Citrus Sinensis ID: 024381

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSLYPCLSFKAS
ccccccccEEEEccccHHHHHHHHcccHHccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccHHHHccccccccHHHHHcccccccEEEEccccHHHHHcccEEccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHcHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccccccccccEEccccHHHHHHHHHHHHHHHHHEEEEEEEEcccEEEEEEEEcccccccccccccccccEEEccccccHHHHHHHcccEEEEEEEcccccEEEcccccHHHHHHccEEEcccccHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEcccccEEEEEEEEcc
mlnripkdfdiITSAELKEVVRVFSQCeivgkrfpichvhfENTIVEVssfstsgrrfsrdfkyeferpigcdekdfIRWRNClqrdftinglmfdpYAKIIYDYIGGIEDIRKAKVqtvipastsfqEDCARILRAIRIAARLGFRFSRETAHFvkhlspsilklDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKhgfrrrdkrSNLLLVISTYLLLIITLFFFEILSFlgysrgqtdcsrgslypclsfkas
mlnripkdfdiitsaeLKEVVRVFSQCEIVGKRFPICHVHFEntivevssfstsgrrfsRDFKYeferpigcdekdfiRWRNCLQRDftinglmfdPYAKIIYDYIGGIEDIRKAKVQTVipastsfqedcARILRAIRIAARLGFRFSretahfvkhlspsilklDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHgfrrrdkrsnLLLVISTYLLLIITLFFFEILSFLGYSrgqtdcsrgslypclsfkas
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVssfstsgrrfsrdfKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKiiydyiggiediRKAKVQTVIPASTSFQEDCarilrairiaarlGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNlllvistyllliitlfffeilsflGYSRGQTDCSRGSLYPCLSFKAS
*******DFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSLYPCLS****
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS****************GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQ*****GSL*****F***
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSLYPCLSFKAS
***RIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR**********ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSLYPCLSFKA*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
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MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSLYPCLSFKAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
P44439 452 Probable poly(A) polymera yes no 0.783 0.464 0.314 2e-26
P0ABF1 465 Poly(A) polymerase OS=Esc N/A no 0.768 0.443 0.321 2e-25
P0ABF2 465 Poly(A) polymerase OS=Esc yes no 0.768 0.443 0.321 2e-25
P0ABF3 465 Poly(A) polymerase OS=Esc N/A no 0.768 0.443 0.321 2e-25
Q8Z9C3 465 Poly(A) polymerase OS=Sal N/A no 0.768 0.443 0.316 1e-24
Q8ZRQ8 465 Poly(A) polymerase OS=Sal yes no 0.768 0.443 0.312 4e-24
A4IQ63 404 CCA-adding enzyme OS=Geob yes no 0.694 0.460 0.338 1e-17
Q5KXX0 404 CCA-adding enzyme OS=Geob yes no 0.727 0.482 0.328 6e-17
A8FEH9 400 CCA-adding enzyme OS=Baci yes no 0.604 0.405 0.355 1e-15
Q7SIB1 404 CCA-adding enzyme OS=Geob N/A no 0.694 0.460 0.323 2e-15
>sp|P44439|PCNB_HAEIN Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1 Back     alignment and function desciption
 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
           +L + PKDFD+ T+A  +++  +F  QC +VG+RF + H+ F   I+EV++F  + S  R
Sbjct: 61  LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120

Query: 58  FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
                K   E  +  D       ++  +RDFT+N L ++P    + DY  GI+D++  K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180

Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T +QED  R+LR+IR  A+L     + +   ++ L+P +  +   RL  E   
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240

Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
           +L  G    + RLL ++GL E L P  +AY  +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 273
Polymerase that creates the 3' poly(A) tail found in some mRNAs.
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (strain K12) GN=pcnB PE=1 SV=2 Back     alignment and function description
>sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157:H7 GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q8Z9C3|PCNB_SALTI Poly(A) polymerase OS=Salmonella typhi GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q8ZRQ8|PCNB_SALTY Poly(A) polymerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|A4IQ63|CCA_GEOTN CCA-adding enzyme OS=Geobacillus thermodenitrificans (strain NG80-2) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q5KXX0|CCA_GEOKA CCA-adding enzyme OS=Geobacillus kaustophilus (strain HTA426) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q7SIB1|CCA_GEOSE CCA-adding enzyme OS=Geobacillus stearothermophilus GN=cca PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255540089 524 poly(A) polymerase, putative [Ricinus co 0.843 0.431 0.783 1e-104
224119782 515 predicted protein [Populus trichocarpa] 0.858 0.446 0.760 1e-101
225425222 537 PREDICTED: CCA-adding enzyme [Vitis vini 0.858 0.428 0.743 1e-100
224134120 481 predicted protein [Populus trichocarpa] 0.858 0.478 0.739 4e-99
356507386 540 PREDICTED: uncharacterized protein LOC10 0.858 0.425 0.717 5e-96
357520559 543 Poly(A) polymerase [Medicago truncatula] 0.835 0.412 0.732 3e-95
297808367 533 polynucleotide adenylyltransferase famil 0.843 0.424 0.722 2e-93
22327016 527 Polynucleotide adenylyltransferase famil 0.843 0.428 0.718 2e-92
356511530 538 PREDICTED: CCA-adding enzyme-like [Glyci 0.835 0.416 0.733 2e-92
18377862 527 AT5g23690/MQM1_4 [Arabidopsis thaliana] 0.843 0.428 0.713 1e-91
>gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis] gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/226 (78%), Positives = 205/226 (90%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L RIPKDFDIITSAEL+EV R FS+CEIVG+RFPICHV+  +T+VEVSSFST+G++F  
Sbjct: 111 ILKRIPKDFDIITSAELREVARAFSRCEIVGRRFPICHVYVGDTVVEVSSFSTTGQKFGG 170

Query: 61  DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
           D+ Y+ + PI CDEKD++RWRNC QRDFTINGLMFDPY KI+YDYIGG+EDIRKAKV+TV
Sbjct: 171 DWNYDTQSPIDCDEKDYMRWRNCSQRDFTINGLMFDPYEKIVYDYIGGLEDIRKAKVRTV 230

Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
            PAS SFQEDCARILRA+RIAARLGFRFSRETAHF+KH + SIL+LD+GRLLMEMNYMLA
Sbjct: 231 TPASNSFQEDCARILRAVRIAARLGFRFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLA 290

Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVI 226
           YGS+EASLRLLWKFGLLE+LLPIQAAY V  GF+RRDKRSN+LL +
Sbjct: 291 YGSSEASLRLLWKFGLLEILLPIQAAYFVHCGFKRRDKRSNMLLSL 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa] gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425222|ref|XP_002266814.1| PREDICTED: CCA-adding enzyme [Vitis vinifera] gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa] gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507386|ref|XP_003522448.1| PREDICTED: uncharacterized protein LOC100796540 [Glycine max] Back     alignment and taxonomy information
>gi|357520559|ref|XP_003630568.1| Poly(A) polymerase [Medicago truncatula] gi|355524590|gb|AET05044.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327016|ref|NP_197758.2| Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511530|ref|XP_003524478.1| PREDICTED: CCA-adding enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2171641 527 AT5G23690 [Arabidopsis thalian 0.824 0.419 0.594 1.3e-66
TAIR|locus:2099473 881 AT3G48830 [Arabidopsis thalian 0.824 0.250 0.583 3.7e-64
TAIR|locus:2010439 541 AT1G28090 [Arabidopsis thalian 0.820 0.406 0.552 2.7e-61
TAIR|locus:2053913 757 AT2G17580 [Arabidopsis thalian 0.533 0.188 0.433 4.7e-39
TIGR_CMR|GSU_3250 459 GSU_3250 "polyA polymerase" [G 0.179 0.104 0.458 9.3e-14
UNIPROTKB|Q4K5Y6 463 pcnB "Poly(A) polymerase" [Pse 0.776 0.449 0.248 1.5e-13
UNIPROTKB|P0ABF1 465 pcnB [Escherichia coli K-12 (t 0.791 0.455 0.246 2.4e-12
TIGR_CMR|SO_0872 478 SO_0872 "polyA polymerase" [Sh 0.779 0.437 0.227 3.9e-11
UNIPROTKB|Q9KUC8 457 VC_0594 "PolyA polymerase" [Vi 0.772 0.452 0.223 7.6e-11
TIGR_CMR|VC_0594 457 VC_0594 "polyA polymerase" [Vi 0.772 0.452 0.223 7.6e-11
TAIR|locus:2171641 AT5G23690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 132/222 (59%), Positives = 157/222 (70%)

Query:     1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
             +L R PKDFDI+TSAEL+EVVR F +CEIVG+RFPICHVH  + ++EV            
Sbjct:   108 ILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSR 167

Query:    61 XXKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQT 119
               + E +   G D ++D IR  NCLQRDFTINGLMFDPYAK            RKAKV+T
Sbjct:   168 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 227

Query:   120 VIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
             VI A TSF +DC             GFR S+ETAHF+K+LS  + +LD+GR+LMEMNYML
Sbjct:   228 VIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 287

Query:   180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSN 221
             AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR+N
Sbjct:   288 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTN 329
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
TAIR|locus:2099473 AT3G48830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010439 AT1G28090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053913 AT2G17580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3250 GSU_3250 "polyA polymerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K5Y6 pcnB "Poly(A) polymerase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABF1 pcnB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0872 SO_0872 "polyA polymerase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUC8 VC_0594 "PolyA polymerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0594 VC_0594 "polyA polymerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.21LOW CONFIDENCE prediction!
4th Layer2.7.7.25LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII001025
hypothetical protein (515 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
COG0617 412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 4e-44
TIGR01942 410 TIGR01942, pcnB, poly(A) polymerase 2e-42
PRK11623 472 PRK11623, pcnB, poly(A) polymerase I; Provisional 2e-28
PRK13299 394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 4e-21
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 2e-17
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 4e-17
TIGR02692 466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 1e-16
pfam1262764 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- 1e-12
PRK13298 417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 4e-09
PRK10885 409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 6e-09
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 5e-05
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  153 bits (389), Expect = 4e-44
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 22/255 (8%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L R PKD DI T+A  +EV ++F     VG++F    V F   I+EV         F +
Sbjct: 36  LLGRPPKDVDIATNATPEEVKKLFRNTRPVGRKFGTVTVPFNGEIIEV-------TTFRK 88

Query: 61  DFKYEFERPIGCD-----EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
           +      RP+        E+D  R      RDFTIN L +DP    I D  GG++D+   
Sbjct: 89  EGYGYNGRPLPVVFPGTLEEDLKR------RDFTINALAYDPEDGEIIDPFGGLKDLENR 142

Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
            ++ +  AS  F+ED  RILRA R AARLGF    ET   ++ ++P + K+ R RL  E+
Sbjct: 143 VLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIRLMAPLLAKISRERLWDEL 202

Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV----KHGFRRRDKRSNLLLVISTYLL 231
             +L   +   +L+LL ++G L++L P               R  +   +    +   L 
Sbjct: 203 KKLLLSPNPREALQLLREYGALKILFPELDKLFGVPKLLLALREIELLLHNTDELLLALA 262

Query: 232 LIITLFFFEILSFLG 246
            ++  F     +   
Sbjct: 263 ALLPAFLLAAATLPL 277

Length = 412
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
TIGR02692 466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
PRK10885 409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
PRK13298 417 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK11623 472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942 410 pcnB poly(A) polymerase. This model describes the 100.0
PRK13299 394 tRNA CCA-pyrophosphorylase; Provisional 100.0
COG0617 412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
PRK00275 895 glnD PII uridylyl-transferase; Provisional 99.96
PRK03381 774 PII uridylyl-transferase; Provisional 99.95
PRK00227 693 glnD PII uridylyl-transferase; Provisional 99.95
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 99.95
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.95
PRK03059 856 PII uridylyl-transferase; Provisional 99.95
PRK05092 931 PII uridylyl-transferase; Provisional 99.94
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 99.94
PRK01759 854 glnD PII uridylyl-transferase; Provisional 99.93
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 99.93
PRK05007 884 PII uridylyl-transferase; Provisional 99.92
PRK04374 869 PII uridylyl-transferase; Provisional 99.91
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.42
PHA01806200 hypothetical protein 99.36
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 96.18
PRK12704 520 phosphodiesterase; Provisional 95.93
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 95.66
cd00077145 HDc Metal dependent phosphohydrolases with conserv 95.3
PRK00106 535 hypothetical protein; Provisional 94.98
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 94.93
smart00471124 HDc Metal dependent phosphohydrolases with conserv 94.77
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 94.71
TIGR00295164 conserved hypothetical protein TIGR00295. This set 94.63
COG1418 222 Predicted HD superfamily hydrolase [General functi 94.33
PRK12705 508 hypothetical protein; Provisional 94.09
TIGR01596 177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 91.69
PRK12703339 tRNA 2'-O-methylase; Reviewed 91.52
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 91.5
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 90.87
TIGR03401 228 cyanamide_fam HD domain protein, cyanamide hydrata 88.84
KOG1573204 consensus Aldehyde reductase [General function pre 88.61
COG1480 700 Predicted membrane-associated HD superfamily hydro 88.44
COG2206 344 c-di-GMP phosphodiesterase class II (HD-GYP domain 88.26
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 86.95
COG1078 421 HD superfamily phosphohydrolases [General function 86.85
COG3481287 Predicted HD-superfamily hydrolase [General functi 83.38
TIGR03276 179 Phn-HD phosphonate degradation operons associated 81.93
PF05153 253 DUF706: Family of unknown function (DUF706) ; Inte 80.9
PF07514 327 TraI_2: Putative helicase; InterPro: IPR011119 The 80.64
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-58  Score=441.34  Aligned_cols=242  Identities=22%  Similarity=0.302  Sum_probs=211.5

Q ss_pred             CCCCCCCceEEEeCCCHHHHHHHhcc----CcccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhh
Q 024381            1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD   76 (268)
Q Consensus         1 llg~~~~D~Di~t~~~~~~~~~~f~~----~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eD   76 (268)
                      |||++|+|+||+|+++|+++++.|.+    ...+|+.|||+.+..++..+||+++|++.++..+..+  .....+++++|
T Consensus        41 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~--~v~~~~~i~~D  118 (466)
T TIGR02692        41 LLGRLGHDLDFTTDARPEETLAILRPWADAVWDTGIAFGTVGAEKDGQQIEITTFRSDSYDGTSRKP--EVTFGDTLEGD  118 (466)
T ss_pred             HcCCCCCCEEEEeCCCHHHHHHHHHHhhhhccccCcccceEEEEECCcEEEEEecccccCcCCCCCC--cccCCCCHHHH
Confidence            68999999999999999999999873    3478999999999999999999999998766543322  11113468999


Q ss_pred             hHHhhhhccCCccccceeecCCCC---eEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHH
Q 024381           77 FIRWRNCLQRDFTINGLMFDPYAK---IIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA  153 (268)
Q Consensus        77 L~r~~d~~rRDFTINAma~~~~~~---~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~  153 (268)
                      |.      |||||||||||++.++   .|+|||||++||++|+||++++|.++|.|||+||||+||||+++||.|+++|.
T Consensus       119 l~------rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~  192 (466)
T TIGR02692       119 LI------RRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVR  192 (466)
T ss_pred             HH------hccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHH
Confidence            96      9999999999999754   89999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh-h-cCCccCchhHhHHHHHHh--c
Q 024381          154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV-K-HGFRRRDKRSNLLLVIST--Y  229 (268)
Q Consensus       154 ~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~-q-~~yH~~d~~~~~l~~l~~--~  229 (268)
                      ++|++++..+..++.||++.||.++|.++++..+++.|+++|+|..+|||+..+.. | +.||++|++.|++..+-.  .
T Consensus       193 ~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~~~~~~~~~~h~~~v~~Htl~vl~~~~~  272 (466)
T TIGR02692       193 AAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPALRLEIDEHHQHKDVYEHSLTVLRQAID  272 (466)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHHHhcccccCCCCCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998753 5 678889999998765432  1


Q ss_pred             c---CchhHHHHHHHhcccCCCCC
Q 024381          230 L---LLIITLFFFEILSFLGYSRG  250 (268)
Q Consensus       230 ~---~~~~~L~lA~LlHDIGKg~g  250 (268)
                      +   ....+|+||+|||||||+.+
T Consensus       273 l~~~~~~~~l~lAaLLHDiGK~~t  296 (466)
T TIGR02692       273 LEDDGPDLVLRWAALLHDIGKPAT  296 (466)
T ss_pred             ccccccCHHHHHHHHHhhccCCCC
Confidence            1   23447999999999999974

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information
>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>KOG1573 consensus Aldehyde reductase [General function prediction only] Back     alignment and domain information
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only] Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1 Back     alignment and domain information
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 3e-12
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 1e-11
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 1e-11
1miy_A 404 Crystal Structure Of Bacillus Stearothermophilus Cc 2e-04
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure 
Iteration: 1

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 3/215 (1%)
Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
           +L + PKDFD+ T+A  ++V ++F  C +VG+RF + HV F   I+EV            
Sbjct: 46  LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 61  XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
                     G   +D I      +  +RDFTIN L +                 +   +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T ++ED              G R S ETA  +  L+  +  +   RL  E   
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
           +L  G    + +LL ++ L + L P    Y  ++G
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 4e-74
1miw_A 404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 1e-40
1ou5_A 448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 5e-29
3h38_A 441 TRNA nucleotidyl transferase-related protein; tran 2e-28
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 8e-28
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
 Score =  231 bits (590), Expect = 4e-74
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 3/227 (1%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L + PKDFD+ T+A  ++V ++F  C +VG+RF + HV F   I+EV++F         
Sbjct: 46  LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105

Query: 61  DFKYEFERPIGCDEKDFIR---WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
           D         G   +D I      +  +RDFTIN L +      + DY+GG++D++   +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165

Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T ++ED  R+LRA+R AA+LG R S ETA  +  L+  +  +    L  E   
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLK 225

Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
           +L  G    + +LL ++ L + L P    Y  ++G    ++    +L
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVL 272
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
1miw_A 404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 100.0
1ou5_A 448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
3h38_A 441 TRNA nucleotidyl transferase-related protein; tran 100.0
3djb_A 223 Hydrolase, HD family; all alpha-helical protein., 94.98
3b57_A 209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 94.35
3dto_A 223 BH2835 protein; all alpha-helical protein, structu 94.35
2qgs_A 225 Protein Se1688; alpha-helical protein, structural 94.35
2pjq_A 231 Uncharacterized protein LP_2664; LPR71, NESG, stru 94.27
3gw7_A 239 Uncharacterized protein YEDJ; all alpha-helical pr 93.89
2pq7_A 220 Predicted HD superfamily hydrolase; 104161995, HD 92.95
2hek_A 371 Hypothetical protein; predominantly alpha helical 92.73
2o08_A 188 BH1327 protein; putative HD superfamily hydrolase, 92.52
3ccg_A 190 HD superfamily hydrolase; NP_347894.1, HD domain, 92.28
2ogi_A 196 Hypothetical protein SAG1661; structural genomics, 92.26
2ibn_A 250 Inositol oxygenase; reductase, DIIRON, structural 89.48
3kq5_A 393 Hypothetical cytosolic protein; structural genomic 85.32
3m5f_A 244 Metal dependent phosphohydrolase; CAS3, prokaryoti 85.23
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 84.69
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 83.49
3hc1_A 305 Uncharacterized HDOD domain protein; HDOD domain p 83.41
2dqb_A 376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 82.78
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 81.21
3rf0_A 209 Exopolyphosphatase; structural genomics, center fo 80.83
1vqr_A 297 Hypothetical protein CJ0248; HD-domain/pdease-like 80.69
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
Probab=100.00  E-value=2.3e-59  Score=440.59  Aligned_cols=252  Identities=28%  Similarity=0.436  Sum_probs=215.7

Q ss_pred             CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccc--ccC---ccccccC----CCC
Q 024381            1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF--SRD---FKYEFER----PIG   71 (268)
Q Consensus         1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~--~~~---~~~d~~~----~~~   71 (268)
                      |||++|+|+||+|+++|++++++|+++..+|++|||++|..++..+||+|||++.+..  ...   +..+.+.    ..+
T Consensus        46 LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~  125 (415)
T 3aql_A           46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG  125 (415)
T ss_dssp             HHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCCEEESSSCEEEEEECCC-----------------------CCCC
T ss_pred             HcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCC
Confidence            5899999999999999999999998888899999999999999999999999976532  000   0011111    236


Q ss_pred             CChhhhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHH
Q 024381           72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE  151 (268)
Q Consensus        72 ~~~eDL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~  151 (268)
                      ++++||.      |||||||||||++.+|.|+|||||++||++|+||++++|.++|.|||+||||+||||+++||.|+++
T Consensus       126 tl~eDl~------RRDFTINAla~~~~~~~l~D~~gG~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~  199 (415)
T 3aql_A          126 SIEEDAQ------RRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPE  199 (415)
T ss_dssp             CHHHHHT------TSSBSGGGCEEETTTCCEECSSSHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHH
T ss_pred             CHHHHHh------cCCccceeEEEeCCCCeeeCCCCCHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHH
Confidence            7899986      9999999999999888999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhh-cCCccCchhHhHHHH----H
Q 024381          152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK-HGFRRRDKRSNLLLV----I  226 (268)
Q Consensus       152 t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q-~~yH~~d~~~~~l~~----l  226 (268)
                      |.++|++++..|..++.||++.||.|||.++++..+|+.|+++|+|..++|++..+++| ..||++++..|++..    +
T Consensus       200 T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~~d~~i  279 (415)
T 3aql_A          200 TAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRI  279 (415)
T ss_dssp             HHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999887 448888887777654    3


Q ss_pred             HhccCchhHHHHHHHhc-ccCCC------C-C----CccccCCc
Q 024381          227 STYLLLIITLFFFEILS-FLGYS------R-G----QTDCSRGS  258 (268)
Q Consensus       227 ~~~~~~~~~L~lA~LlH-DIGKg------~-g----~~h~~~g~  258 (268)
                      ....+.+++|+||+||| |||||      + |    ++|+..|.
T Consensus       280 ~~~~~~~~~L~lAALLH~di~K~~~~~~~~~G~~~~~~h~~~ga  323 (415)
T 3aql_A          280 HNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMN  323 (415)
T ss_dssp             HTTCCCCHHHHHHHHTHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHhHhcCcchhhhhhhhhhccCCCchHHHHHHHH
Confidence            34456778999999999 99997      3 2    37876653
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii} Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1miwa1 265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 1e-13
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 1e-12
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 4e-11
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 6e-10
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 5e-09
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 9e-09
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 66.8 bits (162), Expect = 1e-13
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%)

Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
           ++TV  A   F+ED  R++RA+R  + LGF  + +T   +   +P +  +   R+ MEM 
Sbjct: 2   IRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEME 61

Query: 177 YMLAYGSAEASLRLLWKFGLLEVL--LPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLII 234
            +L    A  +L LL + GL   L  L  +   L      R    +      +     + 
Sbjct: 62  KLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAAYRWPWLAAREERWALLCHALG 121

Query: 235 TLFFFEILSFLGYSRGQTD 253
                  L          D
Sbjct: 122 VQESRPFLRAWKLPNKVVD 140
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.93
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 99.93
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 99.92
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.9
d1miwa1 265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 99.89
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.87
d3dtoa1 212 Uncharacterized protein BH2835 {Bacillus haloduran 91.21
d3b57a1 201 Uncharacterized protein Lin1889 {Listeria innocua 90.93
d2pq7a1 217 Predicted hydrolase mes0020 {Uncultured thermotoga 90.91
d3djba1 213 Uncharacterized protein BT9727_1981 {Bacillus thur 90.88
d2pjqa1 215 Uncharacterized protein LP2664 {Lactobacillus plan 88.03
d2qgsa1 216 Uncharacterized protein SE1688 {Staphylococcus epi 84.82
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.93  E-value=4.5e-27  Score=187.21  Aligned_cols=106  Identities=19%  Similarity=0.302  Sum_probs=83.5

Q ss_pred             CCCCCCCceEEEeCCCHHHHHHHhccC----cccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhh
Q 024381            1 MLNRIPKDFDIITSAELKEVVRVFSQC----EIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD   76 (268)
Q Consensus         1 llg~~~~D~Di~t~~~~~~~~~~f~~~----~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eD   76 (268)
                      |||++|+||||+|+++|.++++.+.+.    ...++.||++++..++..+|++++|+|.+...+..+.   ...+++++|
T Consensus        24 llg~~~~DiDi~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~R~e~~~~~~~~~~---~~~~~i~eD  100 (136)
T d1vfga2          24 LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETYPRPGAYPK---VEPASLKED  100 (136)
T ss_dssp             HTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSCC------------CCCCCHHHH
T ss_pred             HcCCCCCCccEEEeeeecchhhhhhhccccccccccccccceeeeccchheehhceeccccccccCce---eeeehhhhh
Confidence            689999999999999999888766532    2457899999999999999999999998766544432   123567999


Q ss_pred             hHHhhhhccCCccccceeecCCC---CeEeecCCCHHHHhcC
Q 024381           77 FIRWRNCLQRDFTINGLMFDPYA---KIIYDYIGGIEDIRKA  115 (268)
Q Consensus        77 L~r~~d~~rRDFTINAma~~~~~---~~l~Dp~~G~~DL~~~  115 (268)
                      |.      |||||||||||++..   |+|+|||||++||+++
T Consensus       101 l~------RRDFTiNAma~~~~~~~~g~liDp~gG~~DL~~k  136 (136)
T d1vfga2         101 LI------RRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDK  136 (136)
T ss_dssp             HH------TSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTT
T ss_pred             hh------hcccchhheeeccCcCCCCEEEeCCCCHHHHhcC
Confidence            86      999999999999863   6899999999999985
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure