Citrus Sinensis ID: 024367

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
cccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHcEEEEcccccccEEEEEccccHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHcccccccccccEEEEEEccccccc
cccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEcccccHHHHHHHHccHccEEEEEEEEEEEEEccEEEEEcHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEcccccccccccHHcccccccEEcccEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHcccccEEEEEEEccccccc
mapditpttitkttslskapslpkraYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLvamlpdvpeEHRKILIEQGcilreiepvyppenqtqFAMAYYVINYSKLRIWEFVEYSKMiyldgdiqvfdnidhlfdlpdgyfyaVMDCfcektwshtpqfkigycqqcpdkvkwpaelgpkpalyfnagmfvfepslstYHDLLETVqittptsfaeQDFLNMYFrdiyrpippiYNLVVAMLWrhpenveadkAKVVHYCAAVSTIL
mapditpttitkttslskapslpkRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVamlpdvpeeHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
MAPDitpttitkttSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
************************RAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVS***
*************************AYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
**********************PKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV****
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MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAVSTIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
C7G304338 Galactinol synthase 2 OS= N/A no 0.985 0.781 0.826 1e-132
Q9FXB2335 Galactinol synthase 2 OS= yes no 0.970 0.776 0.795 1e-125
O22893344 Galactinol synthase 1 OS= no no 0.988 0.770 0.782 1e-124
O80518334 Galactinol synthase 3 OS= no no 0.895 0.718 0.809 1e-119
O22693334 Galactinol synthase 4 OS= no no 0.981 0.787 0.729 1e-114
Q9XGN4333 Galactinol synthase 1 OS= N/A no 0.902 0.726 0.764 1e-112
Q8H1S1336 Galactinol synthase 6 OS= no no 0.902 0.720 0.769 1e-112
Q9XGN3292 Galactinol synthase 2 (Fr N/A no 0.835 0.767 0.799 1e-109
Q9FFA1333 Galactinol synthase 5 OS= no no 0.902 0.726 0.753 1e-109
F4KED2328 Galactinol synthase 10 OS no no 0.944 0.771 0.684 1e-103
>sp|C7G304|GOLS2_SOLLC Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/265 (82%), Positives = 241/265 (90%), Gaps = 1/265 (0%)

Query: 1   MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVA 60
           MAP++     TK T L+KA SL  RAYVTFLAG+GDYWKGVVGLVKGLRKAKS YPL+VA
Sbjct: 1   MAPNVFGLA-TKATGLAKAKSLSSRAYVTFLAGNGDYWKGVVGLVKGLRKAKSAYPLVVA 59

Query: 61  MLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY 120
            LPDVPEEHR+ILI QGCI+REIEPVYPP NQTQFAMAYYVINYSKLRIWEFVEYSKMIY
Sbjct: 60  CLPDVPEEHRRILINQGCIVREIEPVYPPHNQTQFAMAYYVINYSKLRIWEFVEYSKMIY 119

Query: 121 LDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGP 180
           LDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQ+K+GYCQQCPDKV+W  +LGP
Sbjct: 120 LDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKVGYCQQCPDKVQWTEDLGP 179

Query: 181 KPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVV 240
           KP+LYFNAGMFV+EPSLSTY DLL+T+++T PT FAEQDFLNMYFRD+Y+PIP  YNLV+
Sbjct: 180 KPSLYFNAGMFVYEPSLSTYDDLLKTLKVTPPTPFAEQDFLNMYFRDVYKPIPNDYNLVL 239

Query: 241 AMLWRHPENVEADKAKVVHYCAAVS 265
           AMLWRHPENV+ +K KVVHYCAA S
Sbjct: 240 AMLWRHPENVDLEKVKVVHYCAAGS 264
Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. May promote plant stress tolerance.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2EC: 3
>sp|Q9FXB2|GOLS2_ARATH Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1 Back     alignment and function description
>sp|O22893|GOLS1_ARATH Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|O80518|GOLS3_ARATH Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1 Back     alignment and function description
>sp|O22693|GOLS4_ARATH Galactinol synthase 4 OS=Arabidopsis thaliana GN=GOLS4 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN4|GOLS1_AJURE Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1S1|GOLS6_ARATH Galactinol synthase 6 OS=Arabidopsis thaliana GN=GOLS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN3|GOLS2_AJURE Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FFA1|GOLS5_ARATH Galactinol synthase 5 OS=Arabidopsis thaliana GN=GOLS5 PE=2 SV=1 Back     alignment and function description
>sp|F4KED2|GOLSA_ARATH Galactinol synthase 10 OS=Arabidopsis thaliana GN=GOLS10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
167858183337 galactinol synthase 3 [Populus trichocar 0.988 0.786 0.822 1e-131
321268093334 galactinol synthase [Solanum tuberosum] 0.985 0.790 0.833 1e-130
321268079334 galactinol synthase [Solanum commersonii 0.985 0.790 0.833 1e-130
224124982337 predicted protein [Populus trichocarpa] 0.988 0.786 0.818 1e-130
345114183337 galactinol synthase II [Populus alba x P 0.988 0.786 0.818 1e-130
255548353336 conserved hypothetical protein [Ricinus 0.985 0.785 0.833 1e-130
350534726338 galactinol synthase 2 [Solanum lycopersi 0.985 0.781 0.826 1e-130
224124414306 predicted protein [Populus trichocarpa] 0.988 0.866 0.818 1e-130
339655354337 galactinol synthase 2-2 [Populus trichoc 0.988 0.786 0.815 1e-130
146747227336 galactinol synthase [Capsicum annuum] 0.985 0.785 0.822 1e-129
>gi|167858183|gb|ACA04032.1| galactinol synthase 3 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/265 (82%), Positives = 239/265 (90%)

Query: 1   MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVA 60
           MAP IT      T SL K  SL   AYVTFLAGDGDYWKGVVGL KGLRKAKSKYPL+VA
Sbjct: 1   MAPHITTALANSTNSLVKQASLSSCAYVTFLAGDGDYWKGVVGLAKGLRKAKSKYPLVVA 60

Query: 61  MLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY 120
           +LPDVPEEHR IL+ QGCI+REIEPV+PPENQTQFAM YYVINYSKLRIWEFVEYSKMIY
Sbjct: 61  ILPDVPEEHRMILVSQGCIVREIEPVHPPENQTQFAMPYYVINYSKLRIWEFVEYSKMIY 120

Query: 121 LDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGP 180
           LDGDIQVFDNIDHLFD+PDGYFYAVMDCFCEKTWS++PQ+KIGYCQQCPDKV+WPAE+GP
Sbjct: 121 LDGDIQVFDNIDHLFDMPDGYFYAVMDCFCEKTWSNSPQYKIGYCQQCPDKVQWPAEMGP 180

Query: 181 KPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVV 240
           KP LYFNAGMFV+EP+LSTYHDLLETV++T+PT FAEQDFLNM+FRD+Y+PIP  YNLV+
Sbjct: 181 KPPLYFNAGMFVYEPNLSTYHDLLETVKVTSPTLFAEQDFLNMFFRDVYKPIPSDYNLVL 240

Query: 241 AMLWRHPENVEADKAKVVHYCAAVS 265
           AMLWRHPEN+  DK KVVHYCAA S
Sbjct: 241 AMLWRHPENINLDKVKVVHYCAAGS 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|321268093|gb|ADW78849.1| galactinol synthase [Solanum tuberosum] gi|321268095|gb|ADW78850.1| galactinol synthase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|321268079|gb|ADW78842.1| galactinol synthase [Solanum commersonii] gi|321268081|gb|ADW78843.1| galactinol synthase [Solanum commersonii] Back     alignment and taxonomy information
>gi|224124982|ref|XP_002319473.1| predicted protein [Populus trichocarpa] gi|222857849|gb|EEE95396.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345114183|gb|AEN74906.1| galactinol synthase II [Populus alba x Populus grandidentata] Back     alignment and taxonomy information
>gi|255548353|ref|XP_002515233.1| conserved hypothetical protein [Ricinus communis] gi|223545713|gb|EEF47217.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|350534726|ref|NP_001234668.1| galactinol synthase 2 [Solanum lycopersicum] gi|403399401|sp|C7G304.1|GOLS2_SOLLC RecName: Full=Galactinol synthase 2; Short=GolS-2; Short=SlGolS2 gi|256542214|dbj|BAH98060.1| galactinol synthase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224124414|ref|XP_002330017.1| predicted protein [Populus trichocarpa] gi|222871442|gb|EEF08573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|339655354|gb|AEJ87261.1| galactinol synthase 2-2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|146747227|gb|ABQ44212.1| galactinol synthase [Capsicum annuum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2027549335 GolS2 "galactinol synthase 2" 0.895 0.716 0.846 2.3e-117
TAIR|locus:2062860344 GolS1 "AT2G47180" [Arabidopsis 0.988 0.770 0.771 8.2e-115
TAIR|locus:2012320334 GolS3 "galactinol synthase 3" 0.895 0.718 0.809 1.2e-113
TAIR|locus:2036576334 GolS4 "galactinol synthase 4" 0.981 0.787 0.725 2.1e-107
UNIPROTKB|Q9XGN4333 GOLS1 "Galactinol synthase 1" 0.936 0.753 0.746 8.3e-106
TAIR|locus:2136829336 GolS6 "galactinol synthase 6" 0.891 0.711 0.775 5.8e-105
UNIPROTKB|Q9XGN3292 GOLS2 "Galactinol synthase 2" 0.835 0.767 0.799 9.8e-103
TAIR|locus:2172848333 GolS5 "AT5G23790" [Arabidopsis 0.891 0.717 0.758 4.2e-102
TAIR|locus:2145855328 GolS10 "galactinol synthase 10 0.932 0.762 0.688 1.1e-96
TAIR|locus:2195668332 GolS7 "galactinol synthase 7" 0.902 0.728 0.673 7.8e-94
TAIR|locus:2027549 GolS2 "galactinol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 204/241 (84%), Positives = 228/241 (94%)

Query:    24 KRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREI 83
             KRAYVTFLAG GDY KGVVGL KGLRKAKSKYPL+VA+LPDVPE+HRK L++QGC+++EI
Sbjct:    21 KRAYVTFLAGTGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEDHRKQLVDQGCVVKEI 80

Query:    84 EPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFY 143
             EPVYPPENQT+FAMAYYVINYSKLRIWEFVEY+KMIYLDGDIQVFDNIDHLFDLP+G FY
Sbjct:    81 EPVYPPENQTEFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVFDNIDHLFDLPNGQFY 140

Query:   144 AVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWP-AELGPKPALYFNAGMFVFEPSLSTYHD 202
             AVMDCFCEKTWSH+PQ+KIGYCQQCPDKV WP A+LGPKP LYFNAGMFV+EP+LSTYH+
Sbjct:   141 AVMDCFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAGMFVYEPNLSTYHN 200

Query:   203 LLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCA 262
             LLETV+I  PT FAEQDFLNMYF+DIY+PIPP+YNLV+AMLWRHPEN+E D+ KVVHYCA
Sbjct:   201 LLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELDQVKVVHYCA 260

Query:   263 A 263
             A
Sbjct:   261 A 261
GO:0005634 "nucleus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0047216 "inositol 3-alpha-galactosyltransferase activity" evidence=IDA
GO:0006012 "galactose metabolic process" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IMP
TAIR|locus:2062860 GolS1 "AT2G47180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012320 GolS3 "galactinol synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036576 GolS4 "galactinol synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN4 GOLS1 "Galactinol synthase 1" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2136829 GolS6 "galactinol synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN3 GOLS2 "Galactinol synthase 2" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2172848 GolS5 "AT5G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145855 GolS10 "galactinol synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195668 GolS7 "galactinol synthase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C7G304GOLS2_SOLLC2, ., 4, ., 1, ., 1, 2, 30.82640.98500.7810N/Ano
Q9FXB2GOLS2_ARATH2, ., 4, ., 1, ., 1, 2, 30.79540.97010.7761yesno
Q9XGN4GOLS1_AJURE2, ., 4, ., 1, ., 1, 2, 30.76440.90290.7267N/Ano
Q9XGN3GOLS2_AJURE2, ., 4, ., 1, ., 1, 2, 30.79910.83580.7671N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GOLS3
SubName- Full=Putative uncharacterized protein; (337 aa)
(Populus trichocarpa)
Predicted Functional Partners:
MYB055
hypothetical protein (146 aa)
      • 0.702
CIPK7
SubName- Full=CBL-interacting protein kinase 7 (CBL-interacting protein kinase 8); (439 aa)
      • 0.702
eugene3.00660115
homoserine dehydrogenase family protein (376 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
PLN00176333 PLN00176, PLN00176, galactinol synthase 0.0
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 4e-78
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 3e-58
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 8e-14
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 4e-13
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-10
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 2e-09
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 5e-08
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information 
 Score =  569 bits (1469), Expect = 0.0
 Identities = 220/265 (83%), Positives = 237/265 (89%), Gaps = 2/265 (0%)

Query: 1   MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVA 60
           MAP++T   I  +      P   KRAYVTFLAG+GDY KGVVGL KGLRK KS YPL+VA
Sbjct: 1   MAPELTVKKIAASPKALAKP--AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVA 58

Query: 61  MLPDVPEEHRKILIEQGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY 120
           +LPDVPEEHR+IL+ QGCI+REIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY
Sbjct: 59  VLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY 118

Query: 121 LDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGP 180
           LDGDIQVF+NIDHLFDLPDGYFYAVMDCFCEKTWSHTPQ+KIGYCQQCPDKV WPAELGP
Sbjct: 119 LDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGP 178

Query: 181 KPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVV 240
            P LYFNAGMFVFEPSLSTY DLLET++IT PT FAEQDFLNM+FRDIY+PIPP+YNLV+
Sbjct: 179 PPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVL 238

Query: 241 AMLWRHPENVEADKAKVVHYCAAVS 265
           AMLWRHPENVE DK KVVHYCAA S
Sbjct: 239 AMLWRHPENVELDKVKVVHYCAAGS 263

Length = 333
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.97
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.97
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.97
PLN02718603 Probable galacturonosyltransferase 99.94
PLN02523559 galacturonosyltransferase 99.94
PLN02867535 Probable galacturonosyltransferase 99.91
PLN02659534 Probable galacturonosyltransferase 99.91
PLN02870533 Probable galacturonosyltransferase 99.9
PLN02829639 Probable galacturonosyltransferase 99.89
PLN02742534 Probable galacturonosyltransferase 99.89
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.88
PLN02769629 Probable galacturonosyltransferase 99.88
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.6
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.88
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.47
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 98.43
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 97.94
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 95.28
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 94.54
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 92.18
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 91.79
PLN03181 453 glycosyltransferase; Provisional 91.62
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 90.06
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 80.54
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=6.2e-59  Score=407.14  Aligned_cols=265  Identities=83%  Similarity=1.423  Sum_probs=234.3

Q ss_pred             CCCCcccccccccccccCCCCCCCeEEEEEeecCcccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEE
Q 024367            1 MAPDITPTTITKTTSLSKAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCIL   80 (268)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~t~l~~d~~Y~~~~~vl~~Sl~~~~~~~~ivvl~~~~i~~~~~~~L~~~~~~~   80 (268)
                      |+|.++...+.+......  ..+++||||++++|++|++++.+|++||+++++.+++++++++++++++++.|++.|+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~--~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V   78 (333)
T PLN00176          1 MAPELTVKKIAASPKALA--KPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIV   78 (333)
T ss_pred             CCCccchhhhcccccccc--ccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence            778887764444332222  267899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccCCCCchhhhhhccccccchheeccccccccEEEEEecceecccCcccccCCCCCceeeeecccccCCCCCCCcc
Q 024367           81 REIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQF  160 (268)
Q Consensus        81 ~~v~~l~~~~~~~~~~~~~~~~~~~KL~i~~l~~~drvlYLD~D~lv~~~l~eLf~~~~~~iaav~d~~~~~~~~~~p~~  160 (268)
                      ++|+++.++++...+..+++..+|+||++|++.+|+||||||+|++|++||||||+++.+.+|||.||+|+..+++.|++
T Consensus        79 ~~V~~i~~~~~~~~~~~~~~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~  158 (333)
T PLN00176         79 REIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQY  158 (333)
T ss_pred             EEecccCCcccccccccchhhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccc
Confidence            99998876555445555556678999999999999999999999999999999999976679999999999889999999


Q ss_pred             cccccccCCCCCCCCccCCCCCCCCccceEEEEecCHHHHHHHHHHhhccCCCCCCChHHHHHHHccCccccCCcccccc
Q 024367          161 KIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRDIYRPIPPIYNLVV  240 (268)
Q Consensus       161 ~~~~~~~~p~~~~~~~~~g~~~~~yfNsGv~li~~~~~~~~~l~~~~~~~~~~~~~DQd~LN~~~~~~~~~Lp~~yN~~~  240 (268)
                      ++++|..+|++++||...|.++..||||||||++|+.++++++++.+.......|+|||+||.+|.++|..||.+||++.
T Consensus       159 ~~~~c~~~~~~~~wp~~~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~  238 (333)
T PLN00176        159 KIGYCQQCPDKVTWPAELGPPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVL  238 (333)
T ss_pred             cccccccchhhccchhhccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCch
Confidence            99999988888999877775567899999999999999999999998766567899999999999999999999999999


Q ss_pred             cccccCCCcccCCCceEEEeecCCCCC
Q 024367          241 AMLWRHPENVEADKAKVVHYCAAVSTI  267 (268)
Q Consensus       241 ~~~~~~~~~~~~~~~~IiHf~g~~~KP  267 (268)
                      .+.|+|++.|+.++++||||+|.+.||
T Consensus       239 ~~~~~~~~~~~~~~vkIIHY~~~~~KP  265 (333)
T PLN00176        239 AMLWRHPENVELDKVKVVHYCAAGSKP  265 (333)
T ss_pred             hhhhhChhhcccCCcEEEEeeCCCCCC
Confidence            888889988888899999999867898

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 7e-16
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 7e-16
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 9e-16
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 2e-15
1zcy_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 7e-15
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 8e-15
1zcv_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 2e-14
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 2e-14
1ll0_A 339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 3e-14
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 3e-14
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 3e-14
1zcu_A 353 Apo Form Of The 162s Mutant Of Glycogenin Length = 3e-14
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 4e-14
1ll2_A 333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 5e-14
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 7e-04
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 21  SLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGC 78
           S+  +A+VT    D  Y KG + L   L++ ++   L+V   P V +  RK+L  +    
Sbjct: 22  SMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 79  ILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLP 138
           I+ ++       + T        +  +KL  W   +YSK +++D D  V  NID LFD  
Sbjct: 81  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 139 DGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLS 198
           +                             PD   WP          FN+G+FV++PS+ 
Sbjct: 141 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 166
Query: 199 TYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRH--PENVE 251
           TY+ LL            +Q  LN +F      DI + +P IYNL    ++ +     V 
Sbjct: 167 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 226
Query: 252 ADKAKVVHYCAAV 264
              AKVVH+   V
Sbjct: 227 GASAKVVHFLGRV 239
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 4e-44
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 7e-44
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 5e-16
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-13
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  151 bits (381), Expect = 4e-44
 Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 44/251 (17%)

Query: 22  LPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILR 81
           +  +A+VT    D  Y KG + L   L++ ++   L V   P V +  RK L      + 
Sbjct: 1   MTDQAFVTLTTND-AYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVI 59

Query: 82  EIEPVYPP--ENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPD 139
            ++ +      + T        +  +KL  W   +YSK +++D D  V  NID LF+   
Sbjct: 60  TVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE- 118

Query: 140 GYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLST 199
               A  D                                      FN+G+FV++PS+ T
Sbjct: 119 -ELSAAPDPG--------------------------------WPDCFNSGVFVYQPSVET 145

Query: 200 YHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENVEA-- 252
           Y+ LL            +Q  LN +F      DI + +P IYNL    ++ +    +A  
Sbjct: 146 YNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFG 205

Query: 253 DKAKVVHYCAA 263
             AKVVH+   
Sbjct: 206 ANAKVVHFLGQ 216
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1o7q_A289 N-acetyllactosaminide alpha-1,3- galactosyltransfe 87.07
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=4.6e-45  Score=312.61  Aligned_cols=210  Identities=29%  Similarity=0.471  Sum_probs=178.7

Q ss_pred             CCCeEEEEEeecCcccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCCCc--hhhhhhcc
Q 024367           22 LPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPEN--QTQFAMAY   99 (268)
Q Consensus        22 ~~~~a~~t~l~~d~~Y~~~~~vl~~Sl~~~~~~~~ivvl~~~~i~~~~~~~L~~~~~~~~~v~~l~~~~~--~~~~~~~~   99 (268)
                      .+++||||++ +|++|+++++++++||++++++++++++++++++++.++.|++.+..++.|+.+.....  ...+.++.
T Consensus         2 ~~~~AyvTl~-td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~   80 (263)
T 3u2u_A            2 MTDQAFVTLT-TNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE   80 (263)
T ss_dssp             TTTEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred             CcceEEEEEE-ECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence            4689999954 79999999999999999999999999999999999999999999999988888775321  11233344


Q ss_pred             ccccchheeccccccccEEEEEecceecccCcccccCCCCCceeeeecccccCCCCCCCcccccccccCCCCCCCCccCC
Q 024367          100 YVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELG  179 (268)
Q Consensus       100 ~~~~~~KL~i~~l~~~drvlYLD~D~lv~~~l~eLf~~~~~~iaav~d~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~g  179 (268)
                      +..+|+||.+|++.+||||||||+|++|++|+++||+++  .+||++|.                        +||    
T Consensus        81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~--~~aA~~d~------------------------~~~----  130 (263)
T 3u2u_A           81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE--ELSAAPDP------------------------GWP----  130 (263)
T ss_dssp             GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSC--SSEEEECT------------------------TST----
T ss_pred             hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCC--cceEeccC------------------------CCC----
Confidence            567999999999999999999999999999999999997  48888762                        332    


Q ss_pred             CCCCCCccceEEEEecCHHHHHHHHHHhhccCCCCCCChHHHHHHHcc-----CccccCCcccccccccccCCCccc--C
Q 024367          180 PKPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRD-----IYRPIPPIYNLVVAMLWRHPENVE--A  252 (268)
Q Consensus       180 ~~~~~yfNsGv~li~~~~~~~~~l~~~~~~~~~~~~~DQd~LN~~~~~-----~~~~Lp~~yN~~~~~~~~~~~~~~--~  252 (268)
                          .||||||||++++...++++++.+.+..++.++|||+||.+|.+     +++.||.+||++....|.+...+.  .
T Consensus       131 ----~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~  206 (263)
T 3u2u_A          131 ----DCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG  206 (263)
T ss_dssp             ----TSEEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred             ----ccccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhc
Confidence                79999999999999999999999877667889999999999987     789999999999865554433332  5


Q ss_pred             CCceEEEeecCCCCC
Q 024367          253 DKAKVVHYCAAVSTI  267 (268)
Q Consensus       253 ~~~~IiHf~g~~~KP  267 (268)
                      ++++||||+| +.||
T Consensus       207 ~~~~IIHf~g-~~KP  220 (263)
T 3u2u_A          207 ASAKVVHFLG-RVKP  220 (263)
T ss_dssp             GGCSEEECCS-SSCG
T ss_pred             CCeEEEEECC-CCcC
Confidence            7899999999 7898
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 2e-36
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-14
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  128 bits (321), Expect = 2e-36
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 44/249 (17%)

Query: 24  KRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREI 83
            +A+VT    D  Y KG + L   L++ ++   L V   P V +  RK L      +  +
Sbjct: 3   DQAFVTLTTND-AYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 84  EPVYPP--ENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGY 141
           + +      + T        +  +KL  W   +YSK +++D D  V  NID LF+     
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE--- 118

Query: 142 FYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYH 201
                                      PD         P     FN+G+FV++PS+ TY+
Sbjct: 119 ----------------------ELSAAPD---------PGWPDCFNSGVFVYQPSVETYN 147

Query: 202 DLLETVQITTPTSFAEQDFLNMYF-----RDIYRPIPPIYNLVVAMLWRHPENVEA--DK 254
            LL            +Q  LN +F      DI + +P IYNL    ++ +    +A    
Sbjct: 148 QLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGAN 207

Query: 255 AKVVHYCAA 263
           AKVVH+   
Sbjct: 208 AKVVHFLGQ 216
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 95.28
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 91.49
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.1e-39  Score=276.84  Aligned_cols=209  Identities=27%  Similarity=0.419  Sum_probs=171.7

Q ss_pred             CCeEEEEEeecCcccHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCCCchh--hhhhccc
Q 024367           23 PKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKILIEQGCILREIEPVYPPENQT--QFAMAYY  100 (268)
Q Consensus        23 ~~~a~~t~l~~d~~Y~~~~~vl~~Sl~~~~~~~~ivvl~~~~i~~~~~~~L~~~~~~~~~v~~l~~~~~~~--~~~~~~~  100 (268)
                      ...||||+. +|++|+++|+|+++||+++++.++++++++++++++.++.|++.+..++.++.+..+....  .....++
T Consensus         2 ~~~A~vt~~-t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVTLT-TNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEEEE-eCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            568999954 7999999999999999999999999999999999999999999999988888877653221  1122446


Q ss_pred             cccchheeccccccccEEEEEecceecccCcccccCCCCCceeeeecccccCCCCCCCcccccccccCCCCCCCCccCCC
Q 024367          101 VINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGP  180 (268)
Q Consensus       101 ~~~~~KL~i~~l~~~drvlYLD~D~lv~~~l~eLf~~~~~~iaav~d~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~g~  180 (268)
                      .++|+||++|++.+||||||||||+||++||++||+.+.  ++|+.+.                        +       
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~--~~a~~~~------------------------~-------  127 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE--LSAAPDP------------------------G-------  127 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCS--SEEEECS------------------------S-------
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCc--cceeccC------------------------C-------
Confidence            688999999999999999999999999999999999974  5666541                        1       


Q ss_pred             CCCCCccceEEEEecCHHHHHHHHHHhhccCCCCCCChHHHHHHHcc-----CccccCCcccccccccccCCCcc--cCC
Q 024367          181 KPALYFNAGMFVFEPSLSTYHDLLETVQITTPTSFAEQDFLNMYFRD-----IYRPIPPIYNLVVAMLWRHPENV--EAD  253 (268)
Q Consensus       181 ~~~~yfNsGv~li~~~~~~~~~l~~~~~~~~~~~~~DQd~LN~~~~~-----~~~~Lp~~yN~~~~~~~~~~~~~--~~~  253 (268)
                       ...|||||||++++++++++.+.+.+....+..+.||+++|..+.+     .+..||..||+.....|.....+  ...
T Consensus       128 -~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T d1ll2a_         128 -WPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA  206 (263)
T ss_dssp             -STTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGG
T ss_pred             -CcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcC
Confidence             1378999999999999999999998877767788999999999875     46678888888765544332222  267


Q ss_pred             CceEEEeecCCCCC
Q 024367          254 KAKVVHYCAAVSTI  267 (268)
Q Consensus       254 ~~~IiHf~g~~~KP  267 (268)
                      +++||||+| +.||
T Consensus       207 ~~~iIHf~g-~~KP  219 (263)
T d1ll2a_         207 NAKVVHFLG-QTKP  219 (263)
T ss_dssp             GCSEEECCS-SCCG
T ss_pred             CeEEEEeCC-CCCC
Confidence            899999999 6798
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure