEEECCC
Confidence            5789999999999999984   466655544332              2688999999998 899985 6799999984 


Q ss_pred             --cc--eEEecCCCCCCCCCCCccccccccCceEEEEe----CCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          134 --GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFV----PHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       134 --g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~----~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                        ++  .++..                 -..|.+|+++    |++..+||++...+.|..++.......
T Consensus       228 ~t~~~v~~i~~-----------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          228 KEPTTVAEIKI-----------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             SSCCEEEEEEC-----------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             CCCcEeEEEec-----------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence              22  22211                 1358999999    587799999999999999997665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.05  E-value=0.00027  Score=63.71  Aligned_cols=80  Identities=9%  Similarity=-0.050  Sum_probs=56.1

Q ss_pred             CCCcceEEEecCCCeEEEEeC---------CCCEEEEEecCCCCCccEEEEE--cCCcccCCCCCcccccCCCCceEEEc
Q 024317           44 EINPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLA--GDGVQGYSDGEPGSARFDKPKSFAVD  112 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~---------~~~~I~~~dl~~~~~g~~~~~~--g~g~~g~~dg~~~~~~~~~P~giavd  112 (269)
                      ...|. ++++|++..+||+++         ..+.|.+||.   .++++...+  +.|..        ...-..|.+++++
T Consensus        78 G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~---~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~s  145 (386)
T 3sjl_D           78 GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP---VTLLPTADIELPDAPR--------FLVGTYPWMTSLT  145 (386)
T ss_dssp             CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCCC--------CCBSCCGGGEEEC
T ss_pred             CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC---CCCeEEEEEECCCccc--------cccCCCCceEEEc
Confidence            34585 999988889999985         2467999984   455544332  21110        0112489999999


Q ss_pred             CCCC-EEEEeCC-CCEEEEEeCCcc
Q 024317          113 MKGN-IYVADKS-NHVIRKITNLGV  135 (269)
Q Consensus       113 ~~G~-lyVaD~~-n~~I~~~~~~g~  135 (269)
                      ++|. +||++.. .+.|.++|....
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCC
Confidence            9998 9999974 789999996543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.02  E-value=0.0011  Score=59.47  Aligned_cols=168  Identities=11%  Similarity=0.019  Sum_probs=101.2

Q ss_pred             ccCCCCcceEEEecCCCeEEEEeCCC---------------CEEEEEecCCCCC--ccEEEEEcCCcccCCCCCcccccC
Q 024317           41 HQLEINPHSVIDRPGSSDLIVLDSSR---------------SAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARF  103 (269)
Q Consensus        41 ~~~~~~P~giav~~~~g~lyV~D~~~---------------~~I~~~dl~~~~~--g~~~~~~g~g~~g~~dg~~~~~~~  103 (269)
                      ...|.+..++.++ ..++|||.|++.               -+|..+|+  ..+  ..+.++. -...-.     .  .-
T Consensus        83 ~~~lvsV~~v~iD-~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL--~t~~~~li~~y~-~p~~~~-----~--~~  151 (381)
T 3q6k_A           83 GKELTSIYQPVID-DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDL--KQPNYPEVVRYY-FPTRLV-----E--KP  151 (381)
T ss_dssp             SCSSSCEEEEEEC-TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEES--SSTTCCEEEEEE-CCGGGC-----C--CG
T ss_pred             ccceEEeeEEEEc-CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEEC--CCCCceeEEEEE-CCHHhc-----c--cC
Confidence            3468889999995 699999999862               26888988  344  3344432 211000     0  01


Q ss_pred             CCCceEEEc-C-------CCCEEEEeCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCc-cccc-cc---cCceEEEEeC
Q 024317          104 DKPKSFAVD-M-------KGNIYVADKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGP-AQNA-SF---SNDFELTFVP  168 (269)
Q Consensus       104 ~~P~giavd-~-------~G~lyVaD~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~-~~~~-~l---~~P~gia~~~  168 (269)
                      ..-.+|+|| .       ++.+||+|.....|.++|. +|+ .++.... ..+. ..+. ...+ .|   ..-.|||++|
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp  229 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-FKAE-RPTKFDYGGKEYEFKAGIFGITLGD  229 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG-GSCC-SCEEEEETTEEEEECCCEEEEEECC
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC-Cccc-cCcceEECCEEeEeccCceEEEecC
Confidence            244679998 2       3559999999999999995 455 4444211 1111 0000 0000 11   3568999999


Q ss_pred             C----CCEEEEEECCCCeEEEEECC---CC----eEEEecccCccCCCcccceeeeeccceeeEEEe-cCCcEEEEcC
Q 024317          169 H----ICALLISDHGNQLIRQINLK---PE----DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIG-FVARPYIIRH  234 (269)
Q Consensus       169 ~----~g~LyVaD~~n~~I~~~~~~---~~----~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d-~~g~lyVad~  234 (269)
                      +    +..||+.-..+.+++++...   ..    .+...+..+             ..+...++++| .+|+||+++.
T Consensus       230 ~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg-------------~~s~~~~~~~D~~~G~ly~~~~  294 (381)
T 3q6k_A          230 RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG-------------KYNDAIALAYDPKTKVIFFAEA  294 (381)
T ss_dssp             CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC-------------TTCCEEEEEECTTTCEEEEEES
T ss_pred             CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC-------------CCCCcceEEEeCCCCeEEEEec
Confidence            7    67999999998899999732   11    111111110             00223467887 8899999993

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.0008  Score=59.68  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecC---CC----eEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCccc
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPG---SS----DLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGS  100 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~---~g----~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~  100 (269)
                      +|.++..+.     ...+++|.+-+.   +|    .+|+++..  +++|..|+++. .++.+..+ +...      .+..
T Consensus        58 ~G~~l~~~~-----~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp-~~~~l~~i-~~~~------~pv~  124 (355)
T 3amr_A           58 DGKMLHSYN-----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG-KNGTLQSM-TDPD------HPIA  124 (355)
T ss_dssp             TSCEEEEEC-----CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT-TTCCEEEC-SCTT------SCEE
T ss_pred             CCcEEEEcc-----CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC-CCCceeec-cccc------cCcC
Confidence            455555542     235677776431   11    46999998  99998886631 23444443 1100      0111


Q ss_pred             ccCCCCceEEE--cCC-CC--EEEEeCCCCEEEEEe----CCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC
Q 024317          101 ARFDKPKSFAV--DMK-GN--IYVADKSNHVIRKIT----NLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH  169 (269)
Q Consensus       101 ~~~~~P~giav--d~~-G~--lyVaD~~n~~I~~~~----~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~  169 (269)
                      ..+..|.|+|+  ++. |.  +||.+.. +++..+.    .+|.  ......-.             .-..|.++++|++
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~-------------lgsq~EgcvvDd~  190 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFK-------------MNSQTEGMAADDE  190 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEE-------------CSSCEEEEEEETT
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEec-------------CCCCcceEEEcCC
Confidence            33579999999  774 53  8888875 6776643    3442  22211100             0136889999998


Q ss_pred             CCEEEEEECCCCeEEEEECC
Q 024317          170 ICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       170 ~g~LyVaD~~n~~I~~~~~~  189 (269)
                      .+.|||++...+ ||+|+.+
T Consensus       191 ~g~Lyv~eEd~G-Iw~~da~  209 (355)
T 3amr_A          191 YGRLYIAEEDEA-IWKFSAE  209 (355)
T ss_dssp             TTEEEEEETTTE-EEEEECS
T ss_pred             CCeEEEecccce-EEEEeCC
Confidence            899999999855 9999965

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.93  E-value=2.7e-05  Score=73.67  Aligned_cols=158  Identities=15%  Similarity=0.035  Sum_probs=100.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCC---------CCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL---------SEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~---------~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      ..|+|+.++|++..+||++...++|.++|...         +.+..+....-              .=..|..+++|++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--------------vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--------------LGLGPLHTAFDGRG  342 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--------------CCSCEEEEEECTTS
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--------------CCCCcceEEECCCC
Confidence            47999999998889999999999999998631         00111221111              11379999999999


Q ss_pred             CEEEEeCCCCEEEEEeCCcc-eEEecCCCCCC-CCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeE---------
Q 024317          116 NIYVADKSNHVIRKITNLGV-TTIAGGGSKKE-GRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLI---------  183 (269)
Q Consensus       116 ~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~-~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I---------  183 (269)
                      ++|++....+.|.+++-+.- ..+.|...... ...+.....+..+...|+++++++..||+++... +|+         
T Consensus       343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~  422 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPE  422 (595)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCE
T ss_pred             eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCC
Confidence            99999999999999985431 11111000000 0000000011233446788889988999999987 777         


Q ss_pred             --EEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcE
Q 024317          184 --RQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARP  229 (269)
Q Consensus       184 --~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~l  229 (269)
                        +.|+..++........             .....|+..++++...|
T Consensus       423 ~~ql~dis~~~m~lv~d~-------------p~~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          423 NDQLIDISGDKMVLVHDG-------------PTFAEPHDAIAVHPSIL  457 (595)
T ss_dssp             EEEEEECSSSSCEEEEEE-------------EESSCCCCEEEECTTTT
T ss_pred             cceEEEcCCCcEEEEEEE-------------cCCCCCCceEEccHHHc
Confidence              7777765544333222             13367888888887755

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.84  E-value=0.00062  Score=58.27  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEE
Q 024317           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR  128 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~  128 (269)
                      .++++ .++.+||... ++.|+++|    .+|+.......             .-.....+++|++|+|||+.   +.|.
T Consensus       141 ~~~~~-~~g~l~vgt~-~~~l~~~d----~~g~~~~~~~~-------------~~~~~~~~~~d~~g~l~v~t---~~l~  198 (330)
T 3hxj_A          141 TPIVS-EDGTIYVGSN-DNYLYAIN----PDGTEKWRFKT-------------NDAITSAASIGKDGTIYFGS---DKVY  198 (330)
T ss_dssp             CCEEC-TTSCEEEECT-TSEEEEEC----TTSCEEEEEEC-------------SSCCCSCCEECTTCCEEEES---SSEE
T ss_pred             eeEEc-CCCEEEEEcC-CCEEEEEC----CCCCEeEEEec-------------CCCceeeeEEcCCCEEEEEe---CEEE
Confidence            34452 3666777653 35666664    22544332211             01234567888899999988   6788


Q ss_pred             EEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCccc
Q 024317          129 KITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSV  208 (269)
Q Consensus       129 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~  208 (269)
                      +++++|...+.-...              -.....++++++ |.|||+.. ++.|.+++.++.........    .    
T Consensus       199 ~~d~~g~~~~~~~~~--------------~~~~~~~~~~~~-g~l~v~t~-~~gl~~~~~~g~~~~~~~~~----~----  254 (330)
T 3hxj_A          199 AINPDGTEKWNFYAG--------------YWTVTRPAISED-GTIYVTSL-DGHLYAINPDGTEKWRFKTG----K----  254 (330)
T ss_dssp             EECTTSCEEEEECCS--------------SCCCSCCEECTT-SCEEEEET-TTEEEEECTTSCEEEEEECS----S----
T ss_pred             EECCCCcEEEEEccC--------------CcceeceEECCC-CeEEEEcC-CCeEEEECCCCCEeEEeeCC----C----
Confidence            888777622211100              123567787876 89999986 45788898777765443322    0    


Q ss_pred             ceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          209 WVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       209 ~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                             ..+..++++.+|+|||+...|.+...+
T Consensus       255 -------~~~~~~~~~~~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          255 -------RIESSPVIGNTDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             -------CCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred             -------CccccceEcCCCeEEEecCCCCEEEEC
Confidence                   112345677788888888776555443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.81  E-value=0.0003  Score=66.69  Aligned_cols=122  Identities=11%  Similarity=0.138  Sum_probs=78.9

Q ss_pred             cCCCCcceEEEecCCCeEEEEeCCC---------------------CEEEEEecCCC----CCccEEEEEcCCcccCC--
Q 024317           42 QLEINPHSVIDRPGSSDLIVLDSSR---------------------SAFYTLSFPLS----EESVVKRLAGDGVQGYS--   94 (269)
Q Consensus        42 ~~~~~P~giav~~~~g~lyV~D~~~---------------------~~I~~~dl~~~----~~g~~~~~~g~g~~g~~--   94 (269)
                      ..|..|++|++++.++.+||+-+.+                     +.|++++..-.    ...+...+.-.+.+...  
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            4678999999988899999997643                     46888864211    11122222222221111  


Q ss_pred             ------CCCcccccCCCCceEEEcCCCCEEEEeC------------CCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccc
Q 024317           95 ------DGEPGSARFDKPKSFAVDMKGNIYVADK------------SNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQ  154 (269)
Q Consensus        95 ------dg~~~~~~~~~P~giavd~~G~lyVaD~------------~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~  154 (269)
                            ........|+.|..|++|++|+|||+.-            +|+.++..++. |+ ..++.....          
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----------  530 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----------  530 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----------
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----------
Confidence                  1112245699999999999999999864            35788888864 55 665543211          


Q ss_pred             cccccCceEEEEeCCCCEEEEEE
Q 024317          155 NASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       155 ~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                          ....|++++|++..|||.=
T Consensus       531 ----aE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          531 ----CEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             ----CEEEEEEECTTSSEEEEEE
T ss_pred             ----ccCcCeeECCCCCEEEEEE
Confidence                2357999999977888863

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.80  E-value=0.00054  Score=56.90  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=89.5

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC-------ccEEEEEcC-CcccCCCCCcccccCCCCceEEEcCCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-------SVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-------g~~~~~~g~-g~~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      +.+-..+++.| +|.||..  .++.+++++.   ++       +. .+.+|. |..+             =..+.+|++|
T Consensus        40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~---~t~~~~~W~~s-~t~IG~~Gw~~-------------F~a~~fD~~G   99 (236)
T 1tl2_A           40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTP---PTHDNDNWMGR-AKKIGNGGWNQ-------------FQFLFFDPNG   99 (236)
T ss_dssp             CTTCSEEEECT-TSCEEEE--ETTEEEEESC---CCSTTCCHHHH-CEEEECSCGGG-------------CSEEEECTTS
T ss_pred             cccceeEEECC-CccEEEE--eCCeEEEECC---CCCCccccccc-ccEeccccccc-------------ceEEEECCCC
Confidence            55778999987 9999999  5678999963   23       33 344443 2211             2469999999


Q ss_pred             CEEEEeCCCCEEEEEeC--CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          116 NIYVADKSNHVIRKITN--LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       116 ~lyVaD~~n~~I~~~~~--~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .||+.  .+++|+++++  ++...+.+....- +       ......-..|.++|+ |.||.+.  ++++++-.+-.+  
T Consensus       100 ~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v-g-------~~gw~~~~~lff~p~-G~Lyav~--dg~lyr~~~P~~--  164 (236)
T 1tl2_A          100 YLYAV--SKDKLYKASPPQSDTDNWIARATEV-G-------SGGWSGFKFLFFHPN-GYLYAVH--GQQFYKALPPVS--  164 (236)
T ss_dssp             CEEEE--ETTEEEEESCCCSTTCCHHHHSEEE-E-------CSSGGGEEEEEECTT-SCEEEEE--TTEEEEECCCSS--
T ss_pred             CEEEe--CCCEEEEeCCCcCCCCceeccccEe-c-------cCCCCceEEEEECCC-ceEEEEe--CCcEEecCCCCC--
Confidence            99999  3589999986  4332222221000 0       000222378999998 9999888  466765432211  


Q ss_pred             EEecccCccCCCcccceee-e-----eccceeeEEEecCCcEEEEcCCCCcccc
Q 024317          194 SKSSQSGSALGAVSVWVLV-S-----VLSCLVSLVIGFVARPYIIRHTGRLDPP  241 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~-~-----~l~~p~gia~d~~g~lyVad~~g~~~~~  241 (269)
                                 ....|... .     ....-.=+.++++|+||.+. +|++...
T Consensus       165 -----------~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~~  206 (236)
T 1tl2_A          165 -----------NQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYED  206 (236)
T ss_dssp             -----------TTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred             -----------CCcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeEEec
Confidence                       11111000 0     00112226689999999998 7776643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.72  E-value=0.013  Score=50.60  Aligned_cols=144  Identities=13%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....++++| ++..+++-...+.|..+++   .+++ ...+.+.              -.....++++++|+++++-...
T Consensus       124 ~~~~~~~sp-dg~~l~~g~~dg~v~i~~~---~~~~~~~~~~~~--------------~~~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          124 DAWTLAFSP-DSQYLATGTHVGKVNIFGV---ESGKKEYSLDTR--------------GKFILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             CCCCEEECT-TSSEEEEECTTSEEEEEET---TTCSEEEEEECS--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECC-CCCEEEEEcCCCcEEEEEc---CCCceeEEecCC--------------CceEEEEEECCCCCEEEEEcCC
Confidence            345688865 6666677677788888875   2333 2222211              1234679999999977777677


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +.|+.+|.. ++  ..+.+.                -.....++++|+ +.++++-...+.|+.++............  
T Consensus       186 g~i~iwd~~~~~~~~~~~~h----------------~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--  246 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGH----------------AMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSG--  246 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCC----------------SSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECC--
T ss_pred             CeEEEEECCCCcEEEEEccc----------------CCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcC--
Confidence            899999954 43  333221                123468999998 66666666678899999876544322111  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                                  .-.....+++.++|...++- .++.+
T Consensus       247 ------------h~~~v~~~~~sp~~~~l~s~s~D~~v  272 (321)
T 3ow8_A          247 ------------HASWVLNVAFCPDDTHFVSSSSDKSV  272 (321)
T ss_dssp             ------------CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ------------CCCceEEEEECCCCCEEEEEeCCCcE
Confidence                        11234567777777544433 44433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.67  E-value=0.0014  Score=60.00  Aligned_cols=129  Identities=9%  Similarity=-0.040  Sum_probs=75.5

Q ss_pred             CCcceEEE--ecCCCeEEEEeC-----CCCEEEEEecCCCCCccEEEEE--cCCcccCCCCCcc------cccCCCCceE
Q 024317           45 INPHSVID--RPGSSDLIVLDS-----SRSAFYTLSFPLSEESVVKRLA--GDGVQGYSDGEPG------SARFDKPKSF  109 (269)
Q Consensus        45 ~~P~giav--~~~~g~lyV~D~-----~~~~I~~~dl~~~~~g~~~~~~--g~g~~g~~dg~~~------~~~~~~P~gi  109 (269)
                      ..|..|.+  +|++..+||+..     .++.|..+..+   +|+.....  ........ +...      .+.-..|.+|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d---~g~~~~~~vIdi~~~~v~-~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE---DGKWNAEKVIEIPAEPLE-GNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE---TTEEEEEEEEEECCEECC-SSCCGGGGGGTEECCCCCCE
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec---CCceeEEEEEeCCCcccc-ccccccccccccCCCceeEE
Confidence            35888866  887789999998     88888877642   25432211  01100000 0000      0012579999


Q ss_pred             EEcCCCC-EEEEeCCCCEEEEEeCC--cc-eEEecCCCCC-CCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          110 AVDMKGN-IYVADKSNHVIRKITNL--GV-TTIAGGGSKK-EGRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       110 avd~~G~-lyVaD~~n~~I~~~~~~--g~-~~~~g~~~~~-~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      .++++|. |||++.+.+.|.+|+-.  +. +.+.-....+ +...+.......-..|.++++++++..|||+.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999998 99999999999999842  22 2221111110 00000000000123699999999988999999

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.66  E-value=0.00048  Score=59.97  Aligned_cols=108  Identities=10%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             EEecCCCeEEEEe---CCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC-CCEEEEeCCCCE
Q 024317           51 IDRPGSSDLIVLD---SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKSNHV  126 (269)
Q Consensus        51 av~~~~g~lyV~D---~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~-G~lyVaD~~n~~  126 (269)
                      ++++.++.||++|   .++..|++++++  .. ....+....             .     ++++.. +.||++|.+..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs-~~~~lt~~~-------------~-----~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRID--GE-EKKKIKNHY-------------L-----FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETT--SC-CCEEEESSC-------------C-----CCSEEETTEEEEECTTTCC
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECC--CC-CeEEEeCCC-------------c-----eEeeEECCEEEEEeCCCce
Confidence            4445689999999   678899999763  11 122232110             0     223444 459999998899


Q ss_pred             EEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEec
Q 024317          127 IRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSS  197 (269)
Q Consensus       127 I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~  197 (269)
                      |.+.+.+|. ......+                  +..++++|+++.||.+|..+ .+|.+.+++|.......
T Consensus       169 Iy~~~l~g~~~~~l~~~------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt  223 (302)
T 3s25_A          169 LYRYDTASQSEALFYDC------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT  223 (302)
T ss_dssp             EEEEETTTTEEEEEECS------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS
T ss_pred             EEEEECCCCCEEEEeCC------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe
Confidence            999998887 3332211                  11234567778999999754 58999999987665543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.65  E-value=0.0069  Score=55.89  Aligned_cols=141  Identities=12%  Similarity=0.117  Sum_probs=90.3

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ..+++++| ++..+++-...+.|..+|.    +++ +..+.+.              -.....++++++|.+.++=...+
T Consensus       429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~----~~~~~~~~~~~--------------~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          429 VWGVAFSP-DDQTIASASDDKTVKLWNR----NGQLLQTLTGH--------------SSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEET----TSCEEEEEECC--------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEEC----CCCEEEEEcCC--------------CCCEEEEEEcCCCCEEEEEeCCC
Confidence            46678865 5555555556677888763    333 3333221              12457899999999877766788


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccC
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL  203 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~  203 (269)
                      .|+.++.+|.  ..+.+.                -...+.|+++|+ +.++++-...+.|+.++..+..+......    
T Consensus       490 ~i~iw~~~~~~~~~~~~h----------------~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~~~~~~~~~~~h----  548 (577)
T 2ymu_A          490 TVKLWNRNGQLLQTLTGH----------------SSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGH----  548 (577)
T ss_dssp             EEEEEETTSCEEEEEECC----------------SSCEEEEEECTT-SSCEEEEETTSEEEEECTTSCEEEEEECC----
T ss_pred             EEEEEcCCCCEEEEEeCC----------------CCCEEEEEEcCC-CCEEEEEECcCEEEEEeCCCCEEEEEcCC----
Confidence            9999998887  444442                134578999998 54444444567899999877655433211    


Q ss_pred             CCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                                 -....++++.++|+..++- .++.+
T Consensus       549 -----------~~~v~~~~fs~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          549 -----------SSSVWGVAFSPDGQTIASASSDKTV  573 (577)
T ss_dssp             -----------SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             -----------CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence                       1345678999999665543 44443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.62  E-value=0.013  Score=49.59  Aligned_cols=143  Identities=8%  Similarity=-0.049  Sum_probs=88.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....+++++ ++..+++-...+.|+.+|+   .+++.......              -.....++++++|.++++-..++
T Consensus       185 ~i~~~~~~~-~~~~l~~~~~dg~i~~~d~---~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          185 GASCIDISN-DGTKLWTGGLDNTVRSWDL---REGRQLQQHDF--------------TSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEET---TTTEEEEEEEC--------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEECC-CCCEEEEEecCCcEEEEEC---CCCceEeeecC--------------CCceEEEEECCCCCEEEEEcCCC
Confidence            457788865 4555555556778888875   34443332211              12457799999999766666678


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccC
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL  203 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~  203 (269)
                      .|+.++....  ..+.+.                -..+..++++++ +.++++-..++.|+.++............    
T Consensus       247 ~i~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----  305 (337)
T 1gxr_A          247 NVEVLHVNKPDKYQLHLH----------------ESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKE----  305 (337)
T ss_dssp             CEEEEETTSSCEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEEC----
T ss_pred             cEEEEECCCCCeEEEcCC----------------ccceeEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEecC----
Confidence            8999986654  332221                234678999998 55555555578999999876654422111    


Q ss_pred             CCcccceeeeeccceeeEEEecCCcEEE-EcCCCCc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVARPYI-IRHTGRL  238 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~lyV-ad~~g~~  238 (269)
                                 -..+..+++.++++..+ +..+|.+
T Consensus       306 -----------~~~v~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          306 -----------SSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             -----------SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             -----------CCcEEEEEECCCCCEEEEecCCCeE
Confidence                       13466788888885444 4455544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.0035  Score=61.06  Aligned_cols=150  Identities=7%  Similarity=-0.007  Sum_probs=93.5

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...|+.+ .+++|||+..  +.|++++.   .++++..+.....     .   ....+...+|+.|++|+|||+-.++ -
T Consensus       452 v~~i~~d-~~g~lwigt~--~Gl~~~~~---~~~~~~~~~~~~~-----~---~~~~~~i~~i~~d~~g~lWigt~~~-G  516 (781)
T 3v9f_A          452 VRVFYED-KNKKIWIGTH--AGVFVIDL---ASKKVIHHYDTSN-----S---QLLENFVRSIAQDSEGRFWIGTFGG-G  516 (781)
T ss_dssp             EEEEEEC-TTSEEEEEET--TEEEEEES---SSSSCCEEECTTT-----S---SCSCSCEEEEEECTTCCEEEEESSS-C
T ss_pred             EEEEEEC-CCCCEEEEEC--CceEEEeC---CCCeEEecccCcc-----c---ccccceeEEEEEcCCCCEEEEEcCC-C
Confidence            4567764 6889999875  57888874   3444444431110     0   0112466889999999999998644 4


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG  204 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g  204 (269)
                      +.++++++.  ..+....  +      .    .-+...+|+.+++ |+||++-. ++.|.++++.......+...   .|
T Consensus       517 l~~~~~~~~~~~~~~~~~--~------l----~~~~i~~i~~d~~-g~lWi~T~-~Glv~~~d~~~~~~~~~~~~---~g  579 (781)
T 3v9f_A          517 VGIYTPDMQLVRKFNQYE--G------F----CSNTINQIYRSSK-GQMWLATG-EGLVCFPSARNFDYQVFQRK---EG  579 (781)
T ss_dssp             EEEECTTCCEEEEECTTT--T------C----SCSCEEEEEECTT-SCEEEEET-TEEEEESCTTTCCCEEECGG---GT
T ss_pred             EEEEeCCCCeEEEccCCC--C------C----CCCeeEEEEECCC-CCEEEEEC-CCceEEECCCCCcEEEcccc---CC
Confidence            788998764  3332210  0      0    0234578888876 89999987 45448998876544433221   11


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      -        .-....+|+.|++|+||++...|
T Consensus       580 l--------~~~~i~~i~~d~~g~lW~~t~~G  603 (781)
T 3v9f_A          580 L--------PNTHIRAISEDKNGNIWASTNTG  603 (781)
T ss_dssp             C--------SCCCCCEEEECSSSCEEEECSSC
T ss_pred             C--------CCceEEEEEECCCCCEEEEcCCc
Confidence            0        01224689999999999998655

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.59  E-value=0.0016  Score=56.61  Aligned_cols=107  Identities=9%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             cceEEEecCCCeEEEEeCC-------------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC
Q 024317           47 PHSVIDRPGSSDLIVLDSS-------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~-------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~  113 (269)
                      +..|.+  .++.||.++..             .+.|++++++   .++...+.                 +. .+.++..
T Consensus        57 ~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d---g~~~~~l~-----------------~~-~~~~~s~  113 (302)
T 3s25_A           57 AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN---GHGSTVLD-----------------PD-PCIYASL  113 (302)
T ss_dssp             EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEETT---SCCCEEEE-----------------CS-CEEEEEE
T ss_pred             eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeCC---CCcceEee-----------------cC-CccEEEE
Confidence            455655  57889888654             3678888652   11122221                 11 1234444


Q ss_pred             CC-CEEEEe---CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317          114 KG-NIYVAD---KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN  187 (269)
Q Consensus       114 ~G-~lyVaD---~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~  187 (269)
                      +| .||++|   ..+..|.+++.+|.  ..+....               .     ++++++++.||.+|.+..+|.+.+
T Consensus       114 ~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~---------------~-----~~~~~~g~~iy~t~~g~~~Iy~~~  173 (302)
T 3s25_A          114 IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY---------------L-----FTCNTSDRYFYYNNPKNGQLYRYD  173 (302)
T ss_dssp             ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC---------------C-----CCSEEETTEEEEECTTTCCEEEEE
T ss_pred             eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC---------------c-----eEeeEECCEEEEEeCCCceEEEEE
Confidence            44 499999   67889999999987  4444321               1     223555679999999888999999


Q ss_pred             CCCCeEEEe
Q 024317          188 LKPEDCSKS  196 (269)
Q Consensus       188 ~~~~~~~~~  196 (269)
                      .++......
T Consensus       174 l~g~~~~~l  182 (302)
T 3s25_A          174 TASQSEALF  182 (302)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCCEEEE
Confidence            998765544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.57  E-value=0.018  Score=49.51  Aligned_cols=145  Identities=8%  Similarity=0.080  Sum_probs=90.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....++++| ++.++++-...+.|..+|+   .+++.......             .-.....++++++|.++++=...+
T Consensus       166 ~v~~~~~sp-dg~~lasg~~dg~i~iwd~---~~~~~~~~~~~-------------h~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          166 FILSIAYSP-DGKYLASGAIDGIINIFDI---ATGKLLHTLEG-------------HAMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET---TTTEEEEEECC-------------CSSCCCEEEECTTSCEEEEECTTS
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEEC---CCCcEEEEEcc-------------cCCceeEEEEcCCCCEEEEEcCCC
Confidence            356788875 5666666566778888885   34544332211             112346899999999888777788


Q ss_pred             EEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .|+.++... .  .++.+.                -.....++++|+ +..+++-...+.|+.++............   
T Consensus       229 ~i~iwd~~~~~~~~~~~~h----------------~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---  288 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGH----------------ASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFD---  288 (321)
T ss_dssp             CEEEEETTTCCEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred             eEEEEECCCcceeEEEcCC----------------CCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcC---
Confidence            899998643 3  333322                134578999998 55555555578899999877654432211   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                                 .-....++++.++|...++- .++.+
T Consensus       289 -----------h~~~v~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          289 -----------HQDQVWGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             -----------CSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             -----------CCCcEEEEEECCCCCEEEEEeCCCeE
Confidence                       11335678888888554443 44444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.55  E-value=0.014  Score=53.82  Aligned_cols=115  Identities=13%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ...++++++ ++..+++-...+.|+.+|    .+++. ..+.+.              -....++++.+++.++++-..+
T Consensus       387 ~v~~~~~s~-dg~~l~~~~~d~~v~~~~----~~~~~~~~~~~~--------------~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          387 SVRGVAFSP-DGQTIASASDDKTVKLWN----RNGQLLQTLTGH--------------SSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSEEEEEC----TTCCEEEEEECC--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEe----CCCCEEEEecCC--------------CCCeEEEEECCCCCEEEEEcCC
Confidence            456788865 555555555567788874    34443 333221              1234679999999977776678


Q ss_pred             CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          125 HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       125 ~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      +.|+.++.++.  ..+.+.                -.....++++|+ +.++++-..++.|+.++..+..+..+
T Consensus       448 ~~v~~w~~~~~~~~~~~~~----------------~~~v~~~~~spd-~~~las~~~d~~i~iw~~~~~~~~~~  504 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTLTGH----------------SSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTL  504 (577)
T ss_dssp             SEEEEEETTSCEEEEEECC----------------SSCEEEEEECTT-SCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCCEEEEEcCC----------------CCCEEEEEEcCC-CCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence            89999998876  444432                124578999998 55555555578899999877655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.49  E-value=0.023  Score=49.14  Aligned_cols=147  Identities=10%  Similarity=0.030  Sum_probs=90.1

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEE-EEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~-~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....++++| ++.++++-...+.|..+|+   .++... .+.+.              -.....++++++|+++++-...
T Consensus       186 ~v~~~~~~~-~~~~l~sg~~d~~v~~wd~---~~~~~~~~~~~h--------------~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          186 DVMSLSLAP-DTRLFVSGACDASAKLWDV---REGMCRQTFTGH--------------ESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET---TTCSEEEEECCC--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEEC---CCCeeEEEEcCC--------------cCCEEEEEEcCCCCEEEEEcCC
Confidence            346788865 6777777777788888875   344433 33211              1245789999999988887778


Q ss_pred             CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          125 HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       125 ~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      +.|+.+|....  .......             ........++++|+ +.++++-..++.|+.++............   
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~---  310 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHD-------------NIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAG---  310 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCT-------------TCCSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEEC---
T ss_pred             CcEEEEECCCCcEEEEEccC-------------CcccceEEEEECCC-CCEEEEECCCCeEEEEEcccCcEeeEeec---
Confidence            89999996443  2111110             01223578999998 66666666678999999765443221111   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRL  238 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~  238 (269)
                                 .-.....+++.++|...++ ..++.+
T Consensus       311 -----------h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          311 -----------HDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             -----------CSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             -----------CCCcEEEEEEcCCCCEEEEEcCCccE
Confidence                       1123556888888854444 344443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.45  E-value=0.00075  Score=62.28  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             cCCCCceEEEcCCCC--EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCC---CCEE
Q 024317          102 RFDKPKSFAVDMKGN--IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH---ICAL  173 (269)
Q Consensus       102 ~~~~P~giavd~~G~--lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~---~g~L  173 (269)
                      .|..|.+|++.++|.  |||++. .++|++++++|.   ..+.+....   ...+. .......+.|||++|+   ++.|
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~---~~~g~-~~~~e~Gllgia~~P~f~~n~~l   86 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKL---VQSGI-KGGDERGLLSLAFHPNYKKNGKL   86 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTT---BCCCC-SSSCCCSEEEEEECTTHHHHCEE
T ss_pred             CCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcce---eccCc-cccCCCcceeeEeCCCCcCCCEE
Confidence            488999999999985  999997 579999987764   223322110   00000 0001245679999985   5799


Q ss_pred             EEEECCC------------CeEEEEECCCC---------eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE
Q 024317          174 LISDHGN------------QLIRQINLKPE---------DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII  232 (269)
Q Consensus       174 yVaD~~n------------~~I~~~~~~~~---------~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa  232 (269)
                      ||+-+..            .+|.++.....         ..+.+...  ...         .--.-..|++++||.|||+
T Consensus        87 Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~--~~~---------~~H~g~~l~fgpDG~LYv~  155 (463)
T 2wg3_C           87 YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA--ELH---------RKHLGGQLLFGPDGFLYII  155 (463)
T ss_dssp             EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE--ESS---------SSSCEEEEEECTTSCEEEE
T ss_pred             EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC--CCC---------CcccCCcEeECCCCcEEEE
Confidence            9986421            48888886531         11111111  000         0122457999999999999


Q ss_pred             cCC
Q 024317          233 RHT  235 (269)
Q Consensus       233 d~~  235 (269)
                      --+
T Consensus       156 ~Gd  158 (463)
T 2wg3_C          156 LGD  158 (463)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            743

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.44  E-value=0.0019  Score=61.32  Aligned_cols=118  Identities=17%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             ccCCCCceEEEcC-CCCEEEEeCCC---------------------CEEEEEeCCcc---------eE--EecCCCCCCC
Q 024317          101 ARFDKPKSFAVDM-KGNIYVADKSN---------------------HVIRKITNLGV---------TT--IAGGGSKKEG  147 (269)
Q Consensus       101 ~~~~~P~giavd~-~G~lyVaD~~n---------------------~~I~~~~~~g~---------~~--~~g~~~~~~~  147 (269)
                      ..|.+|++|++++ +|.+||+-+.+                     ++|+++++++.         ..  +++.......
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            4699999999996 88999997742                     57888875431         11  1221111000


Q ss_pred             ----CCCCccccccccCceEEEEeCCCCEEEEEEC------------CCCeEEEEECCCCeEEEecccCccCCCccccee
Q 024317          148 ----RADGPAQNASFSNDFELTFVPHICALLISDH------------GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVL  211 (269)
Q Consensus       148 ----~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~------------~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~  211 (269)
                          ..........|..|..|++++. |+|||+.=            +|+.++...+..+.+..+...  +.+       
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~g-------  530 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIG-------  530 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTT-------
T ss_pred             cccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCC-------
Confidence                0001112335899999999997 88988754            356788888776666665543  222       


Q ss_pred             eeeccceeeEEEecCC-cEEEE
Q 024317          212 VSVLSCLVSLVIGFVA-RPYII  232 (269)
Q Consensus       212 ~~~l~~p~gia~d~~g-~lyVa  232 (269)
                          +...|+++.+|+ .|||.
T Consensus       531 ----aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          531 ----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             ----CEEEEEEECTTSSEEEEE
T ss_pred             ----ccCcCeeECCCCCEEEEE
Confidence                568899999999 67776

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.01  Score=57.73  Aligned_cols=150  Identities=9%  Similarity=-0.008  Sum_probs=94.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...+|+.+ .+|+|||+-.++ -+++++.   ..+++..+...      .+    ..-+...+|+.|++|+||++.. ++
T Consensus       496 ~i~~i~~d-~~g~lWigt~~~-Gl~~~~~---~~~~~~~~~~~------~~----l~~~~i~~i~~d~~g~lWi~T~-~G  559 (781)
T 3v9f_A          496 FVRSIAQD-SEGRFWIGTFGG-GVGIYTP---DMQLVRKFNQY------EG----FCSNTINQIYRSSKGQMWLATG-EG  559 (781)
T ss_dssp             CEEEEEEC-TTCCEEEEESSS-CEEEECT---TCCEEEEECTT------TT----CSCSCEEEEEECTTSCEEEEET-TE
T ss_pred             eeEEEEEc-CCCCEEEEEcCC-CEEEEeC---CCCeEEEccCC------CC----CCCCeeEEEEECCCCCEEEEEC-CC
Confidence            45678884 689999997644 3778853   34455554311      00    0123457899999999999986 44


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc-Ccc
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS-GSA  202 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~-g~~  202 (269)
                      -|.++++...  ..+....        +..    -+...+|+.+++ |+||++-.  +-|.+|++.......+... |..
T Consensus       560 lv~~~d~~~~~~~~~~~~~--------gl~----~~~i~~i~~d~~-g~lW~~t~--~Gl~~~~~~~~~~~~~~~~dGl~  624 (781)
T 3v9f_A          560 LVCFPSARNFDYQVFQRKE--------GLP----NTHIRAISEDKN-GNIWASTN--TGISCYITSKKCFYTYDHSNNIP  624 (781)
T ss_dssp             EEEESCTTTCCCEEECGGG--------TCS----CCCCCEEEECSS-SCEEEECS--SCEEEEETTTTEEEEECGGGTCC
T ss_pred             ceEEECCCCCcEEEccccC--------CCC----CceEEEEEECCC-CCEEEEcC--CceEEEECCCCceEEecccCCcc
Confidence            4488987654  3332110        000    123468988876 89999863  4499999988766655432 111


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      ..         . -.+..++.+++|+||+.-.+|
T Consensus       625 ~~---------~-f~~~~~~~~~~G~l~~g~~~G  648 (781)
T 3v9f_A          625 QG---------S-FISGCVTKDHNGLIYFGSING  648 (781)
T ss_dssp             SS---------C-EEEEEEEECTTSCEEEEETTE
T ss_pred             cc---------c-cccCceEECCCCEEEEECCCc
Confidence            11         0 124578889999999998665

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.33  E-value=0.071  Score=46.77  Aligned_cols=157  Identities=9%  Similarity=0.004  Sum_probs=94.9

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...+++.+.+++++++-...+.|..+|+.. ....+..+.+.              -.....+++.++|..+++=...+.
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~-~~~~~~~~~~h--------------~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRI-TSRAVRTYHGH--------------EGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTT-TCCCCEEECCC--------------SSCCCEEEECTTSSEEEEECSSSC
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCC-CCcceEEECCc--------------CCCeEEEEEecCCCeEEEEcCCCe
Confidence            456677655788888888888899998631 11223333221              124568999999998888888899


Q ss_pred             EEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccC
Q 024317          127 IRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSAL  203 (269)
Q Consensus       127 I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~  203 (269)
                      |+.+|.. +.  ..+.......         .........++++++ +.++++-..++.|+.++............- ..
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~  341 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRN---------DNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QN  341 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSS---------CCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCS-CS
T ss_pred             EEEEECCCCcEEEEeccccccc---------ccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecc-cC
Confidence            9999954 43  2222211100         011233578999998 667777777889999997655443321110 00


Q ss_pred             CCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                      +         .-.....+++.++|...++- .++.+
T Consensus       342 ~---------h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          342 S---------HEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             S---------CCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             C---------CCCceEEEEECCCCCEEEEeeCCCCE
Confidence            1         11335678888888665554 44443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.30  E-value=0.00092  Score=55.52  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEeCCc--------ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE
Q 024317          103 FDKPKSFAVDMKGNIYVADKSNHVIRKITNLG--------VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL  174 (269)
Q Consensus       103 ~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g--------~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly  174 (269)
                      +....+++++++|.||..  .++.++++++..        ..+.+|...              .+.=..+.++++ |.||
T Consensus        40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G--------------w~~F~a~~fD~~-G~LY  102 (236)
T 1tl2_A           40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG--------------WNQFQFLFFDPN-GYLY  102 (236)
T ss_dssp             CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC--------------GGGCSEEEECTT-SCEE
T ss_pred             cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc--------------cccceEEEECCC-CCEE
Confidence            556679999999999999  467899999732        123333211              111246888987 9999


Q ss_pred             EEECCCCeEEEEECC--CCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCc
Q 024317          175 ISDHGNQLIRQINLK--PEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL  238 (269)
Q Consensus       175 VaD~~n~~I~~~~~~--~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~  238 (269)
                      ++  .+++|+|+++-  +......  .+...+..       .-..-.-|+++++|.||.+. ++++
T Consensus       103 av--~dG~iyr~~pP~~~~~~Wl~--~a~~vg~~-------gw~~~~~lff~p~G~Lyav~-dg~l  156 (236)
T 1tl2_A          103 AV--SKDKLYKASPPQSDTDNWIA--RATEVGSG-------GWSGFKFLFFHPNGYLYAVH-GQQF  156 (236)
T ss_dssp             EE--ETTEEEEESCCCSTTCCHHH--HSEEEECS-------SGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             Ee--CCCEEEEeCCCcCCCCceec--cccEeccC-------CCCceEEEEECCCceEEEEe-CCcE
Confidence            98  34899999752  2211000  00000000       11345789999999999999 8775

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.28  E-value=0.027  Score=47.48  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...+++++ +++.+++-...+.|+.+|+   .+++......             ..-.....++++++++.+++-..++.
T Consensus       144 i~~~~~~~-~~~~l~~~~~dg~v~~~d~---~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~  206 (337)
T 1gxr_A          144 CYALAISP-DSKVCFSCCSDGNIAVWDL---HNQTLVRQFQ-------------GHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEET---TTTEEEEEEC-------------CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEeC---CCCceeeeee-------------cccCceEEEEECCCCCEEEEEecCCc
Confidence            45677765 4444444444566777764   2343332221             11224578999999987666666889


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG  204 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g  204 (269)
                      |+.++....  ......                -..+..+++++++..|+++. .++.|+.++............     
T Consensus       207 i~~~d~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~-----  264 (337)
T 1gxr_A          207 VRSWDLREGRQLQQHDF----------------TSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH-----  264 (337)
T ss_dssp             EEEEETTTTEEEEEEEC----------------SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC-----
T ss_pred             EEEEECCCCceEeeecC----------------CCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCC-----
Confidence            999996543  222211                12357899999855555554 467899999887654332111     


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                                -.....+++.++|+++++- .+|.+.
T Consensus       265 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          265 ----------ESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             ----------SSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ----------ccceeEEEECCCCCEEEEecCCCcEE
Confidence                      1335667777777544433 455443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.27  E-value=0.029  Score=48.97  Aligned_cols=149  Identities=13%  Similarity=0.040  Sum_probs=89.5

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~  125 (269)
                      -..+++++.+..++++-...+.|+.+|+   .+++.......           ...-..+..+++.+ +++++++-..++
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~---~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDT---RCPKPASQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEET---TSSSCEEECC---------------CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             eEEEEecCCCCCceeeeccccccccccc---cccceeeeeec-----------ceeeccceeeeecCCCCcceEEeccCC
Confidence            4567776655567777766778888875   23332222111           01112456788887 456777766688


Q ss_pred             EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .|+.+|.. ++  .++.+.                -...+.|+++|++..++++-...+.|+.++.....+.....    
T Consensus       238 ~v~~wd~~~~~~~~~~~~h----------------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~----  297 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVH----------------SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA----  297 (344)
T ss_dssp             EEEEEESCC--CCEEEECC----------------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC----
T ss_pred             cEEEEECCCCcEEEEEcCC----------------CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC----
Confidence            99999854 33  444432                12347899999855666666667889999988776543211    


Q ss_pred             CCCcccceeeeeccceeeEEEecCCc-EEEE-cCCCCccc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVAR-PYII-RHTGRLDP  240 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~-lyVa-d~~g~~~~  240 (269)
                      +           -.....+++.++|. +.++ -.++.+..
T Consensus       298 H-----------~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          298 H-----------RDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             C-----------SSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             C-----------CCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            1           13356788888884 5443 35555543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.26  E-value=0.029  Score=48.81  Aligned_cols=114  Identities=12%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ..++++++.+++++++-...+.|..+|+.   ...+..+.+..           ..-.....+++.+++.++++-...+.
T Consensus       121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~  186 (383)
T 3ei3_B          121 ITGMKFNQFNTNQLFVSSIRGATTLRDFS---GSVIQVFAKTD-----------SWDYWYCCVDVSVSRQMLATGDSTGR  186 (383)
T ss_dssp             EEEEEEETTEEEEEEEEETTTEEEEEETT---SCEEEEEECCC-----------CSSCCEEEEEEETTTTEEEEEETTSE
T ss_pred             eeEEEeCCCCCCEEEEEeCCCEEEEEECC---CCceEEEeccC-----------CCCCCeEEEEECCCCCEEEEECCCCC
Confidence            35677765455666666667888888752   34444443221           01124578999999997777777889


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      |+.++..+.  ..+.+.                -.....+++++++..++++-..++.|+.++...
T Consensus       187 i~i~d~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          187 LLLLGLDGHEIFKEKLH----------------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             EEEEETTSCEEEEEECS----------------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             EEEEECCCCEEEEeccC----------------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            999998766  343332                234578999998443666666678899999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.23  E-value=0.019  Score=51.52  Aligned_cols=74  Identities=9%  Similarity=-0.006  Sum_probs=48.2

Q ss_pred             CceEEEcCCCC-EEEEeC--CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-
Q 024317          106 PKSFAVDMKGN-IYVADK--SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-  179 (269)
Q Consensus       106 P~giavd~~G~-lyVaD~--~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-  179 (269)
                      ...+++.++|. |+++-.  +..+|++++.++.  ..+...                -.....++++|++..|+++... 
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~----------------~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE----------------GSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------------SSEEEEEEECTTSSEEEEEEECS
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC----------------CCcccCeEECCCCCEEEEEECcC
Confidence            45788989998 555543  3348888886654  332221                1234578899986678777654 


Q ss_pred             -CCeEEEEECCCCeEEE
Q 024317          180 -NQLIRQINLKPEDCSK  195 (269)
Q Consensus       180 -n~~I~~~~~~~~~~~~  195 (269)
                       ...|+.++.++.....
T Consensus       333 g~~~i~~~d~~~~~~~~  349 (415)
T 2hqs_A          333 GQQHIAKQDLATGGVQV  349 (415)
T ss_dssp             SCEEEEEEETTTCCEEE
T ss_pred             CceEEEEEECCCCCEEE
Confidence             3579999988766543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.15  E-value=0.09  Score=45.71  Aligned_cols=147  Identities=8%  Similarity=-0.001  Sum_probs=86.4

Q ss_pred             ceEEEecC-CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           48 HSVIDRPG-SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        48 ~giav~~~-~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ..+++.+. +++++++-...+.|+.+|+   .+++.......             .-.....+++.++|+++++=...+.
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~---~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDM---RSGQCVQAFET-------------HESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEET---TTCCEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEEC---CCCcEEEEecC-------------CCCCeEEEEEeCCCCEEEEEeCCCe
Confidence            45566543 3566666666778888875   34443322210             1124467999999998877777889


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG  204 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g  204 (269)
                      |+.+|....  .......             ........++++++ +.++++-...+.|+.++............     
T Consensus       264 v~lwd~~~~~~~~~~~~~-------------~~~~~~~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-----  324 (354)
T 2pbi_B          264 CRLYDLRADREVAIYSKE-------------SIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFG-----  324 (354)
T ss_dssp             EEEEETTTTEEEEEECCT-------------TCCSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECC-----
T ss_pred             EEEEECCCCcEEEEEcCC-------------CcccceeEEEEeCC-CCEEEEEECCCcEEEEECCCCceEEEEEC-----
Confidence            999986433  2222111             01234568999998 55555555567899999755433221111     


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEE-cCCCCc
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRL  238 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~  238 (269)
                               .-.....+++.++|...++ ..++.+
T Consensus       325 ---------h~~~v~~l~~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          325 ---------HENRVSTLRVSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             ---------CSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             ---------CCCcEEEEEECCCCCEEEEEcCCCCE
Confidence                     1134567889999965544 355443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.11  E-value=0.0075  Score=54.16  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=75.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      -.+|+++|.+++++++-+..+.|..+|+   ..+.+..+....           ..-.....+++++++.++++=...+.
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~g~~dg~  232 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDF---KGNILRVFASSD-----------TINIWFCSLDVSASSRMVVTGDNVGN  232 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEET---TSCEEEEEECCS-----------SCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeec---cCCceeEEeccC-----------CCCccEEEEEECCCCCEEEEEeCCCc
Confidence            3678887667777777777788888875   234444443221           01123356899999998887777889


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      |+.++.++.  ..+.+.                -...++|+++|++..++++-...+.|+.++...
T Consensus       233 i~~wd~~~~~~~~~~~h----------------~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          233 VILLNMDGKELWNLRMH----------------KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             EEEEESSSCBCCCSBCC----------------SSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             EeeeccCcceeEEEecc----------------cceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            999997665  222111                123478999988566777666677888888754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.08  E-value=0.029  Score=54.61  Aligned_cols=153  Identities=10%  Similarity=0.102  Sum_probs=92.5

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....|+.+ .+|+|||+-.  +.+++++.   .++++..+....     +.  ....-+....|+.|++|+|||+..  +
T Consensus       453 ~v~~i~~d-~~g~lwigt~--~Gl~~~~~---~~~~~~~~~~~~-----~~--~~~~~~~i~~i~~d~~g~lWigt~--~  517 (795)
T 4a2l_A          453 NVYAILPD-GEGNLWLGTL--SALVRFNP---EQRSFTTIEKEK-----DG--TPVVSKQITTLFRDSHKRLWIGGE--E  517 (795)
T ss_dssp             CEEEEEEC-SSSCEEEEES--SCEEEEET---TTTEEEECCBCT-----TC--CBCCCCCEEEEEECTTCCEEEEES--S
T ss_pred             eeEEEEEC-CCCCEEEEec--CceeEEeC---CCCeEEEccccc-----cc--cccCCceEEEEEECCCCCEEEEeC--C
Confidence            34567764 5789999875  45888863   345555442110     00  000113457899999999999986  4


Q ss_pred             EEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317          126 VIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG  204 (269)
Q Consensus       126 ~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g  204 (269)
                      -+.+++++.. ..+.....     .++    ..-....+|+.+++ |.|||+-..  -|.++++.......+...   .|
T Consensus       518 Gl~~~~~~~~~~~~~~~~~-----~~~----l~~~~i~~i~~d~~-g~lWigT~~--Gl~~~d~~~~~~~~~~~~---~g  582 (795)
T 4a2l_A          518 GLSVFKQEGLDIQKASILP-----VSN----VTKLFTNCIYEASN-GIIWVGTRE--GFYCFNEKDKQIKRYNTT---NG  582 (795)
T ss_dssp             CEEEEEEETTEEEECCCSC-----SCG----GGGSCEEEEEECTT-SCEEEEESS--CEEEEETTTTEEEEECGG---GT
T ss_pred             ceEEEeCCCCeEEEecCCC-----CCC----CCCCeeEEEEECCC-CCEEEEeCC--CceeECCCCCcEEEeCCC---CC
Confidence            5888886544 31111000     000    01234578888876 899998864  599999887765544321   11


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      -        .-....+|+.|++|+||++...|
T Consensus       583 l--------~~~~i~~i~~d~~g~lWi~t~~G  606 (795)
T 4a2l_A          583 L--------PNNVVYGILEDSFGRLWLSTNRG  606 (795)
T ss_dssp             C--------SCSCEEEEEECTTSCEEEEETTE
T ss_pred             C--------chhheEEEEECCCCCEEEEcCCc
Confidence            0        01235689999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.08  E-value=0.066  Score=45.16  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      .-..+++++ ++.++++-...+.|..++.   .+++.......             .-.....++++++++++++-...+
T Consensus        25 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~---~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           25 AVSSVKFSP-NGEWLASSSADKLIKIWGA---YDGKFEKTISG-------------HKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET---TTCCEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEECC-CCCEEEEeeCCCeEEEEeC---CCcccchhhcc-------------CCCceEEEEEcCCCCEEEEECCCC
Confidence            457889976 5666666556677888874   34554433211             112346799999999777777788


Q ss_pred             EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .|+.++.. +.  ..+.+.                -.....++++++ +.++++-..++.|+.++......
T Consensus        88 ~i~vwd~~~~~~~~~~~~~----------------~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGH----------------SNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             EEEEEETTTCCEEEEEECC----------------SSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEEECCCCcEEEEEcCC----------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEE
Confidence            99999854 33  333322                123467888987 55555555567899999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.05  E-value=0.037  Score=49.49  Aligned_cols=162  Identities=7%  Similarity=0.007  Sum_probs=95.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ....+++++.++.++++....+.|+.+|+..... ..+..+..              .-..+..|++++++. ++++-..
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------------~~~~v~~i~~~p~~~~~l~tg~~  298 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA--------------HTAEVNCLSFNPYSEFILATGSA  298 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC--------------CSSCEEEEEECSSCTTEEEEEET
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec--------------CCCCeEEEEeCCCCCCEEEEEeC
Confidence            3577888776788988888899999998742110 11222211              123567899999886 7777777


Q ss_pred             CCEEEEEeCCc--c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc
Q 024317          124 NHVIRKITNLG--V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       124 n~~I~~~~~~g--~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~  199 (269)
                      .+.|+.++...  .  ..+.+.                -.....|+++|++..++++-...++|+.++............
T Consensus       299 dg~v~vwd~~~~~~~~~~~~~h----------------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  362 (430)
T 2xyi_A          299 DKTVALWDLRNLKLKLHSFESH----------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  362 (430)
T ss_dssp             TSEEEEEETTCTTSCSEEEECC----------------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred             CCeEEEEeCCCCCCCeEEeecC----------------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence            88999999543  2  333322                124578999998557888877788999998765210000000


Q ss_pred             CccCCCcccce-eeeeccceeeEEEecCCc-EEEEc-CCCCc
Q 024317          200 GSALGAVSVWV-LVSVLSCLVSLVIGFVAR-PYIIR-HTGRL  238 (269)
Q Consensus       200 g~~~g~~~~~~-~~~~l~~p~gia~d~~g~-lyVad-~~g~~  238 (269)
                       ...+...... ....-..+..+++.+++. ++++- .+|.+
T Consensus       363 -~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          363 -AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             -HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             -cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence             0000000000 000124578899999987 55544 55543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.05  E-value=0.035  Score=54.02  Aligned_cols=149  Identities=12%  Similarity=0.013  Sum_probs=92.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...|+.+ .+|++||+..  +.+++++.   .++++ .+....    ..   ....-+...+|+.|++|+|||+-..  -
T Consensus       500 i~~i~~d-~~g~lWigt~--~Gl~~~~~---~~~~~-~~~~~~----~~---~~l~~~~i~~i~~d~~g~lWigT~~--G  563 (795)
T 4a2l_A          500 ITTLFRD-SHKRLWIGGE--EGLSVFKQ---EGLDI-QKASIL----PV---SNVTKLFTNCIYEASNGIIWVGTRE--G  563 (795)
T ss_dssp             EEEEEEC-TTCCEEEEES--SCEEEEEE---ETTEE-EECCCS----CS---CGGGGSCEEEEEECTTSCEEEEESS--C
T ss_pred             EEEEEEC-CCCCEEEEeC--CceEEEeC---CCCeE-EEecCC----CC---CCCCCCeeEEEEECCCCCEEEEeCC--C
Confidence            4567774 6899999986  45888864   23444 332100    00   0011235578999999999999864  6


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc-CccC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS-GSAL  203 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~-g~~~  203 (269)
                      +.++++...  ..+....        +..    -+...+|+.+++ |+||++-.  +-|.+|++.......+... |...
T Consensus       564 l~~~d~~~~~~~~~~~~~--------gl~----~~~i~~i~~d~~-g~lWi~t~--~Gl~~~~~~~~~~~~~~~~dGl~~  628 (795)
T 4a2l_A          564 FYCFNEKDKQIKRYNTTN--------GLP----NNVVYGILEDSF-GRLWLSTN--RGISCFNPETEKFRNFTESDGLQS  628 (795)
T ss_dssp             EEEEETTTTEEEEECGGG--------TCS----CSCEEEEEECTT-SCEEEEET--TEEEEEETTTTEEEEECGGGTCSC
T ss_pred             ceeECCCCCcEEEeCCCC--------CCc----hhheEEEEECCC-CCEEEEcC--CceEEEcCCCCcEEEcCCcCCCcc
Confidence            889997654  3332110        000    123467887876 89999884  5699999988766554322 1111


Q ss_pred             CCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      .         . -...+++.+++|++|++..+|
T Consensus       629 ~---------~-f~~~~~~~~~~G~l~~g~~~G  651 (795)
T 4a2l_A          629 N---------Q-FNTASYCRTSVGQMYFGGING  651 (795)
T ss_dssp             S---------C-EEEEEEEECTTSCEEEEETTE
T ss_pred             c---------c-CccCceeECCCCeEEEecCCc
Confidence            1         0 124578889999999998665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.03  E-value=0.066  Score=46.50  Aligned_cols=133  Identities=12%  Similarity=0.042  Sum_probs=75.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEE-EEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~-~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....+++++ ++ ++++-...+.|..+|+   .+++.. .+.+..  +..      ..-.....+++++++.++++-...
T Consensus       188 ~i~~~~~~~-~~-~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~--~h~------~~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          188 FATSVDISE-RG-LIATGFNNGTVQISEL---STLRPLYNFESQH--SMI------NNSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             CCCEEEECT-TS-EEEEECTTSEEEEEET---TTTEEEEEEECCC-----------CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CceEEEECC-Cc-eEEEEeCCCcEEEEEC---CCCceeEEEeccc--ccc------ccCCccceEEECCCCCEEEEEecC
Confidence            467889975 55 7777777899999986   334433 332200  000      001245789999999977766556


Q ss_pred             ---CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          125 ---HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       125 ---~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                         +.|+.++.. +.  ..+.+.........   ...+.-.....++++++ +.++++-..++.|+.++........
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSSQASL---GEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERIT  327 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEECCCCcccceeccCcccccccc---cccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceeE
Confidence               789999954 43  33332100000000   00001234578999998 4455554567899999987765433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.00  E-value=0.036  Score=47.60  Aligned_cols=104  Identities=9%  Similarity=-0.049  Sum_probs=62.4

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCC-------------------cc--eEEecCCCCCCCCCCCccccccccCceE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNL-------------------GV--TTIAGGGSKKEGRADGPAQNASFSNDFE  163 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~-------------------g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~g  163 (269)
                      ....++++++++++++-...+.|+.++..                   +.  ..+.+                .-.....
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~  207 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----------------SCGWVHG  207 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------------CSSCEEE
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------------CCCeEEE
Confidence            45789999999877776667888888842                   11  11111                1234678


Q ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317          164 LTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       164 ia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                      +++++++..|+++. .++.|+.++............              .-.....++++++|.++++-.++.+.
T Consensus       208 ~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~d~~i~  268 (372)
T 1k8k_C          208 VCFSANGSRVAWVS-HDSTVCLADADKKMAVATLAS--------------ETLPLLAVTFITESSLVAAGHDCFPV  268 (372)
T ss_dssp             EEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEEC--------------SSCCEEEEEEEETTEEEEEETTSSCE
T ss_pred             EEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEcc--------------CCCCeEEEEEecCCCEEEEEeCCeEE
Confidence            99999844555544 568899999865433222111              00234567777777665555555543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.99  E-value=0.099  Score=46.70  Aligned_cols=116  Identities=17%  Similarity=0.150  Sum_probs=72.9

Q ss_pred             CcceEEEecCCCeEEEEeCC--CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~--~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      ....++++|++..|+.+...  ...|+.+|+   .+|+...+.+..              .....++++++|. |+++-.
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~---~tg~~~~l~~~~--------------~~~~~~~~spdg~~la~~~~  242 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALS  242 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEET---TTCCEEEEECCS--------------SCEEEEEECTTSSEEEEEEC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEEC---CCCcEEEeecCC--------------CcccCEEEcCCCCEEEEEEe
Confidence            45678888766666666543  368999985   356655554221              1346789999998 664543


Q ss_pred             --CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEE
Q 024317          123 --SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--NQLIRQINLKPEDCS  194 (269)
Q Consensus       123 --~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--n~~I~~~~~~~~~~~  194 (269)
                        ++..|+.++..+.  ..+...                -.....++++|++..|+++...  ..+|+.++..+....
T Consensus       243 ~~g~~~i~~~d~~~~~~~~l~~~----------------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~  304 (415)
T 2hqs_A          243 KTGSLNLYVMDLASGQIRQVTDG----------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ  304 (415)
T ss_dssp             TTSSCEEEEEETTTCCEEECCCC----------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred             cCCCceEEEEECCCCCEEeCcCC----------------CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence              3567999996543  333221                1234678899986667766542  337999998776543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.99  E-value=0.028  Score=49.12  Aligned_cols=114  Identities=12%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCC
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH  125 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~  125 (269)
                      ..|++++ ++..+++-...+.|+.+|+   .+++... +.+.              -..-..+++.+++. ++++-...+
T Consensus       131 ~~v~~sp-dg~~l~sgs~d~~i~iwd~---~~~~~~~~~~~h--------------~~~V~~~~~~~~~~~~l~s~s~D~  192 (344)
T 4gqb_B          131 STVSVLS-SGTQAVSGSKDICIKVWDL---AQQVVLSSYRAH--------------AAQVTCVAASPHKDSVFLSCSEDN  192 (344)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEET---TTTEEEEEECCC--------------SSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEEC---CCCcEEEEEcCc--------------CCceEEEEecCCCCCceeeecccc
Confidence            5677765 5666666556677888875   3444333 2211              12346788888774 777766678


Q ss_pred             EEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          126 VIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       126 ~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      .|+.+|.. ++ .......             ..-..+..+++++++++++++-..++.|+.++.....
T Consensus       193 ~v~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          193 RILLWDTRCPKPASQIGCS-------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             CEEEEETTSSSCEEECC-----------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             ccccccccccceeeeeecc-------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            89999854 33 2221110             0113467899998767888876677899999986543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.97  E-value=0.058  Score=48.18  Aligned_cols=123  Identities=11%  Similarity=0.010  Sum_probs=78.5

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC--------CccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--------ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~--------~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      ..+..+++.+.++.++++-...+.|+.+++....        ...+..+.+              .-....++++++++.
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~  194 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------------HQKEGYGLSWNPNLN  194 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------------CSSCCCCEEECTTST
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------------CCCCeEEEEeCCCCC
Confidence            4678899986557788887778889999863100        011122211              122457899999887


Q ss_pred             -EEEEeCCCCEEEEEeCCc--c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          117 -IYVADKSNHVIRKITNLG--V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       117 -lyVaD~~n~~I~~~~~~g--~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                       ++++-...+.|..++...  .  ..+......          ...-....+|++++.++.++++...++.|+.++.+..
T Consensus       195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIF----------TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             TEEEEECTTSCEEEEETTSCCBGGGEEECSEEE----------CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             CeEEEEeCCCeEEEEeCCCCCCCCceeccceee----------cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence             777777788899888643  1  111100000          0012346789999965788888888899999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.15  Score=43.20  Aligned_cols=147  Identities=6%  Similarity=-0.060  Sum_probs=87.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEE-EEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~-~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....+++++ ++..+++-...+.|..+|+.  ..+... .+.+.              -.....+++++++.++++-..+
T Consensus       177 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          177 AATVAGWST-KGKYIIAGHKDGKISKYDVS--NNYEYVDSIDLH--------------EKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             CEEEEEECG-GGCEEEEEETTSEEEEEETT--TTTEEEEEEECC--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCEEEEEECC--CCcEeEEEEecC--------------CCceeEEEECCCCCEEEEecCC
Confidence            567788876 45455554557889999862  323433 33211              1245789999999976666667


Q ss_pred             CEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC-------------eEEEEEC
Q 024317          125 HVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ-------------LIRQINL  188 (269)
Q Consensus       125 ~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~-------------~I~~~~~  188 (269)
                      +.|+.++... .  ..+..                 -.....+++++++..++++...+.             .|+.++.
T Consensus       240 ~~i~v~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          240 TNSFLVDVSTLQVLKKYET-----------------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-----------------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             ceEEEEECCCCceeeeecC-----------------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            8999999543 3  22221                 123567888998666666665433             5666666


Q ss_pred             CCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          189 KPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       189 ~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                      ...........              .-.....+++.++|+++++- .+|.+..
T Consensus       303 ~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          303 IFEEEIGRVQG--------------HFGPLNTVAISPQGTSYASGGEDGFIRL  341 (369)
T ss_dssp             TTCCEEEEEEC--------------CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCcchhheec--------------ccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence            55433322111              11346678888888655543 5555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.87  E-value=0.12  Score=42.32  Aligned_cols=115  Identities=11%  Similarity=0.085  Sum_probs=68.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~-  122 (269)
                      ....++++|++..++++.  .+.|+.+|+   .+ ++...+...            ..-..+..++++++|. |+++.. 
T Consensus        43 ~v~~~~~spdg~~l~~~~--~~~i~~~d~---~~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~~~~~  105 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS--EGLLYRLSL---AGDPSPEKVDTG------------FATICNNDHGISPDGALYAISDKV  105 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE--TTEEEEEES---SSCCSCEECCCT------------TCCCBCSCCEECTTSSEEEEEECT
T ss_pred             ceEeeEECCCCCEEEEEc--CCeEEEEeC---CCCCCceEeccc------------cccccccceEECCCCCEEEEEEeC
Confidence            577899987555555554  568999985   23 444333211            0112456789999998 444442 


Q ss_pred             --CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC--eEEEEECCCCeEE
Q 024317          123 --SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ--LIRQINLKPEDCS  194 (269)
Q Consensus       123 --~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~--~I~~~~~~~~~~~  194 (269)
                        ...+|+.++.++.  ..+..                 ...+..++++|++..|+++...++  +|+.++..+....
T Consensus       106 ~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A          106 EFGKSAIYLLPSTGGTPRLMTK-----------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             TTSSCEEEEEETTCCCCEECCS-----------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCCcceEEEEECCCCceEEeec-----------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence              3578888886554  33221                 112567889998666775554445  5666666655443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.87  E-value=0.098  Score=46.07  Aligned_cols=152  Identities=10%  Similarity=0.031  Sum_probs=88.9

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..+++++ ++..+++-...+.|+.+|+   .+++.......             .-.....+++.++|..+++-...+.|
T Consensus       127 ~~v~~s~-dg~~l~s~~~d~~i~iwd~---~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~s~s~d~~v  189 (393)
T 1erj_A          127 RSVCFSP-DGKFLATGAEDRLIRIWDI---ENRKIVMILQG-------------HEQDIYSLDYFPSGDKLVSGSGDRTV  189 (393)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEET---TTTEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEECC-CCCEEEEEcCCCeEEEEEC---CCCcEEEEEcc-------------CCCCEEEEEEcCCCCEEEEecCCCcE
Confidence            4788875 5666666666788999885   34544333211             11234679999999977777778899


Q ss_pred             EEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCC
Q 024317          128 RKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGA  205 (269)
Q Consensus       128 ~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~  205 (269)
                      +.+|.. +. ......                -.....+++++.++.++++-...+.|+.++..................
T Consensus       190 ~iwd~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~  253 (393)
T 1erj_A          190 RIWDLRTGQCSLTLSI----------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT  253 (393)
T ss_dssp             EEEETTTTEEEEEEEC----------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             EEEECCCCeeEEEEEc----------------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCC
Confidence            999854 33 221111                123567888884466766666678899999876654332211000000


Q ss_pred             cccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          206 VSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       206 ~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                      .       .-.....+++.++|...++- .++.+.
T Consensus       254 ~-------h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          254 G-------HKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             C-------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             C-------CCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            0       11345677888888544443 444443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.84  E-value=0.047  Score=47.66  Aligned_cols=104  Identities=9%  Similarity=0.019  Sum_probs=63.7

Q ss_pred             CCceEEEcCC-CCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          105 KPKSFAVDMK-GNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       105 ~P~giavd~~-G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      .+..+++.++ +.++++-..++.|+.++.. +.  .++.+.                -...+.|+++|+++.++++-...
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~----------------~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH----------------SQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC----------------SSCEEEEEECSSSSCCEEEEETT
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc----------------ceeEEEEEEcCCCCCEEEEEeCC
Confidence            4567888876 4566665557789988853 44  444332                12347899998855666655556


Q ss_pred             CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcEEEEc-CCCCcc
Q 024317          181 QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIR-HTGRLD  239 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad-~~g~~~  239 (269)
                      +.|+.++.+..........    .           ....+|++.+ ++.++++- .+|.++
T Consensus       292 ~~i~iwd~~~~~~~~~~~H----~-----------~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDLSH----R-----------DFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             SCEEEECTTSCEEEEECCC----S-----------SCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             CEEEEEECCCCcEeEECCC----C-----------CCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            8899999887665443211    1           2356678875 56555443 455444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.78  E-value=0.12  Score=44.92  Aligned_cols=124  Identities=9%  Similarity=-0.051  Sum_probs=75.8

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~  123 (269)
                      ..-..+++++.+..++++-...+.|..+|+.   +++.......           ...-....++++.+ +++++++=..
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~l~s~~~  139 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYD---VQNKTSFIQG-----------MGPGDAITGMKFNQFNTNQLFVSSI  139 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETT---STTCEEEECC-----------CSTTCBEEEEEEETTEEEEEEEEET
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCC---Ccccceeeec-----------CCcCCceeEEEeCCCCCCEEEEEeC
Confidence            3467889976432677776667889999862   3333332210           00112446788888 5676666666


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      .+.|+.++..+.  ..+.....             .-.....+++++++..|+++ ..++.|+.++.++......
T Consensus       140 d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~  200 (383)
T 3ei3_B          140 RGATTLRDFSGSVIQVFAKTDS-------------WDYWYCCVDVSVSRQMLATG-DSTGRLLLLGLDGHEIFKE  200 (383)
T ss_dssp             TTEEEEEETTSCEEEEEECCCC-------------SSCCEEEEEEETTTTEEEEE-ETTSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEECCCCceEEEeccCC-------------CCCCeEEEEECCCCCEEEEE-CCCCCEEEEECCCCEEEEe
Confidence            789999997765  33333211             01345789999984444444 4568999999876655443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.77  E-value=0.071  Score=45.66  Aligned_cols=113  Identities=9%  Similarity=-0.046  Sum_probs=69.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc---cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES---VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g---~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .-..+++++ +++++++-...+.|+.+|+   .++   .+..+.+.              -.....++++++++++++-.
T Consensus        10 ~i~~~~~s~-~~~~l~~~~~d~~v~i~~~---~~~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C           10 PISCHAWNK-DRTQIAICPNNHEVHIYEK---SGNKWVQVHELKEH--------------NGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             CCCEEEECT-TSSEEEEECSSSEEEEEEE---ETTEEEEEEEEECC--------------SSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEeC---CCCcEEeeeeecCC--------------CCcccEEEEeCCCCEEEEEc
Confidence            347788975 6666666666888999975   334   33333221              12457899999998666655


Q ss_pred             CCCEEEEEeCC-cc-e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          123 SNHVIRKITNL-GV-T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       123 ~n~~I~~~~~~-g~-~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      ..+.|+.++.. +. . ...-..              .-.....+++++++..|+++.. ++.|+.++.+..
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~  128 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILR--------------INRAARCVRWAPNEKKFAVGSG-SRVISICYFEQE  128 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCC--------------CSSCEEEEEECTTSSEEEEEET-TSSEEEEEEETT
T ss_pred             CCCeEEEEECCCCeeeeeEEeec--------------CCCceeEEEECCCCCEEEEEeC-CCEEEEEEecCC
Confidence            66788888743 32 1 221110              0134678999998555555554 566777765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.77  E-value=0.14  Score=44.91  Aligned_cols=116  Identities=11%  Similarity=0.090  Sum_probs=73.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....+++.+.+.+++++-...+.|..+|+   .+++.......           ...-.....++++++|.++++-...+
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDV---GTGAAVLTLGP-----------DVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEET---TTTEEEEEECT-----------TTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEEC---CCCCccEEEec-----------CCCCCceEEEEECCCCCEEEEEecCC
Confidence            34668887644467776666788888885   34444333210           00112457899999998666666678


Q ss_pred             EEEEEeCC-cc--eEE-ecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE---CCCCeEEEEECCCC
Q 024317          126 VIRKITNL-GV--TTI-AGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD---HGNQLIRQINLKPE  191 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~-~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD---~~n~~I~~~~~~~~  191 (269)
                      .|+.+|.. +.  ..+ .+..               -..+..++++++ +.++++-   ..++.|+.++....
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHE---------------GTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSC---------------SSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBC
T ss_pred             cEEEEeCCCCceeeeeccCCC---------------CCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccc
Confidence            99999964 33  222 1211               123578888987 7777665   56788999998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.76  E-value=0.054  Score=48.46  Aligned_cols=118  Identities=11%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~  125 (269)
                      -+.|++.|.++++.++-...+.|..+|+.  .......+...+            .-..-.+|++.+ +++++++=...+
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~--~~~~~~~~~~~g------------H~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFG--IKDKPTFIKGIG------------AGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSS--CCSCCEEECCCS------------SSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECC--CCCceeEEEccC------------CCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            46788887677777776677889888763  111111111111            112346799986 678777777788


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      .|+.+|..+.  ..+......             -.....++++++ +.++++-...+.|+.++.++..
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTI-------------NIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSC-------------SCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB
T ss_pred             EEEEeeccCCceeEEeccCCC-------------CccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce
Confidence            9999997665  333322110             122357888998 5566655567889999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.15  Score=43.21  Aligned_cols=123  Identities=8%  Similarity=-0.067  Sum_probs=69.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN-  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n-  124 (269)
                      ....+++++ +++.+++-...+.|..+|+   .+++.......              -.....+++++++..+++-..+ 
T Consensus        76 ~v~~~~~~~-~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~~~  137 (369)
T 3zwl_B           76 TIWSIDVDC-FTKYCVTGSADYSIKLWDV---SNGQCVATWKS--------------PVPVKRVEFSPCGNYFLAILDNV  137 (369)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTEEEEEET---TTCCEEEEEEC--------------SSCEEEEEECTTSSEEEEEECCB
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEEC---CCCcEEEEeec--------------CCCeEEEEEccCCCEEEEecCCc
Confidence            346788875 5555566556788999885   34444333211              1245789999999966666555 


Q ss_pred             ----CEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          125 ----HVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       125 ----~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                          +.|..++....   ..+.........   .............+++++++..|+++. .++.|+.++...
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  206 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIH---KIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSN  206 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSE---EEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTT
T ss_pred             cCCCCEEEEEEecCCccceeecccccceee---eccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCC
Confidence                78888874221   111111000000   000000112567899999844555554 467899999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.73  E-value=0.12  Score=43.95  Aligned_cols=157  Identities=13%  Similarity=0.027  Sum_probs=86.3

Q ss_pred             CcceEEEecC---CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC----CCEE
Q 024317           46 NPHSVIDRPG---SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK----GNIY  118 (269)
Q Consensus        46 ~P~giav~~~---~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~----G~ly  118 (269)
                      ....++++|.   +...+++-...+.|..+|+.  ....+..+.+....         ..-.....+++.++    |.++
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~--~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH--SQGEIRLLQSYVDA---------DADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC--GGGCEEEEEEEECS---------CTTCCEEEEEEEECTTTCCEEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcC--CCcEEEeeeecccc---------CCCCcEEEEEeccCCCCCCCEE
Confidence            4578888752   33344444445588888762  23334343321000         01123467888877    5666


Q ss_pred             EEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          119 VADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       119 VaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      ++=..++.|+.++.. +.  ..+.+.                -.....|+++|+++.++++-..++.|+.++........
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGH----------------GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESC----------------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEecCCCEEEEEEchhceEeeeecCC----------------CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence            666667899999954 33  333322                13457899998335555555557889999988665443


Q ss_pred             ecccCccCCCcccceeeeeccceeeEEEecCCcEEE-EcCCCCccc
Q 024317          196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYI-IRHTGRLDP  240 (269)
Q Consensus       196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyV-ad~~g~~~~  240 (269)
                      ....-..           .-.....++++++++..+ +..+|.+..
T Consensus       153 ~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  187 (366)
T 3k26_A          153 IFGGVEG-----------HRDEVLSADYDLLGEKIMSCGMDHSLKL  187 (366)
T ss_dssp             EECSTTS-----------CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             Eeccccc-----------ccCceeEEEECCCCCEEEEecCCCCEEE
Confidence            3211000           113356677777774433 334554443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.041  Score=47.92  Aligned_cols=110  Identities=7%  Similarity=-0.101  Sum_probs=65.7

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...+++++ ++.++++-...+.|..+|+.   +++ +..+.+              .-.....+++.+++ ++++-...+
T Consensus       250 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~--------------~~~~i~~~~~~~~~-~l~~~~~d~  310 (425)
T 1r5m_A          250 ISVLEFND-TNKLLLSASDDGTLRIWHGG---NGNSQNCFYG--------------HSQSIVSASWVGDD-KVISCSMDG  310 (425)
T ss_dssp             EEEEEEET-TTTEEEEEETTSCEEEECSS---SBSCSEEECC--------------CSSCEEEEEEETTT-EEEEEETTS
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEECC---CCccceEecC--------------CCccEEEEEECCCC-EEEEEeCCC
Confidence            35677765 44444444456677777642   232 222211              11245778998888 666666688


Q ss_pred             EEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          126 VIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      .|+.++.. +.  ..+...                -..+..++++++ +.++++-..++.|+.++.....
T Consensus       311 ~i~i~d~~~~~~~~~~~~~----------------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          311 SVRLWSLKQNTLLALSIVD----------------GVPIFAGRISQD-GQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEEETTTTEEEEEEECT----------------TCCEEEEEECTT-SSEEEEEETTSCEEEEECHHHH
T ss_pred             cEEEEECCCCcEeEecccC----------------CccEEEEEEcCC-CCEEEEEECCCeEEEEECCCCc
Confidence            99999964 33  232221                134578999998 4454444456789999876543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.71  E-value=0.2  Score=42.65  Aligned_cols=114  Identities=15%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -..+++++ ++...++-...+.|+.+|+   .+++ +..+.+.              -.....+++++++.++++=...+
T Consensus        68 v~~~~~s~-dg~~l~s~s~D~~v~~wd~---~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~l~s~s~D~  129 (319)
T 3frx_A           68 VQDCTLTA-DGAYALSASWDKTLRLWDV---ATGETYQRFVGH--------------KSDVMSVDIDKKASMIISGSRDK  129 (319)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEET---TTTEEEEEEECC--------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEECC-CCCEEEEEeCCCEEEEEEC---CCCCeeEEEccC--------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            35678864 6666677667788999985   3454 3334322              12346789999999888877788


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC-----CCEEEEEECCCCeEEEEECCCCeEE
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-----ICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-----~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      .|+.++..+.  ..+.+..                .....+++.|.     ++.++++-...+.|+.++.......
T Consensus       130 ~i~vwd~~~~~~~~~~~h~----------------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  189 (319)
T 3frx_A          130 TIKVWTIKGQCLATLLGHN----------------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE  189 (319)
T ss_dssp             CEEEEETTSCEEEEECCCS----------------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEEEEeccC----------------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh
Confidence            9999997766  4443321                12345555553     1335555556778999988765443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.69  E-value=0.22  Score=41.78  Aligned_cols=113  Identities=17%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....+++++ +++++++-...+.|..+|+   .+++ +..+.+.              -.....+++.++++++++-...
T Consensus        67 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~---~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           67 GISDVAWSS-DSNLLVSASDDKTLKIWDV---SSGKCLKTLKGH--------------SNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEET---TTCCEEEEEECC--------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             ceEEEEEcC-CCCEEEEECCCCEEEEEEC---CCCcEEEEEcCC--------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            346788875 5666666666788999985   3344 3333221              1234578888899877777677


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +.|+.++.. +.  ..+.+.                -.....++++++ +.++++-...+.|+.++......
T Consensus       129 ~~i~iwd~~~~~~~~~~~~~----------------~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~  183 (312)
T 4ery_A          129 ESVRIWDVKTGKCLKTLPAH----------------SDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC  183 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCE
T ss_pred             CcEEEEECCCCEEEEEecCC----------------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce
Confidence            889999854 33  232221                123468899887 55555545567899999876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.68  E-value=0.15  Score=48.38  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=71.2

Q ss_pred             CcceEEEecCCCeEEEEeCCC----CEEEEEecCCCCCc-cEEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCC-E
Q 024317           46 NPHSVIDRPGSSDLIVLDSSR----SAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGN-I  117 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~----~~I~~~dl~~~~~g-~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~-l  117 (269)
                      .+..++++|++..|+++....    ..|+.+|.   .+| ....+.......         .......+++.+  +|. +
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~---~~g~~~~~~~~~~~~~---------~~~~~~~~~~sp~~dg~~l  326 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDA---ETGRFVRTLFVETDKH---------YVEPLHPLTFLPGSNNQFI  326 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEET---TTCCEEEEEEEEECSS---------CCCCCSCCEECTTCSSEEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC---CCCceeeEEEEccCCC---------eECccCCceeecCCCCEEE
Confidence            356788987656677754322    47888875   455 444443211100         111235678888  888 4


Q ss_pred             EEEeC-CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceE-EEEeCCCCEEEEEECCCC----eEEEEECC
Q 024317          118 YVADK-SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFE-LTFVPHICALLISDHGNQ----LIRQINLK  189 (269)
Q Consensus       118 yVaD~-~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~g-ia~~~~~g~LyVaD~~n~----~I~~~~~~  189 (269)
                      |+++. +..+|+.++.++.  ..+... .               ..... +++++++..||++...++    +|++++.+
T Consensus       327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~-~---------------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          327 WQSRRDGWNHLYLYDTTGRLIRQVTKG-E---------------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             EEECTTSSCEEEEEETTSCEEEECCCS-S---------------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             EEEccCCccEEEEEECCCCEEEecCCC-C---------------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            44443 3467888886665  333221 0               11223 788998778888877654    89999887


Q ss_pred             CCeEE
Q 024317          190 PEDCS  194 (269)
Q Consensus       190 ~~~~~  194 (269)
                      +....
T Consensus       391 ~~~~~  395 (706)
T 2z3z_A          391 GGKTK  395 (706)
T ss_dssp             CCCCE
T ss_pred             CCCce
Confidence            65433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.64  E-value=0.17  Score=42.67  Aligned_cols=111  Identities=10%  Similarity=0.082  Sum_probs=73.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .-.+|+++| ++.+.++-...+.|..+|+   .++. +..+.+.              -..-..+++.++++++++=...
T Consensus        15 ~V~~~~fsp-~~~~l~s~~~dg~v~lWd~---~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           15 RVKGIDFHP-TEPWVLTTLYSGRVELWNY---ETQVEVRSIQVT--------------ETPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEET---TTTEEEEEEECC--------------SSCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECC-CCCEEEEEcCCCcEEEEEC---CCCceeEEeecc--------------CCcEEEEEEeCCCCEEEEECCC
Confidence            468899986 5666666666789999985   3444 3333221              0123568888899977777778


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      +.|+.++.. +.  ..+.+.                -.....|+++|+ +.++++-...+.|+.++.+..
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h----------------~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAH----------------PDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECC----------------SSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGT
T ss_pred             CEEEEEECCCCcEEEEEeCC----------------CCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCC
Confidence            899999954 44  333332                123578999998 555555556788999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.64  E-value=0.098  Score=45.93  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCC-----ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-----SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVA  120 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~-----g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVa  120 (269)
                      ..++++++.+++++++-...+.|..+|+.....     ..+..+.+              .-.....+++.+++ +++++
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG--------------HTKRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC--------------CSSCEEEEEECSSBTTEEEE
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC--------------CCCeEEEEEECcCCCCEEEE
Confidence            467888764666766666678888888631100     11222221              12355789999987 57766


Q ss_pred             eCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          121 DKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       121 D~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      -...+.|+.++.. +.  ..+....              .-.....+++++++..|+++. .++.|+.++........
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGPDV--------------HPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECTTT--------------CCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTTTEEEE
T ss_pred             EcCCCEEEEEECCCCCccEEEecCC--------------CCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCCCceee
Confidence            6667889999854 33  2321010              013457899999744455544 56889999988765543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.61  E-value=0.14  Score=48.77  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -..+++++ ++.+.++-+..+.|+.+|+   .++. +..+.+.              -..-.++++++++..+++=...+
T Consensus       433 v~~v~~s~-~g~~l~sgs~Dg~v~vwd~---~~~~~~~~~~~h--------------~~~v~~~~~s~~~~~l~s~s~D~  494 (694)
T 3dm0_A          433 VEDVVLSS-DGQFALSGSWDGELRLWDL---AAGVSTRRFVGH--------------TKDVLSVAFSLDNRQIVSASRDR  494 (694)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEET---TTTEEEEEEECC--------------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEEC---CCCcceeEEeCC--------------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            35677764 6666666666788888875   3443 3333322              12346789999998777777788


Q ss_pred             EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCC-CEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI-CALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~-g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .|+.++..+.  ..+.....            ..-....+++++++. ..++++-...+.|+.++............   
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---  559 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGE------------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---  559 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTT------------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---
T ss_pred             EEEEEECCCCcceeeccCCC------------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---
Confidence            9999987665  23322111            012235688888863 24556655678899999876554332211   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                                 .-.....++++++|++.++- .+|.+
T Consensus       560 -----------h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          560 -----------HTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             -----------CSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             -----------CCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence                       11235567777777655543 34433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.57  E-value=0.069  Score=47.50  Aligned_cols=112  Identities=18%  Similarity=0.284  Sum_probs=73.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...++++| ++.++++-+..+.|..+|+   .+++. .++.+              .-....+++++++|.++++=...+
T Consensus       111 V~~~~~~p-~~~~l~s~s~Dg~i~vwd~---~~~~~~~~l~~--------------h~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          111 VTRVIFHP-VFSVMVSASEDATIKVWDY---ETGDFERTLKG--------------HTDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             EEEEEECS-SSSEEEEEESSSCEEEEET---TTCCCCEEECC--------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEEC---CCCcEEEEEec--------------cCCcEEEEEEcCCCCEEEEEeCCC
Confidence            45678865 5667777767788888885   33432 22221              122446799999999888777778


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      .|+.++..+.   .++.+.                -.....++++|+ +..+++-...+.|+.++......
T Consensus       173 ~i~iwd~~~~~~~~~~~~h----------------~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGH----------------DHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             CCCEEETTSSCEEECCCCC----------------SSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEeCCCCceeEEEcCC----------------CCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE
Confidence            8888886553   222111                123578999997 55555555678899999876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.53  E-value=0.25  Score=40.27  Aligned_cols=74  Identities=9%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             CceEEEcCCCC-EEEEeCCCC--EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC--
Q 024317          106 PKSFAVDMKGN-IYVADKSNH--VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH--  178 (269)
Q Consensus       106 P~giavd~~G~-lyVaD~~n~--~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~--  178 (269)
                      ...+++.++|. |+++....+  +|+.++.++.  ..+...                -..+..++++|++..|+++..  
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~~~  194 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG----------------EGRNDGPDYSPDGRWIYFNSSRT  194 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS----------------SSCEEEEEECTTSSEEEEEECTT
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC----------------CCccccceECCCCCEEEEEecCC
Confidence            56678988988 554544444  5556665543  222211                134578999998666776643  


Q ss_pred             CCCeEEEEECCCCeEEE
Q 024317          179 GNQLIRQINLKPEDCSK  195 (269)
Q Consensus       179 ~n~~I~~~~~~~~~~~~  195 (269)
                      +..+|+.++..+.....
T Consensus       195 ~~~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          195 GQMQIWRVRVDGSSVER  211 (297)
T ss_dssp             SSCEEEEEETTSSCEEE
T ss_pred             CCccEEEECCCCCCcEE
Confidence            45577888766655443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.52  E-value=0.29  Score=43.30  Aligned_cols=114  Identities=15%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -..+++.| +++.+++-+..+.|..+|+   .++. +.++.+.              -..-..++++++|.++++-...+
T Consensus       195 V~~v~~~p-~~~~l~s~s~D~~i~~wd~---~~~~~~~~~~~h--------------~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          195 VSSVSIMP-NGDHIVSASRDKTIKMWEV---QTGYCVKTFTGH--------------REWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             EEEEEECS-SSSEEEEEETTSEEEEEET---TTCCEEEEEECC--------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEeC-CCCEEEEEeCCCeEEEEEC---CCCcEEEEEeCC--------------CccEEEEEECCCCCEEEEEcCCC
Confidence            45677765 5555666666778888875   2343 3333321              12345688888899887777778


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCC-------------------CCEEEEEECCCCeE
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-------------------ICALLISDHGNQLI  183 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-------------------~g~LyVaD~~n~~I  183 (269)
                      .|+.++....   ..+.+..                .....++++|+                   .+.++++-...+.|
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHR----------------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCS----------------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             eEEEEECCCCceeeEecCCC----------------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            8888885432   2332211                11234444442                   14456666667789


Q ss_pred             EEEECCCCeEE
Q 024317          184 RQINLKPEDCS  194 (269)
Q Consensus       184 ~~~~~~~~~~~  194 (269)
                      +.++.......
T Consensus       321 ~iwd~~~~~~~  331 (410)
T 1vyh_C          321 KMWDVSTGMCL  331 (410)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCceE
Confidence            99987765443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.18  Score=41.87  Aligned_cols=105  Identities=10%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ....+++.+++.++.+ ...+.|+.++.. +.  ..+.+.                -.....++++++ +.|+.+. .++
T Consensus       186 ~i~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~-~~l~~~~-~dg  246 (313)
T 3odt_A          186 VVRHLAVVDDGHFISC-SNDGLIKLVDMHTGDVLRTYEGH----------------ESFVYCIKLLPN-GDIVSCG-EDR  246 (313)
T ss_dssp             CEEEEEEEETTEEEEE-ETTSEEEEEETTTCCEEEEEECC----------------SSCEEEEEECTT-SCEEEEE-TTS
T ss_pred             cEEEEEEcCCCeEEEc-cCCCeEEEEECCchhhhhhhhcC----------------CceEEEEEEecC-CCEEEEe-cCC
Confidence            4567889888885544 457899999964 43  333221                134578999997 5655554 468


Q ss_pred             eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCccccc
Q 024317          182 LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPPL  242 (269)
Q Consensus       182 ~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~~  242 (269)
                      .|+.++............              .-.....+++.++|.+.++..+|.+.-..
T Consensus       247 ~v~iwd~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~dg~i~iw~  293 (313)
T 3odt_A          247 TVRIWSKENGSLKQVITL--------------PAISIWSVDCMSNGDIIVGSSDNLVRIFS  293 (313)
T ss_dssp             EEEEECTTTCCEEEEEEC--------------SSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             EEEEEECCCCceeEEEec--------------cCceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence            899999766544332211              01235678888888877777776665444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.078  Score=46.27  Aligned_cols=122  Identities=10%  Similarity=-0.034  Sum_probs=74.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC-CEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G-~lyVaD~~n  124 (269)
                      ....+++++.++.++++-...+.|..+|+   ..++..........       ....-.....+++++++ .++++-...
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d  236 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDL---KAKKEVIHLSYTSP-------NSGIKQQLSVVEWHPKNSTRVATATGS  236 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEET---TTTEEEEEECCCCC-------SSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEEC---CCCCcceEEecccc-------ccccCCceEEEEECCCCCCEEEEEECC
Confidence            45678997655788888777888999986   34443333211000       00012346789999987 466665555


Q ss_pred             C---EEEEEeCCcc----eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 H---VIRKITNLGV----TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~---~I~~~~~~g~----~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +   .|+.++....    ..+. +.                -.....++++|.++.++++-..++.|+.++......
T Consensus       237 ~~~~~i~~~d~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~  297 (416)
T 2pm9_A          237 DNDPSILIWDLRNANTPLQTLNQGH----------------QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ  297 (416)
T ss_dssp             SSSCCCCEEETTSTTSCSBCCCSCC----------------SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred             CCCceEEEEeCCCCCCCcEEeecCc----------------cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence            5   8888885431    1111 11                234678999983366666666678999999776543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.42  E-value=0.053  Score=47.31  Aligned_cols=115  Identities=11%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~  125 (269)
                      ...|++++ ++..+++-...+.|+.+|.   .+++......             ..-.....+++.+++. ++++-..++
T Consensus       142 V~~v~~sp-dg~~l~sgs~dg~v~iwd~---~~~~~~~~~~-------------~h~~~v~~v~~s~~~~~~~~s~~~dg  204 (357)
T 4g56_B          142 VKTLSVFS-DGTQAVSGGKDFSVKVWDL---SQKAVLKSYN-------------AHSSEVNCVAACPGKDTIFLSCGEDG  204 (357)
T ss_dssp             EEEEEECS-SSSEEEEEETTSCEEEEET---TTTEEEEEEC-------------CCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred             EEEEEECC-CCCEEEEEeCCCeEEEEEC---CCCcEEEEEc-------------CCCCCEEEEEEccCCCceeeeeccCC
Confidence            35677865 5565566556677888874   3444333221             1122446788887765 677666677


Q ss_pred             EEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          126 VIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       126 ~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .|+.+|... . .......             ..-..+..++++|+++.++++-..++.|+.++....
T Consensus       205 ~v~~wd~~~~~~~~~~~~~-------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          205 RILLWDTRKPKPATRIDFC-------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             CEEECCTTSSSCBCBCCCT-------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             ceEEEECCCCceeeeeeec-------------cccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence            888887532 2 1111000             011346789999886777766556778999987654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.32  E-value=0.44  Score=40.83  Aligned_cols=115  Identities=10%  Similarity=0.041  Sum_probs=68.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -..+++++ ++.+.++-...+.|+.+|+   .+++ +..+.+.              -.....++++++|+.+++=...+
T Consensus        79 V~~~~~~~-~~~~l~s~s~D~~v~lwd~---~~~~~~~~~~~h--------------~~~v~~v~~sp~~~~l~s~~~d~  140 (343)
T 2xzm_R           79 VSDLALSQ-ENCFAISSSWDKTLRLWDL---RTGTTYKRFVGH--------------QSEVYSVAFSPDNRQILSAGAER  140 (343)
T ss_dssp             EEEEEECS-STTEEEEEETTSEEEEEET---TSSCEEEEEECC--------------CSCEEEEEECSSTTEEEEEETTS
T ss_pred             eEEEEECC-CCCEEEEEcCCCcEEEEEC---CCCcEEEEEcCC--------------CCcEEEEEECCCCCEEEEEcCCC
Confidence            35678864 6667777777888999986   3444 3344322              12346799999998776666678


Q ss_pred             EEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCC---------CEEEEEECCCCeEEEEECCCC
Q 024317          126 VIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI---------CALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       126 ~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~---------g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .|+.++..+. ........            ..-.....++++|+.         +.++++-...+.|+.++....
T Consensus       141 ~i~~wd~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  204 (343)
T 2xzm_R          141 EIKLWNILGECKFSSAEKE------------NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ  204 (343)
T ss_dssp             CEEEEESSSCEEEECCTTT------------SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE
T ss_pred             EEEEEeccCCceeeeeccc------------CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc
Confidence            8999987654 22111000            001223456666652         134555555678888885543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.31  E-value=0.35  Score=42.19  Aligned_cols=156  Identities=11%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCCCE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSNHV  126 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n~~  126 (269)
                      ..+++.+.++..+++-+..+.|..+|+   .+++.....+...        ....-.....+++.+ +++++++=...+.
T Consensus       161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~---~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          161 SSCQYVPDQETRLITGSGDQTCVLWDV---TTGQRISIFGSEF--------PSGHTADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CCCBCCSSSSSCEEEECTTSCEEEECT---TTCCEEEEECCCS--------SSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             EEEEEecCCCCEEEEECCCCcEEEEEc---CCCcEEEEeeccc--------CCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence            344554545566677777788999975   3454443332110        001112345677765 7788888777889


Q ss_pred             EEEEeCC--cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          127 IRKITNL--GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       127 I~~~~~~--g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      |+.+|..  +.  ..+.+.                -...+.|+++|+ +..+++-...+.|+.++...............
T Consensus       230 v~~wd~~~~~~~~~~~~~h----------------~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          230 VRLWDLRITSRAVRTYHGH----------------EGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             EEEEETTTTCCCCEEECCC----------------SSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred             EEEEECCCCCcceEEECCc----------------CCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence            9999853  22  344332                123578999998 67777777788999999887655433222101


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                      ....       .......+++.++|++.++- .+|.+
T Consensus       293 ~~~~-------~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          293 RNDN-------ELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             SSCC-------SSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             cccc-------ccCceEEEEECCCCCEEEEEECCCCE
Confidence            1000       11224567777777544443 34433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.31  E-value=0.27  Score=42.18  Aligned_cols=73  Identities=14%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ....+++.+++.++++-...+.|+.+|.. +.  .++.+.                -...++|+++|+ +.++++-...+
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h----------------~~~v~~v~~~p~-~~~l~s~s~d~  248 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH----------------ESDINAICFFPN-GNAFATGSDDA  248 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTS
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC----------------cCCEEEEEEcCC-CCEEEEEcCCC
Confidence            34679999999988888778899999853 43  333322                124578999998 56666666678


Q ss_pred             eEEEEECCCCeEE
Q 024317          182 LIRQINLKPEDCS  194 (269)
Q Consensus       182 ~I~~~~~~~~~~~  194 (269)
                      .|+.++.......
T Consensus       249 ~v~iwd~~~~~~~  261 (340)
T 1got_B          249 TCRLFDLRADQEL  261 (340)
T ss_dssp             CEEEEETTTTEEE
T ss_pred             cEEEEECCCCcEE
Confidence            8999998765543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.23  E-value=0.32  Score=41.19  Aligned_cols=113  Identities=6%  Similarity=0.033  Sum_probs=73.1

Q ss_pred             CcceEEEecCC--CeEEEEeCCCCEEEEEecCCCCCccE--EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           46 NPHSVIDRPGS--SDLIVLDSSRSAFYTLSFPLSEESVV--KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        46 ~P~giav~~~~--g~lyV~D~~~~~I~~~dl~~~~~g~~--~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      .-..+++++..  +.++++-...+.|+.+|+.  ..+..  ..+.+.              -.....+++.++++++++=
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQTIPKAQQMH--------------TGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEEC--TTSCEEEEEEEEC--------------SSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcC--CCCceeEEEeccc--------------cCCEEEEEECcCCCEEEEE
Confidence            45778997654  6777777778889999863  32433  233221              2245789999999866666


Q ss_pred             CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEE--eCCCCEEEEEECCCCeEEEEECCCC
Q 024317          122 KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTF--VPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       122 ~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~--~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      ..++.|+.++....  ....+.                -.....+++  +++ +.++++-..++.|+.++....
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~~~----------------~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIAQH----------------DAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC----------------SSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCS
T ss_pred             cCCCcEEEEEcCCCCceeeccc----------------cCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCC
Confidence            66789999996544  333322                123467887  666 665555555678888887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.035  Score=48.50  Aligned_cols=115  Identities=9%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCC---EEEEEecCCCCCccEEEEEcCCcccCCCCCccc-ccCCCCceEEEcC-CCCEEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRS---AFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGS-ARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~---~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~-~~~~~P~giavd~-~G~lyVa  120 (269)
                      ....+++++.+..++++-...+   .|+.+|+.  .........             . ..-.....+++++ ++.++++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~--~~~~~~~~~-------------~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLR--NANTPLQTL-------------NQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETT--STTSCSBCC-------------CSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCC--CCCCCcEEe-------------ecCccCceeEEEeCCCCCCeEEE
Confidence            3567888764445555555444   77777752  111111100             0 1123457899988 8887777


Q ss_pred             eCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          121 DKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       121 D~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      -...+.|+.++.. +.  ..+.+.                -.....++++|++..++++-...+.|+.++....
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPAR----------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEECS----------------SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             EeCCCCEEEeeCCCCccceeecCC----------------CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            6678899999954 33  333322                1235689999984367777777889999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.18  Score=43.65  Aligned_cols=145  Identities=12%  Similarity=0.074  Sum_probs=85.9

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...+++.+ ++. +++-...+.|+.+|+.   .++ +..+.+              .-.....+++++++.++++-...+
T Consensus       209 ~~~~~~~~-~~~-~~~~~~~g~i~~~d~~---~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          209 GVDVEWVD-DDK-FVIPGPKGAIFVYQIT---EKTPTGKLIG--------------HHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             BSCCEEEE-TTE-EEEECGGGCEEEEETT---CSSCSEEECC--------------CSSCEEEEEEETTTTEEEEEETTS
T ss_pred             eeEEEEcC-CCE-EEEEcCCCeEEEEEcC---CCceeeeecc--------------CCCceEEEEECCCCCEEEEEcCCC
Confidence            56677754 444 4555556778888752   222 222211              112346799999998777666678


Q ss_pred             EEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .|+.++... .  ..+.+.                -.....++++++ + ++++-...+.|+.++............   
T Consensus       270 ~i~i~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---  328 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFYGH----------------SQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIV---  328 (425)
T ss_dssp             CEEEECSSSBSCSEEECCC----------------SSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEEC---
T ss_pred             EEEEEECCCCccceEecCC----------------CccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEeccc---
Confidence            899998543 3  333221                124578999997 5 555555678999999876554332211   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCccccc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRLDPPL  242 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~~~~~  242 (269)
                                 .-.....+++.++|+++++ ..+|.+....
T Consensus       329 -----------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          329 -----------DGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             -----------TTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -----------CCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence                       0123567788888854444 3555555443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.51  Score=40.10  Aligned_cols=120  Identities=11%  Similarity=0.057  Sum_probs=64.0

Q ss_pred             CcceEEEecCC-CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-----------
Q 024317           46 NPHSVIDRPGS-SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-----------  113 (269)
Q Consensus        46 ~P~giav~~~~-g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-----------  113 (269)
                      ....+++++.+ +.++++-...+.|..+|+.....-....+.+              .-.....+++++           
T Consensus       103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~  168 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--------------HAIGVNSASWAPATIEEDGEHNG  168 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--------------CTTCEEEEEECCCC---------
T ss_pred             ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--------------CCCceEEEEEcCccccccccccC
Confidence            34667775431 5555555556777777653111111222211              112335677776           


Q ss_pred             --CCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCC--CEEEEEECCCCeEEEE
Q 024317          114 --KGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI--CALLISDHGNQLIRQI  186 (269)
Q Consensus       114 --~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~--g~LyVaD~~n~~I~~~  186 (269)
                        ++.++++-...+.|+.++.. +.  ......-.            ..-.....++++|+.  +.++++-...+.|+.+
T Consensus       169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE------------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC------------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe------------cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence              57777666667788888742 21  11111000            001345789999973  4555555556789888


Q ss_pred             ECCCC
Q 024317          187 NLKPE  191 (269)
Q Consensus       187 ~~~~~  191 (269)
                      +....
T Consensus       237 d~~~~  241 (379)
T 3jrp_A          237 TQDNE  241 (379)
T ss_dssp             EESST
T ss_pred             eCCCC
Confidence            87664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.15  E-value=0.21  Score=47.97  Aligned_cols=111  Identities=10%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ...+++++|++..|.++ ..++.|..+|.   .++. +..+.+.              -.....++++++|..+++=...
T Consensus        15 ~v~~i~~sp~~~~la~~-~~~g~v~iwd~---~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTT-LYSGRVEIWNY---ETQVEVRSIQVT--------------ETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             CEEEEEECSSSSEEEEE-ETTSEEEEEET---TTTEEEEEEECC--------------SSCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEE-eCCCEEEEEEC---CCCceEEEEecC--------------CCcEEEEEEeCCCCEEEEEeCC
Confidence            57889998744445444 45788999975   3454 3333322              1234689999999865555557


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      +.|++++.. +.  ..+.+.                -.....++++|++..|+++. .++.|+.++.+..
T Consensus        77 g~i~vw~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~  129 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAH----------------PDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENN  129 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECC----------------SSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGT
T ss_pred             CeEEEEECCCCcEEEEEecC----------------CCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCC
Confidence            899999954 44  333322                13467899999844555555 4678999997765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.13  E-value=0.58  Score=40.74  Aligned_cols=60  Identities=12%  Similarity=-0.022  Sum_probs=40.1

Q ss_pred             CceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          160 NDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      ..+.++++|+ |.++++-...+.|+.++............    +         .-.....+++.++|++.++-
T Consensus       271 ~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~----g---------H~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          271 GITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQ----A---------HSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             CEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETT----S---------SSSCEEEEEECTTSCEEEEE
T ss_pred             CeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecC----c---------ccCCEEEEEECCCCCEEEEE
Confidence            3578999998 55555555567899999877654432111    0         11346789999999877764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.11  E-value=0.62  Score=40.56  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....+++++ ++.++++-...+.|+.+|+.  ....+..+.+.              -.....+++++++.++++-...+
T Consensus       141 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~h--------------~~~v~~~~~~~~~~~l~s~~~d~  203 (420)
T 3vl1_A          141 EITKLKFFP-SGEALISSSQDMQLKIWSVK--DGSNPRTLIGH--------------RATVTDIAIIDRGRNVLSASLDG  203 (420)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETT--TCCCCEEEECC--------------SSCEEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEECC-CCCEEEEEeCCCeEEEEeCC--CCcCceEEcCC--------------CCcEEEEEEcCCCCEEEEEcCCC
Confidence            446678865 45555555566778888752  22223333221              22456789989998766666678


Q ss_pred             EEEEEeCC-cc--eEEecCCCCCCC--------CCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          126 VIRKITNL-GV--TTIAGGGSKKEG--------RADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       126 ~I~~~~~~-g~--~~~~g~~~~~~~--------~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      .|+.++.. +.  ..+.........        ..........-.....++++++ +.++++-..++.|+.++.......
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEE
T ss_pred             cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCcee
Confidence            88888854 43  333221100000        0000000001123345667777 555555555778999998765433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.11  E-value=0.52  Score=39.63  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCCEEEEeCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVADKSN  124 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~lyVaD~~n  124 (269)
                      -..++++|.++.++++-...+.|..+|+.  .......+...             .-..-..+.+.+  ++.++++-...
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~--~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTG-------------QERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETT--CSSCSEEEECC-------------CTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECC--CCCccceeccC-------------CcCcEEEEEEEEcCCCCEEEEEcCC
Confidence            35667765556666666666777777752  11111111110             001112344543  56666666667


Q ss_pred             CEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          125 HVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       125 ~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      +.|+.+|... .  .++.+.                -.....++++|+ +.++++-...+.|+.++........
T Consensus       208 ~~i~iWd~~~~~~~~~~~~h----------------~~~v~~~~~~p~-~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          208 LTIKIWDYQTKSCVATLEGH----------------MSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECC----------------SSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CeEEEEeCCCCccceeeCCC----------------CCCEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceee
Confidence            8899998543 3  344332                233467889997 5666666667889999987655443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.10  E-value=0.51  Score=44.18  Aligned_cols=122  Identities=18%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...++++|.+...+++-...+.|..+|.   ..++.......             .-.....+++.++|.++++=...+.
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~---~~~~~~~~l~~-------------H~~~V~~v~fspdg~~las~s~D~~  213 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEG---PPFKFKSTFGE-------------HTKFVHSVRYNPDGSLFASTGGDGT  213 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEET---TTBEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEEC---CCCeEeeeecc-------------ccCceEEEEECCCCCEEEEEECCCc
Confidence            4567776644445666666777777763   34443332211             1224578999999998888777889


Q ss_pred             EEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          127 IRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       127 I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      |+.++. +|. ..........        ..+.-....+++++|+ +.++++-...+.|+.++......
T Consensus       214 i~lwd~~~g~~~~~~~~~~~~--------~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          214 IVLYNGVDGTKTGVFEDDSLK--------NVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EEEEETTTCCEEEECBCTTSS--------SCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCCcEeeeecccccc--------ccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCce
Confidence            999984 454 2222110000        0001234678999998 66666666678899999876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.10  E-value=0.17  Score=47.42  Aligned_cols=109  Identities=9%  Similarity=0.008  Sum_probs=64.4

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ....|++.++|.+.++-...+.|+.++.... ....... ..          ..-...+.++++|+ +..+++-...+.|
T Consensus       493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~-~~----------~H~~~V~~v~fspd-g~~lasgs~D~~v  560 (611)
T 1nr0_A          493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-WT----------FHTAKVACVSWSPD-NVRLATGSLDNSV  560 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-CC----------CCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred             ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee-ee----------ecccceeEEEECCC-CCEEEEEECCCcE
Confidence            4578999999997777667788888885431 1111000 00          00134578999998 6666665567789


Q ss_pred             EEEECCCCe-EE-EecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCc
Q 024317          184 RQINLKPED-CS-KSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL  238 (269)
Q Consensus       184 ~~~~~~~~~-~~-~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~  238 (269)
                      +.++.+... .. .....   ..          ......+++.++|.|..+..++.+
T Consensus       561 ~lW~~~~~~~~~~~~~~~---h~----------~~~v~~v~fs~d~~l~s~~~D~~i  604 (611)
T 1nr0_A          561 IVWNMNKPSDHPIIIKGA---HA----------MSSVNSVIWLNETTIVSAGQDSNI  604 (611)
T ss_dssp             EEEETTCTTSCCEEETTS---ST----------TSCEEEEEEEETTEEEEEETTSCE
T ss_pred             EEEECCCcccccchhhcc---Cc----------ccCeeEEEEcCCCEEEEecCCCCE
Confidence            999986532 11 11110   00          133567788888885555555443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.09  E-value=0.41  Score=45.29  Aligned_cols=108  Identities=12%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ..+..++++|+ +.+.++.  ++.|+.+|+   .+++...+....              ..+..++++++|+ |+++  .
T Consensus        82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~---~~~~~~~l~~~~--------------~~~~~~~~SpdG~~la~~--~  139 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDM---LARKVTYLFDTN--------------EETASLDFSPVGDRVAYV--R  139 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE--TTEEEEEET---TTTEEEEEECCT--------------TCCTTCEECTTSSEEEEE--E
T ss_pred             cCceeEEECCC-CeEEEEE--CCEEEEEEC---CCCceEEccCCc--------------ccccCCcCCCCCCEEEEE--E
Confidence            35788999876 7777664  388999985   456655544221              1345678888887 4443  3


Q ss_pred             CCEEEEEeCCc------c-eEEecCCCCCC--CCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          124 NHVIRKITNLG------V-TTIAGGGSKKE--GRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       124 n~~I~~~~~~g------~-~~~~g~~~~~~--~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      ++.|+.++.++      . ..+...+....  +.+   ..+..+..+.+++++|++..|+++.
T Consensus       140 ~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~---~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          140 NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA---VHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC---CGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             CCeEEEEecCcccccCCCcEEeccCCCCCeEcccc---hhhhhcCCCceEEECCCCCEEEEEE
Confidence            46788887543      3 32222111100  000   1122355678999999976777764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=96.08  E-value=0.062  Score=49.93  Aligned_cols=104  Identities=8%  Similarity=0.009  Sum_probs=60.1

Q ss_pred             ceEEEcCCCCEEE--Ee-CCC-CEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          107 KSFAVDMKGNIYV--AD-KSN-HVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       107 ~giavd~~G~lyV--aD-~~n-~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ..++++++|...+  ++ ..+ ..|++++.+ |. ..+.+..                .....++++|++..|+.++..+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~----------------~~~~~~~~SpDG~~l~~~~~~~  216 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE----------------GSFSSASISPGMKVTAGLETAR  216 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS----------------CEEEEEEECTTSCEEEEEECSS
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC----------------CccccceECCCCCEEEEccCCC
Confidence            6788999998444  22 222 568889854 44 5554321                1236889999966778666543


Q ss_pred             -CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          181 -QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       181 -~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                       .+|++++.+++........    . ...  .......+...+++++|.+|++-
T Consensus       217 ~~~i~~~d~~~~~~~~~~~~----~-~~~--~~~~~~~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          217 EARLVTVDPRDGSVEDLELP----S-KDF--SSYRPTAITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             CEEEEEECTTTCCEEECCCS----C-SHH--HHHCCSEEEEEEECTTSCEEEEE
T ss_pred             eeEEEEEcCCCCcEEEccCC----C-cCh--hhhhhccccceeEcCCCcEEEEE
Confidence             3799999887765522111    0 000  00011223455578888666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.07  E-value=0.42  Score=45.78  Aligned_cols=115  Identities=12%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCCEEEEeCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVADKSN  124 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~lyVaD~~n  124 (269)
                      ...++++|.++..+++-...+.|..+|+.  .......+...             .-.....+++.+  ++.++++-..+
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~--~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTG-------------QERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETT--CSSCSEEEECC-------------CTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcceeEEecC-------------CCCCEEEEEEEECCCCCEEEEEeCC
Confidence            45566654355555555556667777642  11111111110             112446688877  88877777778


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +.|+.++.. +.  ..+.+.                -.....++++|+ +.++++-..++.|+.++......
T Consensus       208 g~i~~~d~~~~~~~~~~~~~----------------~~~v~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          208 LTIKIWDYQTKSCVATLEGH----------------MSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECC----------------SSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCSE
T ss_pred             CEEEEEECCCCcEEEEEcCC----------------CCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE
Confidence            899999854 33  333221                234578899987 55555555567899998876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.07  E-value=0.57  Score=44.55  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=91.2

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCC-----EEEEEecCCCCCccEEEEEcCC-cc----cCC-CCCccc--ccC---CCCc
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRS-----AFYTLSFPLSEESVVKRLAGDG-VQ----GYS-DGEPGS--ARF---DKPK  107 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~-----~I~~~dl~~~~~g~~~~~~g~g-~~----g~~-dg~~~~--~~~---~~P~  107 (269)
                      ...+..++++|++..|+++....+     .|+.+|+   .+|+...+.... ..    ... +.....  ..+   ....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI---GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEET---TTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEEC---CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            446889999876666777765233     8999985   456655444221 00    000 000000  000   1246


Q ss_pred             eEEEcCCCC-EEEEeCCCCEEEEEeCCc----c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          108 SFAVDMKGN-IYVADKSNHVIRKITNLG----V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       108 giavd~~G~-lyVaD~~n~~I~~~~~~g----~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      .++++++|. |+++..  +.|+.++.++    . ..+...                -..+..++++|++..|+++.  ++
T Consensus       113 ~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~~SPDG~~la~~~--~~  172 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG----------------EGFATDAKLSPKGGFVSFIR--GR  172 (741)
T ss_dssp             CCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS----------------SSCEEEEEECTTSSEEEEEE--TT
T ss_pred             eeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC----------------CcccccccCCCCCCEEEEEe--CC
Confidence            789999998 666654  7888888543    2 111111                12467899999966676665  35


Q ss_pred             eEEEEECCCCeEEEecccCccC--CCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          182 LIRQINLKPEDCSKSSQSGSAL--GAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       182 ~I~~~~~~~~~~~~~~~~g~~~--g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                      .|+.++.+++........+...  .....|.....+..+.++++.+|| .|+++.
T Consensus       173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            7999998887655443221000  000011100112346789999999 466664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.07  E-value=0.67  Score=40.55  Aligned_cols=74  Identities=12%  Similarity=0.043  Sum_probs=52.1

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC--C
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH--G  179 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~--~  179 (269)
                      ...++++++++.++++-...+.|+.++....   ..+.+.                -.....++++|++..++++-.  .
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----------------~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH----------------NAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC----------------SSCCCEEEECTTSTTEEEEECCTT
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC----------------cceEEEEEECCCCCCEEEEecCCC
Confidence            4578999999987777666788999986543   222221                134578999997677888754  5


Q ss_pred             CCeEEEEECCCCeEE
Q 024317          180 NQLIRQINLKPEDCS  194 (269)
Q Consensus       180 n~~I~~~~~~~~~~~  194 (269)
                      ++.|+.++.......
T Consensus       283 d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          283 DKQIHFWNAATGARV  297 (401)
T ss_dssp             TCEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCCEE
Confidence            788999998765443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.07  E-value=0.44  Score=45.21  Aligned_cols=121  Identities=15%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC--CccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--ESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~--~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      ..-..|++++.+++++++-+..+.|..+++....  .+.. ..+.|.              -..-.+++++++|++.++=
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------------~~~v~~v~~s~~g~~l~sg  448 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------------SHFVEDVVLSSDGQFALSG  448 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------------SSCEEEEEECTTSSEEEEE
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------------CCcEEEEEECCCCCEEEEE
Confidence            3457788866567888888888999999863111  1221 122211              2244679999999988877


Q ss_pred             CCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          122 KSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       122 ~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      ...+.|+.++.. +.  ..+.+.                -....+++++++ +..+++-...+.|+.++..+......
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~~h----------------~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFVGH----------------TKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECC----------------SSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             eCCCcEEEEECCCCcceeEEeCC----------------CCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceee
Confidence            778899999954 43  344332                123578999998 55555555578899999877654443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.28  Score=43.85  Aligned_cols=116  Identities=14%  Similarity=0.098  Sum_probs=71.0

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ...++++++.+..|+++-...+.|..||+.. .++. +..+.+.            ..-..+.+++++++|. |++++. 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-~~~~~~~~~~~~------------~~~~~v~~~~~sp~~~~l~~~~~-  169 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDK-TSKNVLKLRKRF------------CFSKRPNAISIAEDDTTVIIADK-  169 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECS-SSSSCEEEEEEE------------ECSSCEEEEEECTTSSEEEEEET-
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcC-CCCceeeeeecc------------cCCCCceEEEEcCCCCEEEEEeC-
Confidence            4678999875555567776778898888631 1333 3333211            0113567899999998 555554 


Q ss_pred             CCEEEEEeCCc-c-e-----EEecCCCCCCCCCCCccccccccCceEEEEeCC---CCEEEEEECCCCeEEEEECCCCe
Q 024317          124 NHVIRKITNLG-V-T-----TIAGGGSKKEGRADGPAQNASFSNDFELTFVPH---ICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       124 n~~I~~~~~~g-~-~-----~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~---~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      .+.|+.++... . .     .+.+                .-...++|+++|+   +..|+.++. .+.|+.++.....
T Consensus       170 ~g~v~~~~~~~~~~~~~~~~~~~~----------------h~~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~  231 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFTQEPILG----------------HVSMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCF  231 (450)
T ss_dssp             TSEEEEEETTSCCCSSCCCCCSEE----------------CSSCEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTT
T ss_pred             CCcEEEEecCCcccccccceeeec----------------ccCceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCc
Confidence            67888887432 2 1     1111                1234678999987   445555554 5789999876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.04  E-value=0.24  Score=42.70  Aligned_cols=144  Identities=14%  Similarity=0.065  Sum_probs=77.9

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      -..++++| ++.++++-...+.|..++.. ....+ +..+.+              .-.....+++.++|+++++=...+
T Consensus        64 v~~~~~sp-~g~~l~s~s~D~~v~iw~~~-~~~~~~~~~~~~--------------h~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           64 VRKVAWSP-CGNYLASASFDATTCIWKKN-QDDFECVTTLEG--------------HENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEEEC-CC-EEEEEEECC--------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECC-CCCEEEEEECCCcEEEEEcc-CCCeEEEEEccC--------------CCCCceEEEEeCCCCEEEEEECCC
Confidence            46688876 55555555555666666542 11111 222211              112446899999999777766677


Q ss_pred             EEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .|+.++... .  ..+.-..             ..-.....++++|+ +.++++-...+.|+.++............   
T Consensus       128 ~v~iwd~~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~~~~---  190 (345)
T 3fm0_A          128 SVWVWEVDEEDEYECVSVLN-------------SHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATL---  190 (345)
T ss_dssp             CEEEEEECTTSCEEEEEEEC-------------CCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEEEEE---
T ss_pred             eEEEEECCCCCCeEEEEEec-------------CcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEEEEe---
Confidence            888887432 1  1111100             00123468899998 55555545567788888665532211110   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEE
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYII  232 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVa  232 (269)
                      .+         .-.....++++++|+..++
T Consensus       191 ~~---------h~~~v~~l~~sp~g~~l~s  211 (345)
T 3fm0_A          191 EG---------HESTVWSLAFDPSGQRLAS  211 (345)
T ss_dssp             CC---------CSSCEEEEEECTTSSEEEE
T ss_pred             cC---------CCCceEEEEECCCCCEEEE
Confidence            00         1133567888888865444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.97  E-value=0.43  Score=43.75  Aligned_cols=150  Identities=9%  Similarity=-0.059  Sum_probs=86.0

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ..+..++++  +..++++....+.|+.+|+   .++.... .-           ....-.....++++++|.++++-...
T Consensus       447 ~~~~~~~~~--~~~l~~~~~~d~~i~~~~~---~~~~~~~-~~-----------~~~~~~~v~~~~~s~~g~~l~~~~~d  509 (615)
T 1pgu_A          447 SPGSAVSLS--QNYVAVGLEEGNTIQVFKL---SDLEVSF-DL-----------KTPLRAKPSYISISPSETYIAAGDVM  509 (615)
T ss_dssp             SCEEEEEEC--SSEEEEEETTTSCEEEEET---TEEEEEE-EC-----------SSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEc--CCEEEEeecCCCeEEEEEC---CCccccc-cc-----------cCCccCceEEEEECCCCCEEEEcCCC
Confidence            356778873  4444444432677888874   2333321 10           01122356789999999977776667


Q ss_pred             CEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeC----------CCCEEEEEECCCCeEEEEECCCC-eE
Q 024317          125 HVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVP----------HICALLISDHGNQLIRQINLKPE-DC  193 (269)
Q Consensus       125 ~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~----------~~g~LyVaD~~n~~I~~~~~~~~-~~  193 (269)
                      +.|+.++......+.....            ..-...+.++++|          + +.++++-..++.|+.++.... ..
T Consensus       510 g~i~iw~~~~~~~~~~~~~------------~h~~~v~~~~~sp~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~  576 (615)
T 1pgu_A          510 GKILLYDLQSREVKTSRWA------------FRTSKINAISWKPAEKGANEEEIE-EDLVATGSLDTNIFIYSVKRPMKI  576 (615)
T ss_dssp             SCEEEEETTTTEEEECCSC------------CCSSCEEEEEECCCC------CCS-CCEEEEEETTSCEEEEESSCTTCC
T ss_pred             CeEEEeeCCCCcceeEeec------------CCCCceeEEEEcCccccccccccC-CCEEEEEcCCCcEEEEECCCCcee
Confidence            8999999644322111100            0123467899999          7 555555555678999998764 22


Q ss_pred             EEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCc
Q 024317          194 SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL  238 (269)
Q Consensus       194 ~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~  238 (269)
                      ......              .-.....+++.++|.|..+..+|.+
T Consensus       577 ~~~~~~--------------h~~~v~~l~~s~~~~l~s~~~d~~v  607 (615)
T 1pgu_A          577 IKALNA--------------HKDGVNNLLWETPSTLVSSGADACI  607 (615)
T ss_dssp             EEETTS--------------STTCEEEEEEEETTEEEEEETTSCE
T ss_pred             chhhhc--------------CccceEEEEEcCCCCeEEecCCceE
Confidence            211111              1134677888888885445455544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.95  E-value=0.36  Score=48.93  Aligned_cols=145  Identities=9%  Similarity=0.022  Sum_probs=87.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .-..+++++ ++.++++-...+.|..+|.   .+++. ..+.+.              -.....++++++|.+.++=...
T Consensus       617 ~v~~~~~s~-~~~~l~s~~~d~~i~vw~~---~~~~~~~~~~~h--------------~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          617 AVYHACFSQ-DGQRIASCGADKTLQVFKA---ETGEKLLDIKAH--------------EDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET---TTCCEEEEECCC--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECC-CCCEEEEEeCCCeEEEEEC---CCCCEEEEeccC--------------CCCEEEEEEecCCCEEEEEeCC
Confidence            456789976 5655566556778888885   34443 333211              1245779999999877776678


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC-CCEEEEEECCCCeEEEEECCCCeEEEecccC
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH-ICALLISDHGNQLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~-~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g  200 (269)
                      +.|+.++.. +.  ..+.+.                -.....++++++ ++.++++-..++.|+.++.+.......... 
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-  741 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEH----------------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-  741 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECC----------------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-
T ss_pred             CeEEEEECCCCceEEEEcCC----------------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-
Confidence            899999964 43  333332                123467888874 245666666678899999876654332211 


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCc
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRL  238 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~  238 (269)
                                   .-.....+++.++|+..++- .+|.+
T Consensus       742 -------------h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          742 -------------HTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             -------------CSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             -------------CCCCEEEEEEecCCCEEEEEECCCeE
Confidence                         11234566777777544433 44433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.78  E-value=0.9  Score=39.72  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=72.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCccc-----ccCCCCceEEEcCCCCEEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGS-----ARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~-----~~~~~P~giavd~~G~lyVa  120 (269)
                      .-..++++| +|.++++-. ++.+..++.   .+|+.............+.....     ..-..-..+++.++|.++++
T Consensus        66 ~V~~v~fsp-dg~~la~g~-~~~v~i~~~---~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           66 VVCCVKFSN-DGEYLATGC-NKTTQVYRV---SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             CCCEEEECT-TSSEEEEEC-BSCEEEEET---TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             EEEEEEECC-CCCEEEEEc-CCcEEEEEe---cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            346789976 566555543 466777764   45554433221100000000000     00012357999999997777


Q ss_pred             eCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          121 DKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       121 D~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      -...+.|+.++....   ..+.+.                -.....++++++ +..+++-...+.|+.++.......
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h----------------~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGH----------------EQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEccC----------------CCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeE
Confidence            777889999996543   233222                123578999998 455555556788999998776543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.71  E-value=0.93  Score=39.40  Aligned_cols=113  Identities=10%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             cceEEEecCCCeEEEEeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...++++|++..+.++.. ..+.|+.+|.   .+++........              ....+|++.++|.++++-..+ 
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~---~~~~~~~~~~~~--------------~~V~~v~fspdg~~l~s~s~~-  197 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDP---SDLTEKFEIETR--------------GEVKDLHFSTDGKVVAYITGS-  197 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEET---TTTEEEEEEECS--------------SCCCEEEECTTSSEEEEECSS-
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeEC---CCCcEEEEeCCC--------------CceEEEEEccCCceEEeccce-
Confidence            457899875555666654 3577888885   455544433211              134689999999977766544 


Q ss_pred             EEEEEe-CCcc-eE-EecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC---eEEEEECCCC
Q 024317          126 VIRKIT-NLGV-TT-IAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ---LIRQINLKPE  191 (269)
Q Consensus       126 ~I~~~~-~~g~-~~-~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~---~I~~~~~~~~  191 (269)
                      .+.+++ ..+. .. ......              -.....++++|++..++.+-..+.   .++.++....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          198 SLEVISTVTGSCIARKTDFDK--------------NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             CEEEEETTTCCEEEEECCCCT--------------TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             eEEEEEeccCcceeeeecCCC--------------CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc
Confidence            455554 4454 21 111100              122468999998434444333222   4666665443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.71  E-value=0.47  Score=40.74  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEE--EEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK--RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~--~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      -..++++| ++.++++-...+.|+.+|+   ..+...  .....+            .-..-..++++++|+++++=...
T Consensus        19 v~~l~~sp-~g~~las~~~D~~i~iw~~---~~~~~~~~~~~~~~------------h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           19 CWFLAWNP-AGTLLASCGGDRRIRIWGT---EGDSWICKSVLSEG------------HQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEECT-TSSCEEEEETTSCEEEEEE---ETTEEEEEEEECSS------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEEc---CCCcceeeeeeccc------------cCCcEEEEEECCCCCEEEEEECC
Confidence            45789976 6777777666788888875   233221  111111            11234679999999977766666


Q ss_pred             CEEEEEeCCcc-----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          125 HVIRKITNLGV-----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       125 ~~I~~~~~~g~-----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      +.|+.++.+..     ..+.+.                -.....++++|+ ++++++-...+.|+.++.+..
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSCEEEEEECTT
T ss_pred             CcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCC-CCEEEEEECCCeEEEEECCCC
Confidence            67777764322     222221                123578999998 555555555678888887643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.70  E-value=0.26  Score=41.72  Aligned_cols=107  Identities=10%  Similarity=0.054  Sum_probs=64.5

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC---CCCEEEEeCCCCEEEEEeC
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM---KGNIYVADKSNHVIRKITN  132 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~---~G~lyVaD~~n~~I~~~~~  132 (269)
                      ++.++++-...+.|..+|+   .+++.......              -.....+++++   +++.+++-...+.|+.++.
T Consensus       179 ~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDL---RNMALRWETNI--------------KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCCEEEEEETTSEEEEEET---TTTEEEEEEEC--------------SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CCCEEEEEccCCeEEEEEC---ccCceeeecCC--------------CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            5666666666788999985   34444333211              12457789988   7886666666788988884


Q ss_pred             Cc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          133 LG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       133 ~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      .. .  ..+.-...           ...-.....++++|++..++++-..++.|+.++...
T Consensus       242 ~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          242 RTQHPTKGFASVSE-----------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEETTTEEEEEEE-----------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             cCCCcccceeeecc-----------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            32 1  22210000           001234578999998333666666678888888654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.70  E-value=0.91  Score=39.18  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCCEEEEeCCC
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVADKSN  124 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~lyVaD~~n  124 (269)
                      ..+++.+ ++..+++-+..+.|..+|+   .+++ +..+.+..              .....+++.+  +|+++++=...
T Consensus       158 ~~~~~~~-~~~~l~t~s~D~~v~lwd~---~~~~~~~~~~~h~--------------~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          158 SACSFTN-SDMQILTASGDGTCALWDV---ESGQLLQSFHGHG--------------ADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             EEEEECS-SSSEEEEEETTSEEEEEET---TTCCEEEEEECCS--------------SCEEEEEECCCSSCCEEEEEETT
T ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEEeC---CCCeEEEEEcCCC--------------CCeEEEEEEeCCCCCEEEEEeCC
Confidence            4667754 4555555566788888885   3444 33343221              1224556654  56766666667


Q ss_pred             CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +.|+.+|.. +.  ..+.+.                -...+.++++|+ +.++++-...+.|+.++......
T Consensus       220 g~v~~wd~~~~~~~~~~~~h----------------~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~  274 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETH----------------ESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADRE  274 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE
T ss_pred             CeEEEEECCCCcEEEEecCC----------------CCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE
Confidence            888888853 43  333221                124578999998 55555555678899999877643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.66  E-value=0.5  Score=45.57  Aligned_cols=143  Identities=16%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...|.. +.+|+|||+....+-|.++|.   .++++..+...+.          ..-..+..+..|++|+||++-.  +-
T Consensus       474 i~~i~~-d~~g~lWi~~~t~~Gl~~~d~---~~~~~~~~~~~~~----------~~~~~~~~i~~d~~g~lWigt~--~G  537 (758)
T 3ott_A          474 INQIIP-DNEGNVWVLLYNNKGIDKINP---RTREVTKLFADEL----------TGEKSPNYLLCDEDGLLWVGFH--GG  537 (758)
T ss_dssp             EEEEEE-CTTSCEEEEETTCSSEEEEET---TTTEEEEECTTTS----------CGGGCEEEEEECTTSCEEEEET--TE
T ss_pred             eeeEEE-cCCCCEEEEccCCCCcEEEeC---CCCceEEecCCCc----------CCCcccceEEECCCCCEEEEec--Cc
Confidence            456777 468999994333456888874   4566665521110          0123567899999999999974  46


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCC
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALG  204 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g  204 (269)
                      +.++++...  ..+. ..        +.    .-+...+|..+  +|+||++-.  +-|.+|++...........   ..
T Consensus       538 l~~~~~~~~~~~~~~-~~--------gl----~~~~i~~i~~~--~g~lWi~t~--~Gl~~~~~~~~~~~~~~~~---~~  597 (758)
T 3ott_A          538 VMRINPKDESQQSIS-FG--------SF----SNNEILSMTCV--KNSIWVSTT--NGLWIIDRKTMDARQQNMT---NK  597 (758)
T ss_dssp             EEEECC--CCCCBCC-CC--------C-------CCEEEEEEE--TTEEEEEES--SCEEEEETTTCCEEEC--C---CC
T ss_pred             eEEEecCCCceEEec-cc--------CC----CccceEEEEEC--CCCEEEECC--CCeEEEcCCCceeEEecCC---CC
Confidence            899997543  2221 10        00    01345677643  489999874  4499999887765543211   00


Q ss_pred             CcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          205 AVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       205 ~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                               .+.  ..+..+++|+||+...+|
T Consensus       598 ---------~~~--~~~~~~~~G~l~fG~~~G  618 (758)
T 3ott_A          598 ---------RFT--SLLFDPKEDCVYLGGADG  618 (758)
T ss_dssp             ---------CCS--EEEEETTTTEEEEECBSE
T ss_pred             ---------cee--eeEEECCCCcEEEecCCc
Confidence                     111  223344678888876544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.65  E-value=0.46  Score=43.55  Aligned_cols=109  Identities=5%  Similarity=-0.028  Sum_probs=68.6

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCc-----cEEEEEcCCcccCCCCCcccccCCC-CceEEEcC--CC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-----VVKRLAGDGVQGYSDGEPGSARFDK-PKSFAVDM--KG  115 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g-----~~~~~~g~g~~g~~dg~~~~~~~~~-P~giavd~--~G  115 (269)
                      -..+..++++|++..+.++.  .+.|..+|+.   ++     ....+.+.              -.. ...+++++  +|
T Consensus        18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~---~~~~~~~~~~~~~~h--------------~~~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLD---DGDSKVPPVVQFTGH--------------GSSVVTTVKFSPIKGS   78 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE--TTEEEEEECC---SSCCSSCSEEEECTT--------------TTSCEEEEEECSSTTC
T ss_pred             cCceeEEEECCCCCEEEEec--CCeEEEEECC---CCCCccccceEEecC--------------CCceEEEEEECcCCCC
Confidence            34678899987555566665  5688888863   33     34444322              123 57899999  99


Q ss_pred             CEEEEeCCCCEEEEEeC-Cc--------c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC---C
Q 024317          116 NIYVADKSNHVIRKITN-LG--------V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN---Q  181 (269)
Q Consensus       116 ~lyVaD~~n~~I~~~~~-~g--------~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n---~  181 (269)
                      +++++=...+.|+.++. .+        .  ..+.+.                -.....+++++++..|+++....   +
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~  142 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL----------------AGPISDISWDFEGRRLCVVGEGRDNFG  142 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC----------------SSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchhhcc----------------cccEEEEEEeCCCCEEEEeccCCCCcc
Confidence            96666555788888885 23        2  222211                12457899999866666665432   4


Q ss_pred             eEEEEE
Q 024317          182 LIRQIN  187 (269)
Q Consensus       182 ~I~~~~  187 (269)
                      .|+.++
T Consensus       143 ~v~~~d  148 (615)
T 1pgu_A          143 VFISWD  148 (615)
T ss_dssp             EEEETT
T ss_pred             EEEEEE
Confidence            677776

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.60  E-value=0.82  Score=39.95  Aligned_cols=114  Identities=9%  Similarity=0.027  Sum_probs=73.7

Q ss_pred             CcceEEEecCCCeEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE--e
Q 024317           46 NPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA--D  121 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa--D  121 (269)
                      ....+++++.+..++++-.  ..+.|..+|+   .+++.......+              .....++++++|..+++  -
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~---~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g  323 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNA---ATGARVNTVDAG--------------SQVTSLIWSPHSKEIMSTHG  323 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEET---TTCCEEEEEECS--------------SCEEEEEECSSSSEEEEEEC
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEEC---CCCCEEEEEeCC--------------CcEEEEEECCCCCeEEEEee
Confidence            4578899876778888755  5788999985   345444332211              24578999999996666  4


Q ss_pred             CCCCEEEEEeCCc-c--eE--EecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          122 KSNHVIRKITNLG-V--TT--IAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       122 ~~n~~I~~~~~~g-~--~~--~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ..++.|+.++... .  ..  +.+.                -.....++++++ +..+++-..++.|+.++......
T Consensus       324 ~~dg~i~v~~~~~~~~~~~~~~~~h----------------~~~v~~~~~s~d-g~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          324 FPDNNLSIWSYSSSGLTKQVDIPAH----------------DTRVLYSALSPD-GRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             TTTCEEEEEEEETTEEEEEEEEECC----------------SSCCCEEEECTT-SSEEEEECTTSEEEEEECCC---
T ss_pred             cCCCcEEEEecCCccceeEEEecCC----------------CCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcc
Confidence            4678888888433 2  22  1121                134578999998 55666666678999999876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.57  E-value=0.96  Score=43.53  Aligned_cols=158  Identities=10%  Similarity=-0.003  Sum_probs=90.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...|+. +.+|+|||+-.  +-+.+++.   .++++..+.-...    .+   ...-+....|+.|++|+|||+-.. +-
T Consensus       375 v~~i~~-d~~g~lWigt~--~GL~~~~~---~~~~~~~~~~~~~----~~---~~~~~~v~~i~~d~~g~lWigT~~-~G  440 (758)
T 3ott_A          375 IRHIYE-DKEQQLWIATD--GSINRYDY---ATRQFIHYNIVDN----TG---TYNTNWTYYIFEDTAGQLWISTCL-GG  440 (758)
T ss_dssp             EEEEEE-CTTSCEEEEET--TEEEEEET---TTTEEEEEEEECC----C-----CBSSSEEEEEECTTSEEEEEESS-SC
T ss_pred             eEEEEE-CCCCCEEEEeC--CcHhhcCc---CCCcEEEeecCCC----cC---CCCCceEEEEEEcCCCCEEEEECC-Cc
Confidence            355666 46899999873  47999974   4566655431100    00   001123467899999999998764 34


Q ss_pred             EEEEeCCcc-----eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          127 IRKITNLGV-----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       127 I~~~~~~g~-----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +.++++...     ..+....  .+...++.    .-.....|..+.+ |+|||+...++-|.++++............ 
T Consensus       441 l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l----~~~~i~~i~~d~~-g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~-  512 (758)
T 3ott_A          441 IFVVDKHKLMQSTSGQYIAEQ--NYSVHNGL----SGMFINQIIPDNE-GNVWVLLYNNKGIDKINPRTREVTKLFADE-  512 (758)
T ss_dssp             EEEEEHHHHHHCCSSEEECSE--EECGGGTC----SCSCEEEEEECTT-SCEEEEETTCSSEEEEETTTTEEEEECTTT-
T ss_pred             eEEEccccccccCCcceeccc--cccccccc----ccceeeeEEEcCC-CCEEEEccCCCCcEEEeCCCCceEEecCCC-
Confidence            777775421     1111000  00000000    0123567887876 899993332345999998876655442110 


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                       ..         .-..+..++.|.+|+||++...|
T Consensus       513 -~~---------~~~~~~~i~~d~~g~lWigt~~G  537 (758)
T 3ott_A          513 -LT---------GEKSPNYLLCDEDGLLWVGFHGG  537 (758)
T ss_dssp             -SC---------GGGCEEEEEECTTSCEEEEETTE
T ss_pred             -cC---------CCcccceEEECCCCCEEEEecCc
Confidence             00         01346789999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.69  Score=38.12  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=60.4

Q ss_pred             CCceEEEcC-CCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          105 KPKSFAVDM-KGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       105 ~P~giavd~-~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ....+++.+ +++++++-..++.|+.++.... ..+....               -.....++++++ +.++++ ..++.
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------~~~i~~~~~~~~-~~~~~~-~~dg~  206 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH---------------NDVVRHLAVVDD-GHFISC-SNDGL  206 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSC---------------SSCEEEEEEEET-TEEEEE-ETTSE
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccC---------------cccEEEEEEcCC-CeEEEc-cCCCe
Confidence            345666666 7776666666788888884333 3333211               234578998887 665444 45678


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcc
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                      |+.++............              .-.....+++.++|.++.+..+|.+.
T Consensus       207 i~i~d~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~l~~~~~dg~v~  249 (313)
T 3odt_A          207 IKLVDMHTGDVLRTYEG--------------HESFVYCIKLLPNGDIVSCGEDRTVR  249 (313)
T ss_dssp             EEEEETTTCCEEEEEEC--------------CSSCEEEEEECTTSCEEEEETTSEEE
T ss_pred             EEEEECCchhhhhhhhc--------------CCceEEEEEEecCCCEEEEecCCEEE
Confidence            99999875543332211              01234556666666665555555444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.54  E-value=0.89  Score=38.01  Aligned_cols=111  Identities=12%  Similarity=0.013  Sum_probs=65.4

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ....|+++++|+++++=...+.|+.++....   ..+.+.                 .....++++++ +.++++- .++
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~-~~~~~~~-~d~  277 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-----------------DIINALCFSPN-RYWLCAA-TGP  277 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-----------------SCEEEEEECSS-SSEEEEE-ETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-----------------ceEEeeecCCC-Cceeecc-CCC
Confidence            3467899999997777667889999986544   222211                 23467787776 5555444 357


Q ss_pred             eEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCcc
Q 024317          182 LIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRLD  239 (269)
Q Consensus       182 ~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~~  239 (269)
                      .|+.++.++...............     ..........+++.++|+..++ ..+|.++
T Consensus       278 ~i~iwd~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          278 SIKIWDLEGKIIVDELKQEVISTS-----SKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             EEEEEETTTTEEEEEECCC------------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEEECCCCeEEEeccccceeee-----ccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            899999887765443221100000     0001234567899999965554 4555544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.43  E-value=0.64  Score=39.95  Aligned_cols=87  Identities=10%  Similarity=0.030  Sum_probs=44.3

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCC-CCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS-DGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~-dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...+++++.+..++++-...+.|..+|+. .....+..+......... ........-.....++++++|+.+++-..++
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADSRVKLWDVR-RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETT-CSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCcEEEEEcCCCcEEEEECC-CCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            35677765444455555556667777653 111122222111000000 0000012233457899999998666666678


Q ss_pred             EEEEEeCCc
Q 024317          126 VIRKITNLG  134 (269)
Q Consensus       126 ~I~~~~~~g  134 (269)
                      .|+.++...
T Consensus       268 ~i~vwd~~~  276 (408)
T 4a11_B          268 RMRLWNSSN  276 (408)
T ss_dssp             CEEEEETTT
T ss_pred             eEEEEECCC
Confidence            899998543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.36  E-value=1.2  Score=38.24  Aligned_cols=113  Identities=8%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC---CCCEEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM---KGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~---~G~lyVaD~  122 (269)
                      ....+++.+.+++++++-...+.|..+|+   .+++........              .....+++.+   ++.++++-.
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDT---NTLQTADVFNFE--------------ETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEET---TTTEEEEEEECS--------------SCEEEEEECSSCSSCCEEEEEE
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeC---CCCccceeccCC--------------CceeeeEeecCCCCCcEEEEEc
Confidence            34678887656667777667788999985   344443332110              1224455554   344555555


Q ss_pred             CCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          123 SNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       123 ~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .++.|+.++.. +.  ..+.+.                -.....++++|++..++++-..++.|+.++....
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGH----------------RQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCC----------------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             CCCeEEEEeCCCcceeeeecCC----------------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            66778888754 33  333221                1235789999985556666556788999998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.25  E-value=1.2  Score=37.69  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC--cc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE--SV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~--g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .-..+++++.+++++++-+..+.|+.+++.....  +. +..+.|.              -..-..+++.++|.+.++=.
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h--------------~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH--------------SHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC--------------SSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC--------------cccEEEEEECCCCCEEEEEe
Confidence            4577888765667888887888888887521010  11 1222221              12346789999999877777


Q ss_pred             CCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          123 SNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       123 ~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      ..+.|+.+|.. +.  ..+.+.                -.....++++++ +.++++-...+.|+.++..+.....
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h----------------~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~~~~~  143 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGH----------------KSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLAT  143 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC----------------SSCEEEEEECTT-SCEEEEEETTSCEEEEETTSCEEEE
T ss_pred             CCCEEEEEECCCCCeeEEEccC----------------CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEE
Confidence            78899999954 44  444432                123568999987 5666666667889999988765543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.25  E-value=1.2  Score=37.56  Aligned_cols=59  Identities=8%  Similarity=0.015  Sum_probs=35.4

Q ss_pred             CceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          160 NDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       160 ~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      ....++++|++..|+.+. ..+.|+.++............              .-.....+++.++|...++-
T Consensus       275 ~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLKTSEQ--------------LDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             CEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEEECCC--------------CSSCEEEEEECTTSSCEEEE
T ss_pred             ceEEEEEecCCCEEEEEc-cCCeEEEEECCCCcEEEEecC--------------CCCCceEEEECCCCCeEEEE
Confidence            356788888744444444 456788888776544332211              11346789999999554443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.69  Score=39.48  Aligned_cols=145  Identities=8%  Similarity=-0.002  Sum_probs=82.7

Q ss_pred             cceEEEecC-CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           47 PHSVIDRPG-SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        47 P~giav~~~-~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ...+++++. +++++++-...+.|..+|+   .+++........            .-.....++++++|.++++=..++
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~---~~~~~~~~~~~~------------~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSY---EDDSQYIVHSAK------------SDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEES---SSSCEEEEECCC------------SSCCCCEEEECTTSCEEEEECTTS
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEEC---CCCcEEEEEecC------------CCCceEEEEECCCCCEEEEEcCCC
Confidence            466777541 5666666666778888875   344443332110            011356899999999888866788


Q ss_pred             EEEEEeCCc-c-e--EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          126 VIRKITNLG-V-T--TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       126 ~I~~~~~~g-~-~--~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .|+.+|... . .  .+.+ .              .-...+.|+++|++..|..+. . +.|+.++............. 
T Consensus       193 ~i~iwd~~~~~~~~~~~~~-~--------------h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~-  254 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPV-D--------------EEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTY-  254 (343)
T ss_dssp             CEEEEESSCTTSCCEECCC-C--------------TTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCC-
T ss_pred             EEEEEECCCCCCCccEEec-c--------------CCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeeccc-
Confidence            999998543 3 2  2221 0              013457899999855555555 3 38999998764321111100 


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEE
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYII  232 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa  232 (269)
                      ....  .     .... ..++++++|+..++
T Consensus       255 ~~~~--~-----~~~~-~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          255 TIPE--F-----KTGT-VTYDIDDSGKNMIA  277 (343)
T ss_dssp             BC------------CC-EEEEECTTSSEEEE
T ss_pred             cccc--c-----cccc-eEEEECCCCCEEEE
Confidence            0000  0     0011 45889999977666

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.24  E-value=1.2  Score=45.00  Aligned_cols=159  Identities=10%  Similarity=0.039  Sum_probs=87.9

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....+++++ ++..+++-+..+.|..+|+   .++......................-.....+++.++|..+++-. ++
T Consensus       745 ~v~~~~~sp-~~~~l~s~s~dg~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~  819 (1249)
T 3sfz_A          745 SVNHCRFSP-DDELLASCSADGTLRLWDV---RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KN  819 (1249)
T ss_dssp             CEEEEEECS-STTEEEEEESSSEEEEEEG---GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TT
T ss_pred             CEEEEEEec-CCCEEEEEECCCeEEEEeC---CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CC
Confidence            456788875 5666666666788998886   233322221111000000000111122456788888998665554 57


Q ss_pred             EEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCcc
Q 024317          126 VIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSA  202 (269)
Q Consensus       126 ~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~  202 (269)
                      .+..++....   ..+...               .-.....++++++ +.++++-..++.|+.++............   
T Consensus       820 ~v~~~d~~~~~~~~~~~~~---------------~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---  880 (1249)
T 3sfz_A          820 KVLLFDIHTSGLLAEIHTG---------------HHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLKVADCRG---  880 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECS---------------SSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEEEEEECC---
T ss_pred             cEEEEEecCCCceeEEcCC---------------CCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceeeecCC---
Confidence            8888885433   222211               1234578999998 55666666678899999887655432221   


Q ss_pred             CCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCcc
Q 024317          203 LGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLD  239 (269)
Q Consensus       203 ~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~  239 (269)
                                 .......+++.++|...++- .++.+.
T Consensus       881 -----------h~~~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          881 -----------HLSWVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             -----------CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -----------CccceEEEEECCCCCEEEEEeCCCeEE
Confidence                       11346678888888544443 444443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.21  E-value=0.17  Score=42.70  Aligned_cols=110  Identities=10%  Similarity=-0.018  Sum_probs=67.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc----EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV----VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~----~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVa  120 (269)
                      ....+++++ ++.++++-...+.|+.+++.   .+.    .....+.              -.....++++++++ ++++
T Consensus        13 ~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~---~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~l~~   74 (342)
T 1yfq_A           13 YISDIKIIP-SKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRY--------------KHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEEEE---TTTTEEEEEEEEEC--------------SSCEEEEEEEESSSEEEEE
T ss_pred             cEEEEEEcC-CCCEEEEEcCCCeEEEEEeC---CCCccccceeeeec--------------CCceEEEEECCCCCcEEEE
Confidence            457788876 44544444556788888763   222    3333221              12457899998998 5555


Q ss_pred             eCCCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          121 DKSNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       121 D~~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      =...+.|+.++. ...  ..+.+..              .-.....|++++ +..|+.+. .++.|+.++..
T Consensus        75 ~~~dg~i~~wd~~~~~~~~~~~~~~--------------~~~~v~~l~~~~-~~~l~s~~-~d~~i~iwd~~  130 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPSFQALTNNE--------------ANLGICRICKYG-DDKLIAAS-WDGLIEVIDPR  130 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEECBSCC--------------CCSCEEEEEEET-TTEEEEEE-TTSEEEEECHH
T ss_pred             EcCCCeEEEEEeccCCceEeccccC--------------CCCceEEEEeCC-CCEEEEEc-CCCeEEEEccc
Confidence            556788999987 554  3332200              012457899998 45555554 46789888765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.20  E-value=0.058  Score=46.65  Aligned_cols=86  Identities=7%  Similarity=-0.088  Sum_probs=44.0

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCcc--ccccccCceEEEEeCCCCEEEEEECCC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPA--QNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~--~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ....+++++++.++++-...+.|+.++....  ..-......+.....+..  ....-.....++++|+ +.++++-..+
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d  226 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS-GNALAYAGHD  226 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT-SSCEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC-CCEEEEEeCC
Confidence            4578999999987776666778888874210  000000000000000000  0001133578999998 5544444456


Q ss_pred             CeEEEEECCCC
Q 024317          181 QLIRQINLKPE  191 (269)
Q Consensus       181 ~~I~~~~~~~~  191 (269)
                      +.|+.++....
T Consensus       227 ~~i~iwd~~~~  237 (377)
T 3dwl_C          227 SSVTIAYPSAP  237 (377)
T ss_dssp             TEEC-CEECST
T ss_pred             CcEEEEECCCC
Confidence            78988887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.19  E-value=0.17  Score=47.51  Aligned_cols=111  Identities=6%  Similarity=0.033  Sum_probs=62.6

Q ss_pred             cCCCe-EEEEeCCCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC-------
Q 024317           54 PGSSD-LIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS-------  123 (269)
Q Consensus        54 ~~~g~-lyV~D~~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~-------  123 (269)
                      |++.. |+++.....+|+.+++. .+. +....+.....         ...-....+++++++|+ |+++...       
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~-~~g~~~~~~l~~~~~---------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPD-APGGAVPRPLTPVSA---------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTT-STTCCCCEECSCCCC---------STTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             cCCCeEEEEEECCCCeEEEEcCC-CCCCCCCEeccCCcc---------CCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            55667 77776667788888531 001 44443322100         00012346789999998 5554421       


Q ss_pred             --CCEEEEEeCCc------c--eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-------CCeEEE
Q 024317          124 --NHVIRKITNLG------V--TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-------NQLIRQ  185 (269)
Q Consensus       124 --n~~I~~~~~~g------~--~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-------n~~I~~  185 (269)
                        ..+|++++.++      .  ..+. ..                -.....++++|++..|+++...       ...|+.
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAVRELSDDA----------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGSEESSCSC----------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred             CceeEEEEEECCCCccccCCceeEEEecC----------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence              25788888765      3  3332 11                0123457789986677665532       257999


Q ss_pred             EECCC
Q 024317          186 INLKP  190 (269)
Q Consensus       186 ~~~~~  190 (269)
                      ++.++
T Consensus       222 ~d~~~  226 (662)
T 3azo_A          222 ARVTE  226 (662)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            98873

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=1.7  Score=38.65  Aligned_cols=126  Identities=10%  Similarity=-0.012  Sum_probs=69.9

Q ss_pred             CcceEEEecC--CCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           46 NPHSVIDRPG--SSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        46 ~P~giav~~~--~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....++++|.  .+.++++-...+.|+.+|+.   ++. +..+..             ..-.....+++. +|.++++-.
T Consensus       197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~---~~~~~~~~~~-------------~h~~~v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYP---QCFIVDKWLF-------------GHKHFVSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             CEEEEEEEECTTSCEEEEEEETTSCEEEEEES---CTTCEEEECC-------------CCSSCEEEEEEC-STTEEEEEE
T ss_pred             ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC---CCceeeeeec-------------CCCCceEEEEEC-CCCEEEEEe
Confidence            3456777763  15555555556677777752   333 222210             112355789998 888777777


Q ss_pred             CCCEEEEEeCC-cc--eEEecCCC-CCCCC----CC-C---ccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          123 SNHVIRKITNL-GV--TTIAGGGS-KKEGR----AD-G---PAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       123 ~n~~I~~~~~~-g~--~~~~g~~~-~~~~~----~~-~---~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                      ..+.|+.++.. +.  ..+..... ...-.    .+ .   ......-....+|++++++..|+++....+.|+.|+.
T Consensus       260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            78899999954 44  33321100 00000    00 0   0000011235789999987788888767788999987

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.09  E-value=1.8  Score=40.48  Aligned_cols=125  Identities=10%  Similarity=0.116  Sum_probs=69.6

Q ss_pred             cceEEEecCCCeEEEEeCC-------CCEEEEEecCCCCCc---cEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           47 PHSVIDRPGSSDLIVLDSS-------RSAFYTLSFPLSEES---VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~-------~~~I~~~dl~~~~~g---~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      ...++++|++..|+++...       ...|+.+|+  +.+|   ....+....             -..+..+++.++|.
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~--~~~g~~~~~~~l~~~~-------------~~~~~~~~~spdg~  254 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV--TEDGRFADTRTLLGGP-------------EEAIAQAEWAPDGS  254 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE--CTTSCEEEEEEEEEET-------------TBCEEEEEECTTSC
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE--CCCCcccccEEeCCCC-------------CceEcceEECCCCe
Confidence            3557788766677666533       257898886  3245   454443210             12456788989999


Q ss_pred             EEEEeCCCC--EEEEEeCC-cc-eEEecCCCCCCCCCCCccccccc-cCceEEEEeCCCCEEEE-EECCCCeEEEEECCC
Q 024317          117 IYVADKSNH--VIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASF-SNDFELTFVPHICALLI-SDHGNQLIRQINLKP  190 (269)
Q Consensus       117 lyVaD~~n~--~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l-~~P~gia~~~~~g~LyV-aD~~n~~I~~~~~~~  190 (269)
                      +|++-...+  +|++++.+ +. ..+... .....       ...+ .....++++++ +.+++ +..+..+|+.++.++
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~-------~p~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRR-EEEFA-------GPLWTPGMRWFAPLAN-GLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCC-SSBSS-------CCCCSTTCCSEEECTT-SCEEEEEBSSSCEEEEEETTT
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccc-ccccc-------CccccccCceEeEeCC-CEEEEEEEcCccEEEEEECCC
Confidence            776654444  88999864 44 333221 11100       0001 01346888776 44544 433445678888876


Q ss_pred             CeEEE
Q 024317          191 EDCSK  195 (269)
Q Consensus       191 ~~~~~  195 (269)
                      +....
T Consensus       326 ~~~~~  330 (662)
T 3azo_A          326 GELVD  330 (662)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            65443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.05  E-value=0.18  Score=43.41  Aligned_cols=109  Identities=14%  Similarity=0.010  Sum_probs=60.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc----EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV----VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~----~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...+++++ +++++++-...+.|+.+|+.   ++.    ...+.+              .-.....+++.++++++++-.
T Consensus        58 v~~~~~s~-~~~~l~s~s~d~~v~vwd~~---~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~  119 (377)
T 3dwl_C           58 VTCVDWAP-KSNRIVTCSQDRNAYVYEKR---PDGTWKQTLVLLR--------------LNRAATFVRWSPNEDKFAVGS  119 (377)
T ss_dssp             EEEEEECT-TTCCEEEEETTSSEEEC---------CCCCEEECCC--------------CSSCEEEEECCTTSSCCEEEE
T ss_pred             EEEEEEeC-CCCEEEEEeCCCeEEEEEcC---CCCceeeeeEecc--------------cCCceEEEEECCCCCEEEEEe
Confidence            46788875 45555555556778888652   222    222111              112446788888888555555


Q ss_pred             CCCEEEEEeCCcc------eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          123 SNHVIRKITNLGV------TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       123 ~n~~I~~~~~~g~------~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      ..+.|+.++.+..      ..+.+.               .-.....|+++|+ +.++++-...+.|+.++..
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          120 GARVISVCYFEQENDWWVSKHLKRP---------------LRSTILSLDWHPN-NVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             SSSCEEECCC-----CCCCEEECSS---------------CCSCEEEEEECTT-SSEEEEEESSSCEEEEEEC
T ss_pred             cCCeEEEEEECCcccceeeeEeecc---------------cCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEE
Confidence            5677887775432      222210               0234578999998 5555554456788888865

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=94.94  E-value=1  Score=38.72  Aligned_cols=140  Identities=12%  Similarity=-0.000  Sum_probs=72.7

Q ss_pred             CcceEEEecCCCeEEEEeCCC---CEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           46 NPHSVIDRPGSSDLIVLDSSR---SAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~---~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      ....+++++ ++.++++-...   +.|..+|+   .+++ +..+.+...+... -......-.....+++++++.++++-
T Consensus       235 ~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          235 SIRSVKFSP-QGSLLAIAHDSNSFGCITLYET---EFGERIGSLSVPTHSSQA-SLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CEEEEEECS-STTEEEEEEEETTEEEEEEEET---TTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEECC-CCCEEEEEecCCCCceEEEEEC---CCCcccceeccCcccccc-cccccccCCcEEEEEECCCCCEEEEE
Confidence            457888876 45555554445   78999985   3444 3333221000000 00000012345789999999977777


Q ss_pred             CCCCEEEEEeCC-cc--eEEecCCCC-CC--CCCCCccc--cccccCceEEEEeCCCC---------EEEEEECCCCeEE
Q 024317          122 KSNHVIRKITNL-GV--TTIAGGGSK-KE--GRADGPAQ--NASFSNDFELTFVPHIC---------ALLISDHGNQLIR  184 (269)
Q Consensus       122 ~~n~~I~~~~~~-g~--~~~~g~~~~-~~--~~~~~~~~--~~~l~~P~gia~~~~~g---------~LyVaD~~n~~I~  184 (269)
                      ..++.|+.++.. +.  ..+...... ..  ....+...  ...-...+.+++++++.         .++++-..++.|+
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            778899999964 43  333310000 00  00000000  00013467899999831         5666655678898


Q ss_pred             EEECCC
Q 024317          185 QINLKP  190 (269)
Q Consensus       185 ~~~~~~  190 (269)
                      .|+.++
T Consensus       390 iw~~~~  395 (397)
T 1sq9_A          390 WFREAG  395 (397)
T ss_dssp             EEEEEC
T ss_pred             EEEcCC
Confidence            887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=94.76  E-value=1.9  Score=37.60  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=75.4

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-----EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-----VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-----~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      ...++++|.+.+++++-...+.|..+|+.   +++     +..+.+...+.  ..............++++++|.++++-
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMR---ASALCDRHSKLFEEPEDPS--NRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETT---TCSSSCTTCEEECCC-------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECc---CCccccceeeEeccCCCcc--ccccccccCceEEEEEECCCCCEEEEe
Confidence            56788876443677776677889999863   222     23332211000  000000111245789999999966665


Q ss_pred             CCCCEEEEEeCC--cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          122 KSNHVIRKITNL--GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       122 ~~n~~I~~~~~~--g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      .. +.|+.++..  +.  ..+.+......... .............++++++ +..+++-..++.|+.++........
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLC-SLYENDCIFDKFECCWNGS-DSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHH-HHHHTSGGGCCCCEEECTT-SSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             eC-CeEEEEeCCCCccccceeecccccccccc-ccccccccccceEEEECCC-CCEEEEeccCCEEEEEEcCCCccee
Confidence            55 899999864  33  34433211000000 0000001112335889998 5555666678899999988765543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.75  E-value=1.5  Score=41.51  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=64.8

Q ss_pred             cceEEEecCCCeEEEEeC----CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           47 PHSVIDRPGSSDLIVLDS----SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~----~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ...+++ +++..|+++..    ....|+.+|+   .+|+...+......+         .......+++.++|.++++-.
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~---~~g~~~~~~~~~~~~---------~~~~~~~~~~spdg~~~~~~~  355 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL---ASNQQRVLAHETSPT---------WVPLHNSLRFLDDGSILWSSE  355 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEET---TTCCEEEEEEEECSS---------CCCCCSCCEECTTSCEEEEEC
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEEC---CCCceEEEEEcCCCC---------cCCcCCceEECCCCeEEEEec
Confidence            356777 76666766543    2456888874   455555443221100         111234678889998666543


Q ss_pred             C--CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEE-EEeCCCCEEEEEECCC----CeEEEEECCCC
Q 024317          123 S--NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFEL-TFVPHICALLISDHGN----QLIRQINLKPE  191 (269)
Q Consensus       123 ~--n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gi-a~~~~~g~LyVaD~~n----~~I~~~~~~~~  191 (269)
                      .  ..+|+.++.++. ..+...                -.....+ ++++++..||++-...    .+|+.++.++.
T Consensus       356 ~~g~~~l~~~~~~~~~~~l~~~----------------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          356 RTGFQHLYRIDSKGKAAALTHG----------------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             TTSSCEEEEECSSSCEEESCCS----------------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             CCCccEEEEEcCCCCeeeeeec----------------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            3  347888886664 222211                0112345 5899866787765543    35777776665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.65  E-value=1.7  Score=37.55  Aligned_cols=132  Identities=15%  Similarity=0.181  Sum_probs=74.2

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-Cc
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN-LG  134 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g  134 (269)
                      ++.+|+... ++.++.+|.   .+|++.....               +..+.+++++ ++.||+++. ++.+..+|. +|
T Consensus       239 ~~~v~~~~~-~g~l~~~d~---~tG~~~w~~~---------------~~~~~~~~~~-~~~l~~~~~-~g~l~~~d~~tG  297 (376)
T 3q7m_A          239 NGVVFALAY-NGNLTALDL---RSGQIMWKRE---------------LGSVNDFIVD-GNRIYLVDQ-NDRVMALTIDGG  297 (376)
T ss_dssp             TTEEEEECT-TSCEEEEET---TTCCEEEEEC---------------CCCEEEEEEE-TTEEEEEET-TCCEEEEETTTC
T ss_pred             CCEEEEEec-CcEEEEEEC---CCCcEEeecc---------------CCCCCCceEE-CCEEEEEcC-CCeEEEEECCCC
Confidence            688888764 567888873   4676554321               1234456664 788999986 568999996 45


Q ss_pred             ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE-EEecccCccCCCcccceeee
Q 024317          135 VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC-SKSSQSGSALGAVSVWVLVS  213 (269)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~~  213 (269)
                      +..+.-.....          ..+..   .++.  ++.||+.+. ++.|+.++...+.. ......+   +.        
T Consensus       298 ~~~w~~~~~~~----------~~~~~---~~~~--~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~---~~--------  350 (376)
T 3q7m_A          298 VTLWTQSDLLH----------RLLTS---PVLY--NGNLVVGDS-EGYLHWINVEDGRFVAQQKVDS---SG--------  350 (376)
T ss_dssp             CEEEEECTTTT----------SCCCC---CEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCT---TC--------
T ss_pred             cEEEeecccCC----------CcccC---CEEE--CCEEEEEeC-CCeEEEEECCCCcEEEEEecCC---Cc--------
Confidence            53332211000          01222   2333  278999876 46799998665443 2222110   00        


Q ss_pred             eccceeeEEEecCCcEEEEcCCCCcc
Q 024317          214 VLSCLVSLVIGFVARPYIIRHTGRLD  239 (269)
Q Consensus       214 ~l~~p~gia~d~~g~lyVad~~g~~~  239 (269)
                      ....|   ++ .+++|||...+|.+.
T Consensus       351 ~~~~~---~~-~~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          351 FQTEP---VA-ADGKLLIQAKDGTVY  372 (376)
T ss_dssp             BCSCC---EE-ETTEEEEEBTTSCEE
T ss_pred             ceeCC---EE-ECCEEEEEeCCCEEE
Confidence            11112   22 368999998887764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.38  E-value=1.7  Score=36.47  Aligned_cols=116  Identities=10%  Similarity=0.062  Sum_probs=72.3

Q ss_pred             CcceEEEecCC---CeEEEEeCCCCEEEEEecCCCCCccEE-EEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           46 NPHSVIDRPGS---SDLIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~---g~lyV~D~~~~~I~~~dl~~~~~g~~~-~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      ....+++++..   +.++++-...+.|..+|+   .+++.. .+.+.              -.....+++.+ +++++++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~---~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP---ITMQCIKHYVGH--------------GNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECT---TTCCEEEEEESC--------------CSCEEEEEECSSCTTEEEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEc---hhceEeeeecCC--------------CCcEEEEEECCCCCCEEEE
Confidence            35678887642   566666667789999975   344433 33221              12457799988 8887777


Q ss_pred             eCCCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          121 DKSNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       121 D~~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      =...+.|+.++.. +. ........            ..-.....+++++++..|+.+ ..++.|+.++....
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  193 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGVE------------GHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSK  193 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECSTT------------SCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCSH
T ss_pred             EeCCCeEEEEEeecCeEEEEecccc------------cccCceeEEEECCCCCEEEEe-cCCCCEEEEECCCC
Confidence            6667889999864 33 22221100            012346789999984445444 44678999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.29  E-value=2.4  Score=36.68  Aligned_cols=107  Identities=10%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-c
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-G  134 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-g  134 (269)
                      +++++++-...+.|..+|+   ..++.....             ...-.....++++++++++++=...+.|+.++.. +
T Consensus       108 ~~~~l~~~~~dg~i~iwd~---~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDS---NFNLQREID-------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             SSCEEEEEETTSCEEEECT---TSCEEEEET-------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEECCCCEEEEeC---CCcceeeec-------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4555555455566777753   233333321             1122345789999999877766668899999954 4


Q ss_pred             c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          135 V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       135 ~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      .  ..+.+.                -.....+++++++..|+ +-...+.|+.++........
T Consensus       172 ~~~~~~~~h----------------~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          172 SNPRTLIGH----------------RATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             CCCEEEECC----------------SSCEEEEEEETTTTEEE-EEETTSCEEEEETTTTEEEE
T ss_pred             cCceEEcCC----------------CCcEEEEEEcCCCCEEE-EEcCCCcEEEeECCCCceeE
Confidence            3  444332                13457899999844454 44456789999987665443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.17  E-value=2.3  Score=36.11  Aligned_cols=111  Identities=10%  Similarity=-0.018  Sum_probs=62.3

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCC----------C
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG----------N  116 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G----------~  116 (269)
                      ...++++| ++..+++-...+.|+.+|+.    +.........          ...-.....+++.+++          .
T Consensus       121 v~~v~~sp-~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~  185 (343)
T 2xzm_R          121 VYSVAFSP-DNRQILSAGAEREIKLWNIL----GECKFSSAEK----------ENHSDWVSCVRYSPIMKSANKVQPFAP  185 (343)
T ss_dssp             EEEEEECS-STTEEEEEETTSCEEEEESS----SCEEEECCTT----------TSCSSCEEEEEECCCCCSCSCCCSSCC
T ss_pred             EEEEEECC-CCCEEEEEcCCCEEEEEecc----CCceeeeecc----------cCCCceeeeeeeccccccccccCCCCC
Confidence            46678865 45444554456777777642    2211111000          0011122445555544          5


Q ss_pred             EEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          117 IYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       117 lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      ++++-...+.|+.++..+.  ..+.+.                -.....++++|+ +..+++-...+.|+.++..
T Consensus       186 ~l~s~~~d~~i~iwd~~~~~~~~~~~h----------------~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          186 YFASVGWDGRLKVWNTNFQIRYTFKAH----------------ESNVNHLSISPN-GKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEEEETTSEEEEEETTTEEEEEEECC----------------SSCEEEEEECTT-SSEEEEEETTCEEEEEESS
T ss_pred             EEEEEcCCCEEEEEcCCCceeEEEcCc----------------cccceEEEECCC-CCEEEEEcCCCeEEEEECC
Confidence            6666666788998886655  333222                123578999998 5555555567889999873

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=94.04  E-value=0.42  Score=41.23  Aligned_cols=79  Identities=11%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             eEEEcCCCC-E-EEEeCCCC---EEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE---
Q 024317          108 SFAVDMKGN-I-YVADKSNH---VIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD---  177 (269)
Q Consensus       108 giavd~~G~-l-yVaD~~n~---~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD---  177 (269)
                      ..++.++|. | |+++....   .|++++.++.  ..+......          ......|.+++++|++..|+++-   
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC----------SHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE----------EEEEECTTSSEEEEEECCC-------
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc----------eeeeecCCCCeEccCCCcceeEeeec
Confidence            467888987 5 55554222   4889986543  333221100          00112255567788755666542   


Q ss_pred             -----CCCCeEEEEECCCCeEEEe
Q 024317          178 -----HGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       178 -----~~n~~I~~~~~~~~~~~~~  196 (269)
                           .++..|++++.+++.....
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l  335 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQHRV  335 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEEEE
T ss_pred             cccccCCCCEEEEEeccCCceEEe
Confidence                 4566899999887765443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.98  E-value=1.3  Score=37.43  Aligned_cols=117  Identities=12%  Similarity=0.048  Sum_probs=64.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC--CCEEEEeCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK--GNIYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~--G~lyVaD~~  123 (269)
                      .-..+++++ ++.++++-...+.|..+++. ..+++.......             .-.....+++.++  ++++++=..
T Consensus        13 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A           13 LIHDAVLDY-YGKRLATCSSDKTIKIFEVE-GETHKLIDTLTG-------------HEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEEE-TTEEEEEEEECC-------------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cEEEEEEcC-CCCEEEEEECCCcEEEEecC-CCcceeeeEecC-------------CCCcEEEEEeCCCCCCCEEEEecc
Confidence            457788875 55555555556778888752 123332222110             1123356777655  776665555


Q ss_pred             CCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCC--CCEEEEEECCCCeEEEEECCCC
Q 024317          124 NHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH--ICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       124 n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~--~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      ++.|+.++.. +. ..+.-...             .-.....++++++  +..|+++. .++.|+.++....
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~  135 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAV-------------HSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKEN  135 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECC-------------CSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCTT
T ss_pred             CCEEEEEEcCCCceeEeeeecC-------------CCcceEEEEeCCCCCCCEEEEec-CCCcEEEEecCCC
Confidence            6777777743 22 12211100             0134578888886  44455554 4678988887664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=93.88  E-value=1.5  Score=36.81  Aligned_cols=119  Identities=6%  Similarity=0.014  Sum_probs=60.8

Q ss_pred             cceEEEecCC--CeEEEEeCCCCEEEEEecCCCCCc-cEEEEEcCCcccCCCCCcccccCCCCceE------EEcCCCCE
Q 024317           47 PHSVIDRPGS--SDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSF------AVDMKGNI  117 (269)
Q Consensus        47 P~giav~~~~--g~lyV~D~~~~~I~~~dl~~~~~g-~~~~~~g~g~~g~~dg~~~~~~~~~P~gi------avd~~G~l  117 (269)
                      ...+++.+..  +.++++-...+.|..+|+.  ... .+..+.+.              -.....+      ++++++++
T Consensus        68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~s~~~~~  131 (357)
T 3i2n_A           68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLE--APEMPVYSVKGH--------------KEIINAIDGIGGLGIGEGAPE  131 (357)
T ss_dssp             EEEEECTTCCTTTCCEEEEETTSCEEEECTT--SCSSCSEEECCC--------------SSCEEEEEEESGGGCC-CCCE
T ss_pred             EEEEEEcCCCCCCceEEEecCCCeEEEEeCC--CCCccEEEEEec--------------ccceEEEeeccccccCCCccE
Confidence            3567776542  4555555556777777652  111 23333211              0112233      44677876


Q ss_pred             EEEeCCCCEEEEEeCCcc----eEEecCCCCCCCCCCCccccccccCceEEE----EeCCCCEEEEEECCCCeEEEEECC
Q 024317          118 YVADKSNHVIRKITNLGV----TTIAGGGSKKEGRADGPAQNASFSNDFELT----FVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       118 yVaD~~n~~I~~~~~~g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia----~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      +++-...+.|+.++....    ..+.......            -.....++    ++++ +.++++-..++.|+.++..
T Consensus       132 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~  198 (357)
T 3i2n_A          132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN------------KRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLR  198 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEECCCTTSC------------CCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETT
T ss_pred             EEEEeCCCeEEEEeCCCCCCcceeccccCCCC------------CCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECc
Confidence            666666778888885431    3332211000            11234455    5566 5555555556789999988


Q ss_pred             CCeEE
Q 024317          190 PEDCS  194 (269)
Q Consensus       190 ~~~~~  194 (269)
                      .....
T Consensus       199 ~~~~~  203 (357)
T 3i2n_A          199 NMALR  203 (357)
T ss_dssp             TTEEE
T ss_pred             cCcee
Confidence            76653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.88  E-value=1.7  Score=43.50  Aligned_cols=100  Identities=13%  Similarity=0.031  Sum_probs=60.1

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC---
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNL-GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG---  179 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~---  179 (269)
                      .+..++++++|..++.-...+.|+.++.. |. ..+....               -.....++++|++..|.++...   
T Consensus       380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~---------------~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR---------------EAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---------------SSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC---------------CCCccceEECCCCCeEEEEecCccc
Confidence            45789999999844333345689999964 44 4333110               1123578899985566555432   


Q ss_pred             ------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC
Q 024317          180 ------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH  234 (269)
Q Consensus       180 ------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~  234 (269)
                            .+.|+.++..+.........               ......++++++|+ ||++..
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~---------------~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTE---------------NSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCS---------------SSBEEEEEECTTSCEEEEEES
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCC---------------CcccCCceEcCCCCEEEEEec
Confidence                  25799999887654332211               12245578888884 665554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.76  E-value=0.99  Score=43.50  Aligned_cols=66  Identities=8%  Similarity=0.062  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCC--CEEEEEECCCCeEEEEEC
Q 024317          114 KGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI--CALLISDHGNQLIRQINL  188 (269)
Q Consensus       114 ~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~--g~LyVaD~~n~~I~~~~~  188 (269)
                      ++.++++-..++.|+.++.. +.  ......-.            ..-....+++++|+.  +.++++-...+.|+.++.
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~------------~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE------------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC------------CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeec------------CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence            46766666667778888742 21  11111000            001245789999873  556655556778999987


Q ss_pred             CCC
Q 024317          189 KPE  191 (269)
Q Consensus       189 ~~~  191 (269)
                      ...
T Consensus       237 ~~~  239 (753)
T 3jro_A          237 DNE  239 (753)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=93.71  E-value=2.6  Score=35.10  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=69.8

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n  124 (269)
                      .+..+++++  +.++++ ...+.|..+|+.............             ..-..+..+++.+ +++++++-...
T Consensus       152 ~v~~~~~~~--~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          152 KIFTMDTNS--SRLIVG-MNNSQVQWFRLPLCEDDNGTIEES-------------GLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CEEEEEECS--SEEEEE-ESTTEEEEEESSCCTTCCCEEEEC-------------SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             ceEEEEecC--CcEEEE-eCCCeEEEEECCccccccceeeec-------------CCCCceeEEEECCCCCCEEEEEecC
Confidence            456778853  335554 456788888863101111111111             0112457899998 88877777667


Q ss_pred             CEEEEEe--CC-----cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          125 HVIRKIT--NL-----GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       125 ~~I~~~~--~~-----g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      +.|+.++  ..     ..  ..+.+......    +   .........+++++++..|+.+. .++.|+.++........
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK----D---TNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTT----C---CSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEE
T ss_pred             CcEEEEEEcCCCcccccccceeeeccccccc----c---cccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhHhh
Confidence            8888755  33     13  34433211000    0   01123567899999844455444 56789999988665443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=93.57  E-value=3.4  Score=35.96  Aligned_cols=138  Identities=10%  Similarity=0.016  Sum_probs=68.3

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCC------Ccc---EEEEEcCCc-ccCCCCCcccccCCCCceEEEcCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE------ESV---VKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKG  115 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~------~g~---~~~~~g~g~-~g~~dg~~~~~~~~~P~giavd~~G  115 (269)
                      .-..+++++ ++.++++-...+.|..+++....      .+.   ...+.+... ..+..   ....-.....+++.+++
T Consensus        30 ~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           30 IISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK---SLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             SEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG---TEEECCCCCEEEECCCC
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc---cccccCceEEEEEcCCC
Confidence            346788975 66666666667889988863110      011   222322110 00000   00000235678998887


Q ss_pred             --CEEEEeCCCCEEEEEeCCcc-eEEecCCCCC-CC------CCCC-------------------ccccccccCceEEEE
Q 024317          116 --NIYVADKSNHVIRKITNLGV-TTIAGGGSKK-EG------RADG-------------------PAQNASFSNDFELTF  166 (269)
Q Consensus       116 --~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~-~~------~~~~-------------------~~~~~~l~~P~gia~  166 (269)
                        ..+++-...+.|+.++.... .......... .+      ....                   ......-.....+++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              55555566778887774332 1111000000 00      0000                   000011234578999


Q ss_pred             eCCCCEEEEEECCCCeEEEEECC
Q 024317          167 VPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       167 ~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      +++ +.++++- ..+.|+.++.+
T Consensus       186 ~~~-~~~l~s~-~d~~i~iwd~~  206 (447)
T 3dw8_B          186 NSD-YETYLSA-DDLRINLWHLE  206 (447)
T ss_dssp             CTT-SSEEEEE-CSSEEEEEETT
T ss_pred             cCC-CCEEEEe-CCCeEEEEECC
Confidence            998 5555554 58899999988

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.31  E-value=2.9  Score=34.40  Aligned_cols=128  Identities=11%  Similarity=-0.012  Sum_probs=65.4

Q ss_pred             CcceEEEecCC-CeEEEEeCCCCEEEEEecCCCCC-ccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC---CCEEEE
Q 024317           46 NPHSVIDRPGS-SDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK---GNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~-g~lyV~D~~~~~I~~~dl~~~~~-g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~---G~lyVa  120 (269)
                      ....+++.+.. +.++++-...+.|+.+|+..... ..+...........    ...........+++.++   +.++++
T Consensus       112 ~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~l~~  187 (351)
T 3f3f_A          112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI----PPANHLQSDFCLSWCPSRFSPEKLAV  187 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC----CCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred             ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc----ccCCcccceeEEEeccCCCCCcEEEE
Confidence            35678886531 66666666678899998631111 11110000000000    01123345567888775   665555


Q ss_pred             eCCCCEEEEEeC-Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCC---EEEEEECCCCeEEEEECCC
Q 024317          121 DKSNHVIRKITN-LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC---ALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       121 D~~n~~I~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g---~LyVaD~~n~~I~~~~~~~  190 (269)
                      -..++.+...+. .+. ..+.-..             ..-...++++++|+++   .++++-...+.|+.++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKLHVAAKLP-------------GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EETTEEEEEEECTTSCEEEEEECC-------------CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             ecCCCcEEEEccCCCceeeeeecC-------------CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            555555544443 333 2222110             0012357899999731   6666666677888888765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=93.06  E-value=4.2  Score=35.49  Aligned_cols=143  Identities=7%  Similarity=0.013  Sum_probs=75.9

Q ss_pred             CCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc----EEEEEcCCcccCCCCCcccccCC
Q 024317           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV----VKRLAGDGVQGYSDGEPGSARFD  104 (269)
Q Consensus        29 ~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~----~~~~~g~g~~g~~dg~~~~~~~~  104 (269)
                      ++|..+..+..+.  -..-..+++++.++.++++-...+.|..+|+.....+.    ...+               ..-.
T Consensus        50 ~~g~~~~~~~~~h--~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---------------~h~~  112 (437)
T 3gre_A           50 LRGKLIATLMENE--PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---------------DCSS  112 (437)
T ss_dssp             CCCCEEEEECTTT--TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---------------ECSS
T ss_pred             ccceEEeeeccCC--CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---------------cCCC
Confidence            3455566553321  23568899975367777777778889988752100011    1111               1122


Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeC----Ccc--eEEecCCCCCCCCCCCccccccccCceEEE--EeCCCCEEEEE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITN----LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELT--FVPHICALLIS  176 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~----~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia--~~~~~g~LyVa  176 (269)
                      ....|++.++++++++=...+.|+.++.    .+.  ....+.........+    ...-.....++  ..++ +.++++
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~-~~~l~~  187 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN----FGKNEYAVRMRAFVNEE-KSLLVA  187 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG----GSSCCCEEEEEEEECSS-CEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC----cccccCceEEEEEEcCC-CCEEEE
Confidence            4578999998887766666788888764    333  211111000000000    00011233444  3455 566666


Q ss_pred             ECCCCeEEEEECCCCeE
Q 024317          177 DHGNQLIRQINLKPEDC  193 (269)
Q Consensus       177 D~~n~~I~~~~~~~~~~  193 (269)
                      -..++.|+.++......
T Consensus       188 ~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EETTSEEEEEETTTCCE
T ss_pred             EeCCCeEEEEeCCCCee
Confidence            66678899999876544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=92.97  E-value=1.3  Score=39.69  Aligned_cols=123  Identities=8%  Similarity=-0.115  Sum_probs=71.5

Q ss_pred             CcceEEEecCCCeEEE---EeCCCCEEEEEecCCCCCc-----c-EEEEEcCCcccCCCCCcccccCCCCceEEEcCC-C
Q 024317           46 NPHSVIDRPGSSDLIV---LDSSRSAFYTLSFPLSEES-----V-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-G  115 (269)
Q Consensus        46 ~P~giav~~~~g~lyV---~D~~~~~I~~~dl~~~~~g-----~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~-G  115 (269)
                      ....+++++.+..|+|   +-...+.|+.+|+.....+     + +..+.-           ....-....+++++++ +
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~h~~~V~~v~~~p~~~  162 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL-----------LKDAGGMVIDMKWNPTVP  162 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC-----------CCSGGGSEEEEEECSSCT
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec-----------cCCCCCceEEEEECCCCC
Confidence            3678899865555665   5555678888875210000     0 000000           0001224578999886 7


Q ss_pred             CEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          116 NIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       116 ~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      +++++=...+.|+.+|.... ....-.+              .-..+.++++++++..|+++. .++.|+.++.++....
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~--------------~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~  227 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETVKVCATLP--------------STVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKK  227 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSEEEEEEEC--------------GGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEE
T ss_pred             CEEEEEECCCeEEEEEcCCCcceeeccC--------------CCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccc
Confidence            77776666788888885433 2211110              013468999999855666665 5678999998855443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=92.64  E-value=3.7  Score=36.19  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=61.8

Q ss_pred             CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeC-Ccc
Q 024317           57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN-LGV  135 (269)
Q Consensus        57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~-~g~  135 (269)
                      ++++++-...+.|..+|+   .+++.......             .-.....++++++++.+++-...+.|+.++. .+.
T Consensus       280 ~~~l~~~~~d~~i~vwd~---~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDV---AQMKCLYILSG-------------HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             TTEEEEEETTSCEEEEET---TTTEEEEEECC-------------CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEEC---CCCcEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            444445455677888875   34443332211             1224567999999987777777889999996 454


Q ss_pred             --eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          136 --TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       136 --~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                        ..+.+.                -.....+++++  ..|+.+. ..+.|+.++.......
T Consensus       344 ~~~~~~~h----------------~~~v~~~~~~~--~~l~s~s-~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          344 LMYTLQGH----------------TALVGLLRLSD--KFLVSAA-ADGSIRGWDANDYSRK  385 (464)
T ss_dssp             EEEEECCC----------------SSCEEEEEECS--SEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             EEEEEeCC----------------CCcEEEEEEcC--CEEEEEe-CCCcEEEEECCCCcee
Confidence              333222                12345677653  3454444 4678999998765443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=92.64  E-value=3.8  Score=33.97  Aligned_cols=77  Identities=12%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCC--ccEE-EEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEe
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE--SVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~--g~~~-~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD  121 (269)
                      ..-..|+++|.+++++++-+..+.|..+|+.....  +... .+.+              .-.....+++.++|+++++-
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--------------h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--------------HSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--------------CSSCEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--------------CCCCEEEEEECCCCCEEEEE
Confidence            34688999876678888877778888888642111  1111 1111              12345779999999977776


Q ss_pred             CCCCEEEEEeCCcc
Q 024317          122 KSNHVIRKITNLGV  135 (269)
Q Consensus       122 ~~n~~I~~~~~~g~  135 (269)
                      ...+.|+.++....
T Consensus       105 ~~d~~i~~~~~~~~  118 (340)
T 4aow_A          105 SWDGTLRLWDLTTG  118 (340)
T ss_dssp             ETTSEEEEEETTTT
T ss_pred             cccccceEEeeccc
Confidence            66788888886554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=92.63  E-value=7  Score=38.58  Aligned_cols=125  Identities=11%  Similarity=-0.001  Sum_probs=71.2

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      -..|++++  +.+.++-...+.|..+|+   .+++.......              -.....++++++++..++=..++.
T Consensus        61 V~~l~fsp--g~~L~S~s~D~~v~lWd~---~~~~~~~~~~~--------------~~~V~~v~~sp~g~~l~sgs~dg~  121 (902)
T 2oaj_A           61 IKEMRFVK--GIYLVVINAKDTVYVLSL---YSQKVLTTVFV--------------PGKITSIDTDASLDWMLIGLQNGS  121 (902)
T ss_dssp             EEEEEEET--TTEEEEEETTCEEEEEET---TTCSEEEEEEC--------------SSCEEEEECCTTCSEEEEEETTSC
T ss_pred             EEEEEEcC--CCEEEEEECcCeEEEEEC---CCCcEEEEEcC--------------CCCEEEEEECCCCCEEEEEcCCCc
Confidence            36788875  555555556788999986   24443322211              013467889899985555555788


Q ss_pred             EEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          127 IRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       127 I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      |+.+|....  ..+.-........    ...+.......|+++|+++.++++-..++.| .++........
T Consensus       122 V~lwd~~~~~~~~~~i~~~~~~~~----~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~  187 (902)
T 2oaj_A          122 MIVYDIDRDQLSSFKLDNLQKSSF----FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ  187 (902)
T ss_dssp             EEEEETTTTEEEEEEECCHHHHHT----CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE
T ss_pred             EEEEECCCCccccceecccccccc----ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE
Confidence            999986554  2111100000000    0001123467899999644566666667888 99988765443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=92.07  E-value=5  Score=38.49  Aligned_cols=115  Identities=8%  Similarity=0.014  Sum_probs=65.6

Q ss_pred             cceEEEecCC-CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCC--CCEEEEeCC
Q 024317           47 PHSVIDRPGS-SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK--GNIYVADKS  123 (269)
Q Consensus        47 P~giav~~~~-g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~--G~lyVaD~~  123 (269)
                      -.++++++.. ++++++-...+.|+.+|+.   +++.......           ...-.....+++.++  |+++++=..
T Consensus        56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~---~~~~~~~~~~-----------~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCSYDGKVLIWKEE---NGRWSQIAVH-----------AVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEETTSCEEEEEEE---TTEEEEEEEE-----------CCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eEEEEecCCCCCCEEEEEeCCCeEEEEECC---CCcccccccc-----------cCCCCCeEEEEECCCCCCCEEEEEeC
Confidence            4677875431 6666666667788888752   3432111100           001224567889888  887776667


Q ss_pred             CCEEEEEeCCcc-----eEEecCCCCCCCCCCCccccccccCceEEEEeCC------------CCEEEEEECCCCeEEEE
Q 024317          124 NHVIRKITNLGV-----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH------------ICALLISDHGNQLIRQI  186 (269)
Q Consensus       124 n~~I~~~~~~g~-----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~------------~g~LyVaD~~n~~I~~~  186 (269)
                      ++.|+.++....     ..+.+.                -.....++++|.            ++.++++-..++.|+.+
T Consensus       122 dg~I~vwdl~~~~~~~~~~~~~~----------------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iw  185 (753)
T 3jro_A          122 DGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  185 (753)
T ss_dssp             TSEEEEEECCSSSCCCCEEEECC----------------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEE
T ss_pred             CCcEEEEEeecCCCcceeEeecC----------------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEE
Confidence            889999885332     222221                123456777763            24555555556778888


Q ss_pred             ECCCC
Q 024317          187 NLKPE  191 (269)
Q Consensus       187 ~~~~~  191 (269)
                      +....
T Consensus       186 d~~~~  190 (753)
T 3jro_A          186 KYNSD  190 (753)
T ss_dssp             EEETT
T ss_pred             eccCC
Confidence            76543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.03  E-value=4.4  Score=33.28  Aligned_cols=73  Identities=10%  Similarity=-0.059  Sum_probs=44.2

Q ss_pred             CcceEEEecC-CCeEEEEeCCCCEEEEEecCCCCC---c---c-EEEEEcCCcccCCCCCcccccCCCCceEEEcCC--C
Q 024317           46 NPHSVIDRPG-SSDLIVLDSSRSAFYTLSFPLSEE---S---V-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK--G  115 (269)
Q Consensus        46 ~P~giav~~~-~g~lyV~D~~~~~I~~~dl~~~~~---g---~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~--G  115 (269)
                      ....+++.+. ++.++++-...+.|..+|+.....   +   + +..+.+              .-.....+++.++  +
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~  124 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND--------------SKGSLYSVKFAPAHLG  124 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC--------------CSSCEEEEEECCGGGC
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc--------------cCCceeEEEEcCCCCC
Confidence            4577888653 366666666677788887631100   0   1 222211              1224577999888  8


Q ss_pred             CEEEEeCCCCEEEEEeC
Q 024317          116 NIYVADKSNHVIRKITN  132 (269)
Q Consensus       116 ~lyVaD~~n~~I~~~~~  132 (269)
                      +++++=...+.|+.++.
T Consensus       125 ~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDA  141 (351)
T ss_dssp             SEEEEEETTCEEEEEEC
T ss_pred             cEEEEecCCCcEEEecC
Confidence            86666666789999984

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=91.93  E-value=1.6  Score=40.30  Aligned_cols=70  Identities=14%  Similarity=0.060  Sum_probs=36.8

Q ss_pred             eEEEcCCCCEEEEeC--C--CCEEEEEeC--Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCE-EEEEECC
Q 024317          108 SFAVDMKGNIYVADK--S--NHVIRKITN--LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICA-LLISDHG  179 (269)
Q Consensus       108 giavd~~G~lyVaD~--~--n~~I~~~~~--~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~-LyVaD~~  179 (269)
                      .++++++..+|.++.  +  ..+|+.++.  +|. ..+..                 .......++++++.. +|++...
T Consensus        69 ~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-----------------~~~~~~~~~s~dg~~~~~~s~~~  131 (582)
T 3o4h_A           69 DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-----------------VKPMRILSGVDTGEAVVFTGATE  131 (582)
T ss_dssp             EECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-----------------SCSBEEEEEEECSSCEEEEEECS
T ss_pred             cccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccC-----------------CCCceeeeeCCCCCeEEEEecCC
Confidence            455555533777775  2  336777777  665 42211                 112234466666434 5555544


Q ss_pred             CCeEEEEECCCCeEEE
Q 024317          180 NQLIRQINLKPEDCSK  195 (269)
Q Consensus       180 n~~I~~~~~~~~~~~~  195 (269)
                       +.+..++.+++....
T Consensus       132 -~~~~l~d~~~g~~~~  146 (582)
T 3o4h_A          132 -DRVALYALDGGGLRE  146 (582)
T ss_dssp             -SCEEEEEEETTEEEE
T ss_pred             -CCceEEEccCCcEEE
Confidence             445577776665443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=91.70  E-value=7.1  Score=36.63  Aligned_cols=116  Identities=10%  Similarity=0.032  Sum_probs=56.4

Q ss_pred             CcceEEEecCCCeEEEEeCC--------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSS--------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-  116 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~--------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-  116 (269)
                      ....++++|++..|.++...        ...|+.+|+   .+|+...+....           ..-..+..++++++|+ 
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~~~~~l~~~~-----------~~~~~~~~~~~SPdG~~  127 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI---PHGDPQSLDPPE-----------VSNAKLQYAGWGPKGQQ  127 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES---SSCCCEECCCTT-----------CCSCCCSBCCBCSSTTC
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEEC---CCCceEeccCCc-----------cccccccccEECCCCCE
Confidence            36789998755556555321        267778875   344433222110           0011245567777775 


Q ss_pred             EEEEeCCCCEEEEEeCCcc--eEEecCCCCCC---CCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          117 IYVADKSNHVIRKITNLGV--TTIAGGGSKKE---GRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       117 lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~---~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      |.++..  +.|++++.++.  ..+...+....   +..+-...+..+..+.+++++|++..|+++.
T Consensus       128 la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          128 LIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             EEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            444332  46777775443  33322211100   0000000011134557899999966676654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=91.10  E-value=5.1  Score=34.30  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CCceEEEcCCCCEEEEeCCCCE-EEEEeCC-cc--eEEe-cCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317          105 KPKSFAVDMKGNIYVADKSNHV-IRKITNL-GV--TTIA-GGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~-I~~~~~~-g~--~~~~-g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      ....++++++|.++++=...+. |+.+|.. +.  ..+. |..               -...+.++++|+ +.++++-..
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h---------------~~~v~~~~~s~~-~~~l~s~s~  260 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD---------------RADVVDMKWSTD-GSKLAVVSD  260 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC---------------CSCEEEEEECTT-SCEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---------------CCcEEEEEECCC-CCEEEEEEC
Confidence            4578999999998877777776 9999964 44  3333 200               124578999998 666666566


Q ss_pred             CCeEEEEECCCC
Q 024317          180 NQLIRQINLKPE  191 (269)
Q Consensus       180 n~~I~~~~~~~~  191 (269)
                      .+.|+.++....
T Consensus       261 d~~v~iw~~~~~  272 (355)
T 3vu4_A          261 KWTLHVFEIFND  272 (355)
T ss_dssp             TCEEEEEESSCC
T ss_pred             CCEEEEEEccCC
Confidence            788999997654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=90.90  E-value=6.3  Score=34.33  Aligned_cols=108  Identities=10%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             CCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCC-
Q 024317           56 SSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL-  133 (269)
Q Consensus        56 ~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~-  133 (269)
                      ++.++++-...+.|+.+|+   .+++ +..+.+..            .-.....+++++++.++++-...+.|+.+|.. 
T Consensus       181 ~~~~l~~~~~d~~i~iwd~---~~~~~~~~~~~~~------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDI---RTLERLQIIENSP------------RHGAVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETTSEEEEEET---TTCCEEEEEECCG------------GGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEeCCCeEEEEeC---CCCeeeEEEccCC------------CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence            4667777777889999986   3344 33333210            12356789999999977776667889999854 


Q ss_pred             cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCC---CCEEEEEECCCCeEEEEECCCCeE
Q 024317          134 GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH---ICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       134 g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~---~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +.  ..+.-..               -.....+++.+.   ++.++++-..++.|+.++......
T Consensus       246 ~~~~~~~~~~~---------------~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          246 NVLIRSWSFGD---------------HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             TEEEEEEBCTT---------------CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             ccEEEEEecCC---------------CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            33  2221110               012345644432   255667766777899998876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=90.90  E-value=6.6  Score=33.11  Aligned_cols=114  Identities=17%  Similarity=0.087  Sum_probs=66.0

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCC----CccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE----ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~----~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      -..++++| ++.++++-...+.|+.+|.....    ........             ...-..-..++++++|+++++=.
T Consensus        61 v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-------------~~h~~~V~~v~~sp~g~~las~s  126 (330)
T 2hes_X           61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-------------EGHENEVKGVAWSNDGYYLATCS  126 (330)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEE-------------C----CEEEEEECTTSCEEEEEE
T ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-------------cCCCCcEEEEEECCCCCEEEEEe
Confidence            46788875 56666666666778888652100    11111111             01112346799999999777766


Q ss_pred             CCCEEEEEeCC--cc--e---EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          123 SNHVIRKITNL--GV--T---TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       123 ~n~~I~~~~~~--g~--~---~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      ..+.|+.++..  +.  .   .+.+.                -.....|+++|+ +.++++-...+.|+.++....
T Consensus       127 ~D~~v~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          127 RDKSVWIWETDESGEEYECISVLQEH----------------SQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             TTSCEEEEECCTTCCCCEEEEEECCC----------------SSCEEEEEECSS-SSEEEEEETTSCEEEEEEETT
T ss_pred             CCCEEEEEeccCCCCCeEEEEEeccC----------------CCceEEEEECCC-CCEEEEEcCCCeEEEEECCCC
Confidence            67888888852  21  1   12111                123578999998 556666556678888876543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=90.64  E-value=5.6  Score=34.76  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=62.9

Q ss_pred             ceEEEecCCCeEEEEe--CCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEE-Ee-CC
Q 024317           48 HSVIDRPGSSDLIVLD--SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV-AD-KS  123 (269)
Q Consensus        48 ~giav~~~~g~lyV~D--~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyV-aD-~~  123 (269)
                      ..+++.+.+.+++++-  +..+.|..+|+   .++........              -.....+++.+++..++ +- ..
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~---~t~~~~~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~  342 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNV---CSGACLSAVDA--------------HSQVCSILWSPHYKELISGHGFA  342 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEET---TTTEEEEEEEC--------------SSCEEEEEEETTTTEEEEEECTT
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeC---Cccccceeecc--------------ccceeeeeecCCCCeEEEEEecC
Confidence            3455655555555442  23466777764   34443333211              12446677777777444 43 34


Q ss_pred             CCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          124 NHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       124 n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      .+.|++++. .+.  .++.|.                -....+|+++|+ +..+++-...+.|+.++...
T Consensus       343 d~~I~iwd~~~~~~v~~l~gH----------------~~~V~~l~~spd-g~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          343 QNQLVIWKYPTMAKVAELKGH----------------TSRVLSLTMSPD-GATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TCCEEEEETTTCCEEEEECCC----------------SSCEEEEEECTT-SSCEEEEETTTEEEEECCSC
T ss_pred             CCEEEEEECCCCcEEEEEcCC----------------CCCEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Confidence            678888884 344  444332                124578999998 66666666678888887643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=90.44  E-value=11  Score=37.07  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=71.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .....++++| ++.+.++-...+.|+.++.   ..++.......              -..-..+++.+ |.+.++=...
T Consensus        18 ~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~---~~~~~~~~~~~--------------~~~V~~l~fsp-g~~L~S~s~D   78 (902)
T 2oaj_A           18 SKPIAAAFDF-TQNLLAIATVTGEVHIYGQ---QQVEVVIKLED--------------RSAIKEMRFVK-GIYLVVINAK   78 (902)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTSEEEEECS---TTCEEEEECSS--------------CCCEEEEEEET-TTEEEEEETT
T ss_pred             CCcEEEEECC-CCCEEEEEeCCCEEEEEeC---CCcEEEEEcCC--------------CCCEEEEEEcC-CCEEEEEECc
Confidence            3568899986 5666666666788999863   23333222110              01236788888 7744444457


Q ss_pred             CEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          125 HVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       125 ~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                      +.|+.++... .  ..+..                 -...+.++++|++..|+++.. ++.|+.++.+.....
T Consensus        79 ~~v~lWd~~~~~~~~~~~~-----------------~~~V~~v~~sp~g~~l~sgs~-dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTVFV-----------------PGKITSIDTDASLDWMLIGLQ-NGSMIVYDIDRDQLS  133 (902)
T ss_dssp             CEEEEEETTTCSEEEEEEC-----------------SSCEEEEECCTTCSEEEEEET-TSCEEEEETTTTEEE
T ss_pred             CeEEEEECCCCcEEEEEcC-----------------CCCEEEEEECCCCCEEEEEcC-CCcEEEEECCCCccc
Confidence            8999998643 3  23321                 023578999998666666665 678999998877653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=90.33  E-value=4.8  Score=37.13  Aligned_cols=111  Identities=10%  Similarity=-0.048  Sum_probs=64.7

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceE--EEcCCC-CEEEEeCC
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSF--AVDMKG-NIYVADKS  123 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~gi--avd~~G-~lyVaD~~  123 (269)
                      .++++.+ ++ .+++-+..+.|..+|+.  .... ...+.+.              -..-.+|  ++.++| .++++=..
T Consensus       270 ~sv~~s~-~~-~lasgs~DgtV~lWD~~--~~~~~~~~~~~H--------------~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          270 TTFDFLS-PT-TVVCGFKNGFVAEFDLT--DPEVPSFYDQVH--------------DSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             EEEEESS-SS-EEEEEETTSEEEEEETT--BCSSCSEEEECS--------------SSCEEEEEEECCTTSCCEEEEEET
T ss_pred             EEEEecC-CC-eEEEEeCCCEEEEEECC--CCCCceEEeecc--------------cccEEEEEEEcCCCCCeEEEEecc
Confidence            4567753 33 45555667888888763  1111 1122211              1122456  345677 78888777


Q ss_pred             CCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          124 NHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       124 n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .+.|+.+|.. +.  .++.+...              ......|+++|+ +..+++-...+.|+.++....
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~--------------~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFR--------------GSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECS--------------CCSCCCEEEETT-TTEEEEECSSSEEEEEETTCT
T ss_pred             CCeEEEEECCCCCcccccccccc--------------cCcccceEeCCC-cCeEEEeCCCCcEEEEECccc
Confidence            8899999853 33  34433210              012357999997 556666666778999987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=90.09  E-value=1.7  Score=37.23  Aligned_cols=79  Identities=9%  Similarity=-0.012  Sum_probs=40.0

Q ss_pred             CceEEEcCCCC-EEEEe--------CCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE
Q 024317          106 PKSFAVDMKGN-IYVAD--------KSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL  174 (269)
Q Consensus       106 P~giavd~~G~-lyVaD--------~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly  174 (269)
                      |.++++.++|. |+++-        ..+..|++++.++.  ..+..... .+...    ..........++++|++..|+
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~----~~~~~~~~~~~~~spDg~~l~  366 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT-SWKVF----EGDRQVTHPHPSFTPDDKQIL  366 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC-CCCCB----TTBSSTTCCCCEECTTSSEEE
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC-ccccc----ccccccCCCCccCCCCCCEEE
Confidence            55567777776 44431        45668888887654  44443221 00000    000011245678899866777


Q ss_pred             EEECC--CCeEEEEECC
Q 024317          175 ISDHG--NQLIRQINLK  189 (269)
Q Consensus       175 VaD~~--n~~I~~~~~~  189 (269)
                      ++...  ...|++++..
T Consensus       367 ~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          367 FTSDVHGKPALYLATLP  383 (388)
T ss_dssp             EEECTTSSCEEEEEECC
T ss_pred             EEecCCCceeEEEEECC
Confidence            65543  3356666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=89.99  E-value=3.7  Score=40.99  Aligned_cols=113  Identities=6%  Similarity=-0.022  Sum_probs=66.5

Q ss_pred             CcceEEEe-cCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCC-CCceEEEcCCCC-EEEEeC
Q 024317           46 NPHSVIDR-PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFD-KPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        46 ~P~giav~-~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~-~P~giavd~~G~-lyVaD~  122 (269)
                      .+..++++ |++..|.++.  ...|+.++.   ..+....+...              -. .+..+++. +|. |+++..
T Consensus       297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~---~~~~~~~~~~~--------------~~~~~~~~~~s-dg~~l~~~s~  356 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDV---SGTYVLKVPEP--------------LRIRYVRRGGD-TKVAFIHGTR  356 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE--TTEEEEECT---TSSBEEECSCC--------------SCEEEEEECSS-SEEEEEEEET
T ss_pred             ccceeeecCCCCCEEEEEE--cCEEEEEcC---CCCceEEccCC--------------CcceEEeeeEc-CCCeEEEEEC
Confidence            36788888 7555566665  567888864   34444432111              01 23456666 665 333333


Q ss_pred             CCCEEE-EEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          123 SNHVIR-KITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       123 ~n~~I~-~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                       ..+++ .++.++.  ..+.+.                -..+..++++|++..|+++.. .+.|+.++..++.....
T Consensus       357 -~~~l~~~~d~~~~~~~~l~~~----------------~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          357 -EGDFLGIYDYRTGKAEKFEEN----------------LGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             -TEEEEEEEETTTCCEEECCCC----------------CCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEE
T ss_pred             -CCceEEEEECCCCCceEecCC----------------ccceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEe
Confidence             56788 7886554  333211                134678999998666766665 46899999877654443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=89.94  E-value=1.9  Score=40.62  Aligned_cols=118  Identities=6%  Similarity=-0.091  Sum_probs=64.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC-C
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-S  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~-~  123 (269)
                      .+..+++++ +|.++.+ ...+.|+.+|.   .+|+.........          ..-.....++++++|+ |.++.. .
T Consensus        18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~---~~g~~~~~~~~~~----------~~~~~v~~~~~SpDg~~l~~~~~~~   82 (723)
T 1xfd_A           18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNV---ETNTSTVLIEGKK----------IESLRAIRYEISPDREYALFSYNVE   82 (723)
T ss_dssp             CCCCCCBSS-SSCBCCC-CSSSCEEEBCG---GGCCCEEEECTTT----------TTTTTCSEEEECTTSSEEEEEESCC
T ss_pred             cccccEEcC-CCcEEEE-eCCCCEEEEEC---CCCcEEEEecccc----------ccccccceEEECCCCCEEEEEecCc
Confidence            477788876 5554444 44567888875   3454444432110          0001367899999999 444422 1


Q ss_pred             -------CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          124 -------NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       124 -------n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                             ...|++++.++.  ..+.....             .-..+..++++|++..|.++..  +.|+.++..++..
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------------~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~  146 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGDPQSLDPPEV-------------SNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQA  146 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCCCEECCCTTC-------------CSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCC
T ss_pred             cceeecceeeEEEEECCCCceEeccCCcc-------------ccccccccEECCCCCEEEEEEC--CeEEEEECCCCce
Confidence                   257788886543  23322110             0112456777887555655443  5688887766543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.68  E-value=14  Score=34.84  Aligned_cols=131  Identities=4%  Similarity=-0.031  Sum_probs=73.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC-----CccEEE--EEcCCc---ccCCCCCc---cc-ccCCCCceEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-----ESVVKR--LAGDGV---QGYSDGEP---GS-ARFDKPKSFA  110 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~-----~g~~~~--~~g~g~---~g~~dg~~---~~-~~~~~P~gia  110 (269)
                      ..-..|+++| +|.++++-+....|.  |.....     .+.+..  +...|.   -...++..   .. ..-....+++
T Consensus        16 ~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           16 DWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             ccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            4578899974 889998877777775  321100     011111  111111   00111111   00 1123457899


Q ss_pred             EcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          111 VDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       111 vd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      +.++|....+=..++.|+.++.++. ..+. ....-         .  =..-..++++|++..|+++.. .+.|+.++..
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~---------~--~~sv~svafSPDG~~LAsgs~-DGtVkIWd~~  159 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNL---------S--SRTYHCFEWNPIESSIVVGNE-DGELQFFSIR  159 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCS---------T--TTCEEEEEECSSSSCEEEEET-TSEEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCcc---------c--cccEEEEEEcCCCCEEEEEcC-CCEEEEEECC
Confidence            9999996666666788999986664 3322 11000         0  013468999999555665554 6889999988


Q ss_pred             CC
Q 024317          190 PE  191 (269)
Q Consensus       190 ~~  191 (269)
                      ++
T Consensus       160 ~~  161 (588)
T 2j04_A          160 KN  161 (588)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.59  E-value=7.9  Score=31.98  Aligned_cols=31  Identities=6%  Similarity=0.014  Sum_probs=22.8

Q ss_pred             CceEEEEeCCC--CEEEEEECCCCeEEEEECCC
Q 024317          160 NDFELTFVPHI--CALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       160 ~P~gia~~~~~--g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ...+|+++|+.  +.++++-...+.|+.++.+.
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            45789999873  46677766678898888664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.47  E-value=8.8  Score=32.35  Aligned_cols=72  Identities=10%  Similarity=-0.053  Sum_probs=48.6

Q ss_pred             CceEEEcC--CCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          106 PKSFAVDM--KGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       106 P~giavd~--~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ...+++++  +++++++=...+.|+.++....  ........              -.....++++|+ +.++++-..++
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------------~~~i~~~~~~pd-g~~lasg~~dg  192 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------------DVEYSSGVLHKD-SLLLALYSPDG  192 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------------SCCCCEEEECTT-SCEEEEECTTS
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------------CCceEEEEECCC-CCEEEEEcCCC
Confidence            46788888  8888887667788999986443  22221110              123578999998 77777766678


Q ss_pred             eEEEEECCCCe
Q 024317          182 LIRQINLKPED  192 (269)
Q Consensus       182 ~I~~~~~~~~~  192 (269)
                      .|+.++.....
T Consensus       193 ~i~iwd~~~~~  203 (343)
T 3lrv_A          193 ILDVYNLSSPD  203 (343)
T ss_dssp             CEEEEESSCTT
T ss_pred             EEEEEECCCCC
Confidence            99999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=88.73  E-value=9.6  Score=31.84  Aligned_cols=56  Identities=14%  Similarity=0.029  Sum_probs=32.5

Q ss_pred             CCceEEEcCCCC-EEEEe-C---CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEE
Q 024317          105 KPKSFAVDMKGN-IYVAD-K---SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISD  177 (269)
Q Consensus       105 ~P~giavd~~G~-lyVaD-~---~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD  177 (269)
                      ....+++.++|. |+++. .   +...|++++.++.  ..+....                . ...++++|++..|+++.
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----------------~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----------------N-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----------------E-EEEEEECTTSSEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----------------C-ccceeECCCCCEEEEEE
Confidence            345678888887 44443 2   2345778876543  3333210                1 46778888866676664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=88.44  E-value=5.4  Score=35.60  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=50.1

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ...+|+++|..++++++-...+.|+.+|+.   ++. +....+              .-....+++++++|..+++=..+
T Consensus       151 ~V~~v~~~p~~~~~las~s~Dg~v~iwD~~---~~~~~~~~~~--------------~~~~v~~v~wspdg~~lasgs~d  213 (434)
T 2oit_A          151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVT---ETVKVCATLP--------------STVAVTSVCWSPKGKQLAVGKQN  213 (434)
T ss_dssp             SEEEEEECSSCTTEEEEEETTSCEEEEEES---SSEEEEEEEC--------------GGGCEEEEEECTTSSCEEEEETT
T ss_pred             ceEEEEECCCCCCEEEEEECCCeEEEEEcC---CCcceeeccC--------------CCCceeEEEEcCCCCEEEEEcCC
Confidence            457889987657888877778889999863   332 222221              11256789999999855555567


Q ss_pred             CEEEEEeCCcc
Q 024317          125 HVIRKITNLGV  135 (269)
Q Consensus       125 ~~I~~~~~~g~  135 (269)
                      +.|+.++..+.
T Consensus       214 g~v~iwd~~~~  224 (434)
T 2oit_A          214 GTVVQYLPTLQ  224 (434)
T ss_dssp             SCEEEECTTCC
T ss_pred             CcEEEEccCCc
Confidence            89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.18  E-value=11  Score=31.90  Aligned_cols=82  Identities=11%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             EEEcC-CCCEEEEeC----------------CCCEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCC
Q 024317          109 FAVDM-KGNIYVADK----------------SNHVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH  169 (269)
Q Consensus       109 iavd~-~G~lyVaD~----------------~n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~  169 (269)
                      +++.+ +|.++++..                +...|++++.++ . ..+...... ....+.    .....+..++++++
T Consensus       287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~----~~~~~~~~~~~s~d  361 (396)
T 3c5m_A          287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS-WDVLDG----DRQITHPHPSFTPN  361 (396)
T ss_dssp             EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC-CCCBTT----BSSTTCCCCEECTT
T ss_pred             CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc-cccccc----cccCCCCCceEccC
Confidence            67777 888666532                346899998654 3 444332110 000000    00112345677888


Q ss_pred             CCEEEEEECC--CCeEEEEECCCCeEEE
Q 024317          170 ICALLISDHG--NQLIRQINLKPEDCSK  195 (269)
Q Consensus       170 ~g~LyVaD~~--n~~I~~~~~~~~~~~~  195 (269)
                      +..|+++...  ...|+.++.++.....
T Consensus       362 g~~l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          362 DDGVLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             SSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred             CCeEEEEecCCCCceEEEEEEccccccc
Confidence            6677766543  3367888776655443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=88.08  E-value=13  Score=32.56  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=42.0

Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          110 AVDMKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       110 avd~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      ++.++++++++-...+.|+.+|... .  ..+.+.                -.....+++++++..|+ +-..++.|+.+
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~-sg~~dg~i~vw  337 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH----------------TDRIYSTIYDHERKRCI-SASMDTTIRIW  337 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC----------------SSCEEEEEEETTTTEEE-EEETTSCEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC----------------CCCEEEEEEcCCCCEEE-EEeCCCcEEEE
Confidence            4456677666666677888888543 3  233221                13457889998744444 44456789999


Q ss_pred             ECCCCeEE
Q 024317          187 NLKPEDCS  194 (269)
Q Consensus       187 ~~~~~~~~  194 (269)
                      +.......
T Consensus       338 d~~~~~~~  345 (464)
T 3v7d_B          338 DLENGELM  345 (464)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCcEE
Confidence            98765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=87.92  E-value=18  Score=34.02  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc--------EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV--------VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY  118 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~--------~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~ly  118 (269)
                      -..++++|++..|+++ ...+.|..+|+.   .+.        +.++-+..          ......-..+++.++|  +
T Consensus       132 v~svafSPDG~~LAsg-s~DGtVkIWd~~---~~~l~~~~~i~l~ti~~~~----------~gh~~~V~sVawSPdg--L  195 (588)
T 2j04_A          132 YHCFEWNPIESSIVVG-NEDGELQFFSIR---KNSENTPEFYFESSIRLSD----------AGSKDWVTHIVWYEDV--L  195 (588)
T ss_dssp             EEEEEECSSSSCEEEE-ETTSEEEEEECC---CCTTTCCCCEEEEEEECSC----------TTCCCCEEEEEEETTE--E
T ss_pred             EEEEEEcCCCCEEEEE-cCCCEEEEEECC---CCccccccceeeeeeeccc----------ccccccEEEEEEcCCc--E
Confidence            4568888744444444 457788888753   232        23332111          0112456789999999  5


Q ss_pred             EEeCCCCEEEEEeCCcc--e----EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Q 024317          119 VADKSNHVIRKITNLGV--T----TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED  192 (269)
Q Consensus       119 VaD~~n~~I~~~~~~g~--~----~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~  192 (269)
                      ++-...+.|+.++.++.  .    ++... .              -....+++++ + ..|.++.  .+.|+.++..+..
T Consensus       196 aass~D~tVrlWd~~~~~~~~~~~tL~~~-h--------------~~~V~svaFs-g-~~LASa~--~~tIkLWd~~~~~  256 (588)
T 2j04_A          196 VAALSNNSVFSMTVSASSHQPVSRMIQNA-S--------------RRKITDLKIV-D-YKVVLTC--PGYVHKIDLKNYS  256 (588)
T ss_dssp             EEEETTCCEEEECCCSSSSCCCEEEEECC-C--------------SSCCCCEEEE-T-TEEEEEC--SSEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEECCCCccccceeeeccc-c--------------cCcEEEEEEE-C-CEEEEEe--CCeEEEEECCCCe
Confidence            55556788998887664  2    12111 0              1245788887 3 5666654  4799999988877


Q ss_pred             EEE
Q 024317          193 CSK  195 (269)
Q Consensus       193 ~~~  195 (269)
                      ...
T Consensus       257 ~~~  259 (588)
T 2j04_A          257 ISS  259 (588)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            633

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=87.92  E-value=15  Score=34.89  Aligned_cols=34  Identities=12%  Similarity=0.024  Sum_probs=23.3

Q ss_pred             EEEecCCCeEEEEeCCC------------------CEEEEEecCCCCCccEEEEE
Q 024317           50 VIDRPGSSDLIVLDSSR------------------SAFYTLSFPLSEESVVKRLA   86 (269)
Q Consensus        50 iav~~~~g~lyV~D~~~------------------~~I~~~dl~~~~~g~~~~~~   86 (269)
                      +++++..+.+|+.....                  ..|+.+|.   .+|++....
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~---~tG~~~W~~  286 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP---DTGKLAWHY  286 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT---TTCCEEEEE
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC---CCCceeeEe
Confidence            68877778888886432                  25888874   578766654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.30  E-value=12  Score=31.38  Aligned_cols=111  Identities=9%  Similarity=0.008  Sum_probs=63.5

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      -..+++++  + ++++-...+.|+.+|+. ....+.......+           ..-..-..+++.++++++++=...+.
T Consensus        17 v~~~~~s~--~-~las~~~D~~i~lw~~~-~~~~~~~~~~~~~-----------~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X           17 IWSFDFSQ--G-ILATGSTDRKIKLVSVK-YDDFTLIDVLDET-----------AHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             EEEEEEET--T-EEEEEESSSCEEEEECS-SSCCEEEEEECTT-----------CCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeccCC--C-EEEEEcCCCEEEEEEec-CCCeEEEEEEecC-----------CccCCEEEEEECCCCCEEEEEeCCCc
Confidence            35677753  2 55555566788888753 1112222222110           01123467999999997777766788


Q ss_pred             EEEEeCCcc----------eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECC
Q 024317          127 IRKITNLGV----------TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLK  189 (269)
Q Consensus       127 I~~~~~~g~----------~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~  189 (269)
                      |+.++....          ..+.+.                -....+++++|+ +.++++-...+.|+.++.+
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h----------------~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGH----------------ENEVKGVAWSND-GYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC--------------------CEEEEEECTT-SCEEEEEETTSCEEEEECC
T ss_pred             EEEEEcccCcCccccceeEEEEcCC----------------CCcEEEEEECCC-CCEEEEEeCCCEEEEEecc
Confidence            888875321          111111                123578999998 5555555557789999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.98  E-value=5.7  Score=33.79  Aligned_cols=75  Identities=9%  Similarity=0.001  Sum_probs=41.4

Q ss_pred             CceEEEcC-CCC-EEE-EeCCC----CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE
Q 024317          106 PKSFAVDM-KGN-IYV-ADKSN----HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS  176 (269)
Q Consensus       106 P~giavd~-~G~-lyV-aD~~n----~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa  176 (269)
                      ...+++.+ +|. |++ ++...    .+|+.++.++.  ..+.. ...             -..+..++++|++..|+++
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-------------~~~~~~~~~spdg~~l~~~  255 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAE-------------GESCTHEFWIPDGSAMAYV  255 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCT-------------TEEEEEEEECTTSSCEEEE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCC-------------CccccceEECCCCCEEEEE
Confidence            35677777 565 444 43222    47888887654  33221 000             1134567889885556554


Q ss_pred             -EC-CCCe--EEEEECCCCeEE
Q 024317          177 -DH-GNQL--IRQINLKPEDCS  194 (269)
Q Consensus       177 -D~-~n~~--I~~~~~~~~~~~  194 (269)
                       .. +...  |++++..++...
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~  277 (396)
T 3c5m_A          256 SYFKGQTDRVIYKANPETLENE  277 (396)
T ss_dssp             EEETTTCCEEEEEECTTTCCEE
T ss_pred             ecCCCCccceEEEEECCCCCeE
Confidence             32 3334  899988765443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=84.29  E-value=16  Score=30.02  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=64.7

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCCEEEEeCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVADKS  123 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~lyVaD~~  123 (269)
                      -..+++++ ++..+++-...+.|+.+|+. ...++ +.++.|.              -..-..+++.+  +|+++++=..
T Consensus        12 V~~~~~s~-~g~~las~s~D~~v~iw~~~-~~~~~~~~~l~gH--------------~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B           12 IHDAVMDY-YGKRMATCSSDKTIKIFEVE-GETHKLIDTLTGH--------------EGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEEBC-SSCBCCCEEECCC--------------SSCEEEEEECCGGGCSEEEEEET
T ss_pred             eEEEEECC-CCCEEEEEeCCCEEEEEecC-CCCcEEEEEEccc--------------cCCeEEEEecCCCcCCEEEEEcC
Confidence            36788864 67777776677888888753 11222 2233221              11234677754  4777777666


Q ss_pred             CCEEEEEeCC-cc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCC-CEEEEEECCCCeEEEEECCCC
Q 024317          124 NHVIRKITNL-GV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI-CALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       124 n~~I~~~~~~-g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~-g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .+.|+.++.. +.    ..+.+.                -...+.++++|+. +.++++-...+.|+.++....
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h----------------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVH----------------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCC----------------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CCEEEEEEcCCCceEEEEEeecC----------------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            7888888853 21    222211                1234678888752 444444445678888887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=84.18  E-value=29  Score=32.90  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=43.2

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC----
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS----  123 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~----  123 (269)
                      .++++  .++.||+... .++|+.+|   ..+|++......+. ....+   ......|   ++ .++.+||....    
T Consensus       122 ~~~a~--~~~~v~v~~~-dg~l~alD---~~tG~~~W~~~~~~-~~~~~---~~~~~~p---~v-~~~~v~v~~~~~~~~  187 (677)
T 1kb0_A          122 RGVAL--WKGKVYVGAW-DGRLIALD---AATGKEVWHQNTFE-GQKGS---LTITGAP---RV-FKGKVIIGNGGAEYG  187 (677)
T ss_dssp             CCCEE--ETTEEEEECT-TSEEEEEE---TTTCCEEEEEETTT-TCCSS---CBCCSCC---EE-ETTEEEECCBCTTTC
T ss_pred             CCceE--ECCEEEEEcC-CCEEEEEE---CCCCCEEeeecCCc-CcCcC---cccccCc---EE-ECCEEEEEecccccC
Confidence            46777  3789999854 57899998   36788766543320 00000   0111122   23 26778887653    


Q ss_pred             -CCEEEEEeC-Ccc
Q 024317          124 -NHVIRKITN-LGV  135 (269)
Q Consensus       124 -n~~I~~~~~-~g~  135 (269)
                       .+.|+.+|. +|+
T Consensus       188 ~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          188 VRGYITAYDAETGE  201 (677)
T ss_dssp             CBCEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCc
Confidence             578999995 566

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=84.04  E-value=12  Score=35.09  Aligned_cols=118  Identities=6%  Similarity=-0.054  Sum_probs=65.4

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC---
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK---  122 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~---  122 (269)
                      +.++++.+ ++.++.+. ..+.|+.+|.   ..|+...+.....         ... .....++++++|+ |.++..   
T Consensus        18 ~~~~~~s~-dg~~~~~~-~d~~i~~~~~---~~g~~~~~~~~~~---------~~~-~~~~~~~~SpDg~~la~~~~~~~   82 (719)
T 1z68_A           18 TFFPNWIS-GQEYLHQS-ADNNIVLYNI---ETGQSYTILSNRT---------MKS-VNASNYGLSPDRQFVYLESDYSK   82 (719)
T ss_dssp             CCCCEESS-SSEEEEEC-TTSCEEEEES---SSCCEEEEECHHH---------HHT-TTCSEEEECTTSSEEEEEEEEEE
T ss_pred             CCccEECC-CCeEEEEc-CCCCEEEEEc---CCCcEEEEEcccc---------ccc-cceeeEEECCCCCeEEEEecCce
Confidence            34667765 45554444 4667888874   4555555442110         000 1246789999998 444432   


Q ss_pred             -----CCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          123 -----SNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       123 -----~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                           ....|++++.++...+.....              -.....++++|++..|.++.  ++.|+.++..++....
T Consensus        83 ~~~~s~~~~i~~~d~~~g~~~~~~~l--------------~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A           83 LWRYSYTATYYIYDLSNGEFVRGNEL--------------PRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCC--------------CSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEE
T ss_pred             eEEeecceEEEEEECCCCccccceec--------------CcccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEE
Confidence                 135788887654322100000              02245688899866666554  4678888887655443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.09  E-value=4.4  Score=38.14  Aligned_cols=83  Identities=13%  Similarity=0.058  Sum_probs=56.7

Q ss_pred             CCCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          104 DKPKSFAVDMKGN-IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       104 ~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ++|+|+-++|+|. +|++.....++.+++-+.. ..+.+.-.   ...+. .+....=..|...+++++ |+.|.+=.-.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~---~~~~~~~ae~e~GlGPlHt~Fd~~-G~aYTtlfid  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA---DPRDVIVGEPELGLGPLHTTFDGR-GNAYTTLFID  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS---CGGGGEEECCBCCSCEEEEEECSS-SEEEEEETTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc---CcccceEeeccCCCcccEEEECCC-CceEeeeeec
Confidence            7899999999999 8888888889998886533 22221100   00000 000011247999999997 8999999988


Q ss_pred             CeEEEEECCC
Q 024317          181 QLIRQINLKP  190 (269)
Q Consensus       181 ~~I~~~~~~~  190 (269)
                      ..|.+|+.+.
T Consensus       399 SqvvkWni~~  408 (638)
T 3sbq_A          399 SQVVKWNMEE  408 (638)
T ss_dssp             TEEEEEEHHH
T ss_pred             ceEEEEeccH
Confidence            9999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=82.99  E-value=21  Score=30.34  Aligned_cols=61  Identities=7%  Similarity=-0.032  Sum_probs=36.5

Q ss_pred             CceEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          160 NDFELTFVPHICALLISDHGNQL-IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       160 ~P~gia~~~~~g~LyVaD~~n~~-I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      ..+.|+++|+ +.++++-...+. |+.++............+ .           .-.....++++++|+..++-
T Consensus       197 ~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g-~-----------h~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          197 PIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVLVREFRRG-L-----------DRADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             CEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCEEEEEECT-T-----------CCSCEEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-C-----------CCCcEEEEEECCCCCEEEEE
Confidence            3578999998 666666666676 999998765443322110 0           01234567777777554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=82.94  E-value=13  Score=31.05  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc---EEEEEcCCcccCCCCCcccccCCCCceEEEcC--CCCEEEEe
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVAD  121 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~---~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~--~G~lyVaD  121 (269)
                      -..+++++ +++..++-+..+.|+.+|+.   ++.   +..+.|.              -..-..+++.+  +|+++++=
T Consensus        16 V~~v~~s~-~g~~lasgs~D~~v~lwd~~---~~~~~~~~~l~gH--------------~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A           16 IHDAQMDY-YGTRLATCSSDRSVKIFDVR---NGGQILIADLRGH--------------EGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             EEEEEECG-GGCEEEEEETTTEEEEEEEE---TTEEEEEEEEECC--------------SSCEEEEEECCGGGSSCEEEE
T ss_pred             EEEeeEcC-CCCEEEEEeCCCeEEEEEec---CCCcEEEEEEcCC--------------CccEEEEEeCCCCCCCEEEEE
Confidence            36788865 67777776777888888752   332   2223221              11235677753  36766665


Q ss_pred             CCCCEEEEEeCC-cc----eEEecCCCCCCCCCCCccccccccCceEEEEeCCC-CEEEEEECCCCeEEEEECCC
Q 024317          122 KSNHVIRKITNL-GV----TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHI-CALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       122 ~~n~~I~~~~~~-g~----~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~-g~LyVaD~~n~~I~~~~~~~  190 (269)
                      ...+.|+.++.. +.    ..+.+.                -...+.|+++|+. +.++++-...+.|+.++...
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h----------------~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGH----------------DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCC----------------SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             ECCCEEEEEECCCCcceEEEEccCC----------------CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            566788888754 32    122221                1235678888762 45566656667787777654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=82.19  E-value=5.4  Score=36.76  Aligned_cols=67  Identities=4%  Similarity=0.015  Sum_probs=47.6

Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      ..+++.+++..+++-...+.|+.++.. +.  .++.+.                -...+.|+++|+ +.++++-...+.|
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH----------------~~~V~sva~Sp~-g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR----------------ETTITAIGVSRL-HPMVLAGSADGSL  421 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC----------------SSCEEEEECCSS-CCBCEEEETTTEE
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC----------------CCceEEEEeCCC-CCeEEEEECCCEE
Confidence            579999999988887777889999843 33  444442                234578999987 6666666667788


Q ss_pred             EEEECCC
Q 024317          184 RQINLKP  190 (269)
Q Consensus       184 ~~~~~~~  190 (269)
                      +.++...
T Consensus       422 ~lwd~~~  428 (524)
T 2j04_B          422 IITNAAR  428 (524)
T ss_dssp             ECCBSCS
T ss_pred             EEEechH
Confidence            8887654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=82.11  E-value=24  Score=30.43  Aligned_cols=171  Identities=11%  Similarity=0.009  Sum_probs=78.6

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCC--cccC-------CCC--CcccccCCCCceEEEc-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDG--VQGY-------SDG--EPGSARFDKPKSFAVD-  112 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g--~~g~-------~dg--~~~~~~~~~P~giavd-  112 (269)
                      ....+++.|.+.+++++-...+.|..+|+.   .++ ........  ....       ...  .........-..+.+. 
T Consensus       188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~---t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~  264 (393)
T 4gq1_A          188 PGISVQFRPSNPNQLIVGERNGNIRIFDWT---LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG  264 (393)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETT---CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred             CcEEEEECCCCCceEEecCCCCEEEEEECC---CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence            457889987666677777778899999863   222 11111110  0000       000  0001112233456665 


Q ss_pred             CCCCEEEEeCCCCEEEEEeCCc-c--eEEecCCCCCC--CCCCCccccccccCceEEEEeCC-CCEEEEEECCCCeEEEE
Q 024317          113 MKGNIYVADKSNHVIRKITNLG-V--TTIAGGGSKKE--GRADGPAQNASFSNDFELTFVPH-ICALLISDHGNQLIRQI  186 (269)
Q Consensus       113 ~~G~lyVaD~~n~~I~~~~~~g-~--~~~~g~~~~~~--~~~~~~~~~~~l~~P~gia~~~~-~g~LyVaD~~n~~I~~~  186 (269)
                      ++|...++-...+.++.++... .  ..+.+......  ................+..+.+. ++.+.++-...+.|+.+
T Consensus       265 ~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw  344 (393)
T 4gq1_A          265 SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI  344 (393)
T ss_dssp             TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence            5888777777788888887432 1  22222110000  00000000011122233334443 24455566667889999


Q ss_pred             ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                      +............              .-.....+++.++|+...+-
T Consensus       345 d~~~~~~~~~~~~--------------~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          345 NTYEKDSNSIPIQ--------------LGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             ETTCTTCCEEEEE--------------CSSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcEEEEecC--------------CCCcEEEEEEcCCCCEEEEE
Confidence            8765432211111              00235679999999665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=80.79  E-value=39  Score=32.05  Aligned_cols=35  Identities=11%  Similarity=-0.034  Sum_probs=23.5

Q ss_pred             eEEEecCCCeEEEEeCCC------------------CEEEEEecCCCCCccEEEEE
Q 024317           49 SVIDRPGSSDLIVLDSSR------------------SAFYTLSFPLSEESVVKRLA   86 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~------------------~~I~~~dl~~~~~g~~~~~~   86 (269)
                      .+++++..+.+|+...+.                  ..|+.+|.   .+|+.....
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~---~TG~~~W~~  291 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA---DTGEYVWHY  291 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET---TTCCEEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc---cCCceeEee
Confidence            467877778888875432                  14888884   577766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=80.19  E-value=26  Score=29.70  Aligned_cols=61  Identities=8%  Similarity=0.102  Sum_probs=39.5

Q ss_pred             CCCCEEEEeCCCCEEEEEeC-CcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC
Q 024317          113 MKGNIYVADKSNHVIRKITN-LGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE  191 (269)
Q Consensus       113 ~~G~lyVaD~~n~~I~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~  191 (269)
                      .++.+|++.. ++.+..++. +|+..+.-.                +..+.+++++  ++.||+++. ++.|+.++...+
T Consensus       238 ~~~~v~~~~~-~g~l~~~d~~tG~~~w~~~----------------~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG  297 (376)
T 3q7m_A          238 VNGVVFALAY-NGNLTALDLRSGQIMWKRE----------------LGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGG  297 (376)
T ss_dssp             ETTEEEEECT-TSCEEEEETTTCCEEEEEC----------------CCCEEEEEEE--TTEEEEEET-TCCEEEEETTTC
T ss_pred             ECCEEEEEec-CcEEEEEECCCCcEEeecc----------------CCCCCCceEE--CCEEEEEcC-CCeEEEEECCCC
Confidence            3678888864 568888886 455333211                2234456655  379999986 467999997655


Q ss_pred             eE
Q 024317          192 DC  193 (269)
Q Consensus       192 ~~  193 (269)
                      ..
T Consensus       298 ~~  299 (376)
T 3q7m_A          298 VT  299 (376)
T ss_dssp             CE
T ss_pred             cE
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	2e-08
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	4e-07

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 96  GEPGSA--RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG-VTTIAGGGSKKEGRADGP 152
           GE G    +F +P   AV+ + +I VAD +NH I+     G      G   K++ +   P
Sbjct: 13  GEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYP 72

Query: 153 AQNASFSNDFELTFVPH 169
            + A   N  ++     
Sbjct: 73  NRVAVVRNSGDIIVTER 89

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG 134
                + P + AVD    +YVAD+ N  + K+T+L 
Sbjct: 219 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.62
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.71
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.53
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.41
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.4
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.33
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.2
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.01
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.57
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.52
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.35
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.87
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.73
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.66
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.58
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.57
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.33
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.27
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.2
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.17
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.71
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.44
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.68
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.65
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.2
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.56
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	93.11
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.05
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	93.02
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.23
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	90.1
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	87.12
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	85.17
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	84.96
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	80.58
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	80.15

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1.2e-20  Score=161.64  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=128.0

Q ss_pred             CccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcc-----------------c----------
Q 024317           40 GHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ-----------------G----------   92 (269)
Q Consensus        40 g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~-----------------g----------   92 (269)
                      +.++|+.|.|||++ .+|+|||+|..|+||+++    +++|++.+..+....                 +          
T Consensus        18 ~~g~f~~P~gvavd-~dg~i~VaD~~n~rI~v~----d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   92 (279)
T d1q7fa_          18 MEGQFTEPSGVAVN-AQNDIIVADTNNHRIQIF----DKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   92 (279)
T ss_dssp             STTCBSCEEEEEEC-TTCCEEEEEGGGTEEEEE----CTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CCCeECCccEEEEc-CCCCEEEEECCCCEEEEE----eCCCCEEEEecccCCCcccccccccccccccccccceeccCCc
Confidence            45579999999996 589999999999999999    467776655542100                 0          


Q ss_pred             -----C-CCCCc----ccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCc
Q 024317           93 -----Y-SDGEP----GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSND  161 (269)
Q Consensus        93 -----~-~dg~~----~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P  161 (269)
                           + .++..    ....+..|.+++++++|++|++|..++++.+++++|. ..-.+..             ..+..|
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~-------------~~~~~~  159 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS-------------KHLEFP  159 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT-------------TTCSSE
T ss_pred             cccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc-------------cccccc
Confidence                 0 01111    1245788999999999999999999999999999998 3333321             237889


Q ss_pred             eEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC
Q 024317          162 FELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH  234 (269)
Q Consensus       162 ~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~  234 (269)
                      ++|+++++ ++|||+|..+++|++++.+|..+..++..    +         .+..|.|||+|++|+|||+|.
T Consensus       160 ~~i~~d~~-g~i~v~d~~~~~V~~~d~~G~~~~~~g~~----g---------~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         160 NGVVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQIGGE----G---------ITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             EEEEECSS-SEEEEEEGGGTEEEEEETTCCEEEEESCT----T---------TSCSEEEEEECTTCCEEEEEC
T ss_pred             ceeeeccc-eeEEeeeccccceeeeecCCceeeeeccc----c---------cccCCcccccccCCeEEEEEC
Confidence            99999987 89999999999999999999988776543    1         347799999999999999994

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=5.2e-20  Score=157.61  Aligned_cols=166  Identities=16%  Similarity=0.156  Sum_probs=131.2

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi  109 (269)
                      +|..+..+  +...+..|.+++++ .++++|++|..++++.++    +++|++....+.           ...+..|.+|
T Consensus       101 ~g~~~~~~--~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~----~~~g~~~~~~g~-----------~~~~~~~~~i  162 (279)
T d1q7fa_         101 YGQFVRKF--GATILQHPRGVTVD-NKGRIIVVECKVMRVIIF----DQNGNVLHKFGC-----------SKHLEFPNGV  162 (279)
T ss_dssp             TSCEEEEE--CTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEE----CTTSCEEEEEEC-----------TTTCSSEEEE
T ss_pred             cccceeec--CCCcccccceeccc-cCCcEEEEeeccceeeEe----ccCCceeecccc-----------ccccccccee
Confidence            44444444  23457889999996 689999999999999999    678887665433           1357799999


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEE
Q 024317          110 AVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQI  186 (269)
Q Consensus       110 avd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~  186 (269)
                      ++|++|++||+|..+++|++++++|.  .++...              +.+..|.||+++++ |+|||+|..+ .+|++|
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~--------------g~~~~P~giavD~~-G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE--------------GITNYPIGVGINSN-GEILIADNHNNFNLTIF  227 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT--------------TTSCSEEEEEECTT-CCEEEEECSSSCEEEEE
T ss_pred             eeccceeEEeeeccccceeeeecCCceeeeeccc--------------ccccCCcccccccC-CeEEEEECCCCcEEEEE
Confidence            99999999999999999999999998  444321              34789999999998 8999999864 589999


Q ss_pred             ECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCcccc
Q 024317          187 NLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRLDPP  241 (269)
Q Consensus       187 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~~~~  241 (269)
                      +++|+.+..+....             ....|.+||++++|+|||++.++++...
T Consensus       228 ~~~G~~~~~~~~~~-------------~~~~p~~vav~~dG~l~V~~~n~~v~~f  269 (279)
T d1q7fa_         228 TQDGQLISALESKV-------------KHAQCFDVALMDDGSVVLASKDYRLYIY  269 (279)
T ss_dssp             CTTSCEEEEEEESS-------------CCSCEEEEEEETTTEEEEEETTTEEEEE
T ss_pred             CCCCCEEEEEeCCC-------------CCCCEeEEEEeCCCcEEEEeCCCeEEEE
Confidence            99998776654331             2256999999999999999977765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=1.3e-20  Score=159.72  Aligned_cols=151  Identities=13%  Similarity=0.183  Sum_probs=120.4

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..|.+|+++ .++++|++|..++++.+++    ..+........            ..+..|.+|+++++|++||+|.
T Consensus        96 ~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~----~~~~~~~~~~~------------~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          96 GLNYPEGLAVD-TQGAVYVADRGNNRVVKLA----AGSKTQTVLPF------------TGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             SCCSEEEEEEC-TTCCEEEEEGGGTEEEEEC----TTCSSCEECCC------------CSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeeeccccccc-ccceeEeeccccccccccc----cccceeeeeee------------cccCCcceeeecCCCCEeeecc
Confidence            46789999996 5889999999999999994    44443333221            2477999999999999999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .+++|.+++.++. ......              ..+..|+||+++++ |+|||+|..+++|++++.++.........  
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~--------------~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~~~~~~--  221 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPF--------------TDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFT--  221 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCC--------------SSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCEECCCC--
T ss_pred             ccccccccccccceeeeeec--------------cccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEEEEccC--
Confidence            9999999999887 444332              23789999999987 89999999999999999887765544322  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcCC-CCcc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHT-GRLD  239 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~-g~~~  239 (269)
                                  .+..|.+||+|++|+|||+|.. +|++
T Consensus       222 ------------~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         222 ------------GLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             ------------SCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ------------CCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence                        3477999999999999999954 4443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.4e-18  Score=146.99  Aligned_cols=153  Identities=15%  Similarity=0.204  Sum_probs=119.2

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      .+..|.+|+++ .+++|||+|..+++|.+++     ++.......            ...+..|.+|++|++|+||++|.
T Consensus        55 ~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~-----~~~~~~~~~------------~~~~~~p~~iavd~~g~i~v~d~  116 (260)
T d1rwia_          55 GLYQPQGLAVD-GAGTVYVTDFNNRVVTLAA-----GSNNQTVLP------------FDGLNYPEGLAVDTQGAVYVADR  116 (260)
T ss_dssp             SCCSCCCEEEC-TTCCEEEEETTTEEEEECT-----TCSCCEECC------------CCSCCSEEEEEECTTCCEEEEEG
T ss_pred             CccCceEEEEc-CCCCEEEeeeeeceeeeee-----eccceeeee------------eeeeeecccccccccceeEeecc
Confidence            46689999996 5899999999988877652     222222211            12467999999999999999999


Q ss_pred             CCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          123 SNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       123 ~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      .++++.+++..+. ......              ..+..|++|+++++ +++||+|..+++|.+++.++.........  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~~~~~--  179 (260)
T d1rwia_         117 GNNRVVKLAAGSKTQTVLPF--------------TGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLPFT--  179 (260)
T ss_dssp             GGTEEEEECTTCSSCEECCC--------------CSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECCCS--
T ss_pred             ccccccccccccceeeeeee--------------cccCCcceeeecCC-CCEeeeccccccccccccccceeeeeecc--
Confidence            9999999999887 544432              12788999999997 88999999999999999998876554322  


Q ss_pred             cCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                                  .+..|.||++|++|+|||+|. ++++....
T Consensus       180 ------------~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         180 ------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             ------------SCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             ------------ccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence                        347799999999999999995 45555433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.74  E-value=3.6e-17  Score=142.42  Aligned_cols=162  Identities=10%  Similarity=0.073  Sum_probs=113.7

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC-
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~-  123 (269)
                      ..|.||+++++.+.+||+|.. ++|.+++    .+|....+.....        ....|+.|+++++|++|+|||+|.. 
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~-~~i~~~~----~~g~~~~~~~~~~--------~g~~~~~pndl~~d~~G~lyvtd~~~  137 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMR-LGLLVVQ----TDGTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAG  137 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETT-TEEEEEE----TTSCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred             CcceeEEEeCCCCEEEEEECC-CeEEEEe----CCCcEEEEEeccc--------cccccCCCcEEEECCCCCEEEecCcc
Confidence            359999997655679999964 6788885    5666555432211        1235789999999999999999964 


Q ss_pred             --------------CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCC----EEEEEECCCCeEE
Q 024317          124 --------------NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHIC----ALLISDHGNQLIR  184 (269)
Q Consensus       124 --------------n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g----~LyVaD~~n~~I~  184 (269)
                                    .++|++++++|. ..+...                +..|+||++++++.    .|||+|+.+++|+
T Consensus       138 ~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~----------------~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~  201 (314)
T d1pjxa_         138 EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLW  201 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE----------------ESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred             CcccccccceeccCCceEEEEeecCceeEeeCC----------------cceeeeeEECCCCCcceeEEEEEeecccceE
Confidence                          348999999998 554432                77899999988733    6999999999999


Q ss_pred             EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccccc
Q 024317          185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDPPL  242 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~~~  242 (269)
                      +|+.+..............       .+.....|.||++|.+|+|||++ ..++++..+
T Consensus       202 ~~d~~~~g~~~~~~~~~~~-------~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         202 SYDIKGPAKIENKKVWGHI-------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEETTEEEEEEEEEEC-------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EeeccCccccceeeEEEEc-------cccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            9986543222111100000       00022459999999999999999 456666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.71  E-value=3.5e-16  Score=136.17  Aligned_cols=159  Identities=13%  Similarity=0.070  Sum_probs=111.5

Q ss_pred             CCcceEEEecCCCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      ..|.+|+++ .+|++||++..    ...|..++.   ..+.+.......           .....|+++++|++|++||+
T Consensus        82 ~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~---~~~~~~~~~~~~-----------~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1          82 ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATE---NGDNLQDIIEDL-----------STAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECT---TSCSCEEEECSS-----------SSCCCEEEEEECTTSCEEEE
T ss_pred             CCeeEEEEC-CCCCEEEEecCCCccceeEEEEcC---CCceeeeeccCC-----------CcccCCcceeEEeccceeec
Confidence            479999996 58999999864    456777752   333444443221           23568999999999999999


Q ss_pred             eCCC------CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCC-
Q 024317          121 DKSN------HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPE-  191 (269)
Q Consensus       121 D~~n------~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~-  191 (269)
                      |..+      +.+.++++++.  ..+..                .+..|+||+++++++.|||+|+.+++|++|+.+.. 
T Consensus       147 d~~~~~~~~~g~v~~~~~dg~~~~~~~~----------------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         147 DFRGYSTNPLGGVYYVSPDFRTVTPIIQ----------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEE----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             ccccccccCcceeEEEecccceeEEEee----------------ccceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence            9753      45889999886  44432                27789999999997789999999999999986543 


Q ss_pred             -eEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCccccc
Q 024317          192 -DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL  242 (269)
Q Consensus       192 -~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~  242 (269)
                       ......... .       ........|.||++|.+|+|||++. .++++..+
T Consensus       211 ~~~~~~~~~~-~-------~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         211 VTIQPFGATI-P-------YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEEEE-E-------EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             ceecccccee-e-------eccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence             221111110 0       0000224599999999999999994 56666544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.7e-15  Score=128.76  Aligned_cols=153  Identities=17%  Similarity=0.075  Sum_probs=117.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.+||++...++||++|...++|.++++    +|. ...+.             ...+..|.+|++|+ +|.||++
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~----~g~~~~~~~-------------~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLF-------------RENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSSSEEEEE-------------ECTTCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEec----CCceEEEEE-------------cCCCCCcceEEEEcccCeEEEe
Confidence            35689999998789999999999999999975    333 22222             12356899999998 7889999


Q ss_pred             eCCC-CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEec
Q 024317          121 DKSN-HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSS  197 (269)
Q Consensus       121 D~~n-~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~  197 (269)
                      |.+. .+|.+.+.+|.  ..+...               .+..|+||++|+.++.||++|...++|.+++.+|.......
T Consensus       138 ~~~~~~~I~r~~~dGs~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~  202 (266)
T d1ijqa1         138 DWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  202 (266)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEECS---------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ccCCCcceeEeccCCCceeccccc---------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE
Confidence            9764 58999999998  444432               26789999999988899999999999999999986543322


Q ss_pred             ccCccCCCcccceeeeeccceeeEEEecCCcEEEEc-CCCCccc
Q 024317          198 QSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR-HTGRLDP  240 (269)
Q Consensus       198 ~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad-~~g~~~~  240 (269)
                      ...   .         .+..|.+|+++ .+.||++| ..+++..
T Consensus       203 ~~~---~---------~~~~p~~lav~-~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         203 EDE---K---------RLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             ECT---T---------TTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eCC---C---------cccccEEEEEE-CCEEEEEECCCCeEEE
Confidence            210   0         23679999999 68999999 4555544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.67  E-value=6.3e-16  Score=134.41  Aligned_cols=152  Identities=9%  Similarity=0.061  Sum_probs=110.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCC---------------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCc
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSS---------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPK  107 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~---------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~  107 (269)
                      .+..|.+++++ .+|+|||+|..               .++|+++    +++|++..+..              .+..|+
T Consensus       115 ~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~----~~dg~~~~~~~--------------~~~~pN  175 (314)
T d1pjxa_         115 RMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF----TTDGQMIQVDT--------------AFQFPN  175 (314)
T ss_dssp             BCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE----CTTSCEEEEEE--------------EESSEE
T ss_pred             ccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEE----eecCceeEeeC--------------Ccceee
Confidence            46679999996 58999999864               3478887    56777665542              367899


Q ss_pred             eEEEcCCCC-----EEEEeCCCCEEEEEe--CCcc---eE-EecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE
Q 024317          108 SFAVDMKGN-----IYVADKSNHVIRKIT--NLGV---TT-IAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS  176 (269)
Q Consensus       108 giavd~~G~-----lyVaD~~n~~I~~~~--~~g~---~~-~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa  176 (269)
                      ||+++++++     |||+|+.+++|++++  .+|.   .. +.....            .....|.||++|.+ |+|||+
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~------------~~~~~pdGiavD~~-GnlyVa  242 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG------------THEGGADGMDFDED-NNLLVA  242 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC------------CSSCEEEEEEEBTT-CCEEEE
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc------------cccccceeeEEecC-CcEEEE
Confidence            999988764     999999999999987  3443   11 222111            11346999999987 999999


Q ss_pred             ECCCCeEEEEECCCCeE-EEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEc-CCCCcccc
Q 024317          177 DHGNQLIRQINLKPEDC-SKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR-HTGRLDPP  241 (269)
Q Consensus       177 D~~n~~I~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad-~~g~~~~~  241 (269)
                      +.++++|++|++++... .....+               ...|.++|+++++ .|||++ .+|+++.-
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~p---------------~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRCP---------------FEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECS---------------SSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EcCCCEEEEEeCCCCEEEEEEECC---------------CCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            99999999999886543 222111               1568899999998 599999 45666653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.6e-15  Score=124.19  Aligned_cols=149  Identities=17%  Similarity=0.119  Sum_probs=115.5

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.+||+|...++||++|...++|.++++    +|. ..++..             ..+..|.+|++|+ .|.||++
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~----dg~~~~~l~~-------------~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM----DGTQRRVLFD-------------TGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEC-------------SSCSSEEEEEEETTTTEEEEE
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEec----CCceEEEEec-------------ccccCCcEEEEecccCcEEEe
Confidence            35689999998778999999999999999975    332 223322             1356899999998 7779999


Q ss_pred             eCC--CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          121 DKS--NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       121 D~~--n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      +.+  +.+|.+.+.+|.  ..+...               .+..|++|++|+.++.||++|.+.++|.+++.+|......
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~---------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v  204 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQD---------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECT---------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             ecCCCCcEEEEecCCCCCceeeeee---------------cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE
Confidence            976  357999999997  444321               2678999999998889999999999999999998765443


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCCcEEEEcC-CCCcc
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRH-TGRLD  239 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~-~g~~~  239 (269)
                      ..               .+..|.||+++ .+.||++|. .+++.
T Consensus       205 ~~---------------~~~~P~~lav~-~~~lYwtd~~~~~I~  232 (263)
T d1npea_         205 LE---------------GLQYPFAVTSY-GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             EE---------------CCCSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EC---------------CCCCcEEEEEE-CCEEEEEECCCCEEE
Confidence            21               23569999999 689999994 44444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.4e-15  Score=124.10  Aligned_cols=156  Identities=16%  Similarity=0.133  Sum_probs=116.6

Q ss_pred             CCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC-CccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~-~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVa  120 (269)
                      .+..|.+|+++..++.||++|...++|++.+++... .+....+.             ...+..|.+||+|. .++||++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-------------~~~~~~p~glAvD~~~~~lY~~   94 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------SRDIQAPDGLAVDWIHSNIYWT   94 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------CSSCSCCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-------------eCCCCCcceEEEeeccceEEEE
Confidence            456899999987889999999999999998763111 11222222             12367899999996 7779999


Q ss_pred             eCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-CeEEEEECCCCeEEEecc
Q 024317          121 DKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-QLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       121 D~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-~~I~~~~~~~~~~~~~~~  198 (269)
                      |..+++|.+++.+|. ......              ..+..|.+|++++..|.||++|.+. .+|.+.+.+|........
T Consensus        95 d~~~~~I~v~~~~g~~~~~~~~--------------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          95 DSVLGTVSVADTKGVKRKTLFR--------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             ETTTTEEEEEETTSSSEEEEEE--------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             ecCCCEEEeEecCCceEEEEEc--------------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            999999999999998 333221              1267899999999889999999864 589999999986654433


Q ss_pred             cCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCcc
Q 024317          199 SGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLD  239 (269)
Q Consensus       199 ~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~  239 (269)
                      .              .+..|.||++|..+ +||++|. .+++.
T Consensus       161 ~--------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~  189 (266)
T d1ijqa1         161 E--------------NIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (266)
T ss_dssp             S--------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             c--------------ccceeeEEEeeccccEEEEecCCcCEEE
Confidence            2              24679999999765 7999994 45555

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.2e-15  Score=124.30  Aligned_cols=150  Identities=13%  Similarity=0.049  Sum_probs=115.0

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~lyVaD~~n  124 (269)
                      .+.+|+++..++.||++|...++|++.++.  . +...++..             ..+..|.+||+|. .++||++|...
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~--g-~~~~~v~~-------------~~~~~p~~iAvD~~~~~lY~~d~~~  100 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLH--G-GEPTTIIR-------------QDLGSPEGIALDHLGRTIFWTDSQL  100 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESS--S-CCCEEEEC-------------TTCCCEEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcc--c-CCcEEEEE-------------eccccccEEEEeccCCeEEEeccCC
Confidence            467899987889999999999999999762  2 22333331             1256899999996 77799999999


Q ss_pred             CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC--CeEEEEECCCCeEEEecccC
Q 024317          125 HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN--QLIRQINLKPEDCSKSSQSG  200 (269)
Q Consensus       125 ~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n--~~I~~~~~~~~~~~~~~~~g  200 (269)
                      ++|.+++.+|.  ..+...               .+..|.+|+++|..+.||+++.+.  .+|.+.+.+|......... 
T Consensus       101 ~~I~~~~~dg~~~~~l~~~---------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~-  164 (263)
T d1npea_         101 DRIEVAKMDGTQRRVLFDT---------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-  164 (263)
T ss_dssp             TEEEEEETTSCSCEEEECS---------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-
T ss_pred             CEEEEEecCCceEEEEecc---------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee-
Confidence            99999999988  444432               267899999999999999999864  4699999988754443322 


Q ss_pred             ccCCCcccceeeeeccceeeEEEecCC-cEEEEc-CCCCccc
Q 024317          201 SALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR-HTGRLDP  240 (269)
Q Consensus       201 ~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad-~~g~~~~  240 (269)
                                   .+..|.|||+|..+ +||++| ..+.+..
T Consensus       165 -------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         165 -------------NLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             -------------TCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -------------cccccceEEEeecCcEEEEEeCCCCEEEE
Confidence                         24679999999665 899999 4555653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.62  E-value=3.9e-14  Score=121.69  Aligned_cols=174  Identities=9%  Similarity=-0.013  Sum_probs=121.6

Q ss_pred             CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      .+.+.++..+    .+|++||++ .+|+|||+|..+++|+++    +++|....+...              -..|.+++
T Consensus        18 ~~v~~~~p~~----~~~e~iAv~-pdG~l~vt~~~~~~I~~i----~p~g~~~~~~~~--------------~~~~~gla   74 (302)
T d2p4oa1          18 AKIITSFPVN----TFLENLASA-PDGTIFVTNHEVGEIVSI----TPDGNQQIHATV--------------EGKVSGLA   74 (302)
T ss_dssp             EEEEEEECTT----CCEEEEEEC-TTSCEEEEETTTTEEEEE----CTTCCEEEEEEC--------------SSEEEEEE
T ss_pred             ccEEEECCCC----CCcCCEEEC-CCCCEEEEeCCCCEEEEE----eCCCCEEEEEcC--------------CCCcceEE
Confidence            3445555332    269999997 489999999999999999    578887776533              23689999


Q ss_pred             EcCCCCEEEEeCCCCEEEEEeC---Ccc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          111 VDMKGNIYVADKSNHVIRKITN---LGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       111 vd~~G~lyVaD~~n~~I~~~~~---~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      ++++|++||+++.++.+.+++.   .+. ..+....              ....|++++++++ +++||+|..+++++++
T Consensus        75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--------------DAIFLNGITPLSD-TQYLTADSYRGAIWLI  139 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--------------TCSCEEEEEESSS-SEEEEEETTTTEEEEE
T ss_pred             EcCCCCeEEEecCCceEEEEEecccccceeeccccC--------------CccccceeEEccC-CCEEeeccccccceee
Confidence            9999999999988888777764   344 4444321              1456899999987 8999999999999999


Q ss_pred             ECCCCeEEEecccC--cc-C-----------------------CCcccc-------------eeeeeccceeeEEEecCC
Q 024317          187 NLKPEDCSKSSQSG--SA-L-----------------------GAVSVW-------------VLVSVLSCLVSLVIGFVA  227 (269)
Q Consensus       187 ~~~~~~~~~~~~~g--~~-~-----------------------g~~~~~-------------~~~~~l~~p~gia~d~~g  227 (269)
                      +..+..........  .. .                       .....+             ........|.||++|++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG  219 (302)
T d2p4oa1         140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG  219 (302)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC
T ss_pred             eccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC
Confidence            98876544321110  00 0                       000000             000124678999999999


Q ss_pred             cEEEEc-CCCCccccc
Q 024317          228 RPYIIR-HTGRLDPPL  242 (269)
Q Consensus       228 ~lyVad-~~g~~~~~~  242 (269)
                      +|||++ ..++++...
T Consensus       220 ~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         220 NLYGATHIYNSVVRIA  235 (302)
T ss_dssp             CEEEECBTTCCEEEEC
T ss_pred             CEEEEEcCCCcEEEEC
Confidence            999998 456666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.60  E-value=2.3e-14  Score=124.40  Aligned_cols=151  Identities=13%  Similarity=0.132  Sum_probs=108.8

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCcc-EEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~-~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~  122 (269)
                      ....+|++++ .+|+||++|..+++|++++    +++. .......             ....|.+|+++++|+||||+.
T Consensus        39 ~~~lEG~~~D-~~G~Ly~~D~~~g~I~ri~----p~g~~~~~~~~~-------------~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          39 GLQLEGLNFD-RQGQLFLLDVFEGNIFKIN----PETKEIKRPFVS-------------HKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CCCEEEEEEC-TTSCEEEEETTTCEEEEEC----TTTCCEEEEEEC-------------SSSSEEEEEECTTSCEEEEEC
T ss_pred             CcCcEeCEEC-CCCCEEEEECCCCEEEEEE----CCCCeEEEEEeC-------------CCCCeeEEEECCCCCEEEEec
Confidence            3356899996 6889999999999999995    4443 3332211             123699999999999999986


Q ss_pred             C----CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC------CeEEEEECCC
Q 024317          123 S----NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN------QLIRQINLKP  190 (269)
Q Consensus       123 ~----n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n------~~I~~~~~~~  190 (269)
                      .    ..+|..++..+.  ..+....             .....|++++++++ |+|||+|..+      +.++++++++
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQDIIEDL-------------STAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDF  166 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEEEECSS-------------SSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCccceeEEEEcCCCceeeeeccCC-------------CcccCCcceeEEec-cceeecccccccccCcceeEEEeccc
Confidence            4    457888888775  4443321             12567999999997 8999999864      3478887777


Q ss_pred             CeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc-CCCCcccc
Q 024317          191 EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR-HTGRLDPP  241 (269)
Q Consensus       191 ~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad-~~g~~~~~  241 (269)
                      ..+.....               .+..|.||+++++|+ +||+| ..++++..
T Consensus       167 ~~~~~~~~---------------~~~~pnGia~s~dg~~lyvad~~~~~I~~~  204 (319)
T d2dg1a1         167 RTVTPIIQ---------------NISVANGIALSTDEKVLWVTETTANRLHRI  204 (319)
T ss_dssp             CCEEEEEE---------------EESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             ceeEEEee---------------ccceeeeeeeccccceEEEecccCCceEEE
Confidence            65433211               346799999999995 99999 45666544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.43  E-value=6.3e-12  Score=107.72  Aligned_cols=168  Identities=10%  Similarity=0.107  Sum_probs=112.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC--
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS--  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~--  123 (269)
                      .|.+++.. .+|.++|+.  .+.|+++|.   .+|+++.+....         .....+.|+++++|++|++||++..  
T Consensus        60 ~~~~i~~~-~dg~l~va~--~~gl~~~d~---~tg~~~~l~~~~---------~~~~~~~~nd~~vd~~G~iw~~~~~~~  124 (295)
T d2ghsa1          60 MGSALAKI-SDSKQLIAS--DDGLFLRDT---ATGVLTLHAELE---------SDLPGNRSNDGRMHPSGALWIGTMGRK  124 (295)
T ss_dssp             CEEEEEEE-ETTEEEEEE--TTEEEEEET---TTCCEEEEECSS---------TTCTTEEEEEEEECTTSCEEEEEEETT
T ss_pred             CcEEEEEe-cCCCEEEEE--eCccEEeec---ccceeeEEeeee---------cCCCcccceeeEECCCCCEEEEecccc
Confidence            57888886 589999997  468999974   567777765321         1123568999999999999999853  


Q ss_pred             ----CCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecc
Q 024317          124 ----NHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQ  198 (269)
Q Consensus       124 ----n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~  198 (269)
                          ...+.+++. |. ..+..                .+..|+|+++++++..+|++|+.+++|++++.+.........
T Consensus       125 ~~~~~g~l~~~~~-g~~~~~~~----------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~  187 (295)
T d2ghsa1         125 AETGAGSIYHVAK-GKVTKLFA----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  187 (295)
T ss_dssp             CCTTCEEEEEEET-TEEEEEEE----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             ccccceeEeeecC-CcEEEEee----------------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence                234555543 44 33332                267899999999978899999999999999876543222111


Q ss_pred             cCccCCCcccce-eeeeccceeeEEEecCCcEEEEcC-CCCccccc--ccccccccCC
Q 024317          199 SGSALGAVSVWV-LVSVLSCLVSLVIGFVARPYIIRH-TGRLDPPL--QHDMEALPNQ  252 (269)
Q Consensus       199 ~g~~~g~~~~~~-~~~~l~~p~gia~d~~g~lyVad~-~g~~~~~~--~~~~~~~~~~  252 (269)
                      .       ..+. ..-....|.|+++|.+|+|||+.. .+++...+  ....+.++.|
T Consensus       188 ~-------~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP  238 (295)
T d2ghsa1         188 A-------EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP  238 (295)
T ss_dssp             C-------EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred             e-------EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCC
Confidence            1       0000 000124699999999999999994 55566444  3333444433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.42  E-value=1.2e-11  Score=105.75  Aligned_cols=167  Identities=11%  Similarity=0.002  Sum_probs=113.8

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~  123 (269)
                      ...|.+++++ .+|++||++...+.+.++++. ...++...+...            .....|++++++++|++||+|..
T Consensus        67 ~~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          67 EGKVSGLAFT-SNGDLVATGWNADSIPVVSLV-KSDGTVETLLTL------------PDAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             SSEEEEEEEC-TTSCEEEEEECTTSCEEEEEE-CTTSCEEEEEEC------------TTCSCEEEEEESSSSEEEEEETT
T ss_pred             CCCcceEEEc-CCCCeEEEecCCceEEEEEec-ccccceeecccc------------CCccccceeEEccCCCEEeeccc
Confidence            3479999996 589999999988888888653 345666555432            12457899999999999999999


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCC-------CC---------------------------CCCCccc----cccccCceE
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKK-------EG---------------------------RADGPAQ----NASFSNDFE  163 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~-------~~---------------------------~~~~~~~----~~~l~~P~g  163 (269)
                      +.+|++++..+.  ..+.......       ..                           ..++...    ......|.|
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdg  212 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDD  212 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSS
T ss_pred             cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcc
Confidence            999999997654  2221110000       00                           0000000    112467889


Q ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec---CC-cEEEEcCCCCc
Q 024317          164 LTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF---VA-RPYIIRHTGRL  238 (269)
Q Consensus       164 ia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~---~g-~lyVad~~g~~  238 (269)
                      |+++++ |+|||++..+++|++++++++........             ..+..|.++|++.   |+ .|||+...|..
T Consensus       213 ia~d~d-G~l~va~~~~~~V~~i~p~G~~~~~~~~~-------------~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~  277 (302)
T d2p4oa1         213 FAFDVE-GNLYGATHIYNSVVRIAPDRSTTIIAQAE-------------QGVIGSTAVAFGQTEGDCTAIYVVTNGGMF  277 (302)
T ss_dssp             EEEBTT-CCEEEECBTTCCEEEECTTCCEEEEECGG-------------GTCTTEEEEEECCSTTTTTEEEEEECTTSS
T ss_pred             eEECCC-CCEEEEEcCCCcEEEECCCCCEEEEEecC-------------CCCCCceEEEEcCCCCCCCEEEEECCCCcc
Confidence            999987 88999998889999999988765543322             0236699999953   44 69999876433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.21  E-value=1.4e-10  Score=99.06  Aligned_cols=149  Identities=11%  Similarity=0.023  Sum_probs=103.7

Q ss_pred             CCCCcceEEEecCCCeEEEEeCC------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSS------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      ....|.+++++ .+|++|+++..      ...++++     .+|++..+.              ..+..|++++++++++
T Consensus       101 ~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~-----~~g~~~~~~--------------~~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1         101 PGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHV-----AKGKVTKLF--------------ADISIPNSICFSPDGT  160 (295)
T ss_dssp             TTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEE-----ETTEEEEEE--------------EEESSEEEEEECTTSC
T ss_pred             CcccceeeEEC-CCCCEEEEeccccccccceeEeee-----cCCcEEEEe--------------eccCCcceeeecCCCc
Confidence            34568899995 58999999752      2345554     245555443              2367899999999887


Q ss_pred             -EEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          117 -IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       117 -lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                       +|++|+.+++|++++-+.. ....+.... +..     ....-..|.|+++|.+ |+|||+...+++|.+|+++|+.+.
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~-~~~-----~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~G~~~~  233 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEV-FID-----STGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTDGNHIA  233 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEE-EEE-----CTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECTTCCEEE
T ss_pred             eEEEeecccceeeEeeecccccccccceEE-Eec-----cCcccccccceEEcCC-CCEEeeeeCCCceEEecCCCcEee
Confidence             9999999999999985542 111111000 000     0011346999999987 999999999999999999998887


Q ss_pred             EecccCccCCCcccceeeeeccceeeEEEec-CC-cEEEEc
Q 024317          195 KSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VA-RPYIIR  233 (269)
Q Consensus       195 ~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g-~lyVad  233 (269)
                      .+.-+.               .+|..+|+.. +. .|||+.
T Consensus       234 ~i~lP~---------------~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         234 RYEVPG---------------KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEECSC---------------SBEEEEEEESTTSCEEEEEE
T ss_pred             EecCCC---------------CceEEEEEeCCCCCEEEEEE
Confidence            765441               4588888863 43 799986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=2.6e-08  Score=87.05  Aligned_cols=174  Identities=14%  Similarity=0.053  Sum_probs=106.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      .+|++++++|++..+||+|.+.++|++++.  +.+|........-.         ...-..|.+++++++|. +||+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~--~~~g~~~~~~~~~~---------~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRK--LASGEVELVGSVDA---------PDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEE--CTTSCEEEEEEEEC---------SSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEc--cCCCceeeccceee---------cCCCCceEEEEECCCCceEEEeccC
Confidence            468999999877889999999999999875  45665544321100         01124899999999998 9999999


Q ss_pred             CCEEEEEeCCcc--e---EEecCCCCCCCCC-CCccccccccCceEEEEeCCCCEEEEEECCCCe-----EEEEECCC--
Q 024317          124 NHVIRKITNLGV--T---TIAGGGSKKEGRA-DGPAQNASFSNDFELTFVPHICALLISDHGNQL-----IRQINLKP--  190 (269)
Q Consensus       124 n~~I~~~~~~g~--~---~~~g~~~~~~~~~-~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~-----I~~~~~~~--  190 (269)
                      .++|.+++.+..  .   ............. ...........|..|+++|++..|||+..+.+.     |..|+.+.  
T Consensus       214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g  293 (365)
T d1jofa_         214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence            999998875432  1   1111100000000 001111234567899999998899999875443     66665443  


Q ss_pred             CeEEEecccCccCCCcccceeeeeccceeeEEEec-CCc-EEEEc-CCCCcc
Q 024317          191 EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VAR-PYIIR-HTGRLD  239 (269)
Q Consensus       191 ~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~-lyVad-~~g~~~  239 (269)
                      .............          .-..|.+|++++ +|+ |||++ .++.+.
T Consensus       294 ~~~~~~~~~~~~~----------~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         294 SIEKQLFLSPTPT----------SGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             CEEEEEEEEECSS----------CCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             ceeeEeEeeEEEc----------CCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            2211111000000          115699999996 774 99998 445444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.95  E-value=1.1e-08  Score=88.91  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=99.0

Q ss_pred             CCcceEEEec-CCC--eEEEEeC--CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEE
Q 024317           45 INPHSVIDRP-GSS--DLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV  119 (269)
Q Consensus        45 ~~P~giav~~-~~g--~lyV~D~--~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyV  119 (269)
                      .+|+||.+.. .++  .|||.+.  .+.+|-.+++.  .++...+..+.-         ....+..|++|++..+|.+|+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~--~~~~~l~~~~~v---------~~~~~~~pNDv~~~~~g~fy~  165 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQ--EEEKSLLHLKTI---------RHKLLPSVNDIVAVGPEHFYA  165 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEE--TTTTEEEEEEEE---------CCTTCSSEEEEEEEETTEEEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEe--CCCCeEEEEeec---------CCccccCccceEEecCCCEEE
Confidence            4799998632 233  5888875  45677766653  333323333221         123577899999999999999


Q ss_pred             EeCC-----------------CCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          120 ADKS-----------------NHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       120 aD~~-----------------n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ++..                 ...+..+++.....++.                .+..|+||++++++..|||+++..++
T Consensus       166 Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~----------------~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         166 TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE----------------GFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             EESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE----------------EESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC----------------CCCccceeEECCCCCEEEEEeCCCCe
Confidence            9742                 12344444322222222                27889999999998899999999999


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEec-CCcEEEEcCC
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGF-VARPYIIRHT  235 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~-~g~lyVad~~  235 (269)
                      |++|+..+.........           .. ....|.+|.+|+ +|.+|++-+.
T Consensus       230 i~~y~~~~~~~l~~~~~-----------~~-l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         230 IHVYEKHANWTLTPLRV-----------LS-FDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             EEEEEECTTSCEEEEEE-----------EE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred             EEEEEeCCCcccceEEE-----------ec-CCCCCCccEEecCCCEEEEEECC
Confidence            99998876532111100           00 225599999995 6799999754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.76  E-value=5e-07  Score=74.11  Aligned_cols=128  Identities=12%  Similarity=0.179  Sum_probs=93.2

Q ss_pred             CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc
Q 024317           57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLGV  135 (269)
Q Consensus        57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~  135 (269)
                      ..+||++..++.|.++|+   .++++...+..+              ..|.+|+++++|. |||++..+++|.++|....
T Consensus         2 ~~~yV~~~~~~~v~v~D~---~t~~~~~~i~~g--------------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~   64 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDV---TSNKVTATIPVG--------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (301)
T ss_dssp             EEEEEEETTTTEEEEEET---TTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEEECCCCEEEEEEC---CCCeEEEEEECC--------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            368999999999999985   466655544321              2689999999998 8999999999999996543


Q ss_pred             ---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceee
Q 024317          136 ---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLV  212 (269)
Q Consensus       136 ---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  212 (269)
                         .++..                 ...|.++++++++..++++...+..+..++............             
T Consensus        65 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  114 (301)
T d1l0qa2          65 NVIATVPA-----------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-------------  114 (301)
T ss_dssp             EEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred             ceeeeeec-----------------cccccccccccccccccccccccceeeecccccceeeeeccc-------------
Confidence               33322                 246899999999778999999999999999877654433221             


Q ss_pred             eeccceeeEEEecCCc-EEEEc
Q 024317          213 SVLSCLVSLVIGFVAR-PYIIR  233 (269)
Q Consensus       213 ~~l~~p~gia~d~~g~-lyVad  233 (269)
                        ...|..++++++|+ ++++.
T Consensus       115 --~~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2         115 --GKSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             --SSSEEEEEECTTSSEEEEEE
T ss_pred             --cccceEEEeecCCCeeeeee
Confidence              13456677777774 33444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.75  E-value=1.8e-06  Score=70.57  Aligned_cols=155  Identities=13%  Similarity=0.180  Sum_probs=107.6

Q ss_pred             CCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCce
Q 024317           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (269)
Q Consensus        29 ~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~g  108 (269)
                      ..+..+.++.-    ...|.+|+++|++..|||++..+++|..+|+   .+++.......              ...|.+
T Consensus        20 ~t~~~~~~i~~----g~~p~~va~spdG~~l~v~~~~~~~i~v~d~---~t~~~~~~~~~--------------~~~~~~   78 (301)
T d1l0qa2          20 TSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHSNDVSIIDT---ATNNVIATVPA--------------GSSPQG   78 (301)
T ss_dssp             TTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGGTEEEEEET---TTTEEEEEEEC--------------SSSEEE
T ss_pred             CCCeEEEEEEC----CCCceEEEEeCCCCEEEEEECCCCEEEEEEC---CCCceeeeeec--------------cccccc
Confidence            34555555432    2479999998766779999999999999986   35554433211              236899


Q ss_pred             EEEcCCCC-EEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEE
Q 024317          109 FAVDMKGN-IYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQ  185 (269)
Q Consensus       109 iavd~~G~-lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~  185 (269)
                      +++++++. +|++......+..++....  ......                ...|..+++++++..++++...+..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----------------GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccceeeecccccceeeeeccc----------------cccceEEEeecCCCeeeeeeccccceee
Confidence            99999888 8888888889998886543  222221                3457889999997788899988888888


Q ss_pred             EECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCC
Q 024317          186 INLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHT  235 (269)
Q Consensus       186 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~  235 (269)
                      ++............               ...|..+++.+++ .+|++...
T Consensus       143 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         143 INTVTKAVINTVSV---------------GRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EETTTTEEEEEEEC---------------CSSEEEEEECTTSSEEEEEETT
T ss_pred             eeccccceeeeccc---------------CCCceEEEeeccccceeeeccc
Confidence            88776654432211               1346777777777 56666643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.2e-07  Score=77.68  Aligned_cols=155  Identities=9%  Similarity=0.035  Sum_probs=101.4

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      ..|.+|+++|++..||++....++|..+++.  .++....+.+.           ...-..|.+++++++|+ ||+++..
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~--~~~~~~~~~~~-----------~~~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA--PDDGALTFAAE-----------SALPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEEC--TTTCCEEEEEE-----------EECSSCCSEEEECTTSSEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEe--CCCCcEEEeee-----------cccCCCceEEEEcCCCCEEeecccC
Confidence            4689999998777899999988999888763  33322222211           11234799999999998 9999998


Q ss_pred             CCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCc
Q 024317          124 NHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGS  201 (269)
Q Consensus       124 n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~  201 (269)
                      +..|..++.+..  .......             ..-..|.++++++++..+++++.....|+.++..............
T Consensus       104 ~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_         104 AGNVSVTRLEDGLPVGVVDVV-------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             TTEEEEEEEETTEEEEEEEEE-------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCceeeeccccccceeccccc-------------CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence            888887765433  1111110             0124678999999988899999999999998866543222111100


Q ss_pred             cCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          202 ALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       202 ~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                      .        .......|..+++++++ .+|++.
T Consensus       171 ~--------~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         171 V--------TTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             E--------ECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             e--------eeecCCCccEEEEeccceeEEeec
Confidence            0        00012557889998888 444444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.8e-07  Score=76.94  Aligned_cols=138  Identities=8%  Similarity=-0.048  Sum_probs=92.6

Q ss_pred             CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEe--CC
Q 024317           57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKIT--NL  133 (269)
Q Consensus        57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~--~~  133 (269)
                      -.+||+....+.|+.|++  +.++.+..+.-.            ..-..|.+|+++++|+ |||+....++|+.++  .+
T Consensus         4 ~~v~v~~~~~~~I~v~~~--~~~~~l~~~~~~------------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNL--NHEGALTLTQVV------------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEE--CTTSCEEEEEEE------------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEEEECCCCCcEEEEEE--cCCCCeEEEEEE------------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            468999999999999987  345544433210            0113688999999998 999998888888776  33


Q ss_pred             cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceee
Q 024317          134 GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLV  212 (269)
Q Consensus       134 g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  212 (269)
                      +. .+..+...             .-..|.+|+++|++..||+++..++.|..+..............  .         
T Consensus        70 ~~~~~~~~~~~-------------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~---------  125 (333)
T d1ri6a_          70 DGALTFAAESA-------------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--E---------  125 (333)
T ss_dssp             TCCEEEEEEEE-------------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--C---------
T ss_pred             CCcEEEeeecc-------------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccccc--C---------
Confidence            33 33333211             12468999999998889999999999988887766543322210  0         


Q ss_pred             eeccceeeEEEecCCc-EEEEc
Q 024317          213 SVLSCLVSLVIGFVAR-PYIIR  233 (269)
Q Consensus       213 ~~l~~p~gia~d~~g~-lyVad  233 (269)
                       ....|.+++++++++ +|+++
T Consensus       126 -~~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_         126 -GLDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             -CCTTBCCCEECTTSSEEEEEE
T ss_pred             -CCccceEEEeeecceeeeccc
Confidence             113467778888884 45555

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.53  E-value=1e-06  Score=79.02  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=106.1

Q ss_pred             CCCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCc-ccCCCCCcccccCCCCc
Q 024317           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPK  107 (269)
Q Consensus        29 ~~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~-~g~~dg~~~~~~~~~P~  107 (269)
                      ..++.++++.++   |..|.+|++.| +|+|||++...++|++++   ..++....+.+... .....+      -..-.
T Consensus        14 ~~~f~~~~ia~~---L~~P~~la~~p-dg~llVter~~G~i~~v~---~~~g~~~~i~~~~~~~~~~~g------e~GLL   80 (450)
T d1crua_          14 SENFDKKVILSN---LNKPHALLWGP-DNQIWLTERATGKILRVN---PESGSVKTVFQVPEIVNDADG------QNGLL   80 (450)
T ss_dssp             CTTSCEEEEECC---CSSEEEEEECT-TSCEEEEETTTCEEEEEC---TTTCCEEEEEECTTCCCCTTS------SCSEE
T ss_pred             cCCcEEEEEECC---CCCceEEEEeC-CCeEEEEEecCCEEEEEE---CCCCcEeecccCCccccccCC------CCcee
Confidence            356788888654   67999999964 899999998889999996   35677776665321 001111      01235


Q ss_pred             eEEEcCC----CCEEEEeCC-----------C-CEEEEEeCC--cc-----eE-EecCCCCCCCCCCCccccccccCceE
Q 024317          108 SFAVDMK----GNIYVADKS-----------N-HVIRKITNL--GV-----TT-IAGGGSKKEGRADGPAQNASFSNDFE  163 (269)
Q Consensus       108 giavd~~----G~lyVaD~~-----------n-~~I~~~~~~--g~-----~~-~~g~~~~~~~~~~~~~~~~~l~~P~g  163 (269)
                      ||++|++    +.||++-+.           + ..++++..+  ..     .. +.....            ..-..=..
T Consensus        81 gia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~gg~  148 (450)
T d1crua_          81 GFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQSGR  148 (450)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCCEEE
T ss_pred             eEEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccc------------cccccccc
Confidence            7999874    679996421           1 124444322  11     11 111110            11233357


Q ss_pred             EEEeCCCCEEEEEECC--------------------------------CCeEEEEECCCCeEEEecccCccCCCccccee
Q 024317          164 LTFVPHICALLISDHG--------------------------------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVL  211 (269)
Q Consensus       164 ia~~~~~g~LyVaD~~--------------------------------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~  211 (269)
                      |+++++ |.|||+-..                                .+.|.+++.++....  ..+.........|+.
T Consensus       149 l~fgpD-G~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~--dnP~~~~~~~ei~a~  225 (450)
T d1crua_         149 LVIGPD-QKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK--DNPSFNGVVSHIYTL  225 (450)
T ss_dssp             EEECTT-SCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT--TCCEETTEECSEEEB
T ss_pred             eeEcCC-CCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccc--cccccccccceEEEe
Confidence            999997 899998543                                267888888765321  001000111123333


Q ss_pred             eeeccceeeEEEecCCcEEEEcCC
Q 024317          212 VSVLSCLVSLVIGFVARPYIIRHT  235 (269)
Q Consensus       212 ~~~l~~p~gia~d~~g~lyVad~~  235 (269)
                        .+-.|.|+++|++|+||++|+.
T Consensus       226 --G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         226 --GHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             --CCSEEEEEEECTTSCEEEEEEC
T ss_pred             --ccccccceeecccceeeecccc
Confidence              3477999999999999999964

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=6.6e-06  Score=68.00  Aligned_cols=141  Identities=13%  Similarity=0.083  Sum_probs=89.0

Q ss_pred             EEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCC-cc-
Q 024317           59 LIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNL-GV-  135 (269)
Q Consensus        59 lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~-g~-  135 (269)
                      .+|+-...++|..||+   .++++.......           .....|.+|+++++|+ +||+...++.|.++|.. ++ 
T Consensus         3 ~~vt~~~d~~v~v~D~---~s~~~~~~i~~~-----------~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~   68 (337)
T d1pbyb_           3 YILAPARPDKLVVIDT---EKMAVDKVITIA-----------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEETTTEEEEEET---TTTEEEEEEECT-----------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEcCCCEEEEEEC---CCCeEEEEEECC-----------CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            4555555677888875   455544333211           1234789999999998 78999989999999954 44 


Q ss_pred             -eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCeEEEecccCccC
Q 024317          136 -TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-----------NQLIRQINLKPEDCSKSSQSGSAL  203 (269)
Q Consensus       136 -~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-----------n~~I~~~~~~~~~~~~~~~~g~~~  203 (269)
                       ..+... ..          ......|.++++++++..+|++...           ..++..++...........     
T Consensus        69 ~~~~~~~-~~----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----  132 (337)
T d1pbyb_          69 LGRIDLS-TP----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-----  132 (337)
T ss_dssp             EEEEECC-BT----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----
T ss_pred             EEEEecC-CC----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-----
Confidence             222211 10          1224568899999998889988752           3455555555443322211     


Q ss_pred             CCcccceeeeeccceeeEEEecCC-cEEEEcCCCCcc
Q 024317          204 GAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHTGRLD  239 (269)
Q Consensus       204 g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~g~~~  239 (269)
                                ....|.+++++++| .+|++.....++
T Consensus       133 ----------~~~~~~~~~~s~dg~~l~~~~~~~~~~  159 (337)
T d1pbyb_         133 ----------APRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             ----------CCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             ----------ccCCceEEEEcCCCCEEEEEcCCccee
Confidence                      12457889999999 777877655444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.52  E-value=5.1e-07  Score=78.53  Aligned_cols=166  Identities=7%  Similarity=0.005  Sum_probs=96.7

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe--C
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD--K  122 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD--~  122 (269)
                      .|..|++++++..||+++.+.-..+.+    ++++.+.......            .-..|+.+++++++. +||+.  +
T Consensus        41 ~~s~la~s~d~~~ly~~~~~~~~~~~i----~~~~~~~~~~~~~------------~~~~p~~v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAMKKWSSFAV----KSPTEIVHEASHP------------IGGHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBTEEEEEEE----EETTEEEEEEEEE------------CCSSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCEEEEcCCCCEEEEEeCCcEEEEEE----eCCCCeEEEeeec------------CCCCcEEEEECCCCCEEEEEEecC
Confidence            578899988888999998765555555    3455554443210            012688899998887 56654  4


Q ss_pred             CCCEEEEEe--CCcc-eEEecC-CCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCe-EEEec
Q 024317          123 SNHVIRKIT--NLGV-TTIAGG-GSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPED-CSKSS  197 (269)
Q Consensus       123 ~n~~I~~~~--~~g~-~~~~g~-~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~-~~~~~  197 (269)
                      .+..|..+.  .++. ..+... ................-..|++++++|++..|||+|.+.++|++++.+... +....
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~  184 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence            556665543  3332 111110 000000000000011124689999999988899999999999998754332 22211


Q ss_pred             c-cCccCCCcccceeeeeccceeeEEEecCC-cEEEEc-CCCCc
Q 024317          198 Q-SGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR-HTGRL  238 (269)
Q Consensus       198 ~-~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad-~~g~~  238 (269)
                      . .....|           ..|.+++++++| .+||+. .++.+
T Consensus       185 ~~~~~~~g-----------~gPr~i~f~pdg~~~yv~~e~~~~V  217 (365)
T d1jofa_         185 SVDAPDPG-----------DHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             EEECSSTT-----------CCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeecCCC-----------CceEEEEECCCCceEEEeccCCCEE
Confidence            1 101111           569999999999 578887 34444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.41  E-value=2.7e-06  Score=70.78  Aligned_cols=105  Identities=7%  Similarity=-0.018  Sum_probs=71.3

Q ss_pred             eEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEE
Q 024317           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVI  127 (269)
Q Consensus        49 giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I  127 (269)
                      |+|++ .+++.+++-...+.|..+|+   .++++.......            .-..|.+++++++|. +||++..+++|
T Consensus         1 g~a~~-~~~~~l~~~~~~~~v~v~D~---~t~~~~~t~~~~------------~~~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           1 GPALK-AGHEYMIVTNYPNNLHVVDV---ASDTVYKSCVMP------------DKFGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEET---TTTEEEEEEECS------------SCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             CccCC-CCCcEEEEEcCCCEEEEEEC---CCCCEEEEEEcC------------CCCCcceEEECCCCCEEEEEECCCCcE
Confidence            45675 46777777667789999996   355654432110            013689999999998 89999999999


Q ss_pred             EEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC
Q 024317          128 RKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       128 ~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      .++|....   .++......          ......|.++++++++..+||++..
T Consensus        65 ~~~d~~t~~~~~~~~~~~~~----------~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLSSVP----------GEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             EEEETTTTEEEEEEESCCST----------TEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEeCccCeeeeeecccccc----------cccCCceEEEEEecCCCEEEEEecC
Confidence            99996543   222211110          1224578999999998889998753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.40  E-value=1.6e-05  Score=68.42  Aligned_cols=162  Identities=9%  Similarity=0.037  Sum_probs=95.9

Q ss_pred             CCCCcceEEEecCCCeEEEEeCC------------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           43 LEINPHSVIDRPGSSDLIVLDSS------------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        43 ~~~~P~giav~~~~g~lyV~D~~------------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      ....|++|+++ .+|.+|++...            .++|+.+|+. +.+.....+.-.+.      .+.... -.|.||.
T Consensus        33 ~~~G~EDi~~~-~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~-~~~~~~~~l~~~~~------~~~~~~-f~PhGi~  103 (340)
T d1v04a_          33 IDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLN-EKEPAVSELEIIGN------TLDISS-FNPHGIS  103 (340)
T ss_dssp             CCSCCCEEEEC-TTSEEEEEECCCC--------CCCCEEEEEETT-SSSCCEEECEEECS------SSCGGG-CCEEEEE
T ss_pred             CCCCcceEEEC-CCCcEEEEecCccCCCCCCCCCCCCeEEEEecC-CCCCcceEEEecCC------CCCCcc-eecccee
Confidence            34579999996 48888888532            4788888874 23333333221110      011122 3699987


Q ss_pred             E--cCCCC--EEEEeC--CCCEEEEEe--CCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC--
Q 024317          111 V--DMKGN--IYVADK--SNHVIRKIT--NLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG--  179 (269)
Q Consensus       111 v--d~~G~--lyVaD~--~n~~I~~~~--~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~--  179 (269)
                      +  +.+|.  |||.+-  .+.+|-.|+  .++. .++.+.-.           ...+..|++|++..+ +.+|+++..  
T Consensus       104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~-----------~~~~~~pNDv~~~~~-g~fy~Tnd~~~  171 (340)
T d1v04a_         104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-----------HKLLPSVNDIVAVGP-EHFYATNDHYF  171 (340)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-----------CTTCSSEEEEEEEET-TEEEEEESCSC
T ss_pred             EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC-----------CccccCccceEEecC-CCEEEecCccC
Confidence            6  45564  888874  455665554  5554 44443211           123788999999987 899999742  


Q ss_pred             ---------------CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcC-CCCccccc
Q 024317          180 ---------------NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRH-TGRLDPPL  242 (269)
Q Consensus       180 ---------------n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~-~g~~~~~~  242 (269)
                                     .+.|+.++.  +...               ...-.+..|.||++++++ .+||++. .++++.+.
T Consensus       172 ~~~~~~~~e~~~~~~~g~v~~~~~--~~~~---------------~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~  234 (340)
T d1v04a_         172 IDPYLKSWEMHLGLAWSFVTYYSP--NDVR---------------VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYE  234 (340)
T ss_dssp             CSHHHHHHHHHTTCCCEEEEEECS--SCEE---------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             cChhhhhhhHhhcCCceeEEEEcC--CceE---------------EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEE
Confidence                           122333322  1111               111145789999999998 8999994 45555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=5e-05  Score=66.91  Aligned_cols=156  Identities=6%  Similarity=-0.061  Sum_probs=98.6

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc----CCCC-EEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGN-IYV  119 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd----~~G~-lyV  119 (269)
                      ..|++++++|++..+|+++. .+.|.++|+.. .+.+....+.              ....|.++++.    ++|. ||+
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t-~~~~~~~~i~--------------~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM-KEPTTVAEIK--------------IGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCCEEEEEE--------------CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeC-CCceEEEEEe--------------cCCCCCCeEEecccCCCCCEEEE
Confidence            36999999997788999875 46899998641 2222222111              12356677664    4787 899


Q ss_pred             EeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEe
Q 024317          120 ADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       120 aD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      +....+.|..+|....   ..+.+.......     .....-..+..|++++++..+||+-...+.|+.++.........
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-----QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTTT-----CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCccccc-----eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE
Confidence            9999999999996543   333322111000     00011234567888998778899999999999998765432221


Q ss_pred             cccCccCCCcccceeeeeccceeeEEEecCCc-EEEEcC
Q 024317          197 SQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIRH  234 (269)
Q Consensus       197 ~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad~  234 (269)
                      ...  ..+           ..|.+++++++|+ +|++..
T Consensus       201 ~~i--~~g-----------~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         201 TEI--SAE-----------RFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EEE--ECC-----------SSEEEEEECTTSCEEEEEEG
T ss_pred             EEE--ccc-----------CccccceECCCCCEEEEecc
Confidence            111  011           4588999999996 677763

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.20  E-value=1.9e-05  Score=70.59  Aligned_cols=84  Identities=12%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             CceEEEEe-------CC-CCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EE
Q 024317          160 NDFELTFV-------PH-ICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PY  230 (269)
Q Consensus       160 ~P~gia~~-------~~-~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-ly  230 (269)
                      .|+++++=       ++ ++.|+|++...++|.++..+..........-         .......+|.+|++++||. ||
T Consensus       350 apsg~~fY~g~~~~fp~~~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~---------~~~~~~~R~rdv~~gpDGs~ly  420 (450)
T d1crua_         350 APSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAV---------PMFKSNNRYRDVIASPDGNVLY  420 (450)
T ss_dssp             CBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEE---------EESCCSSCEEEEEECTTSSCEE
T ss_pred             cCccceEecCCcccCcccCCCEEEEECcCCEEEEEEEcCCCceeeEEEE---------eccCCCCCceEEEECCCCCEEE
Confidence            46777651       11 3789999999999998887654321111100         0000226799999999996 79


Q ss_pred             EEc-CCCCcccccccccccccCC
Q 024317          231 IIR-HTGRLDPPLQHDMEALPNQ  252 (269)
Q Consensus       231 Vad-~~g~~~~~~~~~~~~~~~~  252 (269)
                      |++ ..|++++.+......+++|
T Consensus       421 v~~d~~G~i~r~~~~~~~~~~~p  443 (450)
T d1crua_         421 VLTDTAGNVQKDDGSVTNTLENP  443 (450)
T ss_dssp             EEECSSCCEECTTSCEECCCSST
T ss_pred             EEECCCCCEecCCCceEEEeCCC
Confidence            988 5799998886666655555

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.02  E-value=2e-05  Score=65.21  Aligned_cols=103  Identities=11%  Similarity=-0.002  Sum_probs=71.9

Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          108 SFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       108 giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      |+++.++|+++++-...+.|.++|.+..   .++.-..               -..|.+|+++|++..+||+...+++|.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---------------~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------------KFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---------------CCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---------------CCCcceEEECCCCCEEEEEECCCCcEE
Confidence            4567778887776666789999996543   2221110               135899999999778999999999999


Q ss_pred             EEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEc
Q 024317          185 QINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIR  233 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad  233 (269)
                      .++.................        .....|.+++++++| .+||+.
T Consensus        66 ~~d~~t~~~~~~~~~~~~~~--------~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSSVPG--------EVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             EEETTTTEEEEEEESCCSTT--------EEEECSSCEEECTTSSEEEEEE
T ss_pred             EEeCccCeeeeeeccccccc--------ccCCceEEEEEecCCCEEEEEe
Confidence            99998876654322211111        133568999999999 688886

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.01  E-value=4.3e-05  Score=67.88  Aligned_cols=106  Identities=10%  Similarity=-0.005  Sum_probs=69.9

Q ss_pred             CcceEEE--ecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeC
Q 024317           46 NPHSVID--RPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (269)
Q Consensus        46 ~P~giav--~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~  122 (269)
                      +|.....  ++++..+||+|..++||.++|+   .+++...++.-.            ....|+++++.++|+ +||+..
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl---~t~k~~~ii~iP------------~g~gphgi~~spdg~t~YV~~~  135 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRL---DIMKTDKITHIP------------NVQAIHGLRLQKVPKTNYVFCN  135 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEET---TTTEEEEEEECT------------TCCCEEEEEECCSSBCCEEEEE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEEC---CCCcEeeEEecC------------CCCCccceEEeccCCEEEEEec
Confidence            4655443  2446689999999999999996   455554443211            134899999999998 799876


Q ss_pred             CCCEEE------------------EEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          123 SNHVIR------------------KITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       123 ~n~~I~------------------~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ..+.+-                  .+|....   ..+.-                 -..|.+++++++++.+|++....+
T Consensus       136 ~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-----------------~~~p~~v~~spdGk~a~vt~~nse  198 (441)
T d1qnia2         136 AEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-----------------DGNLDNTDADYTGKYATSTCYNSE  198 (441)
T ss_dssp             ECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-----------------SSCCCCEEECSSSSEEEEEESCTT
T ss_pred             cCCcccccCcccccccccccceEEeecCccceeeEEEec-----------------CCCccceEECCCCCEEEEEecCCC
Confidence            555542                  2333322   11110                 135889999999889999987654


Q ss_pred             eE
Q 024317          182 LI  183 (269)
Q Consensus       182 ~I  183 (269)
                      .+
T Consensus       199 ~~  200 (441)
T d1qnia2         199 RA  200 (441)
T ss_dssp             CC
T ss_pred             ce
Confidence            43

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.90  E-value=0.00034  Score=61.33  Aligned_cols=107  Identities=10%  Similarity=-0.047  Sum_probs=74.8

Q ss_pred             CeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCCCCEEEEEeCC-c
Q 024317           57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNL-G  134 (269)
Q Consensus        57 g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~n~~I~~~~~~-g  134 (269)
                      +.++|+....+.|..+|.   .++++......|              ..|.+++++++|+ +|++.. .+.|++++.+ +
T Consensus        32 ~~~~v~~~d~g~v~v~D~---~t~~v~~~~~~g--------------~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~   93 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDG---STYEIKTVLDTG--------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMK   93 (432)
T ss_dssp             GEEEEEETTTTEEEEEET---TTCCEEEEEECS--------------SCEEEEEECTTSCEEEEEET-TSEEEEEETTSS
T ss_pred             cEEEEEEcCCCEEEEEEC---CCCcEEEEEeCC--------------CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCC
Confidence            345799999999999984   566665554332              2689999999999 888875 4689999853 2


Q ss_pred             c-eEEecCCCCCCCCCCCccccccccCceEEEEe----CCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          135 V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFV----PHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       135 ~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~----~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      . ......              .....|.+++++    |++..|||+....+.|+.++........
T Consensus        94 ~~~~~~~i--------------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          94 EPTTVAEI--------------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             SCCEEEEE--------------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             CceEEEEE--------------ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence            2 222111              113456777665    4656799999999999999988765544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.86  E-value=0.001  Score=57.57  Aligned_cols=165  Identities=8%  Similarity=-0.036  Sum_probs=96.4

Q ss_pred             CcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEE
Q 024317           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (269)
Q Consensus        31 g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gia  110 (269)
                      ++.+.++..+    ..|++|+++|++..+|+++. .+.|.++|+. +..........              ....|.+++
T Consensus        52 ~~~~~~l~~g----~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~-t~~~~~~~~i~--------------~~~~~~~~~  111 (426)
T d1hzua2          52 KKIVKVIDTG----YAVHISRMSASGRYLLVIGR-DARIDMIDLW-AKEPTKVAEIK--------------IGIEARSVE  111 (426)
T ss_dssp             CSEEEEEECC----SSEEEEEECTTSCEEEEEET-TSEEEEEETT-SSSCEEEEEEE--------------CCSEEEEEE
T ss_pred             CcEEEEEeCC----CCeeEEEECCCCCEEEEEeC-CCCEEEEEcc-CCceeEEEEEe--------------CCCCCcceE
Confidence            4455554332    46999999987778888875 4688999863 11222211111              123456666


Q ss_pred             Ec----CCCC-EEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          111 VD----MKGN-IYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       111 vd----~~G~-lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ++    ++|+ +|++....+.+..++....   ..+.+.........     -..-..+..++.++++..++++..++++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~s~d~~~~~~~~~~~~~  186 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT-----YHPEPRVAAIIASHEHPEFIVNVKETGK  186 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC-----EESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcccee-----ecCCCceeEEEECCCCCEEEEecCCCCe
Confidence            65    4787 7899888899999986543   23322211100000     0001234567778887788999998888


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCc-EEEEc
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR-PYIIR  233 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~-lyVad  233 (269)
                      +..+.............  +           .-..|.+++++++|+ +|++.
T Consensus       187 i~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~g~~~~~a~  225 (426)
T d1hzua2         187 VLLVNYKDIDNLTVTSI--G-----------AAPFLADGGWDSSHRYFMTAA  225 (426)
T ss_dssp             EEEEECSSSSSCEEEEE--E-----------CCSSEEEEEECTTSCEEEEEE
T ss_pred             EEEEEeccccceeeEEe--c-----------cCCccEeeeECCCCcEEEeee
Confidence            88877554321111100  0           115588999999995 55554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.76  E-value=0.0011  Score=53.86  Aligned_cols=131  Identities=6%  Similarity=-0.044  Sum_probs=80.9

Q ss_pred             CCcEEEEEecCccCCCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceE
Q 024317           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (269)
Q Consensus        30 ~g~~~~~~~~g~~~~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~gi  109 (269)
                      .+..+..+. .......|.+|+++|++..+||+...++.|.+||+   .+|+.........        .......|.++
T Consensus        20 s~~~~~~i~-~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~---~t~~~~~~~~~~~--------~~~~~~~~~~v   87 (337)
T d1pbyb_          20 KMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGRIDLST--------PEERVKSLFGA   87 (337)
T ss_dssp             TTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEEEECCB--------TTEEEECTTCE
T ss_pred             CCeEEEEEE-CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEEEecCC--------CcccccceeeE
Confidence            344444432 22234579999998766678999999999999995   4566554332211        11224478899


Q ss_pred             EEcCCCC-EEEEeC-----------CCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEE
Q 024317          110 AVDMKGN-IYVADK-----------SNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLI  175 (269)
Q Consensus       110 avd~~G~-lyVaD~-----------~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyV  175 (269)
                      +++++|. +|++..           ...++..++....  .....                .-..|.++++++++..+|+
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----------------~~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----------------APRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----------------CCSSCCCEEECTTSSCEEE
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc----------------ccCCceEEEEcCCCCEEEE
Confidence            9999888 777764           2345555554332  11111                1245789999999778888


Q ss_pred             EECCCCeEEEEECCCC
Q 024317          176 SDHGNQLIRQINLKPE  191 (269)
Q Consensus       176 aD~~n~~I~~~~~~~~  191 (269)
                      ++.   .+..++....
T Consensus       152 ~~~---~~~~~d~~~~  164 (337)
T d1pbyb_         152 LGR---DLHVMDPEAG  164 (337)
T ss_dssp             ESS---SEEEEETTTT
T ss_pred             EcC---CcceeeeecC
Confidence            753   3455555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.75  E-value=0.0013  Score=54.88  Aligned_cols=119  Identities=8%  Similarity=0.001  Sum_probs=73.6

Q ss_pred             cceEEEecCCCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEe
Q 024317           47 PHSVIDRPGSSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD  121 (269)
                      ...++++|+..++||++..    ..+|+.+|.   .+|++......+               .+.++++.++|. ||++.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~---~tg~~~~~~~~~---------------~~~~~a~SpDG~~l~va~   84 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDA---GSGSILGHVNGG---------------FLPNPVAAHSGSEFALAS   84 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEEC---CCCCEEEEEeCC---------------CCccEEEcCCCCEEEEEe
Confidence            4667777888889998653    357888873   566655443221               233799999998 88887


Q ss_pred             CC---------CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEEC
Q 024317          122 KS---------NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINL  188 (269)
Q Consensus       122 ~~---------n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~  188 (269)
                      ..         .+.|.++|....   ..+.....         ........|.++++++++..+||.... .+.+..++.
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  155 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA---------PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCc---------ceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeec
Confidence            53         356777775433   22211110         111234568899999997888887643 445666665


Q ss_pred             CCCe
Q 024317          189 KPED  192 (269)
Q Consensus       189 ~~~~  192 (269)
                      ....
T Consensus       156 ~~~~  159 (373)
T d2madh_         156 GGSS  159 (373)
T ss_pred             cCCe
Confidence            5443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.71  E-value=0.0011  Score=54.76  Aligned_cols=116  Identities=14%  Similarity=0.143  Sum_probs=74.6

Q ss_pred             EecCCCeEEEEeCC----CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC---
Q 024317           52 DRPGSSDLIVLDSS----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS---  123 (269)
Q Consensus        52 v~~~~g~lyV~D~~----~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~---  123 (269)
                      ..|+..++||++..    .+.|+.+|.   .+|++......|              ..| +++++++|+ |||++..   
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~---~tg~~~~~~~~g--------------~~~-~~a~SpDg~~l~v~~~~~~~   70 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDG---EAGRVIGMIDGG--------------FLP-NPVVADDGSFIAHASTVFSR   70 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEET---TTTEEEEEEEEC--------------SSC-EEEECTTSSCEEEEEEEEEE
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEEC---CCCcEEEEEECC--------------CCC-ceEEcCCCCEEEEEeCCCcc
Confidence            34667889999853    456999984   466654433221              133 699999998 9998742   


Q ss_pred             ------CCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECC-CCeEEEEECCCCeE
Q 024317          124 ------NHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHG-NQLIRQINLKPEDC  193 (269)
Q Consensus       124 ------n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~-n~~I~~~~~~~~~~  193 (269)
                            .+.|+++|... +  ..+......         .......|.++++++++..+|+++.. ...+..++......
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTADIELPDAP---------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCC---------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             ccccCCCCEEEEEECCCCCEEEEEecCCcc---------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence                  35788888644 3  222221110         01224578999999998899999865 34677777776654


Q ss_pred             E
Q 024317          194 S  194 (269)
Q Consensus       194 ~  194 (269)
                      .
T Consensus       142 ~  142 (355)
T d2bbkh_         142 K  142 (355)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.0017  Score=54.65  Aligned_cols=176  Identities=14%  Similarity=0.016  Sum_probs=92.1

Q ss_pred             CCCcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcC-Cc------------ccCCCCCc------------
Q 024317           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GV------------QGYSDGEP------------   98 (269)
Q Consensus        44 ~~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~-g~------------~g~~dg~~------------   98 (269)
                      ...|.++++++++..+||++...+.|..+|+.   ++++...... +.            ....||..            
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~  199 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVP---GASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEET---TTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECC---CCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceee
Confidence            45689999998888999999888999999862   3333322211 00            00011110            


Q ss_pred             -------ccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCC
Q 024317           99 -------GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPH  169 (269)
Q Consensus        99 -------~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~  169 (269)
                             ....-..+..+..++++.++..+.  ++++.++.++. ..+.......   ... ......-..+..++++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~a~~~~  274 (368)
T d1mdah_         200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGN---ESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSS---CTHHHHTTEEECSSSCEEEETT
T ss_pred             eeeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceEEEeecccc---cceeeeeeecCCCceeEEEcCC
Confidence                   001112234455555555444442  34444443332 2221111000   000 000011123567899999


Q ss_pred             CCEEEEEECCC--------CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCc--EEEEc-CCCCc
Q 024317          170 ICALLISDHGN--------QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVAR--PYIIR-HTGRL  238 (269)
Q Consensus       170 ~g~LyVaD~~n--------~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~--lyVad-~~g~~  238 (269)
                      .+.+||+....        .+|+.++............               -..|.++++.+||+  +|++. .++.+
T Consensus       275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---------------~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------------GHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------------EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC---------------CCceeEEEECCCCCEEEEEEeCCCCeE
Confidence            88999885432        4588888766544321111               13478899999995  78887 34555


Q ss_pred             cccc
Q 024317          239 DPPL  242 (269)
Q Consensus       239 ~~~~  242 (269)
                      ...+
T Consensus       340 ~v~D  343 (368)
T d1mdah_         340 DIYD  343 (368)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.57  E-value=0.0013  Score=58.02  Aligned_cols=158  Identities=12%  Similarity=0.009  Sum_probs=88.5

Q ss_pred             eEEEEeCCCCEEEEEecCCCCCccEEEEEcC----CcccCCCC-----------CcccccCCCCceEEEc--CCCC-EEE
Q 024317           58 DLIVLDSSRSAFYTLSFPLSEESVVKRLAGD----GVQGYSDG-----------EPGSARFDKPKSFAVD--MKGN-IYV  119 (269)
Q Consensus        58 ~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~----g~~g~~dg-----------~~~~~~~~~P~giavd--~~G~-lyV  119 (269)
                      ..|++....+.|..+++   +++++...+.-    +..+|.-.           .....-..+|.....+  ++|. |||
T Consensus        12 y~f~Sgg~sG~V~V~dl---pS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV   88 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGV---PSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI   88 (441)
T ss_dssp             EEEEECBTTCCEEEEEE---TTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred             EEEEeCCCCCcEEEEeC---CCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence            34666666788888875   46665554432    22233200           0111223357665554  6787 999


Q ss_pred             EeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE------CCCC
Q 024317          120 ADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN------LKPE  191 (269)
Q Consensus       120 aD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~------~~~~  191 (269)
                      +|..++||.++|.+..  ..+...+              ....|+|+++++++..+||+....+.+-..+      .+..
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP--------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIP--------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECT--------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecC--------------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            9999999999997643  3333221              1457999999998778899987666553210      0000


Q ss_pred             eEEEecccCccCCCcccceeeeeccceeeEEEecCC-cEEEEcCC
Q 024317          192 DCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVA-RPYIIRHT  235 (269)
Q Consensus       192 ~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g-~lyVad~~  235 (269)
                      ........  .......|.. ..-..|.+++++++| .+|++.++
T Consensus       155 ~~~~~~iD--~~t~~v~~qI-~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         155 YTMFTAID--AETMDVAWQV-IVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEEEEE--TTTCSEEEEE-EESSCCCCEEECSSSSEEEEEESC
T ss_pred             cceEEeec--CccceeeEEE-ecCCCccceEECCCCCEEEEEecC
Confidence            10000000  0001111111 012568999999999 68888754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.52  E-value=0.013  Score=48.55  Aligned_cols=124  Identities=6%  Similarity=-0.126  Sum_probs=79.0

Q ss_pred             CcceEEEecCCCeEEEEeCC---------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSS---------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~---------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~  116 (269)
                      .+.+++++|++..+|++...         .+.|..+|.   .+++.......+.      .........|.++++.++|.
T Consensus        67 ~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~---~t~~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          67 FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP---VTFLPIADIELPD------APRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEEC---CCCcEEEEEecCC------cceeEeccCCCcEEEEeCCC
Confidence            34479999888889998753         356777774   4555443332211      11122345788899988877


Q ss_pred             -EEEEeCC-CCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Q 024317          117 -IYVADKS-NHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCS  194 (269)
Q Consensus       117 -lyVaD~~-n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~  194 (269)
                       +||.... .+.+..++.......                 .....|.++++++++..+|++...++.+..++.......
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDD-----------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEE-----------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence             6776643 345555554332111                 124567889999987789999999999999988776554


Q ss_pred             E
Q 024317          195 K  195 (269)
Q Consensus       195 ~  195 (269)
                      .
T Consensus       201 ~  201 (373)
T d2madh_         201 A  201 (373)
T ss_pred             E
Confidence            4

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.003  Score=54.43  Aligned_cols=118  Identities=8%  Similarity=-0.028  Sum_probs=78.5

Q ss_pred             CcceEEEecC-CCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EEEEeCC
Q 024317           46 NPHSVIDRPG-SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (269)
Q Consensus        46 ~P~giav~~~-~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-lyVaD~~  123 (269)
                      .|..+.++.+ .+.++|+..++++|..+|+   .++++......+              ..|.+|+++++|+ +|++.. 
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~---~t~~~~~~l~~g--------------~~~~~vafSPDGk~l~~~~~-   81 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDG---DSKKIVKVIDTG--------------YAVHISRMSASGRYLLVIGR-   81 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEET---TTCSEEEEEECC--------------SSEEEEEECTTSCEEEEEET-
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEEC---CCCcEEEEEeCC--------------CCeeEEEECCCCCEEEEEeC-
Confidence            4555554322 3456798999999999996   456654433222              2689999999999 788875 


Q ss_pred             CCEEEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEe----CCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          124 NHVIRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFV----PHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       124 n~~I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~----~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      .+.|+++|.+. + ....-.              .....|.+++++    |++..||++....+.++.++........
T Consensus        82 d~~v~vwd~~t~~~~~~~~i--------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~  145 (426)
T d1hzua2          82 DARIDMIDLWAKEPTKVAEI--------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  145 (426)
T ss_dssp             TSEEEEEETTSSSCEEEEEE--------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEccCCceeEEEEE--------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE
Confidence            56899998653 3 222110              012345666655    5666899999888999999988765443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.35  E-value=0.0029  Score=53.17  Aligned_cols=80  Identities=9%  Similarity=0.018  Sum_probs=56.2

Q ss_pred             eEEEcCCCC-EEEEeCC---------CCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEE
Q 024317          108 SFAVDMKGN-IYVADKS---------NHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALL  174 (269)
Q Consensus       108 giavd~~G~-lyVaD~~---------n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~Ly  174 (269)
                      .+++.++|. ||++...         .+.|+++|....   ..+.......         ......|.++++++++..||
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~---------~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR---------FSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS---------CCBSCCTTSEEECTTSSCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce---------ecccCCccceEECCCCCEEE
Confidence            699999998 9998742         356999996543   2222111000         01235688999999988999


Q ss_pred             EEECCCCeEEEEECCCCeEEEe
Q 024317          175 ISDHGNQLIRQINLKPEDCSKS  196 (269)
Q Consensus       175 VaD~~n~~I~~~~~~~~~~~~~  196 (269)
                      |++...+.|+.++.........
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEE
T ss_pred             EEeCCCCeEEEEECCCCcEeEE
Confidence            9998889999999888766553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.04  E-value=0.052  Score=43.33  Aligned_cols=140  Identities=9%  Similarity=-0.020  Sum_probs=81.4

Q ss_pred             CCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEEEEEeCCc
Q 024317           55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLG  134 (269)
Q Consensus        55 ~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I~~~~~~g  134 (269)
                      ..+.++++-...+.|..+|+   .+++.......             .-.....++++++|+++++=...+.|+.++...
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~---~~~~~~~~~~~-------------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDV---REGMCRQTFTG-------------HESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEET---TTTEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccceeEEeecCceEEEEEC---CCCcEEEEEeC-------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence            45666666666777777774   34443332210             112346799999999777666678888888654


Q ss_pred             c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEecccCccCCCcccceee
Q 024317          135 V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLV  212 (269)
Q Consensus       135 ~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  212 (269)
                      .  .......             ........++++++ +.++++-..++.|+.++.........-..             
T Consensus       258 ~~~~~~~~~~-------------~~~~~i~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------------  310 (340)
T d1tbga_         258 DQELMTYSHD-------------NIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAG-------------  310 (340)
T ss_dssp             TEEEEEECCT-------------TCCSCEEEEEECSS-SCEEEEEETTSCEEEEETTTCCEEEEECC-------------
T ss_pred             cccccccccc-------------cccCceEEEEECCC-CCEEEEEECCCEEEEEECCCCcEEEEEcC-------------
Confidence            4  2211111             01233468899987 55555555567899999765443322111             


Q ss_pred             eeccceeeEEEecCCcEEE-EcCCCCc
Q 024317          213 SVLSCLVSLVIGFVARPYI-IRHTGRL  238 (269)
Q Consensus       213 ~~l~~p~gia~d~~g~lyV-ad~~g~~  238 (269)
                       .-.....|++.++|.+.+ +..+|.+
T Consensus       311 -H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         311 -HDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             -CSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             -CCCCEEEEEEeCCCCEEEEEccCCEE
Confidence             112356788888885544 3455544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.92  E-value=0.029  Score=45.71  Aligned_cols=124  Identities=6%  Similarity=-0.138  Sum_probs=75.1

Q ss_pred             eEEEecCCCeEEEEeCC---------CCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EE
Q 024317           49 SVIDRPGSSDLIVLDSS---------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IY  118 (269)
Q Consensus        49 giav~~~~g~lyV~D~~---------~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-ly  118 (269)
                      +++++|++..|||++..         .+.|.++|+   .+++.........      .........|.+++++++|. +|
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~---~t~~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~~~  121 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP---VTLLPTADIELPD------APRFLVGTYPWMTSLTPDGKTLL  121 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETT------CCCCCBSCCGGGEEECTTSSEEE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC---CCCCEEEEEecCC------cceeecCCCCceEEEecCCCeeE
Confidence            79999877889998742         467888884   4566554332211      00112345789999999888 88


Q ss_pred             EEeCC-CCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCC
Q 024317          119 VADKS-NHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       119 VaD~~-n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      |++.. ...+..++... .  ..+......         .......+..+++++++..+++.....+.+..++...
T Consensus       122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCY---------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEECSSSCEEEEEETTTTEEEEEEECCSEE---------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             EecCCCCceeeeeecCCCcEeeEEecCCcc---------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            88854 45666677543 2  222211100         0011234566888888778888877777666665433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.87  E-value=0.038  Score=46.83  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=90.5

Q ss_pred             CCCcceEEE--ecCCCeEE--EEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcC-CCCEE
Q 024317           44 EINPHSVID--RPGSSDLI--VLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIY  118 (269)
Q Consensus        44 ~~~P~giav--~~~~g~ly--V~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~-~G~ly  118 (269)
                      +..|+|+|+  ++..+.+|  +++. .+++..+.+....++.+....=   ..+       ..-..+.|+++|. ++.||
T Consensus       127 ~~~vYGlc~y~~~~~g~~~afv~~k-~G~v~q~~l~~~~~g~v~~~lv---r~f-------~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         127 IDEVYGFSLYHSQKTGKYYAMVTGK-EGEFEQYELNADKNGYISGKKV---RAF-------KMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             SSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSSEEEEEE---EEE-------ECSSCEEEEEEETTTTEEE
T ss_pred             cCcceEEEEEecCCCCeEEEEEEcC-CceEEEEEEEcCCCCceeeEee---ecc-------CCCCccceEEEeCCCCcEE
Confidence            456899998  45566554  4443 4566666543244554322110   000       0113578999997 56699


Q ss_pred             EEeCCCCEEEEEeCC--c-c--eEEecCCCCCCCCCCCccccccccCceEEEEeC---CCCEEEEEECCCCeEEEEECCC
Q 024317          119 VADKSNHVIRKITNL--G-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVP---HICALLISDHGNQLIRQINLKP  190 (269)
Q Consensus       119 VaD~~n~~I~~~~~~--g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~---~~g~LyVaD~~n~~I~~~~~~~  190 (269)
                      |++- +..|++++.+  . .  ..+.......           -..-|.||++-.   ..|.|++++.++++...|+..+
T Consensus       196 isEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~-----------l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         196 IAEE-DEAIWKFSAEPDGGSNGTVIDRADGRH-----------LTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEET-TTEEEEEESSTTSCSCCEEEEECSSSS-----------CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EecC-ccceEEEEeccCCCccceeeecccCcc-----------ccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9987 5689999743  2 2  2222211111           124588999753   2479999999999999999876


Q ss_pred             C--eEEEeccc--Ccc---CCCcccceeeeec--cceeeEEEecCC
Q 024317          191 E--DCSKSSQS--GSA---LGAVSVWVLVSVL--SCLVSLVIGFVA  227 (269)
Q Consensus       191 ~--~~~~~~~~--g~~---~g~~~~~~~~~~l--~~p~gia~d~~g  227 (269)
                      .  .+..|...  ...   .........+..|  ..|.||.+-.||
T Consensus       264 ~~~~~g~F~i~~~~~iDgvs~TDGi~v~~~~lg~~fp~Gl~VvqDg  309 (353)
T d1h6la_         264 QNKYVADFQITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNG  309 (353)
T ss_dssp             TCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEES
T ss_pred             CccccceEEEecCCCcCccccCchheEEcccCCCCCCCeeEEEEcC
Confidence            3  44443211  111   1122222222222  467777776666

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.088  Score=42.85  Aligned_cols=102  Identities=11%  Similarity=-0.010  Sum_probs=63.3

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      ....++++++++++++=..++.|+.++....  ......                -...+.++++++ +.++++-..++.
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------------~~~i~~v~~s~~-g~~l~s~s~Dg~  288 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH----------------ESCVLSLKFAYC-GKWFVSTGKDNL  288 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC----------------SSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             ceEEEEEcccccccceecccccccccccccccccccccc----------------ccccceEEECCC-CCEEEEEeCCCe
Confidence            3467889898886666555778888886544  222211                123578999998 555555555688


Q ss_pred             EEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCc
Q 024317          183 IRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRL  238 (269)
Q Consensus       183 I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~  238 (269)
                      |+.++............               -.....++++++|+..++ ..+|.+
T Consensus       289 i~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         289 LNAWRTPYGASIFQSKE---------------SSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             EEEEETTTCCEEEEEEC---------------SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEccC---------------CCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            99998776544332111               133567888888865444 355544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.67  E-value=0.027  Score=45.67  Aligned_cols=75  Identities=5%  Similarity=0.055  Sum_probs=48.6

Q ss_pred             CCceEEEcCCCC-EEE-EeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          105 KPKSFAVDMKGN-IYV-ADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       105 ~P~giavd~~G~-lyV-aD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ...++++.++|. |++ ++...+.|+.++.++.  ..+...                -.....++++|+ +..+++-...
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~----------------~~~v~~~~~spd-g~~l~~~~~~  106 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN----------------LGNVFAMGVDRN-GKFAVVANDR  106 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC----------------CCSEEEEEECTT-SSEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC----------------CceEEeeeeccc-ccccceeccc
Confidence            457899999997 444 4444456888886554  333221                234578999998 5444444556


Q ss_pred             CeEEEEECCCCeEEEe
Q 024317          181 QLIRQINLKPEDCSKS  196 (269)
Q Consensus       181 ~~I~~~~~~~~~~~~~  196 (269)
                      +.++.++.++......
T Consensus       107 ~~~~~~~~~~~~~~~~  122 (360)
T d1k32a3         107 FEIMTVDLETGKPTVI  122 (360)
T ss_dssp             SEEEEEETTTCCEEEE
T ss_pred             cccccccccccceeee
Confidence            7899999887665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.66  E-value=0.036  Score=48.20  Aligned_cols=106  Identities=6%  Similarity=-0.187  Sum_probs=61.7

Q ss_pred             CCCCcceEEEec---CCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCC-EE
Q 024317           43 LEINPHSVIDRP---GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IY  118 (269)
Q Consensus        43 ~~~~P~giav~~---~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~-ly  118 (269)
                      -..+| .+...+   ++..+||.|..|.||.++|++   .-+...++...            ....|+|+.....++ .|
T Consensus        84 D~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~---~fkt~kIi~iP------------n~~~~HG~r~~~~p~T~Y  147 (459)
T d1fwxa2          84 DLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCD---VMKCDAILEIP------------NAKGIHGLRPQKWPRSNY  147 (459)
T ss_dssp             CBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETT---TTEEEEEEECS------------SCCSEEEEEECCSSBCSE
T ss_pred             CcCCC-cccccCCccceeEEEEEcCCCceEEEEECc---ceeeeEEEecC------------CCCCCceeecccCCCeEE
Confidence            34467 455543   245799999999999999974   33333332111            134667777766555 66


Q ss_pred             EEeCCCC-------------------EEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317          119 VADKSNH-------------------VIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH  178 (269)
Q Consensus       119 VaD~~n~-------------------~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~  178 (269)
                      |......                   .+..+|.+.. ..+-=               ..-..|.+++++++++.+|++..
T Consensus       148 V~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV---------------~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         148 VFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV---------------LVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEE---------------EESSCCCCEEECSSSSEEEEEES
T ss_pred             EEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEe---------------eeCCChhccccCCCCCEEEEEec
Confidence            6653322                   2345554433 11100               00124678999999888899875


Q ss_pred             C
Q 024317          179 G  179 (269)
Q Consensus       179 ~  179 (269)
                      .
T Consensus       213 N  213 (459)
T d1fwxa2         213 N  213 (459)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.58  E-value=0.12  Score=41.47  Aligned_cols=117  Identities=9%  Similarity=0.020  Sum_probs=71.1

Q ss_pred             CcceEEEecCCCeEEEEeC-CCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~-~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....++++|++..|+++.. ..+.|+.+|.   ..|....+.+.              -.....++++++|...++-...
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~---~~~~~~~~~~~--------------~~~v~~~~~spdg~~l~~~~~~  106 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDY---RTGKAEKFEEN--------------LGNVFAMGVDRNGKFAVVANDR  106 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEET---TTCCEEECCCC--------------CCSEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEEC---CCCcEEEeeCC--------------CceEEeeeecccccccceeccc
Confidence            4678889875556655543 3356777764   45555554321              2345789999999977777778


Q ss_pred             CEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC---------CCCeEEEEECCCCeE
Q 024317          125 HVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH---------GNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~---------~n~~I~~~~~~~~~~  193 (269)
                      +.++.++.++.  .......               .....+++++|++..|.++..         ..+.++.++..+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         107 FEIMTVDLETGKPTVIERSR---------------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             SEEEEEETTTCCEEEEEECS---------------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             cccccccccccceeeeeecc---------------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence            88999887654  2222211               123457888988556655432         123466677666544


Q ss_pred             E
Q 024317          194 S  194 (269)
Q Consensus       194 ~  194 (269)
                      .
T Consensus       172 ~  172 (360)
T d1k32a3         172 F  172 (360)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.57  E-value=0.06  Score=43.83  Aligned_cols=147  Identities=10%  Similarity=0.000  Sum_probs=81.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCC-
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~-  123 (269)
                      .-..++++| +|++.++-...+.|+.+|+. ........ +.+.              -.....|++++++.++++-.. 
T Consensus        60 ~v~~~~~sp-~g~~latg~~dg~i~iwd~~-~~~~~~~~~~~~~--------------~~~v~~v~~s~d~~~l~~~~~~  123 (311)
T d1nr0a1          60 QTTVAKTSP-SGYYCASGDVHGNVRIWDTT-QTTHILKTTIPVF--------------SGPVKDISWDSESKRIAAVGEG  123 (311)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEESS-STTCCEEEEEECS--------------SSCEEEEEECTTSCEEEEEECC
T ss_pred             CEEEEEEeC-CCCeEeccccCceEeeeeee-ccccccccccccc--------------cCcccccccccccccccccccc
Confidence            346778876 56666666667888888763 11122222 2111              123467999999986655432 


Q ss_pred             -CCEEEEEeCCc-c--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEeccc
Q 024317          124 -NHVIRKITNLG-V--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSKSSQS  199 (269)
Q Consensus       124 -n~~I~~~~~~g-~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~~~~~  199 (269)
                       ...+.+++.+. .  .++.+.                -...+.++++|++..++++-...+.|+.++............
T Consensus       124 ~~~~~~v~~~~~~~~~~~l~~h----------------~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~  187 (311)
T d1nr0a1         124 RERFGHVFLFDTGTSNGNLTGQ----------------ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE  187 (311)
T ss_dssp             SSCSEEEEETTTCCBCBCCCCC----------------SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             cccccccccccccccccccccc----------------ccccccccccccceeeeccccccccccccccccccccccccc
Confidence             22344555332 1  222111                234578999988556677766678899999876554433221


Q ss_pred             CccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCc
Q 024317          200 GSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRL  238 (269)
Q Consensus       200 g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~  238 (269)
                                    .-.....++++++++++++ ..++.+
T Consensus       188 --------------~~~~i~~v~~~p~~~~l~~~~~d~~v  213 (311)
T d1nr0a1         188 --------------HTKFVHSVRYNPDGSLFASTGGDGTI  213 (311)
T ss_dssp             --------------CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             --------------ccccccccccCccccccccccccccc
Confidence                          0123456777777754443 334443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.19  Score=40.63  Aligned_cols=114  Identities=10%  Similarity=0.031  Sum_probs=66.9

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..+++.| +++.+++-...+.|..+|+. ...+++......             .-..-..+++++++.++++-.....|
T Consensus       101 ~~v~~s~-dg~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~d~~i  165 (337)
T d1gxra_         101 RSCKLLP-DGCTLIVGGEASTLSIWDLA-APTPRIKAELTS-------------SAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             EEEEECT-TSSEEEEEESSSEEEEEECC-CC--EEEEEEEC-------------SSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEEcC-CCCEEEEeeccccccccccc-cccccccccccc-------------cccccccccccccccccccccccccc
Confidence            5688875 55555555557888888763 223333222111             11123567788888877777677788


Q ss_pred             EEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          128 RKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       128 ~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ..++....   ....+.                -.....+++++++..++++. ..+.|+.++......
T Consensus       166 ~~~~~~~~~~~~~~~~~----------------~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~  217 (337)
T d1gxra_         166 AVWDLHNQTLVRQFQGH----------------TDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ  217 (337)
T ss_dssp             EEEETTTTEEEEEECCC----------------SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred             ccccccccccccccccc----------------cccccccccccccccccccc-cccccccccccccee
Confidence            88885443   222111                12356788888744555554 457888888776544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.27  E-value=0.057  Score=44.84  Aligned_cols=111  Identities=10%  Similarity=0.003  Sum_probs=65.6

Q ss_pred             CCc-ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE---EEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEE
Q 024317           45 INP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR---LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        45 ~~P-~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~---~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      ..| ..+++++ ++.++++-..++.|..+|+   ..++...   +.|.              -..-..|+++++++++++
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~---~~~~~~~~~~l~gH--------------~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEK---SGNKWVQVHELKEH--------------NGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEE---ETTEEEEEEEEECC--------------SSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEEC---CCCCEEEEEEecCC--------------CCCEEEEEECCCCCEEEE
Confidence            356 7899975 6666666667788988875   2343322   2221              123467999999996665


Q ss_pred             eCCCCEEEEEeCCcc--e-EEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEEC
Q 024317          121 DKSNHVIRKITNLGV--T-TIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINL  188 (269)
Q Consensus       121 D~~n~~I~~~~~~g~--~-~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~  188 (269)
                      =...+.|+.++.+..  . .+.-.+              .-....+++++|++..|+++. .++.|+.++.
T Consensus        69 ~s~D~~i~vWd~~~~~~~~~~~~~~--------------~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~  124 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWKPTLVILR--------------INRAARCVRWAPNEKKFAVGS-GSRVISICYF  124 (371)
T ss_dssp             EETTSCEEEEEEETTEEEEEEECCC--------------CSSCEEEEEECTTSSEEEEEE-TTSSEEEEEE
T ss_pred             EECCCeEEEEeeccccccccccccc--------------ccccccccccccccccceeec-ccCcceeeee
Confidence            545667888775432  2 221111              013467899999855555554 4555555543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.20  E-value=0.06  Score=42.90  Aligned_cols=110  Identities=9%  Similarity=0.057  Sum_probs=65.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~  125 (269)
                      ....|+++| ++.++++-...+.|..+++  .....+..+...            ........++++++|+++++-...+
T Consensus       228 ~i~~v~~~p-~~~~l~s~s~d~~i~~~~~--~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         228 DINAICFFP-NGNAFATGSDDATCRLFDL--RADQELMTYSHD------------NIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET--TTTEEEEEECCT------------TCCSCEEEEEECSSSCEEEEEETTS
T ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEee--cccccccccccc------------cccCceEEEEECCCCCEEEEEECCC
Confidence            346788865 5555555555677888875  222333332111            1112346789999999777766678


Q ss_pred             EEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEE
Q 024317          126 VIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQIN  187 (269)
Q Consensus       126 ~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~  187 (269)
                      .|+.+|. .+.  .++.+.                -...++|+++++ +.++++-...+.|+.++
T Consensus       293 ~i~iwd~~~~~~~~~~~~H----------------~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGH----------------DNRVSCLGVTDD-GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTTCCEEEEECCC----------------SSCEEEEEECTT-SSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCCcEEEEEcCC----------------CCCEEEEEEeCC-CCEEEEEccCCEEEEeC
Confidence            8999985 344  343332                123478999998 44444444456777764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.17  E-value=0.11  Score=41.01  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=45.1

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIR  184 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~  184 (269)
                      ....+++++++..+++-..+++|+.++......+.-....          ...-...++++++|+ +.++++-..++.|+
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~s~~-~~~l~sgs~dg~i~  249 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW----------TFHTAKVACVSWSPD-NVRLATGSLDNSVI  249 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC----------CCCSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----------ccccccccccccccc-ccceEEEcCCCEEE
Confidence            4577899998886666556778888885432111110000          001123578999998 55444444467899


Q ss_pred             EEECCCC
Q 024317          185 QINLKPE  191 (269)
Q Consensus       185 ~~~~~~~  191 (269)
                      .++.+..
T Consensus       250 iwd~~~~  256 (299)
T d1nr0a2         250 VWNMNKP  256 (299)
T ss_dssp             EEETTCT
T ss_pred             EEECCCC
Confidence            9987653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.94  E-value=0.18  Score=41.53  Aligned_cols=115  Identities=9%  Similarity=-0.074  Sum_probs=59.8

Q ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCc---cccccccCceEEEEeCCCCEEEEEECC
Q 024317          106 PKSFAVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGP---AQNASFSNDFELTFVPHICALLISDHG  179 (269)
Q Consensus       106 P~giavd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~---~~~~~l~~P~gia~~~~~g~LyVaD~~  179 (269)
                      ...++++++|.++++=...+.|+.++....   ....... .......+.   .....-....+++++|+ ++.+++-..
T Consensus       144 v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~  221 (371)
T d1k8kc_         144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP-WGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSH  221 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT-TBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEET
T ss_pred             cccccccccccceeccccCcEEEEEeeccCcccccccccc-ccccccceeeeeeccCccCcEEEEEeecc-ccccccccc
Confidence            467889999997776656778888875432   1100000 000000000   00111234578999998 444444445


Q ss_pred             CCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCC
Q 024317          180 NQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTG  236 (269)
Q Consensus       180 n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g  236 (269)
                      ++.|..++............   ..           .....+++.++|.+.++-+++
T Consensus       222 d~~i~iwd~~~~~~~~~~~~---~~-----------~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         222 DSTVCLADADKKMAVATLAS---ET-----------LPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             TTEEEEEEGGGTTEEEEEEC---SS-----------CCEEEEEEEETTEEEEEETTS
T ss_pred             CCcceEEeeecccceeeeec---cc-----------ccceeeeecCCCCEEEEEcCC
Confidence            78899998766544332211   00           123456677777665554443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.71  E-value=0.28  Score=38.48  Aligned_cols=74  Identities=7%  Similarity=0.010  Sum_probs=46.8

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCe
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQL  182 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~  182 (269)
                      .+..+++.++++++++-..++.|..++..+.  ..+....              .-.....+++++++..|++++ .++.
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~-~d~~  202 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--------------HPAEITSVAFSNNGAFLVATD-QSRK  202 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE--------------CSSCEEEEEECTTSSEEEEEE-TTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc--------------ccccccccccccccccccccc-cccc
Confidence            3466888889887766666788888885432  2221110              012457899999855555555 4678


Q ss_pred             EEEEECCCCeE
Q 024317          183 IRQINLKPEDC  193 (269)
Q Consensus       183 I~~~~~~~~~~  193 (269)
                      |+.++......
T Consensus       203 i~~~~~~~~~~  213 (299)
T d1nr0a2         203 VIPYSVANNFE  213 (299)
T ss_dssp             EEEEEGGGTTE
T ss_pred             ccccccccccc
Confidence            99998765433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.44  E-value=0.48  Score=38.06  Aligned_cols=124  Identities=18%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCE
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~  126 (269)
                      ...+++++.+..++++-...+.|..+|+   .+++.......             .-.....++++++++++++=...+.
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~---~~~~~~~~~~~-------------~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEG---PPFKFKSTFGE-------------HTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEET---TTBEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccceeeecccccccccccccc---ccccccccccc-------------ccccccccccCcccccccccccccc
Confidence            4667776644556676666677888874   34444443211             1123468999999997766555678


Q ss_pred             EEEEeCCc-c-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          127 IRKITNLG-V-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       127 I~~~~~~g-~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      |+.++... . ..........   .     .+.-...+.++++++ +..+++-...+.|+.++.+......
T Consensus       213 v~~~d~~~~~~~~~~~~~~~~---~-----~~h~~~V~~~~~s~~-~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         213 IVLYNGVDGTKTGVFEDDSLK---N-----VAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             EEEEETTTCCEEEECBCTTSS---S-----CSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccccc---c-----ccccccccccccCCC-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence            88888543 3 2222111000   0     000123468999998 4444454456789999988766544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.68  E-value=0.7  Score=38.68  Aligned_cols=78  Identities=12%  Similarity=0.109  Sum_probs=53.9

Q ss_pred             CCcceEEEecCCCeEEEEeCCCCEEEEEecCCCC--CccEEEEEcCCcccCCCCCcccccCCCCceEEEc----CCCCEE
Q 024317           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGNIY  118 (269)
Q Consensus        45 ~~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~--~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd----~~G~ly  118 (269)
                      ..++|+++|+..+.|||++. +..|++++.....  .+.+......+           .-..-|.||++=    .+|-|+
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~-----------~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGR-----------HLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSS-----------SCCSCEEEEEEEECGGGCEEEE
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCc-----------cccCCccccEEEEcCCCCeEEE
Confidence            35899999988899999987 5689999864221  22222211110           113468898863    256699


Q ss_pred             EEeCCCCEEEEEeCCc
Q 024317          119 VADKSNHVIRKITNLG  134 (269)
Q Consensus       119 VaD~~n~~I~~~~~~g  134 (269)
                      +++.++++..+|+..+
T Consensus       248 vSsQG~n~f~vydr~~  263 (353)
T d1h6la_         248 ASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999999765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.67  Score=35.55  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=67.0

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      .-..|+++| ++.++++-+..+.|..+|+   .+++. .++.+.              -.....+++++++.++++-...
T Consensus        19 ~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~---~~~~~~~~~~~h--------------~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          19 PVTRVIFHP-VFSVMVSASEDATIKVWDY---ETGDFERTLKGH--------------TDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CEEEEEECS-SSSEEEEEESSSCEEEEET---TTCCCCEEECCC--------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEEC---CCCCEEEEEeCC--------------CCcEEEEeeecccccccccccc
Confidence            347889975 5677777666788999985   34443 233211              1234678898899877776666


Q ss_pred             CEEEEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          125 HVIRKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       125 ~~I~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      ..+...+.... ....-..              .-.....+.+.+++..+ ++-..++.+..++......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~  135 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHG--------------HDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYC  135 (317)
T ss_dssp             SCCCEEETTSSCEEECCCC--------------CSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCE
T ss_pred             ccccccccccccccccccc--------------ccccceeeeccCCCceE-EeeccCcceeEeeccccee
Confidence            66666664433 2211110              12234567777774444 4444567788887765443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=1.2  Score=36.58  Aligned_cols=133  Identities=12%  Similarity=0.026  Sum_probs=74.2

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccE-EEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCC
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~-~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n  124 (269)
                      ....++++| ++ ++++-+..+.|+.+|+   .+++. ..+....        .....-.....+++.++|++.++=...
T Consensus       186 ~~~~v~~s~-dg-~lasgs~Dg~i~iwd~---~~~~~~~~~~~~~--------~l~~h~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         186 FATSVDISE-RG-LIATGFNNGTVQISEL---STLRPLYNFESQH--------SMINNSNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             CCCEEEECT-TS-EEEEECTTSEEEEEET---TTTEEEEEEECCC-----------CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             cEEEEEECC-CC-EEEEEeCCCcEEEEee---ccccccccccccc--------ccccccceEEEcccccccceeeeecCC
Confidence            456788864 45 5556667889999986   34443 3332110        001112244779999999977665332


Q ss_pred             ---CEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          125 ---HVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       125 ---~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                         ..|+.++.. |.  ..+.......   .......+.-..-+.|+++|+ ++++++-...+.|+.++...+....
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~---~~~~~~~gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSLSVPTHSS---QASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCcceeeecccccceeeeeeccccccc---cceeeeecccCceeeeccCCC-CCeeEEECCCCEEEEEECCCCCEEE
Confidence               357777753 33  3332211000   000000011123578999998 6777777778999999988775544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.9  Score=35.08  Aligned_cols=108  Identities=10%  Similarity=-0.038  Sum_probs=57.2

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCC---------CCEEEE
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPH---------ICALLI  175 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~---------~g~LyV  175 (269)
                      ....|+++++|.++++-..++.|+.++..............            -...+.|++.|.         ++.+++
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h------------~~~v~~~~~~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR------------TSKINAISWKPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC------------SSCEEEEEECCCC------CCSCCEEE
T ss_pred             ceeEEEeccCccccccccccccccceeeccccccccccccc------------ccccceeeecccccccccccCCCCeeE
Confidence            34679999999866555567889999865431111110000            112234444432         244555


Q ss_pred             EECCCCeEEEEECCC-CeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEcCCCCc
Q 024317          176 SDHGNQLIRQINLKP-EDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIRHTGRL  238 (269)
Q Consensus       176 aD~~n~~I~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad~~g~~  238 (269)
                      +-...+.|+.++.+. .........              .-....++++.+++.++-+..++.+
T Consensus       232 sgs~D~~i~iw~~~~~~~~~~~~~~--------------h~~~V~~v~~~~~~~l~s~g~D~~v  281 (287)
T d1pgua2         232 TGSLDTNIFIYSVKRPMKIIKALNA--------------HKDGVNNLLWETPSTLVSSGADACI  281 (287)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTS--------------STTCEEEEEEEETTEEEEEETTSCE
T ss_pred             eecCCCeEEEEECCCCCeEEEEeCC--------------CCCCeEEEEECCCCEEEEEECCCeE
Confidence            555567788888643 222211111              1133567777777776655555544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.56  E-value=0.46  Score=41.00  Aligned_cols=81  Identities=10%  Similarity=0.058  Sum_probs=56.9

Q ss_pred             CCCceEEEcCCCC-EEEEeCCCCEEEEEeCCcc-eEEecCCCCCCCCCCC-ccccccccCceEEEEeCCCCEEEEEECCC
Q 024317          104 DKPKSFAVDMKGN-IYVADKSNHVIRKITNLGV-TTIAGGGSKKEGRADG-PAQNASFSNDFELTFVPHICALLISDHGN  180 (269)
Q Consensus       104 ~~P~giavd~~G~-lyVaD~~n~~I~~~~~~g~-~~~~g~~~~~~~~~~~-~~~~~~l~~P~gia~~~~~g~LyVaD~~n  180 (269)
                      ++|+|+.++++|. +||+....+.+.++|-... ..+.+....    .+. .+....-..|-.-++|.+ |+.|.+-.-.
T Consensus       275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~----~~~~~~e~elglgPLht~fd~~-g~aytslfid  349 (459)
T d1fwxa2         275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP----RSAVVAEPELGLGPLHTAFDGR-GNAYTSLFLD  349 (459)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-G----GGGEEECCBCCSCEEEEEECTT-SEEEEEETTT
T ss_pred             CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCc----cccEEeecccCcCccccccCCC-ceEEEEeecc
Confidence            6899999999999 8999888999999986433 222211100    000 001111246889999986 8999999999


Q ss_pred             CeEEEEECC
Q 024317          181 QLIRQINLK  189 (269)
Q Consensus       181 ~~I~~~~~~  189 (269)
                      ..|.+++.+
T Consensus       350 s~v~kw~~~  358 (459)
T d1fwxa2         350 SQVVKWNIE  358 (459)
T ss_dssp             TEEEEEEHH
T ss_pred             ceEEEEecc
Confidence            999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.11  E-value=1.3  Score=33.68  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEE-EEcCCcc----cCC-CCCc-ccccCCCCceEEEcCCCCEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKR-LAGDGVQ----GYS-DGEP-GSARFDKPKSFAVDMKGNIY  118 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~-~~g~g~~----g~~-dg~~-~~~~~~~P~giavd~~G~ly  118 (269)
                      ....+++++ ++.++++-...+.|..++.   .++.... +.+....    .+. +... ................+.++
T Consensus       145 ~~~~~~~~~-~~~~l~~~~~d~~v~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (317)
T d1vyhc1         145 WVRMVRPNQ-DGTLIASCSNDQTVRVWVV---ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  220 (317)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             cceeeeccc-CCCEEEEEeCCCeEEEEee---ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCcee
Confidence            345677754 5566665555666777764   2333222 2211100    000 1110 01111222223333455555


Q ss_pred             EEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Q 024317          119 VADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDCSK  195 (269)
Q Consensus       119 VaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~~~  195 (269)
                      ++-...+.|+.++.. +.  .++.+.                -.....++++++ +.++++-..++.|+.++........
T Consensus       221 ~~~~~d~~i~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~  283 (317)
T d1vyhc1         221 LSGSRDKTIKMWDVSTGMCLMTLVGH----------------DNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMK  283 (317)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC----------------SSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             EeccCCCEEEEEECCCCcEEEEEeCC----------------CCCEEEEEECCC-CCEEEEEECCCeEEEEECCCCcEEE
Confidence            555556677777743 33  333332                123467888887 5555444456789999876543221


Q ss_pred             ecccCccCCCcccceeeeeccceeeEEEecCCcEEEE-cCCCCc
Q 024317          196 SSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYII-RHTGRL  238 (269)
Q Consensus       196 ~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVa-d~~g~~  238 (269)
                      ....              .-.....+++.+++++.++ ..+|.+
T Consensus       284 ~~~~--------------h~~~V~~~~~s~~~~~l~s~s~Dg~i  313 (317)
T d1vyhc1         284 TLNA--------------HEHFVTSLDFHKTAPYVVTGSVDQTV  313 (317)
T ss_dssp             EEEC--------------CSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             EEcC--------------CCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence            1111              0123567888888854444 344443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=1.7  Score=34.63  Aligned_cols=76  Identities=13%  Similarity=0.191  Sum_probs=43.3

Q ss_pred             CceEEEcCC-CCEEEEeCCCCEEEEEeC-Ccc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCC
Q 024317          106 PKSFAVDMK-GNIYVADKSNHVIRKITN-LGV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQ  181 (269)
Q Consensus       106 P~giavd~~-G~lyVaD~~n~~I~~~~~-~g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~  181 (269)
                      ...++++++ +.++++=...+.|+.+|. .+.  .++.+.....            ...-..++. ++ +..+++-...+
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v------------~~~~~s~~~-~d-g~~l~s~s~D~  273 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV------------QGGIFALSW-LD-SQKFATVGADA  273 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC------------CSCEEEEEE-SS-SSEEEEEETTS
T ss_pred             cEEeeeccccceeccccccccceeeeeecccccccccccccccc------------ccceeeeec-cC-CCEEEEEeCCC
Confidence            467889885 567776666788999984 344  3332211100            001122332 44 55555555678


Q ss_pred             eEEEEECCCCeEEE
Q 024317          182 LIRQINLKPEDCSK  195 (269)
Q Consensus       182 ~I~~~~~~~~~~~~  195 (269)
                      .|+.++...+....
T Consensus       274 ~i~iwd~~~~~~~~  287 (325)
T d1pgua1         274 TIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEE
Confidence            89999988765443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=1.7  Score=34.76  Aligned_cols=114  Identities=9%  Similarity=0.011  Sum_probs=62.9

Q ss_pred             ceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEcCCCCEEEEeCCCCEE
Q 024317           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (269)
Q Consensus        48 ~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd~~G~lyVaD~~n~~I  127 (269)
                      ..|++++ +++++++-...+.|..++.   ..++.......             .-.....+++.+++..+++-...+.|
T Consensus       125 ~~l~~s~-~~~~l~s~~~dg~v~i~~~---~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         125 RSVCFSP-DGKFLATGAEDRLIRIWDI---ENRKIVMILQG-------------HEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEET---TTTEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEECC-CCCcceecccccccccccc---ccccccccccc-------------ccccccccccccccccccccccceee
Confidence            4578865 5666666556677888874   34443332211             11233567777777755554556788


Q ss_pred             EEEeCCcc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Q 024317          128 RKITNLGV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQINLKPEDC  193 (269)
Q Consensus       128 ~~~~~~g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~~~~~~~~  193 (269)
                      +.++.... .......               -..+..+++.+.+++++++-..++.|+.++......
T Consensus       188 ~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         188 RIWDLRTGQCSLTLSI---------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             EEEETTTTEEEEEEEC---------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             eeeecccccccccccc---------------ccccccccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence            88886554 2211110               122344555554466665555567788888765543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=2.2  Score=33.92  Aligned_cols=71  Identities=10%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             cceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCCcccccCCCCceEEEc---CCCCEEEEeCC
Q 024317           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD---MKGNIYVADKS  123 (269)
Q Consensus        47 P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~~~~~~~~~P~giavd---~~G~lyVaD~~  123 (269)
                      ...++++|+.+.++++-...+.|..+|.   .+++.........             ....++.+.   ++|.++++=..
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~---~~~~~~~~l~~~~-------------~~v~~~~~s~~~~dg~~l~s~s~  271 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDG---KSGEFLKYIEDDQ-------------EPVQGGIFALSWLDSQKFATVGA  271 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEET---TTCCEEEECCBTT-------------BCCCSCEEEEEESSSSEEEEEET
T ss_pred             cEEeeeccccceeccccccccceeeeee---ccccccccccccc-------------cccccceeeeeccCCCEEEEEeC
Confidence            4678888767788887777888999985   4555443321100             011122222   67777777667


Q ss_pred             CCEEEEEeCC
Q 024317          124 NHVIRKITNL  133 (269)
Q Consensus       124 n~~I~~~~~~  133 (269)
                      .+.|+.+|..
T Consensus       272 D~~i~iwd~~  281 (325)
T d1pgua1         272 DATIRVWDVT  281 (325)
T ss_dssp             TSEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            7889999854

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=4  Score=33.11  Aligned_cols=117  Identities=14%  Similarity=0.008  Sum_probs=58.8

Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCC-cc--eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCC-
Q 024317          105 KPKSFAVDMKGNIYVADKSNHVIRKITNL-GV--TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGN-  180 (269)
Q Consensus       105 ~P~giavd~~G~lyVaD~~n~~I~~~~~~-g~--~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n-  180 (269)
                      ....+++.++|.| ++=..++.|++++.. ++  ..+-.....          ...-...+.|+++|++..|+.+-..+ 
T Consensus       186 ~~~~v~~s~dg~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~l----------~~h~~~V~~l~~spdg~~l~sgs~D~t  254 (393)
T d1sq9a_         186 FATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSM----------INNSNSIRSVKFSPQGSLLAIAHDSNS  254 (393)
T ss_dssp             CCCEEEECTTSEE-EEECTTSEEEEEETTTTEEEEEEECCC-------------CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred             cEEEEEECCCCEE-EEEeCCCcEEEEeeccccccccccccccc----------ccccceEEEcccccccceeeeecCCCC
Confidence            3567889888744 455567899999864 33  222211100          00113357899999844444442222 


Q ss_pred             -CeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          181 -QLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       181 -~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                       ..|+.++........................+ .-.....|++.++|++.++-
T Consensus       255 ~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             EEEEEEEETTTCCEEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEE
T ss_pred             cceeeecccccceeeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEE
Confidence             35788887765433322110000000000000 12335678888888766654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.12  E-value=5.9  Score=31.33  Aligned_cols=84  Identities=10%  Similarity=0.032  Sum_probs=46.4

Q ss_pred             CcceEEEecCCCeEEEEeCCCCEEEEEecCCCCCccEEEEEcCCcccCCCCC-----cccccCCCCceEEEcCCCCEEEE
Q 024317           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGE-----PGSARFDKPKSFAVDMKGNIYVA  120 (269)
Q Consensus        46 ~P~giav~~~~g~lyV~D~~~~~I~~~dl~~~~~g~~~~~~g~g~~g~~dg~-----~~~~~~~~P~giavd~~G~lyVa  120 (269)
                      .-..|++++ +|+++++-. .+.|..+|+   .+++.............+..     .....-..-..|++.++|+++++
T Consensus        64 ~V~~l~fs~-dg~~lasg~-d~~i~iW~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          64 VVCCVKFSN-DGEYLATGC-NKTTQVYRV---SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CCCEEEECT-TSSEEEEEC-BSCEEEEET---TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             cEEEEEECC-CCCEEEEEe-CCeEEEEEe---cccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            357889975 677666654 678888885   35554333222110000000     00011112356899999997777


Q ss_pred             eCCCCEEEEEeCCc
Q 024317          121 DKSNHVIRKITNLG  134 (269)
Q Consensus       121 D~~n~~I~~~~~~g  134 (269)
                      -..++.|+.++...
T Consensus       139 ~~~dg~v~i~~~~~  152 (388)
T d1erja_         139 GAEDRLIRIWDIEN  152 (388)
T ss_dssp             EETTSCEEEEETTT
T ss_pred             cccccccccccccc
Confidence            66678888888544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.17  E-value=3.9  Score=30.92  Aligned_cols=64  Identities=14%  Similarity=0.038  Sum_probs=35.1

Q ss_pred             EEEcCCCCEEEEeCCCCEEEEEeCCcceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEE-ECCC----CeE
Q 024317          109 FAVDMKGNIYVADKSNHVIRKITNLGVTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLIS-DHGN----QLI  183 (269)
Q Consensus       109 iavd~~G~lyVaD~~n~~I~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVa-D~~n----~~I  183 (269)
                      |++.++|+||+.|...+..+++.....                        .....+++|++..|+++ +...    ..|
T Consensus        15 v~f~~~~dl~~~d~~~g~~~~Lt~~~~------------------------~~~~p~~SPDG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2          15 IIFVCCDDLWEHDLKSGSTRKIVSNLG------------------------VINNARFFPDGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECSSS------------------------EEEEEEECTTSSEEEEEEEESTTCCEEEE
T ss_pred             EEEEeCCcEEEEECCCCCEEEEecCCC------------------------cccCEEECCCCCEEEEEEeeCCCCCceEE
Confidence            666677778888776555555542210                        11234567775556443 2211    247


Q ss_pred             EEEECCCCeEEEe
Q 024317          184 RQINLKPEDCSKS  196 (269)
Q Consensus       184 ~~~~~~~~~~~~~  196 (269)
                      ++++..++.....
T Consensus        71 ~~~~~~~g~~~~l   83 (281)
T d1k32a2          71 YFYNGENGEIKRI   83 (281)
T ss_dssp             EEEETTTTEEEEC
T ss_pred             EEEEecCCceEEe
Confidence            7777777665554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=6.5  Score=29.85  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=37.3

Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCcc---eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeEEEE
Q 024317          110 AVDMKGNIYVADKSNHVIRKITNLGV---TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLIRQI  186 (269)
Q Consensus       110 avd~~G~lyVaD~~n~~I~~~~~~g~---~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I~~~  186 (269)
                      ++..+++++++-...+.|+.++....   ..+.+...             .-.....++.++   +++++-..++.|+.+
T Consensus       222 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-------------HQSAVTCLQFNK---NFVITSSDDGTVKLW  285 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-------------CSSCEEEEEECS---SEEEEEETTSEEEEE
T ss_pred             EEecCCCEEEEEcCCCEEEEEecccccccccccccce-------------eeeceeecccCC---CeeEEEcCCCEEEEE
Confidence            34445666666666788888886543   23222110             012234455443   344444456889999


Q ss_pred             ECCCCeE
Q 024317          187 NLKPEDC  193 (269)
Q Consensus       187 ~~~~~~~  193 (269)
                      +.+.+..
T Consensus       286 d~~tg~~  292 (342)
T d2ovrb2         286 DLKTGEF  292 (342)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCCE
Confidence            9775443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=80.58  E-value=9.8  Score=28.77  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeC-Cc-------ceEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEEC
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITN-LG-------VTTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDH  178 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~-~g-------~~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~  178 (269)
                      .-+.+||+|-||..-.  ..+++-.+ +.       ..+..|...              .+.-.-|-++|+ |.||-...
T Consensus        90 kflffdP~G~LyaVt~--~~LYr~~pPtn~~q~W~g~a~~vG~~g--------------w~df~~lFFdP~-G~LYaV~~  152 (235)
T d1tl2a_          90 QFLFFDPNGYLYAVSK--DKLYKASPPQSDTDNWIARATEVGSGG--------------WSGFKFLFFHPN-GYLYAVHG  152 (235)
T ss_dssp             SEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHSEEEECSS--------------GGGEEEEEECTT-SCEEEEET
T ss_pred             EEEEECCCceEEEecC--cceecCCcCcccchhhhhhhhhhccCC--------------cCceeEEEECCC-ceEEEEEC
Confidence            3499999999998874  57877753 21       133344321              222346888997 99997753


Q ss_pred             CCCeEEEEECCCCeEEEecccCccCCCcccceeeeeccceeeEEEecCCcEEEEc
Q 024317          179 GNQLIRQINLKPEDCSKSSQSGSALGAVSVWVLVSVLSCLVSLVIGFVARPYIIR  233 (269)
Q Consensus       179 ~n~~I~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~l~~p~gia~d~~g~lyVad  233 (269)
                        +++.+-.+-.+.-......+...+.       ..-..++.|.+.++|+|+-+.
T Consensus       153 --~~l~k~~pP~~~~d~WL~~st~igr-------~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         153 --QQFYKALPPVSNQDNWLARATKIGQ-------GGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             --TEEEEECCCSSTTCCHHHHCEEEES-------SSGGGEEEEEECTTSCEEEEE
T ss_pred             --CcEEEcCCCCCCCchhhhhhhhhcc-------CcccCceEEEECCCCcEEEEe
Confidence              3565554332211111000000010       012457889999999998874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.15  E-value=7.7  Score=29.27  Aligned_cols=73  Identities=4%  Similarity=-0.082  Sum_probs=44.6

Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeCC--cc-eEEecCCCCCCCCCCCccccccccCceEEEEeCCCCEEEEEECCCCeE
Q 024317          107 KSFAVDMKGNIYVADKSNHVIRKITNL--GV-TTIAGGGSKKEGRADGPAQNASFSNDFELTFVPHICALLISDHGNQLI  183 (269)
Q Consensus       107 ~giavd~~G~lyVaD~~n~~I~~~~~~--g~-~~~~g~~~~~~~~~~~~~~~~~l~~P~gia~~~~~g~LyVaD~~n~~I  183 (269)
                      .+|+++++|++.++=...+.|+.++.+  .. ..+.....             .-....++++.++++.++++-...+.|
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-------------h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-------------YKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-------------CSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-------------CCCCEEEEEEeCCCCCEEEEcccccce
Confidence            679999999966665567788888732  22 22211100             011246788887656666665556778


Q ss_pred             EEEECCCCe
Q 024317          184 RQINLKPED  192 (269)
Q Consensus       184 ~~~~~~~~~  192 (269)
                      +.++.....
T Consensus        82 ~~w~~~~~~   90 (342)
T d1yfqa_          82 LKVDLIGSP   90 (342)
T ss_dssp             EEECSSSSS
T ss_pred             eeeeccccc
Confidence            888776543