Citrus Sinensis ID: 024385
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | 2.2.26 [Sep-21-2011] | |||||||
| Q54XX1 | 290 | Signal recognition partic | yes | no | 0.727 | 0.672 | 0.331 | 6e-26 | |
| P47758 | 269 | Signal recognition partic | yes | no | 0.712 | 0.710 | 0.361 | 6e-23 | |
| Q9Y5M8 | 271 | Signal recognition partic | yes | no | 0.705 | 0.697 | 0.356 | 2e-22 | |
| Q4FZX7 | 269 | Signal recognition partic | yes | no | 0.712 | 0.710 | 0.356 | 2e-22 | |
| P36057 | 244 | Signal recognition partic | yes | no | 0.809 | 0.889 | 0.3 | 4e-12 | |
| Q52NJ3 | 198 | GTP-binding protein SAR1a | no | no | 0.473 | 0.641 | 0.287 | 7e-08 | |
| Q3T0D7 | 198 | GTP-binding protein SAR1a | no | no | 0.473 | 0.641 | 0.287 | 7e-08 | |
| Q9CQC9 | 198 | GTP-binding protein SAR1b | no | no | 0.473 | 0.641 | 0.287 | 3e-07 | |
| Q5R548 | 198 | GTP-binding protein SAR1a | no | no | 0.473 | 0.641 | 0.287 | 3e-07 | |
| Q9NR31 | 198 | GTP-binding protein SAR1a | no | no | 0.473 | 0.641 | 0.287 | 3e-07 |
| >sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K+ I + GLS +GKT L L + T TS+ N ++ +E+ KK + +
Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYI--TENKKK-----LPI 135
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
+DVPG+ + + L + L +A I++V+D F+ N + ++YLYDILTN +V +KKIPVL
Sbjct: 136 IDVPGNGKAKASLPKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVL 195
Query: 182 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFS 237
+ NK D + E ++ +E+E+D LR +R A + + + D LGI G F F
Sbjct: 196 VFNNKMDLDSTIDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFD 255
Query: 238 QCHNKV-----SVAEASGLTGEISQVEQFIR 263
N V S + ++G EI ++ FI+
Sbjct: 256 HLPNDVQFSNGSASPSNGELKEIDDIKNFIQ 286
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Dictyostelium discoideum (taxid: 44689) |
| >sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 11/202 (5%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ D+ ++ + +G
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN- 109
Query: 117 KPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 175
+ L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 -SLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 168
Query: 176 KKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQ 232
+LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 169 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGK 228
Query: 233 AFSFSQCHNKVSVAEASGLTGE 254
F FSQ KV E S G
Sbjct: 229 EFEFSQLPLKVEFLECSAKGGR 250
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Mus musculus (taxid: 10090) |
| >sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 10/199 (5%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
RR ++L GL SGKT+LF +L G ++ T TS+ D+ ++ + +G +
Sbjct: 60 RRSSQRAVLLVGLCDSGKTLLFVRLLTG-LYRDTQTSIT---DSCAVYRVNNNRGN--SL 113
Query: 120 HLVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
L+D+PGH LR + L+ F A IVFVVD+ F +E+LY +L +S +K
Sbjct: 114 TLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTP 173
Query: 179 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFS 235
LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F
Sbjct: 174 SFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE 233
Query: 236 FSQCHNKVSVAEASGLTGE 254
FSQ KV E S G
Sbjct: 234 FSQLPLKVEFLECSAKGGR 252
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Homo sapiens (taxid: 9606) |
| >sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 107/202 (52%), Gaps = 11/202 (5%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ D+ ++ + +G
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN- 109
Query: 117 KPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 175
+ L+D+PGH LR + LD F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 -SLTLIDLPGHESLRLQFLDRFKSSARAVVFVVDSATFQREVKDVAEFLYQVLIDSMALK 168
Query: 176 KKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQ 232
L+ CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 169 NTPAFLVACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGK 228
Query: 233 AFSFSQCHNKVSVAEASGLTGE 254
F FSQ KV E S G
Sbjct: 229 EFEFSQLPLKVEFLECSAKGGR 250
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Rattus norvegicus (taxid: 10116) |
| >sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 33/250 (13%)
Query: 39 LYIACAVLLLTTALLLLLQ-------VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91
L IAC +++ TT L+ +Q + ++ +I++AG SGKT L L S
Sbjct: 6 LIIACLLVIGTTIALIAVQKASSKTGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 65
Query: 92 GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA----GIVFV 147
TV S EP S + G V LVD PGH +LR KL ++L A G++F+
Sbjct: 66 -TVVSQEP-------LSAADYDGS--GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 115
Query: 148 VDALEFLPNCSAASEYLYDILT-NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206
VD+ + +E+L DIL+ + + I +LI CNK++ TA I+ +E EI
Sbjct: 116 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 175
Query: 207 DKLRASRS--------AVSEADVTNDFTLGI--PGQAFSFSQCHNKVSVAEASGLTGEIS 256
K+ R ++E D + TL + F F+ V E S +IS
Sbjct: 176 QKVIERRKKSLNEVERKINEEDYAEN-TLDVLQSTDGFKFANLEASVVAFEGSINKRKIS 234
Query: 257 QVEQFIREQV 266
Q ++I E++
Sbjct: 235 QWREWIDEKL 244
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+L
Sbjct: 74 FDLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Sus scrofa (taxid: 9823) |
| >sp|Q3T0D7|SAR1A_BOVIN GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+L
Sbjct: 74 FDLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Bos taurus (taxid: 9913) |
| >sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 74 FDLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRPEAISEERLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Mus musculus (taxid: 10090) |
| >sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 74 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Pongo abelii (taxid: 9601) |
| >sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 74 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus (By similarity). Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | ||||||
| 255568852 | 259 | Signal recognition particle receptor sub | 0.962 | 0.996 | 0.802 | 1e-116 | |
| 359473203 | 259 | PREDICTED: signal recognition particle r | 0.955 | 0.988 | 0.769 | 1e-115 | |
| 224061989 | 258 | predicted protein [Populus trichocarpa] | 0.958 | 0.996 | 0.785 | 1e-114 | |
| 356497639 | 259 | PREDICTED: signal recognition particle r | 0.958 | 0.992 | 0.743 | 1e-114 | |
| 449434947 | 266 | PREDICTED: signal recognition particle r | 0.958 | 0.966 | 0.772 | 1e-114 | |
| 356497641 | 260 | PREDICTED: signal recognition particle r | 0.951 | 0.980 | 0.745 | 1e-113 | |
| 449478588 | 266 | PREDICTED: signal recognition particle r | 0.958 | 0.966 | 0.768 | 1e-113 | |
| 307135965 | 266 | signal recognition particle receptor sub | 0.958 | 0.966 | 0.776 | 1e-112 | |
| 356502028 | 259 | PREDICTED: signal recognition particle r | 0.958 | 0.992 | 0.743 | 1e-112 | |
| 297810667 | 260 | signal recognition particle binding prot | 0.962 | 0.992 | 0.776 | 1e-111 |
| >gi|255568852|ref|XP_002525397.1| Signal recognition particle receptor subunit beta, putative [Ricinus communis] gi|223535360|gb|EEF37035.1| Signal recognition particle receptor subunit beta, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/258 (80%), Positives = 228/258 (88%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
EG+EQWK E ++WL +GIEF NQIPP QLY A AVLL+TT LL+++ FRR KS TIVL
Sbjct: 2 EGVEQWKNEAKQWLQQGIEFANQIPPAQLYAAAAVLLITTLFLLIIRFFRRTKSNTIVLT 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130
GLSGSGKTVLFYQLRDGS+HQGTVTSME NE TF+LHSE++KKGK+KPVH VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGTVTSMEQNEGTFILHSENSKKGKLKPVHFVDVPGHSRL 121
Query: 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190
R KLDEFLPQAAGIVFVVDALEFLPN SEYLYDILT ++VVK+KIPVLICCNKTDKV
Sbjct: 122 RSKLDEFLPQAAGIVFVVDALEFLPNLRGVSEYLYDILTKASVVKRKIPVLICCNKTDKV 181
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250
TAHTKEFIRKQ+EKEIDKLRASRS +SEAD+ NDFTLGIPG+ FSFS C NKV+VAE SG
Sbjct: 182 TAHTKEFIRKQLEKEIDKLRASRSGISEADIANDFTLGIPGEPFSFSHCSNKVTVAECSG 241
Query: 251 LTGEISQVEQFIREQVKP 268
LTGE SQVEQFIRE VKP
Sbjct: 242 LTGETSQVEQFIREHVKP 259
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473203|ref|XP_002265544.2| PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera] gi|297739076|emb|CBI28565.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/256 (76%), Positives = 228/256 (89%)
Query: 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGL 72
+EQW+ +L++W +G E+ +Q+P TQLY A AV+ +TT LL +++F+R KS T+VL GL
Sbjct: 4 LEQWRIQLQQWSRQGAEWFHQMPETQLYAAIAVVFVTTFFLLSIRLFKRTKSNTVVLTGL 63
Query: 73 SGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132
SGSGKT LFYQL+DGS+H GTVTSM+PNE TFVLHSE KKGKIKPVH+VDVPGHSRLRP
Sbjct: 64 SGSGKTTLFYQLQDGSSHLGTVTSMDPNEGTFVLHSEIAKKGKIKPVHVVDVPGHSRLRP 123
Query: 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192
KLDEFLPQAAGIVFVVDALEFLPNC AASEYLYDILT S+VVKKKIPVLI CNKTDKVTA
Sbjct: 124 KLDEFLPQAAGIVFVVDALEFLPNCRAASEYLYDILTKSSVVKKKIPVLILCNKTDKVTA 183
Query: 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT 252
HTKEFIRKQ+EKEI+K RASRSA+S ADV N+FTLG+PG+AF FSQCHNKV+VA+ASGLT
Sbjct: 184 HTKEFIRKQLEKEIEKFRASRSAISAADVVNEFTLGVPGEAFGFSQCHNKVTVADASGLT 243
Query: 253 GEISQVEQFIREQVKP 268
GEISQ+E+FIRE VKP
Sbjct: 244 GEISQLEEFIREYVKP 259
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061989|ref|XP_002300699.1| predicted protein [Populus trichocarpa] gi|222842425|gb|EEE79972.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/257 (78%), Positives = 232/257 (90%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
EG+EQWK E ++WL +GIE+ +Q+PPTQLY A AVLL TT LLL +++ +R KS TIVL+
Sbjct: 2 EGIEQWKTEAQQWLQQGIEYAHQLPPTQLYAAVAVLLFTTLLLLTIRLLKRTKSNTIVLS 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130
GLSGSGKTVLFYQLRDGS+HQGTVTSMEPNE TF+LHSES KKGKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFLLHSESAKKGKIKPVHVVDVPGHSRL 121
Query: 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190
RPKLD+FLPQAAGIVFVVDALEFLPN SA +EYLYDILT ++VVK+K+PVLICCNKTDKV
Sbjct: 122 RPKLDDFLPQAAGIVFVVDALEFLPNLSAVTEYLYDILTKASVVKRKLPVLICCNKTDKV 181
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250
TAHTKEFIRKQ+EKEI+KLR SRS VS+AD+ ND+TLGIPG+ FSFSQC NKV++ EASG
Sbjct: 182 TAHTKEFIRKQLEKEIEKLRVSRSGVSDADIANDYTLGIPGEVFSFSQCINKVTIGEASG 241
Query: 251 LTGEISQVEQFIREQVK 267
LTGEISQVE+FIR VK
Sbjct: 242 LTGEISQVEEFIRAHVK 258
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497639|ref|XP_003517667.1| PREDICTED: signal recognition particle receptor subunit beta-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/257 (74%), Positives = 228/257 (88%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
E +EQWK++L + N ++ + ++PP QLY A A+++ TT LLL +++F+R KS T+VLA
Sbjct: 2 EELEQWKEQLSHFANLALDRLLEVPPNQLYAAAAIVIFTTLLLLSIRLFKRAKSNTVVLA 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130
GLSGSGKTV+FYQLRDGSTHQGTVTSMEPNE TF+LH+E T+KGKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVIFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRL 121
Query: 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190
RPKLDE+LPQAAGIVFVVDAL+FLPNC AASEYLYD+LT +VV+KKIPVLI CNKTDKV
Sbjct: 122 RPKLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKV 181
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250
TAHTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ F F+QC NKV+ A+ASG
Sbjct: 182 TAHTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFFFTQCSNKVTTADASG 241
Query: 251 LTGEISQVEQFIREQVK 267
LTGEISQ+E+FIRE VK
Sbjct: 242 LTGEISQLEEFIREHVK 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434947|ref|XP_004135257.1| PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/264 (77%), Positives = 233/264 (88%), Gaps = 7/264 (2%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL +G+EF++QIPP QLY+ VLL TT LLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLEQGLEFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVD 123
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE KK K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 184 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 243
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD+ NDFTLGIPG+AFSF+QCHNKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISAADIANDFTLGIPGKAFSFTQCHNKV 241
Query: 244 SVAEASGLTGEISQVEQFIREQVK 267
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497641|ref|XP_003517668.1| PREDICTED: signal recognition particle receptor subunit beta-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/255 (74%), Positives = 227/255 (89%)
Query: 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGL 72
+EQWK++L + N ++ + ++PP QLY A A+++ TT LLL +++F+R KS T+VLAGL
Sbjct: 5 LEQWKEQLSHFANLALDRLLEVPPNQLYAAAAIVIFTTLLLLSIRLFKRAKSNTVVLAGL 64
Query: 73 SGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132
SGSGKTV+FYQLRDGSTHQGTVTSMEPNE TF+LH+E T+KGKIKPVH+VDVPGHSRLRP
Sbjct: 65 SGSGKTVIFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRLRP 124
Query: 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192
KLDE+LPQAAGIVFVVDAL+FLPNC AASEYLYD+LT +VV+KKIPVLI CNKTDKVTA
Sbjct: 125 KLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKVTA 184
Query: 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT 252
HTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ F F+QC NKV+ A+ASGLT
Sbjct: 185 HTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFFFTQCSNKVTTADASGLT 244
Query: 253 GEISQVEQFIREQVK 267
GEISQ+E+FIRE VK
Sbjct: 245 GEISQLEEFIREHVK 259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478588|ref|XP_004155361.1| PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/264 (76%), Positives = 233/264 (88%), Gaps = 7/264 (2%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL +G++F++QIPP QLY+ VLL TT LLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLEQGLQFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVD 123
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE KK K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 184 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 243
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD+ NDFTLGIPG+AFSF+QCHNKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISAADIANDFTLGIPGKAFSFTQCHNKV 241
Query: 244 SVAEASGLTGEISQVEQFIREQVK 267
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135965|gb|ADN33824.1| signal recognition particle receptor subunit beta [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/264 (77%), Positives = 235/264 (89%), Gaps = 7/264 (2%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL RG+EF++QIPP QLY+ VLL TT LLLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLERGLEFVHQIPPIQLYVGVGVLLFTTLLLLLTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVD 123
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE KK K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 184 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 243
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD++NDFTLGIPG+AFSF+QC+NKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISTADISNDFTLGIPGKAFSFTQCYNKV 241
Query: 244 SVAEASGLTGEISQVEQFIREQVK 267
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502028|ref|XP_003519824.1| PREDICTED: signal recognition particle receptor subunit beta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/257 (74%), Positives = 227/257 (88%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
E +EQWK++L + N ++ + ++PP QLY A A+ + TT LLL +++F+R KS TIVL
Sbjct: 2 EELEQWKEQLSHFANLALDRLREVPPNQLYAAAAIAIFTTLLLLSIRLFKRAKSNTIVLT 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130
GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNE TF+LH+E T+KGKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRL 121
Query: 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190
RPKLDE+LPQAAG+VFVVDAL+FLPNC AASEYLYD+LT +VV+KKIP+LI CNKTDKV
Sbjct: 122 RPKLDEYLPQAAGVVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPMLILCNKTDKV 181
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250
TAHTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ FSF+QC NKV+ A+ASG
Sbjct: 182 TAHTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFSFTQCSNKVTTADASG 241
Query: 251 LTGEISQVEQFIREQVK 267
LTGEISQ+E+FIRE VK
Sbjct: 242 LTGEISQLEEFIREHVK 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810667|ref|XP_002873217.1| signal recognition particle binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319054|gb|EFH49476.1| signal recognition particle binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/259 (77%), Positives = 227/259 (87%), Gaps = 1/259 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLL-LQVFRRKKSTTIVL 69
E +E K E+W ++GIE++ +IPPTQLY A VLL TT LL L +++ RR KS T++L
Sbjct: 2 ENLEDLKILAEQWSHQGIEYLQKIPPTQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVLL 61
Query: 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129
+GLSGSGKTVLFYQLRDGS+HQGTVTSMEPNE TFVLHSE+TKKGKIKPVHLVDVPGHSR
Sbjct: 62 SGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSR 121
Query: 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189
LRPKL+EFLPQAA IVFVVDALEFLPNC AASEYLYDILTN+ VVKKKIPVL+CCNKTDK
Sbjct: 122 LRPKLEEFLPQAAAIVFVVDALEFLPNCRAASEYLYDILTNANVVKKKIPVLLCCNKTDK 181
Query: 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 249
+TAHTKEFIRKQMEKEI+KLRASRSAVS AD+ NDFT+GI G+ FSFS C NKV+VAEAS
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRSAVSTADIANDFTIGIEGEVFSFSHCSNKVTVAEAS 241
Query: 250 GLTGEISQVEQFIREQVKP 268
GLTGE Q+E FIRE +KP
Sbjct: 242 GLTGETVQIEDFIREYIKP 260
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | ||||||
| TAIR|locus:2166409 | 260 | AT5G05670 "AT5G05670" [Arabido | 0.962 | 0.992 | 0.733 | 1.5e-99 | |
| TAIR|locus:2054022 | 260 | AT2G18770 "AT2G18770" [Arabido | 0.962 | 0.992 | 0.706 | 4.1e-97 | |
| UNIPROTKB|Q5ZJA5 | 258 | Gga.31975 "Uncharacterized pro | 0.701 | 0.728 | 0.383 | 3.6e-27 | |
| MGI|MGI:102964 | 269 | Srprb "signal recognition part | 0.809 | 0.806 | 0.346 | 1.8e-25 | |
| RGD|1304698 | 269 | Srprb "signal recognition part | 0.809 | 0.806 | 0.346 | 1.8e-25 | |
| DICTYBASE|DDB_G0278543 | 290 | srpRB "signal recognition part | 0.712 | 0.658 | 0.338 | 2.2e-25 | |
| UNIPROTKB|F1NL17 | 963 | Gga.31975 "Uncharacterized pro | 0.701 | 0.195 | 0.383 | 1e-24 | |
| UNIPROTKB|F1LMP2 | 979 | Tf "Serotransferrin" [Rattus n | 0.809 | 0.221 | 0.346 | 3.1e-24 | |
| UNIPROTKB|Q9Y5M8 | 271 | SRPRB "Signal recognition part | 0.832 | 0.822 | 0.330 | 3.3e-24 | |
| UNIPROTKB|F1MLG1 | 271 | LOC100138613 "Uncharacterized | 0.809 | 0.800 | 0.337 | 2.3e-23 |
| TAIR|locus:2166409 AT5G05670 "AT5G05670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 190/259 (73%), Positives = 218/259 (84%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVXXXXXXXXXXX-QVFRRKKSTTIVL 69
E +E K E+W ++GIE++ +IPP QLY A V ++ RR KS T++L
Sbjct: 2 ENLEDLKILAEQWSHQGIEYLQKIPPNQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVLL 61
Query: 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129
+GL+GSGKTVLFYQLRDGS+HQGTVTSMEPNE TFVLHSE+TKKGKIKPVHLVDVPGHSR
Sbjct: 62 SGLTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSR 121
Query: 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189
LRPKL+EFLPQAA IVFVVDALEFLPNC AASEYLY+ILTN+ VVKKKIPVL+CCNKTDK
Sbjct: 122 LRPKLEEFLPQAAAIVFVVDALEFLPNCRAASEYLYEILTNANVVKKKIPVLLCCNKTDK 181
Query: 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 249
+TAHTKEFIRKQMEKEI+KLRASRSAVS AD+ NDFT+GI G+ FSF+ C NKV+VAEAS
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRSAVSTADIANDFTIGIEGEVFSFTHCSNKVTVAEAS 241
Query: 250 GLTGEISQVEQFIREQVKP 268
GLTGE Q+E FIRE +KP
Sbjct: 242 GLTGETIQIEDFIREYIKP 260
|
|
| TAIR|locus:2054022 AT2G18770 "AT2G18770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 183/259 (70%), Positives = 214/259 (82%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVLA 70
+ +E K E+W +G+EF+ +IPP QLY A V ++FRR KS T++L+
Sbjct: 2 DNLEDLKIVAEQWSKQGLEFVQKIPPPQLYTAIGVLLLATIWLLSIRLFRRTKSNTVLLS 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSR 129
GLSGSGKTVLFYQLRDGS+HQG VTSMEPNE TFVLH+E+ TKKGK+KPVHL+DVPGHSR
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSR 121
Query: 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189
L KL+E+LP+AA +VFVVDALEFLPN AASEYLYDILTN++V+K K PVL+CCNKTDK
Sbjct: 122 LISKLEEYLPRAAAVVFVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTDK 181
Query: 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 249
VTAHTKEFIRKQMEKEIDKLR SRSA+S AD+ NDFTLGI G+ FSFS CHNKV+VAEAS
Sbjct: 182 VTAHTKEFIRKQMEKEIDKLRVSRSAISTADIANDFTLGIEGEVFSFSHCHNKVTVAEAS 241
Query: 250 GLTGEISQVEQFIREQVKP 268
GLTGE QV++FIRE VKP
Sbjct: 242 GLTGETDQVQEFIREHVKP 260
|
|
| UNIPROTKB|Q5ZJA5 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 77/201 (38%), Positives = 110/201 (54%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVH 120
R ++L GL +GKT+LF +L G ++ T TS+ D+ ++ S KG V
Sbjct: 47 RSTRRAVLLLGLCDAGKTLLFARLLTGR-YRDTQTSIT---DSSAVYRVSNDKGT--NVT 100
Query: 121 LVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
L+D+PGH LR + L+ F A IVFVVD++ F +E+LY +L +STV+K
Sbjct: 101 LIDLPGHESLRLQFLERFKAAARAIVFVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPA 160
Query: 180 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTND-FTLGIPGQAFS 235
+LI CNK D A + + I++Q+EKE++ LR +RSA +A T LG G+ F
Sbjct: 161 LLIACNKQDVTMAKSAKLIQQQLEKELNTLRVTRSAAPTSLDASATGGPAQLGKKGKDFD 220
Query: 236 FSQCHNKVSVAEAS--GLTGE 254
FSQ KV E S G GE
Sbjct: 221 FSQLPMKVEFVECSARGSKGE 241
|
|
| MGI|MGI:102964 Srprb "signal recognition particle receptor, B subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 79/228 (34%), Positives = 117/228 (51%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A A+ ++ RK S VL GL SGKT+LF +L G
Sbjct: 28 LQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 86
Query: 90 HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVV 148
++ T TS+ D+ ++ + +G + L+D+PGH LR +L D F A +VFVV
Sbjct: 87 YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 141
Query: 149 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
D+ F +E+LY +L +S +K +LI CNK D A + + I++Q+EKE++
Sbjct: 142 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNT 201
Query: 209 LRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 253
LR +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 202 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 249
|
|
| RGD|1304698 Srprb "signal recognition particle receptor, B subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 79/228 (34%), Positives = 116/228 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A AV ++ RK S VL GL SGKT+LF +L G
Sbjct: 28 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 86
Query: 90 HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVV 148
++ T TS+ D+ ++ + +G + L+D+PGH LR + LD F A +VFVV
Sbjct: 87 YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVVFVV 141
Query: 149 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
D+ F +E+LY +L +S +K L+ CNK D A + + I++Q+EKE++
Sbjct: 142 DSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNT 201
Query: 209 LRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 253
LR +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 202 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 249
|
|
| DICTYBASE|DDB_G0278543 srpRB "signal recognition particle receptor beta subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 69/204 (33%), Positives = 110/204 (53%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K+ I + GLS +GKT L L + T TS+ N ++ +E+ KK + +
Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYI--TENKKK-----LPI 135
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
+DVPG+ + + L + L +A I++V+D F+ N + ++YLYDILTN +V +KKIPVL
Sbjct: 136 IDVPGNGKAKASLPKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVL 195
Query: 182 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFS 237
+ NK D + E ++ +E+E+D LR +R A + + + D LGI G F F
Sbjct: 196 VFNNKMDLDSTIDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFD 255
Query: 238 QCHNKV--SVAEASGLTGEISQVE 259
N V S AS GE+ +++
Sbjct: 256 HLPNDVQFSNGSASPSNGELKEID 279
|
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| UNIPROTKB|F1NL17 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 77/201 (38%), Positives = 110/201 (54%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVH 120
R ++L GL +GKT+LF +L G ++ T TS+ D+ ++ S KG V
Sbjct: 752 RSTRRAVLLLGLCDAGKTLLFARLLTGR-YRDTQTSIT---DSSAVYRVSNDKGT--NVT 805
Query: 121 LVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
L+D+PGH LR + L+ F A IVFVVD++ F +E+LY +L +STV+K
Sbjct: 806 LIDLPGHESLRLQFLERFKAAARAIVFVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPA 865
Query: 180 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTND-FTLGIPGQAFS 235
+LI CNK D A + + I++Q+EKE++ LR +RSA +A T LG G+ F
Sbjct: 866 LLIACNKQDVTMAKSAKLIQQQLEKELNTLRVTRSAAPTSLDASATGGPAQLGKKGKDFD 925
Query: 236 FSQCHNKVSVAEAS--GLTGE 254
FSQ KV E S G GE
Sbjct: 926 FSQLPMKVEFVECSARGSKGE 946
|
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| UNIPROTKB|F1LMP2 Tf "Serotransferrin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 79/228 (34%), Positives = 116/228 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A AV ++ RK S VL GL SGKT+LF +L G
Sbjct: 738 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 796
Query: 90 HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVV 148
++ T TS+ D+ ++ + +G + L+D+PGH LR + LD F A +VFVV
Sbjct: 797 YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVVFVV 851
Query: 149 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
D+ F +E+LY +L +S +K L+ CNK D A + + I++Q+EKE++
Sbjct: 852 DSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNT 911
Query: 209 LRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 253
LR +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 912 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 959
|
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| UNIPROTKB|Q9Y5M8 SRPRB "Signal recognition particle receptor subunit beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 78/236 (33%), Positives = 118/236 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89
+ Q PT L + AV + RR ++L GL SGKT+LF +L G
Sbjct: 30 LQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-L 88
Query: 90 HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVV 148
++ T TS+ D+ ++ + +G + L+D+PGH LR + L+ F A IVFVV
Sbjct: 89 YRDTQTSIT---DSCAVYRVNNNRGN--SLTLIDLPGHESLRLQFLERFKSSARAIVFVV 143
Query: 149 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
D+ F +E+LY +L +S +K LI CNK D A + + I++Q+EKE++
Sbjct: 144 DSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNT 203
Query: 209 LRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS--GLTGEISQVE 259
LR +RSA ++ T LG G+ F FSQ KV E S G G++ +
Sbjct: 204 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSAD 259
|
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| UNIPROTKB|F1MLG1 LOC100138613 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 77/228 (33%), Positives = 113/228 (49%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89
+ Q PT L + A+ + RR ++L GL SGKT+LF +L G
Sbjct: 30 LQQRDPTLLSVVVALLAVLLTLVFWKFIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-L 88
Query: 90 HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVV 148
++ T TS+ D+ + + +G + L+D+PGH LR + L+ F A IVFVV
Sbjct: 89 YRDTQTSIT---DSSAAYKVNNNRGT--NLTLIDLPGHESLRLQFLERFKASARAIVFVV 143
Query: 149 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
D+ F +E+LY +L +S +K LI CNK D A + + I++Q+EKEI+
Sbjct: 144 DSAAFQREVKDVAEFLYQVLLDSIGLKNTPSFLIACNKQDITMAKSAKLIQQQLEKEINT 203
Query: 209 LRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 253
LR +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 204 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 251
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0003016401 | hypothetical protein (258 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 268 | |||
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 8e-69 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-38 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-14 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 7e-13 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-11 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-11 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-08 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-07 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-07 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 4e-06 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 4e-06 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 5e-06 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 1e-05 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 4e-05 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 5e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 7e-05 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-04 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-04 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 3e-04 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 4e-04 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 4e-04 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 5e-04 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 7e-04 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 0.001 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 0.001 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 0.002 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 8e-69
Identities = 86/206 (41%), Positives = 114/206 (55%), Gaps = 13/206 (6%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
T++L G S SGKT LF +L G TVTS+EPN +F +S K K + LVDVP
Sbjct: 2 TVLLLGPSDSGKTALFTKLTTGKVRS-TVTSIEPNVASFYSNS-----SKGKKLTLVDVP 55
Query: 126 GHSRLRPKLDEFLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
GH +LR KL E+L + IVFVVD+ F N +E+LYDILT+ +K KIP+LI C
Sbjct: 56 GHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIAC 115
Query: 185 NKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQCH 240
NK D TA + I++ +EKEI+ LR SRS + D + D G+ F F Q
Sbjct: 116 NKQDLFTAKPAKKIKELLEKEINTLRESRSKSLESLDGDDGSKDTLGDKGGKDFEFDQLE 175
Query: 241 NKVSVAE--ASGLTGEISQVEQFIRE 264
+V E G I +E++I E
Sbjct: 176 GEVDFVEGSVKKSKGGIDDIEEWIDE 201
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-38
Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
+++AGL SGKT LF L G+ + TVTS EP+ K L
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKK-TVTSQEPS---AAYKYMLHKGFSFT---L 53
Query: 122 VDVPGHSRLRPKLDE---FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
+D PGH +LR KL E GIVFVVD+ F + +E+LY+IL+ + ++K I
Sbjct: 54 IDFPGHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGI 113
Query: 179 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSEADVTND--FTLGIPGQAFS 235
+LI CNK + TA + I++ +EKEI+ +R RS A+S D ++D LG G+ F
Sbjct: 114 DILIACNKQESFTARPPKKIKQALEKEINTIRERRSKALSGLDGSDDLSAVLGKKGKDFK 173
Query: 236 FSQCHNKV 243
F Q V
Sbjct: 174 FDQLEGNV 181
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-14
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNED---TFVLHSESTKKGKI 116
T IV+ G G+GKT L D +S+ T + S + +
Sbjct: 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED 67
Query: 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 176
VHL PG R + + A G + +VD+ P A E + D LT +
Sbjct: 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR--PITFHA-EEIIDFLT----SRN 120
Query: 177 KIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206
IPV++ NK D A E IR+ ++ E+
Sbjct: 121 PIPVVVAINKQDLFDALPPEKIREALKLEL 150
|
Length = 187 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 7e-13
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK IV GL +GKT L + L+D Q V ++ P + + G +K
Sbjct: 17 KKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI-------GNVK-FTT 67
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPV 180
D+ GH + R ++ P+ GIVF+VDA + P S E L +L + + P+
Sbjct: 68 FDLGGHEQARRVWKDYFPEVDGIVFLVDAAD--PERFQESKEELDSLLNDEELANV--PI 123
Query: 181 LICCNKTDKVTAHTKEFIRKQM 202
LI NK DK A ++E +R+ +
Sbjct: 124 LILGNKIDKPGAVSEEELREAL 145
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 68 VLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124
V+ G G GK+ L L G T+ +P+ L + LVD
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELD------KGKVKLVLVDT 54
Query: 125 PGH-----SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
PG L A I+ VVD+ SE +L + K+ IP
Sbjct: 55 PGLDEFGGLGREELARLLLRGADLILLVVDS------TDRESEEDAKLLILRRLRKEGIP 108
Query: 180 VLICCNKTDKVTAHTKEFIRKQMEKE 205
+++ NK D + E + + E
Sbjct: 109 IILVGNKIDLLEEREVEELLRLEELA 134
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSE 109
L +L ++F K I++ GL +GKT + Y+L+ G T T+ N E
Sbjct: 2 LSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTI---GFN-------VE 51
Query: 110 STKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 169
+ +K + DV G LRP + P ++FVVD+ + A E L+ +L
Sbjct: 52 TVTYKNVK-FTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRD-RIEEAKEELHALLN 109
Query: 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ P+LI NK D A ++ IR+ +
Sbjct: 110 EEEL--ADAPLLILANKQDLPGAMSEAEIRELLG 141
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L+ G V + P T + E+ + +K + DV G
Sbjct: 2 ILMLGLDGAGKTTILYKLK-----LGEVVTTIP---TIGFNVETVEYKNVK-FTVWDVGG 52
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
++RP + G++FVVD+ E + A L+ +L + K P+LI
Sbjct: 53 QDKIRPLWKHYYENTDGLIFVVDSSDRERI---EEAKNELHKLLNEEEL--KGAPLLILA 107
Query: 185 NKTDKVTAHTKEFIRKQME 203
NK D A T+ + + +
Sbjct: 108 NKQDLPGALTESELIELLG 126
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 15/143 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRD-----GSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
IV+ G GK+ L +L GT +V + GK +L
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGT-------TRNYVTTVI-EEDGKTYKFNL 55
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
+D G + + V D + + + E + + + +P++
Sbjct: 56 LDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIH--HAESGVPII 113
Query: 182 ICCNKTDKVTAHTKEFIRKQMEK 204
+ NK D A K + K
Sbjct: 114 LVGNKIDLRDAKLKTHVAFLFAK 136
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Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I L GL SGKT L + G P T + KG + + + D+ G
Sbjct: 2 ITLVGLQNSGKTTLVNVIASG----QFSEDTIP---TVGFNMRKVTKGNVT-IKVWDLGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R R + + IV+VVDA + A L+D+L ++ + IP+L+ NK
Sbjct: 54 QPRFRSMWERYCRGVNAIVYVVDAADRE-KLEVAKNELHDLLEKPSL--EGIPLLVLGNK 110
Query: 187 TDKVTAHTKEFIRKQM 202
D A + + + +QM
Sbjct: 111 NDLPGALSVDELIEQM 126
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-07
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 8/147 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
IV+ G G GKT L +L +G ++ + + IK L D G
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNL---DPAKTIEPYRRNIKLQ-LWDTAG 63
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R E+ A GI+ V D + +E + L + +P+L+ NK
Sbjct: 64 QEEYRSLRPEYYRGANGILIVYD-STLRESSDELTEEWLEEL--RELAPDDVPILLVGNK 120
Query: 187 TDKVTAH-TKEFIRKQMEKEIDKLRAS 212
D + E I Q+ +E+ L +
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLA 147
|
Length = 219 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-06
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
K I+ GL +GKT L + L++ + HQ T P SE G IK
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPT---QHPT-------SEELAIGNIK-F 63
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
D+ GH + R ++ P+ GIV++VDA + + E D L + + +P
Sbjct: 64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRE--LDALLSDEEL-ATVP 120
Query: 180 VLICCNKTDKVTAHTKEFIR 199
LI NK D A +++ +R
Sbjct: 121 FLILGNKIDAPYAASEDELR 140
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
I++ GL SGKT + QL+ + + T + ES KKG + D+
Sbjct: 1 NILVLGLDNSGKTTIINQLKPSNAQSQNIVP------TVGFNVESFKKGNLS-FTAFDMS 53
Query: 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 185
G + R + + GI+FV+D+ + L A E L +L + + ++IP+L N
Sbjct: 54 GQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDE-LELLLNHPDIKHRRIPILFYAN 112
Query: 186 KTDKVTAHTKEFI 198
K D A T I
Sbjct: 113 KMDLPDALTAVKI 125
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++L GL +GK+ L Y+L+ H VT++ T + E + K + + DV G
Sbjct: 2 VLLLGLDSAGKSTLLYKLK----HAELVTTIP----TVGFNVEMLQLEKHLSLTVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++R +L G+V+VVD+ + + E L IL N + K +PV++ NK
Sbjct: 54 QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKE-LKHILKNEHI--KGVPVVLLANK 110
Query: 187 TDKVTAHTKEFIRKQMEKEIDKLRASR 213
D A T E I ++ ++ K + R
Sbjct: 111 QDLPGALTAEEITRRF--KLKKYCSDR 135
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+++ GL +GKT Q + + + T L+ + + GK + + D+ G
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKAR-LMFWDLGG 60
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
LR D++ ++ G+++V+D+ E +A ++ + N+ + + +P+L+
Sbjct: 61 QEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA----FEKVINNEAL-EGVPLLVLA 115
Query: 185 NKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216
NK D A + I++ + I + V
Sbjct: 116 NKQDLPDALSVAEIKEVFDDCIALIGRRDCLV 147
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 41/166 (24%)
Query: 55 LLQVFRRKKSTT-----IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
LL + R+ K ++ I+L GL +GKT + QL +ED + H
Sbjct: 1 LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQL--------------ASED--ISHIT 44
Query: 110 STKKGKIKPV-------HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNC 157
T+ IK V ++ D+ G ++RP + +++V+D+ E
Sbjct: 45 PTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFE----- 99
Query: 158 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
A + L ++L +PVL+ NK D +TA E + + +
Sbjct: 100 -EAGQELVELLEE--EKLAGVPVLVFANKQDLLTAAPAEEVAEALN 142
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
IV+ GL +GKT + Y+L+ + TV + N + + S K H DV G
Sbjct: 6 IVMLGLDSAGKTTVLYRLK-FNEFVNTVPTKGFNTEKIKV---SLGNAKGVTFHFWDVGG 61
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
+LRP + GIVFVVD+++ A +E L+ I S + +PVL+ NK
Sbjct: 62 QEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTE-LHKITKFSE--NQGVPVLVLANK 118
Query: 187 TD 188
D
Sbjct: 119 QD 120
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-05
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+V+ G GSGK+ L QL G +E DT + + +++ D G
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEF---PPEPLEIQGDTLAVDTLEVDGDTGL-LNIWDFGG 57
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDI---LTNSTVVKKKIPVLI 182
L+ + F+ A I+ V D S + + L N + KIPV++
Sbjct: 58 REELKFEHIIFMKWADAILLVYD------LTDRESLNEVSRLIAWLPNLRKLGGKIPVIL 111
Query: 183 CCNKT 187
NK
Sbjct: 112 VGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVTSMEPNEDTFVLHSESTK 112
L +F +K +++ GL +GKT + YQ G T+ S N + V
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGS---NVEEIV------- 55
Query: 113 KGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 170
K + + D+ G LR + + ++ V+D+ + E LY +L +
Sbjct: 56 ---YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD-RERLPLTKEELYKMLAH 111
Query: 171 STVVKKKIPVLICCNKTD 188
+ +K +L+ NK D
Sbjct: 112 EDL--RKAVLLVLANKQD 127
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT L + L + + V T +S + + L+++ G
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP-------TTGFNSVAIPTQDAI-MELLEIGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
LR +L + G++FVVD+ E LP A + L+ +L + +P+++
Sbjct: 54 SQNLRKYWKRYLSGSQGLIFVVDSADSERLP---LARQELHQLLQHPPD----LPLVVLA 106
Query: 185 NKTDKVTAHTKEFIRKQMEKE 205
NK D A + + I K++E E
Sbjct: 107 NKQDLPAARSVQEIHKELELE 127
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL +GKT + Y+L+ G +VT++ T + E+ I +
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGE----SVTTIP----TIGFNVETVTYKNIS-FTV 61
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G ++RP + G++FVVD+
Sbjct: 62 WDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L G V + P T + E+ +K + D+ G
Sbjct: 2 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLK-FQVWDLGG 52
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
+ +RP + I++VVD+ + + L+ +L + K +L+ NK
Sbjct: 53 QTSIRPYWRCYYSNTDAIIYVVDSTD-RDRLGISKSELHAMLEEEEL--KDAVLLVFANK 109
Query: 187 TD 188
D
Sbjct: 110 QD 111
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 30/141 (21%)
Query: 66 TIVLAGLSGSGKTVLFYQL--------RDGSTHQGTVTSMEPNEDTFVLHSEST------ 111
I L G SGSGKT L L R G G S E+ S T
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLE 60
Query: 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 171
G ++L+D PG +F+ + + VDA + A S ++ T
Sbjct: 61 WNG--HKINLIDTPG-------YADFVGETLSALRAVDAALIV--VEAQSG--VEVGTEK 107
Query: 172 T---VVKKKIPVLICCNKTDK 189
+ K+P +I NK D+
Sbjct: 108 VWEFLDDAKLPRIIFINKMDR 128
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 53 LLLLQVFRR---KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
L L F+ KK I++ GL +GKT + Y+L+ G VT++ T + E
Sbjct: 3 LWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGE----VVTTIP----TIGFNVE 54
Query: 110 STKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
+ + +K + DV G +LRP + G++FVVD+
Sbjct: 55 TVEYKNLK-FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94
|
Length = 182 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 7e-04
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG 114
L KK I++ GL +GKT + Y+L+ G VT++ T + E+ +
Sbjct: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYK 59
Query: 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
I + DV G ++RP + G++FVVD+
Sbjct: 60 NIS-FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94
|
Length = 181 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Query: 121 LVDVPGHSRLRPKLDEFLPQAAG--------IVFVVDALEFLPNCSAASEYLYDILTNST 172
VD PG + + L E + +AA I+FVVDA E E++ + L
Sbjct: 58 FVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE---GWGPGDEFILEQLK--- 111
Query: 173 VVKKKIPVLICCNKTDKVTAHTK-----EFIRKQME-KEI 206
K K PV++ NK DKV T F++K + KEI
Sbjct: 112 --KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEI 149
|
Length = 298 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL +GKT + Y+L+ G + VT++ T + E+ +K ++
Sbjct: 7 NKEMRILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVK-FNV 57
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G ++RP + G++FVVD+
Sbjct: 58 WDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 28/135 (20%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-MEPNEDTFVLHSESTKKGKIKPVHLVDV 124
T++ GL +GKT L L V + L K + V + D+
Sbjct: 1 TLLTVGLDNAGKTTLVSAL--QGEIPKKVAPTVGFTPTKLRL-------DKYE-VCIFDL 50
Query: 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-------EYLYDILTNSTVVKKK 177
G + R + +A G+VFVVD S+ E L ++L + V K
Sbjct: 51 GGGANFRGIWVNYYAEAHGLVFVVD--------SSDDDRVQEVKEILRELLQHPRVSGK- 101
Query: 178 IPVLICCNKTDKVTA 192
P+L+ NK DK A
Sbjct: 102 -PILVLANKQDKKNA 115
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 100.0 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.97 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.97 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.97 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.96 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.96 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.96 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.96 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.96 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.96 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.96 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.96 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.96 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.96 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.96 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.95 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.95 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.95 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.95 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.95 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.95 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.95 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.95 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.95 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.95 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.95 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.95 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.95 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.95 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.95 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.95 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.95 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.95 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.95 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.95 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.95 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.95 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.95 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.95 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.95 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.95 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.95 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.95 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.95 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.95 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.95 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.95 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.95 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.95 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.95 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.95 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.95 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.95 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.95 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.95 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.95 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.95 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.95 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.95 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.95 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.94 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.94 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.94 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.94 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.94 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.94 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.94 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.94 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.94 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.94 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.94 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.94 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.94 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.94 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.94 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.94 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.94 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.94 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.94 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.94 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.94 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.94 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.94 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.94 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.94 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.94 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.94 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.94 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.94 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.94 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.93 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.93 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.93 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.93 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.93 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.93 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.93 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.93 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.93 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.93 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.93 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.93 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.93 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.93 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.93 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.93 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.93 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.93 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.93 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.92 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.92 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.92 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.92 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.92 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.92 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.91 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.91 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.91 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.9 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.9 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.9 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.9 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.9 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.9 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.9 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.9 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.9 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.89 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.89 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.89 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.89 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.89 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.89 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.89 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.89 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.88 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.88 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.88 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.88 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.87 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.87 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.87 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.87 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.87 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.87 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.87 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.87 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.87 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.86 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.86 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.86 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.86 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.86 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.86 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.86 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.86 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.86 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.86 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.86 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.86 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.86 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.86 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.86 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.86 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.85 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.85 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.85 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.85 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.85 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.85 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.84 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.84 | |
| PTZ00099 | 176 | rab6; Provisional | 99.84 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.83 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.83 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.83 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.83 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.83 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.83 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.82 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.82 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.82 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.82 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.82 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.82 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.81 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.81 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.81 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.81 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.81 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.81 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.81 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.8 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.8 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.8 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.8 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.8 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.8 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.79 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.79 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.79 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.78 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.78 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.78 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.78 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.78 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.78 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.77 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.77 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.77 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.77 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.76 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.75 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.75 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.75 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.75 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.75 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.75 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.74 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.74 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.74 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.74 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.74 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.73 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.73 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.72 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.72 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.72 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.71 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.71 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.71 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.71 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.71 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.7 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.7 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.69 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.69 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.69 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.68 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.67 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.66 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.66 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.66 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.65 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.64 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.64 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.64 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.64 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.61 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.6 | |
| PRK13768 | 253 | GTPase; Provisional | 99.59 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.58 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.58 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.58 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.58 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.57 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.56 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.54 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.54 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.53 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.52 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.51 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.51 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.49 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.48 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.48 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.47 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.47 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.46 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.45 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.45 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.45 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.44 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.43 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.39 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.38 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.37 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.35 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.34 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.33 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.32 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.31 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.3 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.3 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.28 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.28 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.28 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.27 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.27 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.23 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.22 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.19 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.19 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.19 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.18 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.18 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.17 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.16 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.14 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.14 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.13 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.13 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.12 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.12 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.05 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.05 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.02 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.98 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 98.97 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.94 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.94 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.89 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.88 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.87 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 98.87 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.82 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.82 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.81 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.81 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.78 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.74 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.72 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.71 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.68 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.68 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.68 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.66 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.66 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.63 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.61 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.61 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.6 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.56 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.55 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.55 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.54 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.53 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.53 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.53 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.52 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.52 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.5 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.5 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.49 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.48 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.48 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.48 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.43 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.43 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.42 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.41 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.41 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.41 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.4 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.4 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.35 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.34 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.33 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.33 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.32 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.31 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.29 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.27 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.26 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.22 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.21 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.2 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.19 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.18 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.18 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.16 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.12 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.12 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.12 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.05 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.05 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.03 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.02 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.02 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.01 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.0 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.99 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.96 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.95 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.92 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.91 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.89 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 97.88 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.87 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.87 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.84 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.83 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.81 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.79 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.72 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.7 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.69 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.67 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.67 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.65 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.64 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.61 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.6 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.49 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.48 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.48 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.47 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.45 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.43 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.42 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.41 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.38 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.38 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.37 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.36 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.29 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.29 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.23 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.23 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.2 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.17 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.12 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.08 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.06 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.05 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.99 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.98 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.93 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.92 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.91 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 96.89 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.84 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 96.82 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.82 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.8 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.76 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.73 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.72 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.67 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.6 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.6 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 96.6 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.57 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.56 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 96.55 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.55 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 96.54 | |
| PF02263 | 260 | GBP: Guanylate-binding protein, N-terminal domain; | 96.54 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.52 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.5 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.49 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.49 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.48 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.47 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.46 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 96.45 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.43 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.43 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.43 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.41 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 96.41 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 96.39 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 96.37 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 96.37 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.36 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.36 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.35 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.35 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.34 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.34 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.33 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.33 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 96.31 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 96.31 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 96.31 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.3 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.29 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.25 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.24 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 96.23 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.22 |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=227.01 Aligned_cols=226 Identities=57% Similarity=0.816 Sum_probs=197.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc
Q 024385 32 NQIPPTQLYIACAVLLLTTALL-LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES 110 (268)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (268)
.+.+|...+..+...++..... +.....++.....|+++|+.+||||+|+.+|..+.. +.++++++|+.+.+.+..
T Consensus 5 ~~~~p~~l~~~i~~lli~~~~~~~~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~-~~TvtSiepn~a~~r~gs-- 81 (238)
T KOG0090|consen 5 QQIDPTLLAVIITVLLILTILLFLKLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSH-RGTVTSIEPNEATYRLGS-- 81 (238)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcEEEEecCCCCceeeeeehhcCCc-cCeeeeeccceeeEeecC--
Confidence 4566777777666655555444 555666667778999999999999999999999965 447889999998887765
Q ss_pred ccCCceeeEEEEeCCCCCCchhhHhhhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 111 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
-.++++|.|||.+.+.....|+. .+.++|||+|+...........+++.+++.........+|++|++||.
T Consensus 82 ------~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKq 155 (238)
T KOG0090|consen 82 ------ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQ 155 (238)
T ss_pred ------cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecch
Confidence 24799999999999999888887 789999999999876789999999999998876566899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhh---ccccccccCcccCCCCCCCeeeccCC-ceeEEEEeeeccCCchhHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKLRASRS---AVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGEISQVEQFIR 263 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~f~~~~-~~~~~~~~Sa~~g~i~~l~~~l~ 263 (268)
|+..+.+.+.+++.++++++.++.+++ +++.++..+...++..+.+|.|+++. .++.|.++|+++|++++|.+||+
T Consensus 156 Dl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~~i~~~~~wi~ 235 (238)
T KOG0090|consen 156 DLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTGEIDQWESWIR 235 (238)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcCChHHHHHHHH
Confidence 999999999999999999999999999 57788889999999999999999998 89999999999999999999999
Q ss_pred hhc
Q 024385 264 EQV 266 (268)
Q Consensus 264 ~~~ 266 (268)
+.+
T Consensus 236 ~~l 238 (238)
T KOG0090|consen 236 EAL 238 (238)
T ss_pred HhC
Confidence 864
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=208.33 Aligned_cols=196 Identities=46% Similarity=0.641 Sum_probs=154.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC-CE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA-AG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~-d~ 143 (268)
++|+++|++|||||||+++|..+.+... .+++.+....+.... .+....+.+||||||.+++..+..+++.+ ++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~----~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~ 75 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNS----EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKG 75 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeec----CCCCceEEEEECCCCHHHHHHHHHHHhccCCE
Confidence 4799999999999999999999877543 334444443332221 12236799999999999999999999998 99
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc----
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA---- 219 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 219 (268)
+|||+|+.+..+++.....++..++........++|+++|+||+|+..+.+.+.+++.++++++.++.+++..-..
T Consensus 76 vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~ 155 (203)
T cd04105 76 IVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGD 155 (203)
T ss_pred EEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999996456788888888876643322368999999999999999999999999999999999998763211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 265 (268)
+.......+..+..|.|+++..++.|++||++.++ ++.|.+||.++
T Consensus 156 ~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~~ 203 (203)
T cd04105 156 EGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDEL 203 (203)
T ss_pred cccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhhC
Confidence 11111222445678999999999999999999987 99999999874
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=199.62 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=134.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|..++|||||+-|+..+.|... ..++++.-.+...+..++..+++.||||+|+++|.++.+.|++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA 78 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA 78 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCC
Confidence 4578999999999999999999999999664 334444445555566677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++|+|||+++. +||..+..|+.++.++.. +++-+.+||||+||...+.. ++.....+
T Consensus 79 ~AAivvYDit~~-~SF~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe---------------- 138 (200)
T KOG0092|consen 79 NAAIVVYDITDE-ESFEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAE---------------- 138 (200)
T ss_pred cEEEEEEecccH-HHHHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHH----------------
Confidence 999999999998 899999999999999864 77778899999999874322 22222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....|+|+|||||. +++++..|.+.+|+
T Consensus 139 --------------------~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 139 --------------------SQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred --------------------hcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 345689999999998 99999999999875
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=196.66 Aligned_cols=162 Identities=19% Similarity=0.290 Sum_probs=132.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||+|+.|+..+.|.+.+..|++. ......+.++|+.+.++||||+||++|+....+|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGV----Df~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGV----DFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeee----EEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34679999999999999999999999998777766543 33344467788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH-HHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+++|+|||+++. +||..+..|+.++..+.. .++|.++||||+|+........- .+.+
T Consensus 83 hGii~vyDiT~~-~SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~f------------------ 140 (205)
T KOG0084|consen 83 HGIIFVYDITKQ-ESFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEF------------------ 140 (205)
T ss_pred CeEEEEEEcccH-HHhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHH------------------
Confidence 999999999998 899999999999998865 78999999999999876533211 1111
Q ss_pred ccCcccCCCCCCCeeeccCCceeE-EEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..+.+ |+|+|||++. +++.+..|...+
T Consensus 141 ----------------a~-~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 141 ----------------AD-ELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ----------------HH-hcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 11 22345 9999999987 888887776654
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=193.44 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=134.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+|++++|+.+|||||||+|+..+.|... +.++++.......+.+.|..+++++|||+||++|+.+.+.|++++.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~----YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccc----ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 458999999999999999999999998554 4555666666666778888999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH-HHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK-QMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|||.++. .+|+...+|+.+++..... .++-+++||||.||.+.+....... ...+
T Consensus 97 vaviVyDit~~-~Sfe~t~kWi~dv~~e~gs--~~viI~LVGnKtDL~dkrqvs~eEg~~kAk----------------- 156 (221)
T KOG0094|consen 97 VAVIVYDITDR-NSFENTSKWIEDVRRERGS--DDVIIFLVGNKTDLSDKRQVSIEEGERKAK----------------- 156 (221)
T ss_pred EEEEEEecccc-chHHHHHHHHHHHHhccCC--CceEEEEEcccccccchhhhhHHHHHHHHH-----------------
Confidence 99999999998 8999999999999987642 3577889999999987654322211 1111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.|+++||++|. +.+++.-|...++
T Consensus 157 ------------------el~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 157 ------------------ELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred ------------------HhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 334589999999998 9999988887664
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=195.53 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=121.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
.|+++|..|||||||++++..+.|...+.++ .+.......+..++..+.+.+|||+|+++|+..+..|++++|++|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T----i~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iI 77 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG----VGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 77 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc----ceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEE
Confidence 6899999999999999999999886544333 332222333556777789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. ++++.+..|+..+.... ..+.|+++|+||+|+........ +..++
T Consensus 78 lVfDvtd~-~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~~~~v~~--~~~~~--------------------- 130 (202)
T cd04120 78 LVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREISR--QQGEK--------------------- 130 (202)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCH--HHHHH---------------------
Confidence 99999998 88999999887665442 26799999999999964332110 01111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
|.+...++.|++|||++|. |+++++||.+.+
T Consensus 131 ----------~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 131 ----------FAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ----------HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0100123579999999999 999999998754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=192.73 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=123.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...||+++|..|||||||+.++..+.+...+.++ .+.......+..++..+.+.+|||+|+++|...+..|++.+|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t----~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad 80 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYN----MGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQ 80 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----ceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 4579999999999999999999998775433322 222222333455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||+++. .+++.+..|+..+.... ++.|++||+||+|+..... .++..+.. +
T Consensus 81 ~illVfD~t~~-~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a----~------------- 138 (189)
T cd04121 81 GIILVYDITNR-WSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYA----E------------- 138 (189)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHH----H-------------
Confidence 99999999998 89999999999987653 6899999999999965332 22211111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. +++++++|.+.
T Consensus 139 -------------------~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 139 -------------------RNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 224589999999998 99999999865
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=189.55 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|.+|+|||||+.++..+.|...+.+++... +...+..++..+.+.+|||+|+++++.....+++.+|++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~-----~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-----FSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVF 76 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceee-----eEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEE
Confidence 489999999999999999999999866555554321 222345567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH----HHHHHHHHHHHHHHhhhccccc
Q 024385 145 VFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF----IRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|+|||.++. ++++.+ ..|+..+.... .+.|+++||||+|+.+...... .+....++.+.
T Consensus 77 ilvyd~~~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~----------- 140 (176)
T cd04133 77 VLAFSLISR-ASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE----------- 140 (176)
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-----------
Confidence 999999998 889998 67888876543 5799999999999965321000 00000111111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
++...+...|+||||++|. |+++++.+.+.
T Consensus 141 ----------------~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 141 ----------------LRKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ----------------HHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 1111222269999999999 99999998874
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=186.61 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=135.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
++.-.||+++|++|+|||||+|+++..+|...+..+ ++....+.++.++++.+.++||||+|+++|.++.-.++++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRg 81 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRG 81 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecC
Confidence 345689999999999999999999999986655544 4445566778888998999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc-CCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|||+++. .+++.+..|-.+++.++... +...|+||+|||+|+....+...-.+....
T Consensus 82 aDcCvlvydv~~~-~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~--------------- 145 (210)
T KOG0394|consen 82 ADCCVLVYDVNNP-KSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT--------------- 145 (210)
T ss_pred CceEEEEeecCCh-hhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH---------------
Confidence 9999999999998 89999999999999987743 367899999999999764322111111111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|....++++|+|+|||.+- +++.++.+.+.
T Consensus 146 ----------------WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 146 ----------------WCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred ----------------HHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 3333678999999999986 77777666543
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=187.97 Aligned_cols=163 Identities=22% Similarity=0.349 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++..+.+.. +.++ .+..... .... .+.+.+|||||+.+++..+..|++.+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t----~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~a 81 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPT----IGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNT 81 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCc----cccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCC
Confidence 457899999999999999999998777632 2333 2221111 1222 27899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ .+++...+++..++..... .+.|++||+||+|+....+.+++.+.+.. .
T Consensus 82 d~ii~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~-------------- 142 (175)
T smart00177 82 QGLIFVVDSNDR-DRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDAMKAAEITEKLGL--H-------------- 142 (175)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccCCCHHHHHHHhCc--c--------------
Confidence 999999999997 7799999999888764321 57899999999999765544433332210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. .....+.++++||++|+ ++++++||.+.+.
T Consensus 143 --------------~-~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 143 --------------S-IRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred --------------c-cCCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 0 00234678899999999 9999999988753
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=187.72 Aligned_cols=159 Identities=22% Similarity=0.378 Sum_probs=119.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++..+.+.. +.++. +..... ... ..+.+.+|||||+++++..+..+++.+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~----g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a 77 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTV----GFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGT 77 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCc----ccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccC
Confidence 467899999999999999999998876632 22222 211111 111 237899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++.....++.+++..... .++|+++|+||+|+......+++.+.+.
T Consensus 78 ~~ii~v~D~t~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~------------------ 136 (168)
T cd04149 78 QGLIFVVDSADR-DRIDEARQELHRIINDREM--RDALLLVFANKQDLPDAMKPHEIQEKLG------------------ 136 (168)
T ss_pred CEEEEEEeCCch-hhHHHHHHHHHHHhcCHhh--cCCcEEEEEECcCCccCCCHHHHHHHcC------------------
Confidence 999999999997 7799999998888764321 5789999999999976544444333321
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
++.. ...+.++++||++|+ ++++++||.+
T Consensus 137 --------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 137 --------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --------------CCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 0010 234579999999999 9999999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=191.10 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=121.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|+.|||||||+.++..+.|...+.++... . +...+..++..+.+.+|||+|+++|+..+..|++.+|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~----~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~ 77 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD----N-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNV 77 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe----e-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCE
Confidence 479999999999999999999999886555544432 1 22234456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|||+++. .+++.+.. |+..+.... .++|+++|+||+|+.......+...... ...+..++.
T Consensus 78 ~ilvydit~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~---------~~~v~~~~~- 142 (191)
T cd01875 78 FIICFSIASP-SSYENVRHKWHPEVCHHC----PNVPILLVGTKKDLRNDADTLKKLKEQG---------QAPITPQQG- 142 (191)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEEeChhhhcChhhHHHHhhcc---------CCCCCHHHH-
Confidence 9999999998 88999974 666555432 5799999999999965322111000000 000000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
-.|+...+.++|++|||++|+ ++++++++.+.+
T Consensus 143 -----------~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 143 -----------GALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred -----------HHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 001111233589999999998 999999998753
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=188.99 Aligned_cols=161 Identities=22% Similarity=0.382 Sum_probs=121.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++..+.+.. .. |+.+.... .+... .+.+.+||+||+++++..+..|++.+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~----pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a 85 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-cc----CCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccC
Confidence 467899999999999999999998877632 22 33322111 12222 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. +++.....++..++..... .+.|++||+||+|+......+++.+.+.
T Consensus 86 ~~iI~V~D~s~~-~s~~~~~~~l~~~l~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~l~------------------ 144 (181)
T PLN00223 86 QGLIFVVDSNDR-DRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLG------------------ 144 (181)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHHHHhcCHhh--CCCCEEEEEECCCCCCCCCHHHHHHHhC------------------
Confidence 999999999997 7788888888887764322 5799999999999976655443333221
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+..+ ...+.+++|||++|+ ++++++||.+.+
T Consensus 145 --------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred --------------ccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1111 234567899999999 999999998865
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=190.65 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=121.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+||+++|++|||||||++++.++.+...+.++. +.......+..+ +..+.+.+|||||+++++..+..+++.+|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~----~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~ 76 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI----GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVG 76 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce----eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCE
Confidence 489999999999999999999988754433333 222222233444 566889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCC--CCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVT--AHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|+|||+++. ++++.+..|+..+...... ...++|+++|+||+|+.. ....+++.+....
T Consensus 77 ~ilv~D~t~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---------------- 139 (201)
T cd04107 77 AIIVFDVTRP-STFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE---------------- 139 (201)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----------------
Confidence 9999999997 8899998888777543211 126789999999999973 2233322222111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...+++|||++|. ++++++||.+.+
T Consensus 140 -------------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 140 -------------------NGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred -------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122479999999998 999999998764
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=184.73 Aligned_cols=157 Identities=20% Similarity=0.384 Sum_probs=115.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.+.. +.++...... .... ..+.+.+|||||++++...+..+++++|++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~------~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~ 71 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE------TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE------EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 379999999999999999998877642 3333222111 1112 237899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|||+|+++. .++.....++..++..... .+.|+++++||+|+......+++.+.+. ++.
T Consensus 72 i~v~D~~~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~---------------- 130 (159)
T cd04150 72 IFVVDSNDR-ERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNAMSAAEVTDKLG--LHS---------------- 130 (159)
T ss_pred EEEEeCCCH-HHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCCCCHHHHHHHhC--ccc----------------
Confidence 999999997 7789998888888754321 4689999999999965444333222211 000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+ ....+.+++|||++|+ ++++++||.+
T Consensus 131 -----------~--~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 131 -----------L--RNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred -----------c--CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 0 0234578999999999 9999999975
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=186.57 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=132.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||+++.++..+.|......++ +.......+..+|..+.+++|||+|+++|+.....|+++|
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi----GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI----GIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE----EEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 356799999999999999999999999866555544 3344444567788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+++++|||.++. .+|+.+..|+..+-.+.. .++|+++||||+|+...+.+ .+.-+.+..
T Consensus 86 ~gi~LvyDitne-~Sfeni~~W~~~I~e~a~---~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~---------------- 145 (207)
T KOG0078|consen 86 MGILLVYDITNE-KSFENIRNWIKNIDEHAS---DDVVKILVGNKCDLEEKRQVSKERGEALAR---------------- 145 (207)
T ss_pred CeeEEEEEccch-HHHHHHHHHHHHHHhhCC---CCCcEEEeeccccccccccccHHHHHHHHH----------------
Confidence 999999999997 899999999999988864 69999999999999874432 222233332
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.|+|+|||+|. |++.+-.|.+.+
T Consensus 146 -------------------e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 146 -------------------EYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred -------------------HhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 346799999999998 888877776644
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=187.35 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=121.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|.+|||||||++++..+.+.....++.. ..+...+..++..+.+.+|||||+++++..+..+++.+|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 76 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-----DAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEG 76 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-----ceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCE
Confidence 46899999999999999999999988654433332 1122234556777889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||+++. .++..+..|+..+.+... ..++|+++|+||+|+......... ......+
T Consensus 77 ~ilv~d~~~~-~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~~--~~~~~a~---------------- 135 (172)
T cd04141 77 FIICYSVTDR-HSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTTE--EGRNLAR---------------- 135 (172)
T ss_pred EEEEEECCch-hHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCHH--HHHHHHH----------------
Confidence 9999999998 889999887766654321 267999999999998654322110 0111001
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |+++++||.+.+
T Consensus 136 ----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 136 ----------------EFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ----------------HhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 224689999999998 999999998654
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=184.83 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+.....++..... ....+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCA 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEE----EEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEE
Confidence 4899999999999999999998876544444333222 222223345558999999999999988888999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++..+..|+..+.... .++|+++|+||+|+.......+.. .+.+
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piiiv~nK~Dl~~~~~~~~~~-~~~~-------------------- 130 (166)
T cd00877 77 IIMFDVTSR-VTYKNVPNWHRDLVRVC----GNIPIVLCGNKVDIKDRKVKAKQI-TFHR-------------------- 130 (166)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhcccccCCHHHH-HHHH--------------------
Confidence 999999997 78999999988887653 489999999999997332211111 1110
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 131 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 131 ---------------KKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ---------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 234579999999999 999999998764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=183.51 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=119.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+.....++. +.. +......++..+.+.+|||||+++++..+..|++.+|++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~ 76 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 76 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc----hhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEE
Confidence 589999999999999999999988754333332 211 222344556667889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .++..+..|+..+.+... ..+.|+++|+||+|+........ ......+
T Consensus 77 i~v~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~----------------- 133 (162)
T cd04138 77 LCVFAINSR-KSFEDIHTYREQIKRVKD--SDDVPMVLVGNKCDLAARTVSSR---QGQDLAK----------------- 133 (162)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccceecHH---HHHHHHH-----------------
Confidence 999999997 778888888888876532 25889999999999975321111 1111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 134 ---------------SYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ---------------HhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 123479999999998 999999998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=185.41 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+.. +.++...... ..... .+.+.+|||||+.+++..+..+++.+|+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~------~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii 71 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE------TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVV 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE------EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEE
Confidence 68999999999999999999886532 2333222111 11222 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
||+|+++. +++.....|+..+++.... .+.|+++|+||+|+......+++.+.+.
T Consensus 72 ~V~D~s~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------- 126 (169)
T cd04158 72 FVVDSSHR-DRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAGALSVEEMTELLS---------------------- 126 (169)
T ss_pred EEEeCCcH-HHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCcccCCCHHHHHHHhC----------------------
Confidence 99999997 7899999999999865321 4689999999999976544444333321
Q ss_pred cCCCCCCCeeecc--CCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 226 TLGIPGQAFSFSQ--CHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 226 ~~~~~~~~f~f~~--~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.+ ....+.+++|||++|. ++++++||.+.+.
T Consensus 127 ----------~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 127 ----------LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred ----------CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 000 0224578999999999 9999999998654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=185.43 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=121.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
++||+++|.+|||||||++++..+.+.....+ +.+.. +...+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDP----TIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQG 75 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCE
Confidence 46899999999999999999998876443322 22211 22334456666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 76 ~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~---------------- 134 (164)
T cd04175 76 FVLVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGK--EQGQNLAR---------------- 134 (164)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcchhccEEcH--HHHHHHHH----------------
Confidence 9999999987 789999999888876432 26899999999999975432111 01111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. ++++++||.+.+
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 135 ----------------QWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ----------------HhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112579999999998 999999998765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=184.65 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=120.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 78 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV----EFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 78 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccce----eEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 68999999999999999999998875433333221 11122234456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|||++++ ++++.+..|+..+..... .+.|+++|+||+|+...... ++..+. .+
T Consensus 79 ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iiiv~nK~Dl~~~~~~~~~~~~~~----~~--------------- 135 (166)
T cd04122 79 LMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIFLIGNKADLEAQRDVTYEEAKQF----AD--------------- 135 (166)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCcCHHHHHHH----HH---------------
Confidence 999999998 889999999988765432 67899999999999754322 221111 11
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ ++++++++.+.+
T Consensus 136 -----------------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 -----------------ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123589999999999 999998887654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=186.44 Aligned_cols=163 Identities=22% Similarity=0.367 Sum_probs=120.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+...+|+++|++|||||||++++..+.+.. +.++..... . .+... .+.+.+|||||+++++..+..+++.
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-----~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ 84 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-----E-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQN 84 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-----E-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcC
Confidence 3567899999999999999999998877643 222322211 1 12222 3789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. +++.....++..++..... .+.|++||+||+|+......+++.+.+..
T Consensus 85 ad~iI~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~l~~---------------- 145 (182)
T PTZ00133 85 TNGLIFVVDSNDR-ERIGDAREELERMLSEDEL--RDAVLLVFANKQDLPNAMSTTEVTEKLGL---------------- 145 (182)
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCCCCCCHHHHHHHhCC----------------
Confidence 9999999999997 7788888888887654221 56899999999999765444433222110
Q ss_pred ccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... ..++.++++||++|+ ++++++||.+.+.
T Consensus 146 ----------------~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 146 ----------------HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ----------------CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 000 234678899999999 9999999998653
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=183.13 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=120.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+...+.++ .+. .+...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGF 76 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----hhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEE
Confidence 68999999999999999999998875433332 221 1223344566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +.... +.+
T Consensus 77 ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~-~~~---------------- 134 (163)
T cd04136 77 VLVYSITSQ-SSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSR--EEGQA-LAR---------------- 134 (163)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecH--HHHHH-HHH----------------
Confidence 999999997 789999998888876432 25799999999999965322111 11111 110
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 ---------------QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ---------------HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 112589999999999 999999998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=183.59 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=119.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|++|||||||+++++++.+...+.++.... + .......+..+.+.+|||||++++......+++.+|++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~---~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT---Y--RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAF 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe---E--EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEE
Confidence 689999999999999999999998865444433211 1 12223344557899999999999998888999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. +++..+..|+..+.........+.|+++|+||+|+......... .... ...
T Consensus 77 ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~-~~~---------------- 136 (165)
T cd04140 77 ILVYSVTSK-QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSN--EGAA-CAT---------------- 136 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHH--HHHH-HHH----------------
Confidence 999999997 78888888876665432211267999999999999653221110 0000 000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|+ ++++++||.+..|
T Consensus 137 ---------------~~~~~~~e~SA~~g~~v~~~f~~l~~~~~ 165 (165)
T cd04140 137 ---------------EWNCAFMETSAKTNHNVQELFQELLNLEK 165 (165)
T ss_pred ---------------HhCCcEEEeecCCCCCHHHHHHHHHhccC
Confidence 123579999999998 9999999987643
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=182.27 Aligned_cols=158 Identities=22% Similarity=0.345 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCc-ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+|+++|++|||||||++++.++.+ .....++....... .. ...+.+.+|||||+.+++..+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~------~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES------FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE------EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEE
Confidence 589999999999999999998753 22222222211111 11 1236899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++.....++..++........++|+++|+||+|+.......++.+.+.
T Consensus 73 i~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--------------------- 130 (162)
T cd04157 73 IFVIDSSDR-LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--------------------- 130 (162)
T ss_pred EEEEeCCcH-HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC---------------------
Confidence 999999997 6777888888887764322235899999999999976544333322211
Q ss_pred ccCCCCCCCeeecc-CCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 225 FTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 225 ~~~~~~~~~f~f~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
... ....+.++++||++|+ ++++++||.+
T Consensus 131 -----------~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 131 -----------LENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -----------CccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 000 1234579999999999 9999999975
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=182.17 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|+|||||++++..+.+...+.++.. .......+...+..+.+.+|||+|++++...+..+++.+|++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG----VDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI 76 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence 4799999999999999999999988544443332 222223344556667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. ++++.+..|+..+.... ..+.|+++|+||+|+....... +....+.+
T Consensus 77 i~v~d~~~~-~sf~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~------------------- 133 (161)
T cd04117 77 FLVYDISSE-RSYQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAK------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHH-------------------
Confidence 999999997 88999999998887653 2579999999999997544321 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. ++++++||.+.
T Consensus 134 ----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 ----------------EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ----------------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 122579999999998 99999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=184.48 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=120.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.|...+.+++... +...+..++..+.+.+|||+|++++...+..+++.+|++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~-----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-----YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 76 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-----eEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEE
Confidence 589999999999999999999998865554444321 222344567678999999999999999899999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. ++++.+.. |+..+.... .+.|+++|+||+|+..... ..+.+... ....+..++..
T Consensus 77 ilv~d~~~~-~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~---~~~~l~~~------~~~~v~~~~~~- 141 (175)
T cd01874 77 LVCFSVVSP-SSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDDPS---TIEKLAKN------KQKPITPETGE- 141 (175)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhChh---hHHHhhhc------cCCCcCHHHHH-
Confidence 999999997 78998874 666665432 5799999999999864321 11111100 00000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.++...+.+.|++|||++|+ ++++++.+.+++
T Consensus 142 -----------~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 142 -----------KLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred -----------HHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 01111234689999999998 999999887753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=191.88 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=123.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++..+.+...+.+++.. ......+..++..+.+.+|||||++++...+..|++.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV----EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce----eEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 46789999999999999999999998875544444332 22222233345557999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. .++..+..|+..+.... .+.|+++|+||+|+....... +.+ . +..
T Consensus 87 ~~~ilvfD~~~~-~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~------------- 143 (219)
T PLN03071 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA---KQV-T-FHR------------- 143 (219)
T ss_pred cEEEEEEeCCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCH---HHH-H-HHH-------------
Confidence 999999999998 88999999998887642 679999999999996432111 111 0 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. ++++++||.+.+
T Consensus 144 ------------------~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ------------------hcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 234579999999999 999999998765
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=182.52 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.... +. ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~-~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID---FK-VKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 77 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE---EE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEE
Confidence 589999999999999999999998754443333211 11 12233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. ++++.+..|+..+.... ..+.|+++|+||+|+...... ++..+ +.+
T Consensus 78 l~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~------------------ 134 (165)
T cd01865 78 ILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVSSERGRQ-LAD------------------ 134 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccCHHHHHH-HHH------------------
Confidence 999999997 78999999998876543 257899999999999754321 21111 111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 -----------------QLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=186.22 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=120.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.|...+.++. +.......+..++..+.+.+|||+|++++...+..+++.+|++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~----g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~i 76 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL----GVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAI 76 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEE
Confidence 489999999999999999999998865444433 3222333445567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|||+++. .++..+..|+..+..... ...| ++|+||+|+......+.... +.++.+++
T Consensus 77 ilv~D~t~~-~s~~~i~~~~~~~~~~~~---~~~p-ilVgnK~Dl~~~~~~~~~~~-~~~~~~~~--------------- 135 (182)
T cd04128 77 LFMFDLTRK-STLNSIKEWYRQARGFNK---TAIP-ILVGTKYDLFADLPPEEQEE-ITKQARKY--------------- 135 (182)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCE-EEEEEchhccccccchhhhh-hHHHHHHH---------------
Confidence 999999997 889999999988876432 4566 67899999964322111111 11112211
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
++ ..++++++|||++|+ ++++++++.+.+
T Consensus 136 ------------a~-~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 136 ------------AK-AMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred ------------HH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 122579999999998 999999998753
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=186.63 Aligned_cols=161 Identities=13% Similarity=0.192 Sum_probs=122.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++.++.+.....++. +. .+...+..++..+.+.+|||||++++...+..|++.+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~ 77 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----ED-SYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTG 77 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hh-EEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcC
Confidence 356899999999999999999999988754433332 21 1223344566668899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH--HHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. ++++.+..|+..+.+... ..+.|+++|+||+|+....... +..+. . +
T Consensus 78 d~iilv~D~s~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-~---~------------ 138 (189)
T PTZ00369 78 QGFLCVYSITSR-SSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQEL-A---K------------ 138 (189)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHH-H---H------------
Confidence 999999999998 789999998888876432 2588999999999986533211 11111 1 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++||.+.+
T Consensus 139 --------------------~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 --------------------SFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred --------------------HhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 113479999999999 999999998764
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=184.01 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=121.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|.+|||||||++++.++.|...+.++.. .......+..+|..+.+++|||||++++...+..+++.+|+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG----VDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAII 77 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEE
Confidence 799999999999999999999988655544433 2222233445666689999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+..........+......+
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~------------------ 136 (170)
T cd04108 78 IVFDLTDV-ASLEHTRQWLEDALKEND--PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA------------------ 136 (170)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEChhcCccccccccHHHHHHHHH------------------
Confidence 99999996 789999999988876532 145789999999999654321111111111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++|. +++++++|.+.+
T Consensus 137 --------------~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 137 --------------EMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred --------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 113478999999998 999999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=184.51 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++..+.|...+.+++... +...+..++..+.+.+|||+|+++|......+++.+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~-----~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a 77 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-----YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 77 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee-----eEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCC
Confidence 456799999999999999999999998866555544321 223355677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|||+++. .+++.+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 78 d~~ilvyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 78 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 999999999998 889997 67887776542 5799999999999954
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=183.57 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.||+++|++|||||||++++.++.|...+.++.. .. +...+.+++..+.+.+|||+|++.+......+++.+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~----~~-~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF----EN-YTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDA 75 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE----EE-EEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCE
Confidence 36899999999999999999999988655544432 22 22334556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|||+++. ++++.+ ..|+..+.... ++.|+++|+||+||..... ...+ +... ....++.++..
T Consensus 76 ~ilvfdit~~-~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~--~~~~-----~~~~--~~~~v~~~e~~ 141 (178)
T cd04131 76 VLICFDISRP-ETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLS--TLME-----LSHQ--RQAPVSYEQGC 141 (178)
T ss_pred EEEEEECCCh-hhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChh--HHHH-----HHhc--CCCCCCHHHHH
Confidence 9999999998 889986 68887776643 6899999999999964211 1000 0000 00001000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 265 (268)
.|+...+...|+||||++|+ ++++++.+.+.
T Consensus 142 ------------~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 ------------AIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred ------------HHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 02221222379999999985 99998887763
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=182.86 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+++++|++|||||||+.++..+.|...+.++... .+......++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 76 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-----eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEE
Confidence 58999999999999999999999886555444322 1222334567678999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|||+++. +++..+. .|+..+.... .+.|+++|+||+|+..... .+.+.+. ....++..+..
T Consensus 77 ilv~d~~~~-~sf~~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~----------~~~~v~~~~~~ 141 (174)
T cd01871 77 LICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEK----------KLTPITYPQGL 141 (174)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhccChhhHHHHhhc----------cCCCCCHHHHH
Confidence 999999997 8899886 4666555432 5899999999999964321 1111000 00000000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+....+.++|+||||++|+ ++++++.+.+.
T Consensus 142 ------------~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 142 ------------AMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ------------HHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 01111233589999999999 99999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=182.07 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|+|||||++++.++.+...+.++. +.......+...+..+.+.+|||||++++......+++.+|+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~ 78 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI----GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 78 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc----cceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCE
Confidence 4799999999999999999999998755443333 222222234455666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 136 (167)
T cd01867 79 IILVYDITDE-KSFENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVSKEEGEALA----D-------------- 136 (167)
T ss_pred EEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHH----H--------------
Confidence 9999999997 78999999998887653 26899999999999975332 22211111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 ------------------EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=181.74 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=119.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|||||||++++.++ +...+.++...... .+...+ +.+++||+||+..++..+..|++.+|++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~------~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT------KLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLV 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE------EEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEE
Confidence 4899999999999999999976 44333344332211 122233 78999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. .++.....|+..++..... .++|+++|+||+|+....+..++.+.+. ++.+
T Consensus 72 ~V~D~s~~-~s~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~---------------- 130 (167)
T cd04161 72 FVVDSSDD-DRVQEVKEILRELLQHPRV--SGKPILVLANKQDKKNALLGADVIEYLS--LEKL---------------- 130 (167)
T ss_pred EEEECCch-hHHHHHHHHHHHHHcCccc--cCCcEEEEEeCCCCcCCCCHHHHHHhcC--cccc----------------
Confidence 99999997 6899999999998875322 5789999999999987766655544432 1110
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccC------C-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~ 264 (268)
.......+++++|||++| + +++.++||.+
T Consensus 131 ----------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 131 ----------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ----------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 001123578999999998 5 9999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=181.72 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=121.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+++|+++|.+|+|||||++++..+.+.....++. +.+ +...+..++..+.+++|||||++++...+..|++.+|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI----EDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 75 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch----hhe-EEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCE
Confidence 3689999999999999999999988755433332 212 22334456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|+++. +++..+..|+..+..... ..++|+++|+||+|+........ ....+.+
T Consensus 76 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~------------------ 134 (163)
T cd04176 76 FIVVYSLVNQ-QTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALAE------------------ 134 (163)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHHH------------------
Confidence 9999999997 789999998888876432 26899999999999865332111 1111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+++++|||++|. ++++++|+.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 135 -----------------EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred -----------------HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 112479999999998 999999998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=181.76 Aligned_cols=161 Identities=14% Similarity=0.235 Sum_probs=120.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....++. . ..+......++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ 75 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI----E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch----h-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEE
Confidence 489999999999999999999988754333322 1 11222344456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. ++++.+..|...+.+... ..+.|+++|+||+|+........ +......+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~----------------- 133 (164)
T smart00173 76 LLVYSITDR-QSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLESERVVST--EEGKELAR----------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceEcH--HHHHHHHH-----------------
Confidence 999999997 788888888877766432 25789999999999975432111 11111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++++++|||++|. +++++++|.+.+.
T Consensus 134 ---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 ---------------QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ---------------HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 112589999999998 9999999998764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=180.88 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=120.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|+|||||++++..+.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 77 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT----IGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSAN 77 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc----cceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCC
Confidence 3579999999999999999999988774433222 222222223445565578999999999999988999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|++++ .+++.+..|+..+.... ..+.|+++|+||+|+....... .+......+.
T Consensus 78 ~~llv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-------------- 137 (165)
T cd01864 78 GAIIAYDITRR-SSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVL--FEEACTLAEK-------------- 137 (165)
T ss_pred EEEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccC--HHHHHHHHHH--------------
Confidence 99999999997 78899999998887643 2689999999999997543211 0111110110
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....++++||++|. ++++++++.+.+
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 138 -----------------NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred -----------------cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 222468999999998 999999998764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=185.66 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=120.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .. +...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~----~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ 75 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF----EN-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVI 75 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce----ee-eEEEEEECCEEEEEEEEECCCChhccccccccccCCCEE
Confidence 4899999999999999999999988654433332 11 122234456668899999999999998888999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. ++++.+. .|+..+.... .+.|+++|+||+|+.......+....... ..+..+
T Consensus 76 ilv~dv~~~-~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~~~~~~~~~~~~---------~~v~~~---- 137 (189)
T cd04134 76 MLCFSVDSP-DSLENVESKWLGEIREHC----PGVKLVLVALKCDLREARNERDDLQRYGK---------HTISYE---- 137 (189)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccChhhHHHHhhccC---------CCCCHH----
Confidence 999999997 7888876 5777766532 58999999999999765433222111000 000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+....+.++|++|||++|+ ++++++||.+.+
T Consensus 138 --------~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 138 --------EGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred --------HHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00001111234689999999998 999999998754
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=182.20 Aligned_cols=158 Identities=18% Similarity=0.280 Sum_probs=121.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+...+.++. +.......+...+..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 78 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 78 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence 689999999999999999999988754333332 2222223344456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|+|+++. +++..+..|+..+..... .+.|+++|+||+|+...... ++.. .+.+
T Consensus 79 i~v~d~~~~-~s~~~l~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~~~------------------ 135 (166)
T cd01869 79 IIVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTDKRVVDYSEAQ-EFAD------------------ 135 (166)
T ss_pred EEEEECcCH-HHHHhHHHHHHHHHHhCC---CCCcEEEEEEChhcccccCCCHHHHH-HHHH------------------
Confidence 999999997 789999999988866432 57899999999998654322 1111 1111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 -----------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 -----------------ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -----------------HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 224589999999998 999999998765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=186.88 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=119.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|.+|||||||++++..+.|.....++. +.. +......++..+.+.+|||||+++++..+..+++.+|++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI----EDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFI 75 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch----Hhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEE
Confidence 58999999999999999999888754333332 211 1222345666678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. .++..+..|+..+.........+.|+++|+||+|+......... ...+..+
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~~~------------------ 134 (190)
T cd04144 76 LVYSITSR-STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE--EGAALAR------------------ 134 (190)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH--HHHHHHH------------------
Confidence 99999997 78999999988876543211257899999999999653322110 0111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+.+
T Consensus 135 --------------~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 135 --------------RLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred --------------HhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998753
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=185.47 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=119.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+... ...++.+.......+.+++..+.+.||||||++++......+++.+|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 4899999999999999999999887432 1122222222222344566668999999999999988889999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|+|+++. ++++.+..|+..+.... ..+.|+++|+||+|+..... .++.. .+. +
T Consensus 78 i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~---~--------------- 134 (191)
T cd04112 78 LLLYDITNK-ASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVKREDGE-RLA---K--------------- 134 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccCHHHHH-HHH---H---------------
Confidence 999999997 78999999988887653 25789999999999964322 11111 111 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|+++||++|+ +++++++|.+.+
T Consensus 135 -----------------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 135 -----------------EYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998765
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=182.82 Aligned_cols=160 Identities=32% Similarity=0.491 Sum_probs=129.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|+.||||||+++++..+.... ..+|...+... +...+ +.+.+||.+|+..++..|..|++.+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~------i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEE------IKYKG--YSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEE------EEETT--EEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccce------eeeCc--EEEEEEeccccccccccceeecccc
Confidence 678999999999999999999999876432 33333322222 22234 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|||+|+++. +.+.+....+..++.+... .++|++|++||+|+......+++.+.+..
T Consensus 83 ~~iIfVvDssd~-~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~~~~~~~i~~~l~l----------------- 142 (175)
T PF00025_consen 83 DGIIFVVDSSDP-ERLQEAKEELKELLNDPEL--KDIPILILANKQDLPDAMSEEEIKEYLGL----------------- 142 (175)
T ss_dssp SEEEEEEETTGG-GGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTTSSTHHHHHHHTTG-----------------
T ss_pred ceeEEEEecccc-eeecccccchhhhcchhhc--ccceEEEEeccccccCcchhhHHHhhhhh-----------------
Confidence 999999999997 7799999999999987543 68999999999999887777766655431
Q ss_pred cCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+ ...+.++.|||++|+ +.+.++||.+.
T Consensus 143 ---------------~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 143 ---------------EKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ---------------GGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---------------hhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 111 356889999999999 99999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=182.88 Aligned_cols=161 Identities=22% Similarity=0.374 Sum_probs=120.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++..+.+.. ..++....... ...++ +.+.+|||||+..+...+..+++.+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~------~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE------IVYKN--IRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE------EEECC--eEEEEEECCCCHHHHHHHHHHhhcC
Confidence 357899999999999999999999887743 23333322221 12222 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. +++.....++..++..... .+.|+++++||+|+....+.+++.+.+.. ..
T Consensus 84 d~vi~V~D~s~~-~~~~~~~~~l~~~~~~~~~--~~~p~viv~NK~Dl~~~~~~~~i~~~l~~--~~------------- 145 (174)
T cd04153 84 DAVILVIDSTDR-ERLPLTKEELYKMLAHEDL--RKAVLLVLANKQDLKGAMTPAEISESLGL--TS------------- 145 (174)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhchhh--cCCCEEEEEECCCCCCCCCHHHHHHHhCc--cc-------------
Confidence 999999999997 6788888888888765321 57999999999999764444433332210 00
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ...++++++|||++|+ ++++++||.++
T Consensus 146 --------------~--~~~~~~~~~~SA~~g~gi~e~~~~l~~~ 174 (174)
T cd04153 146 --------------I--RDHTWHIQGCCALTGEGLPEGLDWIASR 174 (174)
T ss_pred --------------c--cCCceEEEecccCCCCCHHHHHHHHhcC
Confidence 0 0234689999999998 99999999763
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=179.72 Aligned_cols=161 Identities=14% Similarity=0.224 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..||+++|++|+|||||++++.++.+..... ++.+.. +......++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~----~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYD----PTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEG 76 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccC----CCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCE
Confidence 4699999999999999999999887643332 222222 22223456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+........ +...+..+
T Consensus 77 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~---------------- 135 (164)
T cd04145 77 FLLVFSVTDR-GSFEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSR--EEGQELAR---------------- 135 (164)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecH--HHHHHHHH----------------
Confidence 9999999997 789999999888776432 25889999999999975432111 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 136 ----------------KLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ----------------HcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 123478999999998 999999998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=188.43 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCC-ceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG-KIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+||+++|++|||||||+++|.++.+...+.++ .+...+...+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T----~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ 76 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQT----IGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHA 76 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc----eeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCE
Confidence 48999999999999999999998875544333 33222333333333 45789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||+++. ++++.+..|+..+.........+.|+++|+||+|+....... .+......+
T Consensus 77 iilV~D~t~~-~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~---------------- 137 (215)
T cd04109 77 VFLVYDVTNS-QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQ---------------- 137 (215)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHH----------------
Confidence 9999999997 789999988888876532212467899999999996432211 111111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ----------------~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 138 ----------------ANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=181.98 Aligned_cols=160 Identities=22% Similarity=0.357 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.+..+. .+.++.+. ... .+..++ +.+.+|||||++.++..+..+++.+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~-~~~-~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGF-QIK-TLEYEG--YKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCcccc-ceE-EEEECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999987542 12232221 111 122233 6899999999999998999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---------------- 143 (173)
T cd04154 83 DALIWVVDSSDR-LRLDDCKRELKELLQEER--LAGATLLILANKQDLPGALSEEEIREALELD---------------- 143 (173)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCCCHHHHHHHhCcc----------------
Confidence 999999999997 678888888888875422 2689999999999997655444333322110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......+++++|||++|+ ++++++||..
T Consensus 144 ---------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 ---------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ---------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 001345789999999999 9999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=178.96 Aligned_cols=159 Identities=15% Similarity=0.203 Sum_probs=120.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||+++++++++... ..++.+.......+..++..+.+.+|||||+..+...+..+++.+|++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~i 76 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVA 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 4899999999999999999999887442 233333333334444556557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|++++ ++++.+..|+..+..... .+.|+++|+||+|+..... ..+....+. +
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~---------------- 133 (161)
T cd01861 77 VVVYDITNR-QSFDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKA---K---------------- 133 (161)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHH---H----------------
Confidence 999999997 789999999988876432 3699999999999953321 111111111 1
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 ----------------ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ----------------HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 223679999999999 999999998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=180.12 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|||||||++++.++.+.....++. +.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 79 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI----GVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD 79 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce----eeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCC
Confidence 45799999999999999999999988754333332 22222334455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. ++++.+..|...+...... ...+.|+++|+||+|+.... ..++..+...+
T Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 142 (170)
T cd04116 80 CCLLTFAVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE---------------- 142 (170)
T ss_pred EEEEEEECCCH-HHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----------------
Confidence 99999999997 7889998888887764321 12578999999999996322 22222222111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..+++++||++|+ ++++++++.+.+
T Consensus 143 -------------------~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 143 -------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred -------------------CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 122478999999999 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=182.86 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=120.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccce--EEeecc----cccCCceeeEEEEeCCCCCCchhhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDT--FVLHSE----STKKGKIKPVHLVDVPGHSRLRPKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~i~DtpG~~~~~~~~~~ 136 (268)
...||+++|++|||||||++++..+.+.....++....... ..+... ....+..+.+.+|||||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 34799999999999999999999988865544443222111 111100 011234578999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 83 ~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~~~--------- 148 (180)
T cd04127 83 FFRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLEDQRQVSE--EQAKALAD--------- 148 (180)
T ss_pred HhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchhcCccCH--HHHHHHHH---------
Confidence 99999999999999997 889999999988876432 25789999999999975432211 11111111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 149 -----------------------KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -----------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=182.43 Aligned_cols=169 Identities=21% Similarity=0.331 Sum_probs=123.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. ..++..++.... ...+ +.+.+|||||+..++..+..|++.+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~------~~~~--~~~~~~D~~G~~~~~~~~~~~~~~a 85 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEEL------AIGN--IKFTTFDLGGHQQARRLWKDYFPEV 85 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEE------EECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 567999999999999999999999886632 223333332221 2233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..++.... ..+.|+++|+||+|+....+.+++.+.+.- .+. ..+
T Consensus 86 d~ii~vvD~~~~-~~~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~~--~~~------- 151 (184)
T smart00178 86 NGIVYLVDAYDK-ERFAESKRELDALLSDEE--LATVPFLILGNKIDAPYAASEDELRYALGL--TNT--TGS------- 151 (184)
T ss_pred CEEEEEEECCcH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCCCHHHHHHHcCC--Ccc--ccc-------
Confidence 999999999997 678888888888776432 157899999999999766566655544320 000 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..-.+.+.+++|||++|+ ++++++||.+++
T Consensus 152 -----~~--------~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 152 -----KG--------KVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred -----cc--------ccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence 00 001346789999999999 999999998753
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=184.71 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+...+.++. +.......+...+..+.+.+|||||++.++..+..+++.++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~ 80 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTH 80 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc----cceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCc
Confidence 46799999999999999999999988754343333 22222233444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. ++++.+..|+..+.... ...|++||+||+|+...... ++..+ +. +
T Consensus 81 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~-~~---~------------- 138 (199)
T cd04110 81 GVIVVYDVTNG-ESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYK-FA---G------------- 138 (199)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999997 78999999998876643 67899999999999754322 11111 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. |+++++||.+.+
T Consensus 139 -------------------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 139 -------------------QMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -------------------HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=178.86 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=121.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 78 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKST----IGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVG 78 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCE
Confidence 468999999999999999999998874433332 3322233334456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+. . +
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~pi~vv~nK~Dl~~~~~~~~~~~~~~-~---~-------------- 136 (165)
T cd01868 79 ALLVYDITKK-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTEEAKAF-A---E-------------- 136 (165)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccccCCHHHHHHH-H---H--------------
Confidence 9999999987 789999999888876532 4689999999999875322 1111111 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|. +++++++|.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 ------------------KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ------------------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 123579999999998 999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=186.53 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||++++..+.|...+.+++... +...+..++..+.+.||||+|+++|......|++.+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~-----~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-----YTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee-----eEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 45799999999999999999999998876555554322 1223556777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 143 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
++|+|||+++. .++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 87 ~vIlVyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 87 AVLLCFDISRP-ETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 99999999998 889874 78887776542 5789999999999864
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=177.57 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=117.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++.... ........++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT----LYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHAC 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE----EEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEE
Confidence 489999999999999999999988754433333222 1222233456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++..+..|+..+.... ++.|+++|+||+|+.... . +.... +.
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~~-~----~~~~~-~~----------------- 128 (161)
T cd04124 77 ILVFDVTRK-ITYKNLSKWYEELREYR----PEIPCIVVANKIDLDPSV-T----QKKFN-FA----------------- 128 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEECccCchhH-H----HHHHH-HH-----------------
Confidence 999999997 77888888888876532 579999999999984321 1 11110 00
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+++++++||++|. ++++++.+.+.+
T Consensus 129 -------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 129 -------------E-KHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -------------H-HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 123579999999998 999999888754
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=179.42 Aligned_cols=164 Identities=20% Similarity=0.339 Sum_probs=116.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+|+++|++|||||||++++.+...... ....+.++.+.... .+.+++ ..+.+|||||+.++...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432100 01111122111111 122233 689999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++.....++..+..... ..+.|+++++||+|+......+++.+.+....+.+
T Consensus 77 ~v~vvd~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~-------------- 139 (167)
T cd04160 77 IIYVIDSTDR-ERFEESKSALEKVLRNEA--LEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI-------------- 139 (167)
T ss_pred EEEEEECchH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEEccccccCCCHHHHHHHhccccccc--------------
Confidence 9999999987 678888888888876432 25799999999999976655544443333211100
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....++++++||++|+ ++++++||.++
T Consensus 140 ---------------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 140 ---------------GRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred ---------------cCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 0234689999999999 99999999764
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=178.36 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=121.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .......+..++..+.+++|||||++++...+..+++.+|++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG----IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGV 76 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc----eeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEE
Confidence 4899999999999999999999987554443332 222222334456668999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCc--cCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTV--VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|+|+|+++. .++..+..|+..+...... ...+.|+++|+||+|+.... ..++..+...
T Consensus 77 ilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 138 (168)
T cd04119 77 LLVYDVTDR-QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE----------------- 138 (168)
T ss_pred EEEEECCCH-HHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----------------
Confidence 999999997 7888999998888765320 01468999999999996422 2222211111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 139 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 -------------------SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=181.29 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=123.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+.... +.+++ ..+.+||+||+..+...+..+++.+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~~------i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~a 87 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEE------LTIGN--IKFKTFDLGGHEQARRLWKDYFPEV 87 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceEE------EEECC--EEEEEEECCCCHHHHHHHHHHhccC
Confidence 467999999999999999999999887632 33444443322 22334 6889999999999888889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..+.|+++++||+|+......+++.+.+.. .+...+
T Consensus 88 d~iilV~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~------- 153 (190)
T cd00879 88 DGIVFLVDAADP-ERFQESKEELDSLLSDEE--LANVPFLILGNKIDLPGAVSEEELRQALGL----YGTTTG------- 153 (190)
T ss_pred CEEEEEEECCcH-HHHHHHHHHHHHHHcCcc--ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc----cccccc-------
Confidence 999999999987 678888888888876432 257999999999999765454444333321 000000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+...+ -......+++++|||++|+ ++++++||.+++
T Consensus 154 -~~~~~--------~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 154 -KGVSL--------KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred -ccccc--------cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 00000 0001245689999999999 999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=175.23 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=127.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|+.|||||+|+.+++.+.|......|+... .-...++++++.++++||||+|++.+++....|++.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGve----fg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a 79 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVE----FGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGA 79 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeee----eceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccC
Confidence 356799999999999999999999999855444444332 2234466788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
.++|+|||.+.. ++|..+..||.++.++.. ++..+++++||+||...+.+.. --+.+.+
T Consensus 80 ~GalLVydit~r-~sF~hL~~wL~D~rq~~~---~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~---------------- 139 (216)
T KOG0098|consen 80 AGALLVYDITRR-ESFNHLTSWLEDARQHSN---ENMVIMLIGNKSDLEARREVSKEEGEAFAR---------------- 139 (216)
T ss_pred cceEEEEEccch-hhHHHHHHHHHHHHHhcC---CCcEEEEEcchhhhhccccccHHHHHHHHH----------------
Confidence 999999999998 899999999999999864 8999999999999987653321 1112221
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.....|+++||++++ +++.+.-+..
T Consensus 140 -------------------ehgLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 140 -------------------EHGLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred -------------------HcCceeehhhhhhhhhHHHHHHHHHH
Confidence 234568899999998 8888665544
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=177.04 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....++... .........++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGV----EFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGA 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee----eEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEE
Confidence 48999999999999999999998875433333322 22222233456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. .++..+..|+..+.... .++.|+++|+||+|+..... .++......
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (161)
T cd04113 77 LLVYDITNR-TSFEALPTWLSDARALA---SPNIVVILVGNKSDLADQREVTFLEASRFAQ------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcchhccCCHHHHHHHHH-------------------
Confidence 999999997 78889999988776543 26899999999999975322 112111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 134 -----------------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 -----------------ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 112589999999999 999999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-27 Score=171.00 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=124.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...||+++|.+|+|||||+-+++.+.|.+...+++. -......+.++|..+++.||||+|+++|+.+...|++++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIG----vDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIG----VDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceee----eeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 357999999999999999999999998664444432 2333345778899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||++.. ++|..+..|+.++-.+.. .+++-.++|+||+|....+.+ ++=.+
T Consensus 86 GiIlVYDVT~R-dtf~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~reEG~k-------------------- 142 (209)
T KOG0080|consen 86 GIILVYDVTSR-DTFVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDREEGLK-------------------- 142 (209)
T ss_pred eeEEEEEccch-hhHHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccHHHHHH--------------------
Confidence 99999999998 889999999999877654 267778899999997643322 21111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|+. ..++-|+||||++.+ ++..++-+.+.
T Consensus 143 ---------------fAr-~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 143 ---------------FAR-KHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred ---------------HHH-hhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 111 345689999999988 77666555543
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=179.04 Aligned_cols=163 Identities=18% Similarity=0.281 Sum_probs=121.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~d 142 (268)
.++|+++|++|||||||++++..+.+...+.++. +.......+..++..+.+.+|||||+++++ ..+..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d 77 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI----GVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVH 77 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce----eEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCC
Confidence 4799999999999999999999988754433332 222222334456666899999999999887 46788999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||++++ .++..+..|+..+..... ..++|+++|+||+|+...... .+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----------------- 137 (170)
T cd04115 78 AVVFVYDVTNM-ASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQIQVPTDLAQRFAD----------------- 137 (170)
T ss_pred EEEEEEECCCH-HHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhhcCCCHHHHHHHHH-----------------
Confidence 99999999997 889999999888876532 267999999999998654321 111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeecc---CC-chhHHHHHHhhcCC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLT---GE-ISQVEQFIREQVKP 268 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~---g~-i~~l~~~l~~~~~p 268 (268)
..+++|++|||++ ++ +++++..+.+.+++
T Consensus 138 ------------------~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~~ 170 (170)
T cd04115 138 ------------------AHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred ------------------HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhhC
Confidence 2236799999999 55 99999998887653
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=176.49 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++.++.+.... .++.+.......+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 76 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAA 76 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCE
Confidence 368999999999999999999998874422 2222322222334455666889999999999999889999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++.....|+..+..... .+.|+++++||+|+.... ..++..+.. +
T Consensus 77 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~-------------- 134 (163)
T cd01860 77 AIVVYDITSE-ESFEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYA----D-------------- 134 (163)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHH----H--------------
Confidence 9999999997 789999999888877532 679999999999987432 222221111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.++++||++|. +++++++|.+.+|
T Consensus 135 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 135 ------------------ENGLLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred ------------------HcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 112579999999998 9999999998874
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=178.43 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=120.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+.....++ .+.......+..++....+.+|||||++++......+++.+|+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 79 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 479999999999999999999988764332222 2222222234445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ++.|+++|+||+|+..... .++..... .
T Consensus 80 il~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 137 (168)
T cd01866 80 ALLVYDITRR-ETFNHLTSWLEDARQHSN---SNMTIMLIGNKCDLESRREVSYEEGEAFA----K-------------- 137 (168)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHH----H--------------
Confidence 9999999987 889999999988876532 6899999999999974322 22221111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|+ ++++++++.+.+
T Consensus 138 ------------------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 ------------------EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=185.22 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.|.. ..+++. ....... . ..+.+.+|||||++.+......|++.+|++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig----~~~~~~~--~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ 71 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG----GAFYLKQ--W--GPYNISIWDTAGREQFHGLGSMYCRGAAAV 71 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc----eEEEEEE--e--eEEEEEEEeCCCcccchhhHHHHhccCCEE
Confidence 479999999999999999999998853 233322 2111111 1 236899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|+|||+++. .++..+..|+..+.... ..+.|+++|+||+|+..
T Consensus 72 IlV~Dvt~~-~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 72 ILTYDVSNV-QSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 999999997 88999999988887643 26799999999999965
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=176.53 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=117.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC--CceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK--GKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.||+++|++|+|||||++++.++.+.....++.. .......+... +..+.+++|||||++++...+..+++.+|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 76 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG----VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 76 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE----EEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCC
Confidence 3799999999999999999999887543333322 22222222233 55578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. +++..+..|+..+.... .+.|+++|+||+|+........ +......+
T Consensus 77 ~~v~v~d~~~~-~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~--------------- 134 (162)
T cd04106 77 ACILVFSTTDR-ESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITN--EEAEALAK--------------- 134 (162)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCH--HHHHHHHH---------------
Confidence 99999999997 78999988888876532 6899999999999975432211 11111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|. +++++++|.+.
T Consensus 135 -----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 135 -----------------RLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred -----------------HcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 123479999999998 99999999864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=182.05 Aligned_cols=174 Identities=48% Similarity=0.671 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh---cc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF---LP 139 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~---~~ 139 (268)
+...|+++|++|+|||+|+.+|..+.... +.++++++.+. .+ .......+.++|+|||.+.+.....+ ..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~-T~tS~e~n~~~-~~-----~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP-TVTSMENNIAY-NV-----NNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS----B---SSEEEEC-CG-----SSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC-eeccccCCceE-Ee-----ecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 45689999999999999999999986533 45566444321 11 11222478999999999998876554 88
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-cc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV-SE 218 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~ 218 (268)
.+.++|||+|++.....+.+..++|.+++.........+|++|++||+|+..+.+...++..++++|+.++.++++. ..
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~ 154 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLES 154 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999864356888999999998876555689999999999999999999999999999999999998863 22
Q ss_pred --ccccCcccCCCCCCCeeeccCCcee
Q 024385 219 --ADVTNDFTLGIPGQAFSFSQCHNKV 243 (268)
Q Consensus 219 --~~~~~~~~~~~~~~~f~f~~~~~~~ 243 (268)
++......++..+.+|+|++++++|
T Consensus 155 ~d~~~~~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 155 VDEDDDENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp ---------TTS-TTS---GGGSSS-E
T ss_pred cccccccccccCCCCCCcchhhccCCC
Confidence 2233456788888999999998764
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=175.96 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=112.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+.. ..++....... +.. ....+.+|||||+.++...+..+++.+|++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~------~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 71 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET------VTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAII 71 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE------EEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 68999999999999999998877643 22332222111 112 2368999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .++.....++..++.... ..+.|+++|+||+|+.......++.+.+..
T Consensus 72 ~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--------------------- 127 (158)
T cd04151 72 YVVDSTDR-DRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGALSEAEISEKLGL--------------------- 127 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCCCCHHHHHHHhCc---------------------
Confidence 99999986 556666777776655322 157899999999999755433322221100
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......+.++++|||++|+ ++++++||.+
T Consensus 128 ----------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 128 ----------SELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ----------cccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0001234579999999999 9999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=183.23 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=117.0
Q ss_pred EcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEe
Q 024385 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVD 149 (268)
Q Consensus 70 vG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d 149 (268)
+|.+|||||||++++..+.+...+.+++. .......+..++..+.+.+|||+|+++++..+..|++.+|++|+|||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig----~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D 76 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG----VEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 76 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCcee----EEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEE
Confidence 69999999999999998887554444332 22222334445666899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCC
Q 024385 150 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGI 229 (268)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
+++. .++..+..|+..+.... .++|+++|+||+|+.......+ .+ . +..
T Consensus 77 ~t~~-~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~---~~-~-~~~--------------------- 125 (200)
T smart00176 77 VTAR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKAK---SI-T-FHR--------------------- 125 (200)
T ss_pred CCCh-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCHH---HH-H-HHH---------------------
Confidence 9998 88999999988887653 6899999999999854221111 11 0 000
Q ss_pred CCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 230 PGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 230 ~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.|++|||++|+ |+++++||.+.+
T Consensus 126 ----------~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 126 ----------KKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ----------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234689999999999 999999998754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=184.14 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.|+..+.+++... +...+.++++.+.+.+|||+|++.|......+++.+|++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-----~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~i 76 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-----YTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAV 76 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-----eEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEE
Confidence 689999999999999999999998876555554322 223345577778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|+|||+++. ++++.+..++....... .++.|+++|+||+|+...
T Consensus 77 llvfdis~~-~Sf~~i~~~w~~~~~~~---~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 77 LICFDISRP-ETLDSVLKKWQGETQEF---CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh---CCCCCEEEEEECcccccc
Confidence 999999998 88999865444433332 268999999999999653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=187.29 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|.+|||||||++++.++.+...+.+++. .+ ....+.+++..+.+.||||+|++++......++..+|++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~----d~-~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~i 75 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE----DF-HRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVF 75 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh----Hh-EEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 4899999999999999999999988654443332 11 222344567778999999999999988888889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCC------ccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNST------VVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
|+|||+++. ++++.+..|+..+..... ....+.|+++|+||+|+.... ..+++.+.+..
T Consensus 76 IlVfdv~~~-~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~------------ 142 (247)
T cd04143 76 ILVFSLDNR-ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG------------ 142 (247)
T ss_pred EEEEeCCCH-HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh------------
Confidence 999999997 889999998888865311 012579999999999997422 22222211110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.++++||++|. +++++++|.+..
T Consensus 143 -----------------------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 -----------------------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred -----------------------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 224579999999998 999999998754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=182.95 Aligned_cols=161 Identities=14% Similarity=0.235 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.+||+++|++|||||||++++.++.+.....+++ +.......+.. ++..+.+++|||||++.+......+++.+|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti----~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV----GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSV 77 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee----ceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCc
Confidence 4799999999999999999999988754333332 22222222222 355578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||+++. +++..+..|+..+..... ....|+++|+||+|+...... .+..+.+.+
T Consensus 78 ~iilv~D~~~~-~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~----------------- 137 (211)
T cd04111 78 GVLLVFDITNR-ESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLAK----------------- 137 (211)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHHH-----------------
Confidence 99999999997 889999999998876532 246789999999999753321 111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 138 ------------------DLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ------------------HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122689999999998 999999998754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=176.00 Aligned_cols=154 Identities=22% Similarity=0.341 Sum_probs=115.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.++.+...+.++.... . ..+++..+.+.+|||||+++++..+..+++.+|++|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~----~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----S----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc----e----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 7999999999999999999887754444433221 1 1123334789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 147 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 147 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
|||+++. .++.....|+..+.... .++|+++|+||+|+......+++.+.++ ++.
T Consensus 74 V~D~t~~-~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~------------------ 128 (164)
T cd04162 74 VVDSADS-ERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELE--LEP------------------ 128 (164)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhC--Chh------------------
Confidence 9999997 67888888888887542 6899999999999987665554433321 011
Q ss_pred CCCCCCCeeeccCCceeEEEEeeecc------CC-chhHHHHHH
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLT------GE-ISQVEQFIR 263 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~------g~-i~~l~~~l~ 263 (268)
+.. ..++.+++|||++ ++ ++++++.+.
T Consensus 129 ---------~~~-~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 129 ---------IAR-GRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred ---------hcC-CCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 111 2356788888888 77 888887765
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=179.17 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .......+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 76 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG----VDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGY 76 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEE
Confidence 4899999999999999999999987543333332 222223344556668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. +++..+..|+..+..... .+.|+++|+||+|+....... +....+.+
T Consensus 77 ilv~d~~~~-~s~~~i~~~~~~i~~~~~---~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~------------------- 133 (188)
T cd04125 77 LLVYDVTDQ-ESFENLKFWINEINRYAR---ENVIKVIVANKSDLVNNKVVDSNIAKSFCD------------------- 133 (188)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECCCCcccccCCHHHHHHHHH-------------------
Confidence 999999998 789999999888876432 568999999999997543211 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|. +++++++|.+.+
T Consensus 134 ----------------~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 134 ----------------SLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999987754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=177.78 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=115.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.||+++|++|||||||++++.++.+...+.++.... ... .+... +..+.+.+|||||++++......+++.+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~----~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN----YVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDV 75 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee----eEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCE
Confidence 489999999999999999999998865444443221 111 12222 556789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-H-HHHHHHHHHHHHHhhhcccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-I-RKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~-~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|+|+|+++. .+++.+.. |+..+... ..+.|+++|+||+|+........ + .+...+....
T Consensus 76 ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~------------ 138 (187)
T cd04132 76 LLICYAVDNP-TSLDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK------------ 138 (187)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH------------
Confidence 9999999997 78888864 66555443 26899999999999975431110 0 0111110010
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..++++|||++|+ ++++++++.+.+
T Consensus 139 -------------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 139 -------------------QGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred -------------------cCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 112278999999998 999998887653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=178.89 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=118.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|+|||||++++.++.+... .+.++.+.......+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG---PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc---CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 3899999999999999999999887431 1222333222333455667778899999999999988899999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. .+++.+..|+..+.... .+.|+++|+||+|+..... ...+. ..++.++
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~---~~~~~~~-------------- 135 (193)
T cd04118 78 IVCYDLTDS-SSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVD---FHDVQDF-------------- 135 (193)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccC---HHHHHHH--------------
Confidence 999999997 78888888888776532 5799999999999864321 10100 0111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..+++++++||++|+ +++++++|.+.+
T Consensus 136 -------------~~-~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 136 -------------AD-EIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------------HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 123478999999998 999999998653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=178.68 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=114.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
++|+++|.+|||||||++++.++.|...+.++... ..+...+.++|..+.+.+|||||..++... ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~----~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHR----RLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccc----ccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh
Confidence 48999999999999999999999885544333321 112222345676688999999997654221 234
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++|+|||++++ ++++.+..|+..+.+.......++|+++|+||+|+....... .+.+.....+
T Consensus 77 ~~~~ad~iilv~D~~~~-~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~-------- 145 (198)
T cd04142 77 GLRNSRAFILVYDICSP-DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRK-------- 145 (198)
T ss_pred hhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHH--------
Confidence 57899999999999997 889999888888876432112679999999999996532211 1111110000
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. ++++++.+.+.
T Consensus 146 -----------------------~~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 146 -----------------------SWKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred -----------------------hcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 224689999999998 99998887754
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=176.40 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=115.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.++.+...+.++.. ..+......++..+.+.+|||||++++...+..+++.+|++|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-----ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-----eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence 58999999999999999999988554443332 1222234456766889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 147 VVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 147 v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
|||+++. ++++.+. .|+..+.... ++.|+++|+||+|+....... . .+... ....++..+.
T Consensus 76 v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~--~-~~~~~------~~~~v~~~~~---- 137 (174)
T smart00174 76 CFSVDSP-ASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLREDKSTL--R-ELSKQ------KQEPVTYEQG---- 137 (174)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhhChhhh--h-hhhcc------cCCCccHHHH----
Confidence 9999997 7888886 4776665532 689999999999997532110 0 00000 0000000000
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+....+...+++|||++|. ++++++.+.+.
T Consensus 138 --------~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 138 --------EALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred --------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 001111223479999999998 99999988765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=173.16 Aligned_cols=159 Identities=23% Similarity=0.286 Sum_probs=118.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....+ +.+.......+...+..+.+.+|||||++.+......+++.+|++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 76 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAA----TIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGV 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCC----cccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEE
Confidence 4899999999999999999998876432222 222111112233345557899999999999988889999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.... ..++..+. ..
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~-~~------------------- 133 (161)
T cd01863 77 ILVYDVTRR-DTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKF-AR------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHH-HH-------------------
Confidence 999999997 778888888887776543 2689999999999997332 22222111 11
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 134 ----------------KHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred ----------------HcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 224579999999998 999999988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=182.22 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=123.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||+++|.++.+...+.+ +.+.......+.+++..+.+.+|||||++++...+..+++.++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~----t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS----TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 457999999999999999999999887543333 3332233334455666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .+++.+..|+..+..... .+.|+++|+||+|+....... +..+.+..
T Consensus 87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----------------- 145 (216)
T PLN03110 87 GALLVYDITKR-QTFDNVQRWLRELRDHAD---SNIVIMMAGNKSDLNHLRSVAEEDGQALAE----------------- 145 (216)
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhCC---CCCeEEEEEEChhcccccCCCHHHHHHHHH-----------------
Confidence 99999999997 789999999888776532 589999999999986543221 11111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|+++||++|. +++++++|.+.+
T Consensus 146 ------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 ------------------KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224689999999998 999999997654
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=173.81 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=113.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|++|||||||+.++..+.|..... |..+.+ ...+.++|..+.+.+|||+|++. ..+++.+|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~----~~~~~~--~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES----PEGGRF--KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC----CCccce--EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence 479999999999999999999888754322 222222 23355677778899999999975 3567889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|||+++. ++++.+..|+..+...... .+.|+++|+||.|+...... ++.....+.+.
T Consensus 70 ilv~d~~~~-~sf~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~~~~-~v~~~~~~~~~----------------- 128 (158)
T cd04103 70 IFVFSLENE-ASFQTVYNLYHQLSSYRNI--SEIPLILVGTQDAISESNPR-VIDDARARQLC----------------- 128 (158)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEeeHHHhhhcCCc-ccCHHHHHHHH-----------------
Confidence 999999998 8999999999988775422 57899999999998532111 11111111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.-..++.|+||||++|. |+++++++.+.
T Consensus 129 -------------~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 129 -------------ADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred -------------HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 00234689999999999 99999998865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=173.57 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=120.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.+..+.....++... ......+..++..+.+.+||+||+..+......+++.+|++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 76 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV----DFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGA 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee----EEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEE
Confidence 48999999999999999999988764333333222 11222344456667899999999999998999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|++++ .+++.+..|+..+..... .++|+++|+||+|+.... ..+...+...
T Consensus 77 ilv~d~~~~-~s~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (164)
T smart00175 77 LLVYDITNR-ESFENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAE------------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHH-------------------
Confidence 999999997 778888888888776542 689999999999987532 2222222111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.+.
T Consensus 134 -----------------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 134 -----------------EHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123579999999998 9999999988764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=172.06 Aligned_cols=156 Identities=26% Similarity=0.427 Sum_probs=118.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+.. ..++........ ...+ +.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~~~~~~~------~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIGFNVETV------EYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGII 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcCcceEEE------EECC--EEEEEEECCCChhhHHHHHHHhccCCEEE
Confidence 68999999999999999999887422 233333222211 1222 68999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|++++ .++.....++..+..... ..+.|+++|+||+|+......+++.+.+....
T Consensus 72 ~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------------- 129 (158)
T cd00878 72 FVVDSSDR-ERIEEAKEELHKLLNEEE--LKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------------- 129 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEeeccCCccccCHHHHHHhhChhh-------------------
Confidence 99999997 778888888888877543 26899999999999987655544443322110
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
....+++++++||++|. +++++++|.+
T Consensus 130 ------------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 130 ------------ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ------------ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 11346789999999999 9999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=174.01 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+.....++ .+...........+..+.+.+||+||++.+...+..+++.+|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 76 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCC 76 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCc----cceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEE
Confidence 48999999999999999999998764433222 22222233344566667889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|+|+|++++ .++.....|...++..... ...++|+++|+||+|+.... ..++....++.
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 138 (172)
T cd01862 77 VLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----------------- 138 (172)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-----------------
Confidence 999999997 6778887777766554221 12479999999999997422 23332222211
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++++++||++|. ++++++++.+.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 139 ------------------NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ------------------cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 223589999999999 999999988753
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=176.33 Aligned_cols=166 Identities=27% Similarity=0.371 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+|+++|++|||||||++++..+.+... .++..... ....+.. ++..+.+.+|||||++++...+..+++.+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~----~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 76 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT----EKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCT 76 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce----eEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccC
Confidence 357899999999999999999998876432 22222111 1111111 33447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..+.|+++|+||+|+......+++.+.+. ++.
T Consensus 77 d~ii~v~D~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~------------- 138 (183)
T cd04152 77 DGIVFVVDSVDV-ERMEEAKTELHKITRFSE--NQGVPVLVLANKQDLPNALSVSEVEKLLA--LHE------------- 138 (183)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhhhh--cCCCcEEEEEECcCccccCCHHHHHHHhC--ccc-------------
Confidence 999999999997 677778778777765432 25799999999999975444433322211 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ....+++++|||++|+ +++++++|.+.+
T Consensus 139 --------------~~-~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 --------------LS-ASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred --------------cC-CCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 0224678999999999 999999988654
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=163.82 Aligned_cols=164 Identities=23% Similarity=0.414 Sum_probs=128.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
+.++.+|+++|..|+||||++++|.+... .++.|+.+ +.++. ....+ +.+++||.+|+..+++.|.+|+..
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~g-f~Ikt-l~~~~--~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLG-FQIKT-LEYKG--YTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccc-eeeEE-EEecc--eEEEEEEcCCcchhHHHHHHhhhc
Confidence 34689999999999999999999998762 22333332 22221 22334 799999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. ..+++....+..++..... .+.|++|++||.|+..+.+.+++...++ ++.+
T Consensus 84 tdglIwvvDssD~-~r~~e~~~~L~~lL~eerl--aG~~~Lvlank~dl~~~l~~~~i~~~~~--L~~l----------- 147 (185)
T KOG0073|consen 84 TDGLIWVVDSSDR-MRMQECKQELTELLVEERL--AGAPLLVLANKQDLPGALSLEEISKALD--LEEL----------- 147 (185)
T ss_pred cCeEEEEEECchH-HHHHHHHHHHHHHHhhhhh--cCCceEEEEecCcCccccCHHHHHHhhC--HHHh-----------
Confidence 9999999999997 7799999999998886544 6799999999999998888777765543 1211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ....++.+.|||.+|+ +.+-.+||...+
T Consensus 148 ---------------~--ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 148 ---------------A--KSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ---------------c--cccCceEEEEeccccccHHHHHHHHHHHH
Confidence 0 1456789999999998 888888887653
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=172.89 Aligned_cols=158 Identities=25% Similarity=0.398 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|||||||++++.++.+.. ..++... .+. .+.. +..+.+.+|||||+..+...+..+++.+|++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~-----~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGF-----NVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLV 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCc-----ceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 58999999999999999999987643 2222221 111 1111 22368999999999999888999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .++.....++..++..... .+.|+++|+||+|+......+++...+.. +.
T Consensus 73 ~v~D~~~~-~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~~----------------- 130 (160)
T cd04156 73 YVVDSSDE-ARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPGALTAEEITRRFKL--KK----------------- 130 (160)
T ss_pred EEEECCcH-HHHHHHHHHHHHHHhchhh--cCCCEEEEEECcccccCcCHHHHHHHcCC--cc-----------------
Confidence 99999997 6788888888888764321 57999999999999654433332222110 00
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+.. ..++++++|||++|+ +++++++|.+
T Consensus 131 ----------~~~-~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 131 ----------YCS-DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ----------cCC-CCcEEEEecccccCCChHHHHHHHhc
Confidence 111 235689999999999 9999999875
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=175.63 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=126.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++++|||-|+.|+..+.|....-+|+..+ .....+.++++.+..+||||+||++|+.....|++++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGve----f~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVE----FATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEE----EEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45789999999999999999999999966555554433 22334667888899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||.+.. .+++.+..||.++..+.. .++++++|+||+||...+.+. +.-+.+.+
T Consensus 89 GAllVYDITr~-~Tfenv~rWL~ELRdhad---~nivimLvGNK~DL~~lraV~te~~k~~Ae----------------- 147 (222)
T KOG0087|consen 89 GALLVYDITRR-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE----------------- 147 (222)
T ss_pred eeEEEEechhH-HHHHHHHHHHHHHHhcCC---CCeEEEEeecchhhhhccccchhhhHhHHH-----------------
Confidence 99999999998 889999999999999976 899999999999997643221 11112221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
.+...|+++||+.+. +++.++-+.
T Consensus 148 ------------------~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 148 ------------------KEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred ------------------hcCceEEEecccccccHHHHHHHHH
Confidence 344589999999986 776665443
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=173.26 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=116.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.||+++|++|||||||++++..+ .+...+.++..+........ .. .+..+.+.+|||||++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVP--VD-TDNTVELFIFDSAGQELYSDMVSNYWESPS 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEE--eC-CCCEEEEEEEECCCHHHHHHHHHHHhCCCC
Confidence 38999999999999999999865 45443333332221111111 11 355589999999999998888999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|.++. .++..+..|+..+.... .+.|+++|+||+|+.......... +.+..
T Consensus 78 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 135 (164)
T cd04101 78 VFILVYDVSNK-ASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ----------------- 135 (164)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHH-----------------
Confidence 99999999997 77888888888776642 578999999999996543221111 11110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 136 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ------------------ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ------------------HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 123579999999998 999999998754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=171.77 Aligned_cols=164 Identities=25% Similarity=0.429 Sum_probs=139.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
...+.+|+++|..|+||||++++|..+++.. +++|+..++....+.. +++++||.+|++.+++.|..|++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~ykn--------~~f~vWDvGGq~k~R~lW~~Y~~~ 84 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVETVEYKN--------ISFTVWDVGGQEKLRPLWKHYFQN 84 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCccc-CCCccccceeEEEEcc--------eEEEEEecCCCcccccchhhhccC
Confidence 4678999999999999999999999888654 3666666666555542 799999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|||+|+++. +.+.+..+.+..++.+... .+.|+++++||.|+..+.+..++.+.+.. ..+
T Consensus 85 t~~lIfVvDS~Dr-~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~als~~ei~~~L~l--~~l----------- 148 (181)
T KOG0070|consen 85 TQGLIFVVDSSDR-ERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGALSAAEITNKLGL--HSL----------- 148 (181)
T ss_pred CcEEEEEEeCCcH-HHHHHHHHHHHHHHcCccc--CCceEEEEechhhccccCCHHHHHhHhhh--hcc-----------
Confidence 9999999999998 7799999999999998653 79999999999999999998888777652 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+..+..|+|.+|+ +.+..+||.+.++
T Consensus 149 ------------------~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 ------------------RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ------------------CCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1345688899999999 9999999998764
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=172.94 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=120.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+++|+++|++|||||||++++.++.+.....+ +.+.. +...+..++..+.+.+|||||++++...+..+++.+++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDP----TIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQG 75 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCE
Confidence 36899999999999999999998887443332 22211 22334455666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|++++ ++++....|...+..... ..+.|+++++||+|+......... ......+.
T Consensus 76 ~vlv~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~~--~~~~~~~~--------------- 135 (168)
T cd04177 76 FLLVYSVTSE-ASLNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSRE--DGVSLSQQ--------------- 135 (168)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCHH--HHHHHHHH---------------
Confidence 9999999997 788888888877765322 268999999999999654322110 01110000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++++++||++|. ++++++++.+.+
T Consensus 136 ----------------~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 136 ----------------WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ----------------cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=164.85 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=127.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+.+|+|++|+|||+|+.++..+.|..+++.+++.. +.+. .+.+.|..+.++||||+|+++|+.....|+++.+++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvD---fkir-Tv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVD---FKIR-TVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeee---EEEE-EeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 467899999999999999999999988777766433 2222 345568889999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. ++|.....|+.++..+. ..+|-++|+||.|....+..+... .....
T Consensus 85 ~vVYDVTn~-ESF~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~------------------- 140 (198)
T KOG0079|consen 85 IVVYDVTNG-ESFNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTEDARAFAL------------------- 140 (198)
T ss_pred EEEEECcch-hhhHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHHHHHHHH-------------------
Confidence 999999998 89999999999999875 688999999999998765432211 11111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.-++++||+|||+.+ ++..+..|.+.
T Consensus 141 ----------------~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 141 ----------------QMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ----------------hcCchheehhhhhcccchHHHHHHHHH
Confidence 335689999999987 88887777654
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-26 Score=163.97 Aligned_cols=154 Identities=24% Similarity=0.367 Sum_probs=123.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
-+|++++|+.|+|||+|+.++..++|.+....++....+.- .+.+.++.++++||||+|+++|++..+.|++++.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr----IinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR----IVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce----eeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46899999999999999999999998765555544333322 24457788999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
.++|||+++. ++++.+..|+.++...+. +++-+++++||.||...+.+...... +
T Consensus 85 AlLVYD~Tsr-dsfnaLtnWL~DaR~lAs---~nIvviL~GnKkDL~~~R~VtflEAs--~------------------- 139 (214)
T KOG0086|consen 85 ALLVYDITSR-DSFNALTNWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEAS--R------------------- 139 (214)
T ss_pred eEEEEeccch-hhHHHHHHHHHHHHhhCC---CcEEEEEeCChhhcChhhhhhHHHHH--h-------------------
Confidence 9999999998 899999999999987654 88999999999999876554322110 0
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHH
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 259 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~ 259 (268)
|.+ ++.+-|.|+||+||+ +++.+
T Consensus 140 ------------Faq-Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 140 ------------FAQ-ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred ------------hhc-ccceeeeeecccccccHHHHH
Confidence 333 455689999999998 77653
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-26 Score=163.36 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=125.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
-+||+++|..|+|||+|+.+++.+-|+.+...++.. ...-..+.+.|..++++||||+|+++|++..+.|++.+++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigv----dfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGV----DFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeee----eEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 468999999999999999999999987665555432 2233345667888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||++.. .+|.-+.+|+.++-+.+. ..+--|+|+||+|+.+.+. +.+++.++..+
T Consensus 83 lilvydiscq-psfdclpewlreie~yan---~kvlkilvgnk~d~~drre---vp~qigeefs~--------------- 140 (213)
T KOG0095|consen 83 LILVYDISCQ-PSFDCLPEWLREIEQYAN---NKVLKILVGNKIDLADRRE---VPQQIGEEFSE--------------- 140 (213)
T ss_pred EEEEEecccC-cchhhhHHHHHHHHHHhh---cceEEEeeccccchhhhhh---hhHHHHHHHHH---------------
Confidence 9999999997 789999999999988764 6677789999999976532 23333332221
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....-|+|+||++.+ ++.|+.-+.-+
T Consensus 141 ----------------~qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 141 ----------------AQDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred ----------------hhhhhhhhhcccchhhHHHHHHHHHHH
Confidence 122347889999987 88887666543
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=177.93 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=121.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||++++..+.+...+.++ .+.......+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~t----i~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----ccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4579999999999999999999998775433322 222222233455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.... ..++..+...
T Consensus 81 ~~vlv~D~~~~-~s~~~l~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~----------------- 139 (210)
T PLN03108 81 GALLVYDITRR-ETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK----------------- 139 (210)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccCCCHHHHHHHHH-----------------
Confidence 99999999997 788988888887765432 689999999999997543 2222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++|+.+.+
T Consensus 140 -------------------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 -------------------EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999998887654
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-25 Score=169.96 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=112.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+...... ..+. ... .....+..+.+.+|||||+..+...+..+++.+|+++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~---~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPE---ITI--PADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVIC 75 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccc---eEe--eeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE
Confidence 899999999999999999999987543221 1111 111 1223455578999999999988888888899999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 146 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
+|+|++++ .++..+.. |+..+.... .+.|+++|+||+|+.+........+.+....+.
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~~i~~~~----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 134 (166)
T cd01893 76 LVYSVDRP-STLERIRTKWLPLIRRLG----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE---------------- 134 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhcccccchhHHHHHHHHHHHH----------------
Confidence 99999997 77888754 444444322 589999999999997655432112222111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ....++++|||++|. ++++++.+.+.+
T Consensus 135 -----------~---~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 135 -----------F---REIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred -----------H---hcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 111269999999998 999998887653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=169.14 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|+|||||++++.++.+.....++... ..........+..+.+.+||+||++.+...+..+++.+|++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 76 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA----SFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGA 76 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccce----eEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEE
Confidence 48999999999999999999998774432222211 11222233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. ++++....|+..+..... .++|+++|+||+|+........ +.+.+..+
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~----------------- 133 (162)
T cd04123 77 ILVYDITDA-DSFQKVKKWIKELKQMRG---NNISLVIVGNKIDLERQRVVSK--SEAEEYAK----------------- 133 (162)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCH--HHHHHHHH-----------------
Confidence 999999997 778888888877766432 4799999999999975432111 11111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 134 ---------------~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 ---------------SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123468999999998 999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=172.20 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..||+++|++|||||||++++.++.+...+.++.... +...+.+++..+.+.+|||||++++......+++.+|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-----YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc-----eEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 3689999999999999999999988765444443221 11233455666789999999999998888888999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|+++. +++..+.. |+..+... ..+.|+++|+||+|+.......+ .+. .. ....+...
T Consensus 76 ~i~v~~~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~---~i~----~~--~~~~v~~~--- 138 (175)
T cd01870 76 ILMCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRR---ELA----KM--KQEPVKPE--- 138 (175)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccChhhhh---hhh----hc--cCCCccHH---
Confidence 9999999997 67777754 55555432 15889999999999865322111 010 00 00000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+....+..++++|||++|. +++++++|.+.+
T Consensus 139 ---------~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 139 ---------EGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ---------HHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 00001111234579999999998 999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=170.15 Aligned_cols=158 Identities=16% Similarity=0.260 Sum_probs=120.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||+++++.+.+.....++.... +......++..+.+.+|||||+.++......+++.+|++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-----EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEE
Confidence 489999999999999999999888754333332211 122334566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|++++ .++.....|+..+..... ..++|+++|+||+|+.... ...+..+ +. +
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~---~--------------- 133 (164)
T cd04139 76 LLVFSITDM-ESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA---R--------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHH-HH---H---------------
Confidence 999999987 778888899888887533 2689999999999997522 1111111 11 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+++
T Consensus 134 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 -----------------QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -----------------HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=169.98 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=124.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+...+.++ .+.......+..++..+.+.+||++|++++......+++.+|++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPT----IGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAII 76 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETT----SSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccc----ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999886544433 333344444556677789999999999999998999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|.++. ++++.+..|+..+..... .+.|+++++||.|+.... +.++..+...
T Consensus 77 i~fd~~~~-~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-------------------- 132 (162)
T PF00071_consen 77 IVFDVTDE-ESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-------------------- 132 (162)
T ss_dssp EEEETTBH-HHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHH--------------------
T ss_pred cccccccc-cccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHH--------------------
Confidence 99999997 899999999999887642 479999999999998633 3333222221
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||+++. +.+++..+.+.+
T Consensus 133 ----------------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 133 ----------------ELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ----------------HTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ----------------HhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 122689999999998 999887776643
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-25 Score=170.30 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|++|||||||++++..+.+.....+ +.+.......+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 81 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA----TIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSAN 81 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 458999999999999999999998776433222 2222222223445666678999999999999998899999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... ..+.+.+.+
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~-------------- 140 (169)
T cd04114 82 ALILTYDITCE-ESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAERREVS---QQRAEEFSD-------------- 140 (169)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccC---HHHHHHHHH--------------
Confidence 99999999987 67888888877665432 2579999999999996543321 111111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++|||++|. +++++++|.+++
T Consensus 141 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 -----------------AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred -----------------HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112579999999998 999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=170.62 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=116.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|+|||||++++..+.+...+.++... .+...+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 75 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-----HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 75 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-----eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEE
Confidence 48999999999999999999999875444433321 1222344566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+++. ++++.+.. |+..+... ..+.|+++|+||+|+.+............ ...++..+..
T Consensus 76 ilv~~~~~~-~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~~~~- 140 (174)
T cd04135 76 LICFSVVNP-ASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDPKTLARLNDMK---------EKPVTVEQGQ- 140 (174)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcChhhHHHHhhcc---------CCCCCHHHHH-
Confidence 999999997 78888864 54444432 27899999999999865432111100000 0000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+....+..+|++|||++|. ++++++.+.+.+
T Consensus 141 -----------~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 141 -----------KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred -----------HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 01111223479999999999 999999887653
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=172.92 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=110.1
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHcCCccccc-ceeeccccc---eEEee------cccccCCceeeEEEEeCCCCCCchh
Q 024385 64 STTIVLAGLSGSGKTVLFY-QLRDGSTHQGT-VTSMEPNED---TFVLH------SESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~-~l~~~~~~~~~-~~~~~~~~~---~~~~~------~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
.+||+++|++|||||||+. ++.++.+.... ...+.|+.+ .+... ....++|..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999996 66555442211 122333332 11111 1124577789999999999975 2
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-------------H
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-------------I 198 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-------------~ 198 (268)
....+++.+|++|+|||+++. .+++.+. .|+..+.... .+.|+++|+||+|+......+. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASP-NSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCCh-hHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 455689999999999999997 8899887 4777665432 5789999999999964211000 0
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+....++.+. ++. ..+++|+||||++|+ ++++++.+.+.
T Consensus 155 ~~V~~~e~~~---------------------------~a~-~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRA---------------------------VAK-ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHH---------------------------HHH-HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0000001111 111 234589999999999 99999988764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=166.78 Aligned_cols=156 Identities=28% Similarity=0.350 Sum_probs=115.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.+..+...+.++....... ...++ +.+.+|||||+..++..+..+++.+|++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~------~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK------VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE------EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 7999999999999999999998765554444322211 11222 689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 147 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 147 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
|+|+++. .++.....++..+..... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 74 v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~------------------- 129 (159)
T cd04159 74 VVDAADR-TALEAAKNELHDLLEKPS--LEGIPLLVLGNKNDLPGALSVDELIEQMNL--K------------------- 129 (159)
T ss_pred EEECCCH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCcCHHHHHHHhCc--c-------------------
Confidence 9999986 667777788888776432 257899999999998765443322211110 0
Q ss_pred CCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......++++++||++|. ++++++||.+
T Consensus 130 ----------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 ----------SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ----------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 000234689999999998 9999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=169.30 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=113.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||+++|+++.+.....++.... ........+..+.+.+|||||++++......+++.+|++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~ 75 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-----YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVF 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-----eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEE
Confidence 489999999999999999999998744344333211 122233446667899999999998888888888999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH---------HHHHHHHHHHHHHhhh
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---------RKQMEKEIDKLRASRS 214 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---------~~~l~~~l~~~~~~~~ 214 (268)
++|+|+++. .++..... |+..+.... .+.|+++|+||+|+......... .+...+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~---------- 140 (171)
T cd00157 76 LICFSVDSP-SSFENVKTKWIPEIRHYC----PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK---------- 140 (171)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHH----------
Confidence 999999997 66776655 444444332 58999999999999865533211 000000
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+....+..+++++||++|+ +++++++|.+
T Consensus 141 ---------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 ---------------------LAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ---------------------HHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1111233489999999998 9999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=175.02 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=118.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.. ..++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED-----LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 356899999999999999999999887632 223333222223344556667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. +++..+..++...+.... ...+.|+++|+||+|+........ +.......
T Consensus 87 d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~-------------- 148 (211)
T PLN03118 87 QGIILVYDVTRR-ETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSR--EEGMALAK-------------- 148 (211)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCH--HHHHHHHH--------------
Confidence 999999999997 778888765544433211 125689999999999975433211 11111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.|++|||++|. +++++++|.+.+
T Consensus 149 ------------------~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 149 ------------------EHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=169.78 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=92.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|++|+|||||++++.++.+...+.++. . ..+...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~ 75 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA----F-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVF 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----e-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEE
Confidence 489999999999999999999888755433332 1 22223345566668899999999999999989999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|+|||+++. ++++.+. .|+..+.... .+.|+++|+||+|+..
T Consensus 76 i~v~d~~~~-~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~ 118 (173)
T cd04130 76 LLCFSVVNP-SSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRT 118 (173)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhcc
Confidence 999999997 7788875 5666665431 5799999999999964
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=166.17 Aligned_cols=156 Identities=24% Similarity=0.337 Sum_probs=117.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|||||||++++.++.+.....++.... .........+....+.+||+||+..+......+++.+|++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~i 76 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVD----FKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGA 76 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeee----eEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEE
Confidence 479999999999999999999988755433333222 2222233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. +++..+..|+..+..... .+.|+++++||+|+... ...+++.+...
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (159)
T cd00154 77 ILVYDITNR-ESFENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQFAK------------------- 133 (159)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHHHHH-------------------
Confidence 999999996 778888898888877532 57999999999999622 22222222111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
..+++++++||++|+ +++++++|.+
T Consensus 134 -----------------~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 -----------------ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred -----------------HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 124589999999998 9999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-25 Score=156.40 Aligned_cols=165 Identities=23% Similarity=0.417 Sum_probs=137.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..++++++++|..++||||++++|..+.. ...++++..++.+.++.. +.+++||.+|++..+..|.+|+.+
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVtykN--------~kfNvwdvGGqd~iRplWrhYy~g 84 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKN--------VKFNVWDVGGQDKIRPLWRHYYTG 84 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEeee--------eEEeeeeccCchhhhHHHHhhccC
Confidence 35799999999999999999999998763 234555555544444433 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
..++|||+|+.+. +.+++.++.+..++.+... .+.|++|.+||.|+..+..+.++.+.++- +.+
T Consensus 85 tqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A~~pqei~d~leL--e~~----------- 148 (180)
T KOG0071|consen 85 TQGLIFVVDSADR-DRIEEARNELHRIINDREM--RDAIILILANKQDLPDAMKPQEIQDKLEL--ERI----------- 148 (180)
T ss_pred CceEEEEEeccch-hhHHHHHHHHHHHhCCHhh--hcceEEEEecCcccccccCHHHHHHHhcc--ccc-----------
Confidence 9999999999998 7899999999999987654 78999999999999999999998887762 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...++-+.+|||.+|+ +.+-+.||.+.+++
T Consensus 149 ------------------r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 149 ------------------RDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ------------------cCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 1456778999999999 99999999987764
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=174.41 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=118.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+...+.++.. ... .....+.+..+.+++|||||+.++...+..+++.+|++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~----~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vi 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE----EMH-RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFA 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh----hhe-eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEE
Confidence 689999999999999999999887543333221 111 122344555578999999999999888889999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .+++.+..|+..+..... ..++|+++|+||+|+......... +...+...
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~~------------------ 133 (198)
T cd04147 76 LVYAVDDP-ESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPA-KDALSTVE------------------ 133 (198)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccH-HHHHHHHH------------------
Confidence 99999997 788989888888776532 257999999999999653211111 11111000
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+..++++||++|. ++++++||.+.+.
T Consensus 134 -------------~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 134 -------------LDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred -------------hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 0123468999999998 9999999998754
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=171.03 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
++.+||+++|.+|||||||++++.++.+. ..+.++.... + ....+..+|..+.+.+||++|++.+......+++.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~---~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~ 77 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR---Y-AVNTVEVYGQEKYLILREVGEDEVAILLNDAELAA 77 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc---e-EEEEEEECCeEEEEEEEecCCcccccccchhhhhc
Confidence 35689999999999999999999999885 4444433222 1 11223445666789999999999998888999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|++++ .+++.+..|+..+... .++|+++|+||+|+....... ...+.+.+.
T Consensus 78 ~d~~llv~d~~~~-~s~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~-------------- 137 (169)
T cd01892 78 CDVACLVYDSSDP-KSFSYCAEVYKKYFML-----GEIPCLFVAAKADLDEQQQRYEVQPDEFCRK-------------- 137 (169)
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHhccC-----CCCeEEEEEEcccccccccccccCHHHHHHH--------------
Confidence 9999999999997 7788777777654321 479999999999996432110 001111110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...++++||++|+ ++++++.|.+.+
T Consensus 138 --------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 --------------------LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --------------------cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 111135899999998 999999888753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=158.04 Aligned_cols=164 Identities=25% Similarity=0.304 Sum_probs=132.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
..+..+.++|..++|||||+|.+..+.+.+.-+++.+.+...+ ....+.+.+||.||+.+++..|+.|++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~--------tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV--------TKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe--------ccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 4677899999999999999999998887655455444332211 12227899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++||+|++++ +.++...+.+.+++..... .++|+++++||.|+..+.....+.+.+.-
T Consensus 90 ~aivY~VDaad~-~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~AL~~~~li~rmgL----------------- 149 (186)
T KOG0075|consen 90 SAIVYVVDAADP-DKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGALSKIALIERMGL----------------- 149 (186)
T ss_pred cEEEEEeecCCc-ccchhhHHHHHHHhcchhh--cCCcEEEecccccCcccccHHHHHHHhCc-----------------
Confidence 999999999997 8899999999999987664 79999999999999988777665544431
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
-+-.+..+.++.+|+++.. |+.+.+||.++-+
T Consensus 150 --------------~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 150 --------------SSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred --------------cccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 0111567899999999987 9999999998754
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-25 Score=169.44 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=113.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~~d~i 144 (268)
+|+++|++|||||||++++..+.+...+.++.. .. +......++..+.+.+|||||+.. .......+++.+|++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~----~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~ 75 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE----SL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGF 75 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH----Hh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEE
Confidence 589999999999999999998776443333221 11 122234456667899999999985 345677889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. ++++.+..|+..+..... ...+.|+++|+||+|+........ +...+..+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~----------------- 134 (165)
T cd04146 76 VLVYSITDR-SSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVST--EEGEKLAS----------------- 134 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCH--HHHHHHHH-----------------
Confidence 999999998 789888888776665321 125899999999999864322111 01111000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccC-C-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 266 (268)
..+.+|++|||++| + ++++++++.+.+
T Consensus 135 ---------------~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 135 ---------------ELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred ---------------HcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11247999999998 4 999999998754
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=175.28 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc-CCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP-QAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~-~~d 142 (268)
+||+++|++|||||||++++..+.+. ..+.+ +.+.......+.+++..+.+.+|||||++. .....+++ .+|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~----t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad 74 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDA----SGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGD 74 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCC----CccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCC
Confidence 48999999999999999999888764 22222 221111222234455667899999999982 23345566 899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||+++. .++..+..|+..+..... ..+.|+++|+||+|+........ ..+.+..
T Consensus 75 ~iilV~d~td~-~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~----------------- 134 (221)
T cd04148 75 AFVVVYSVTDR-SSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSVQEGRACAV----------------- 134 (221)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecHHHHHHHHH-----------------
Confidence 99999999998 789988888887766432 25899999999999965432111 0111110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|+++||++|. +++++++|.+.+
T Consensus 135 ------------------~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 135 ------------------VFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=166.90 Aligned_cols=163 Identities=19% Similarity=0.280 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC-------cccccceeecc--ccceEEe--eccccc---CCceeeEEEEeCCCCCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSMEP--NEDTFVL--HSESTK---KGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~~~~~--~~~~~~~--~~~~~~---~~~~~~~~i~DtpG~~~~ 130 (268)
++|+++|++|||||||+++|++.. +......+... ..+.... .....+ ++..+.+.+|||||++++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998742 11111111100 0000000 001111 345578999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...+..+++.+|++|+|+|++++ .+......+. .+.. .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~-~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQG-VEAQTLANFY-LALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHH-HHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 99999999999999999999986 3444443332 2222 578999999999986432 2222222221100
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|+ +++++++|.+.+|+
T Consensus 149 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 149 -----------------------------LDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred -----------------------------CCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 011258999999999 99999999998875
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=165.33 Aligned_cols=159 Identities=21% Similarity=0.386 Sum_probs=116.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.+..+.. ..++.+.. .. .+...+ ..+.+||+||+..+...+..+++.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~-~~-~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFN-IK-TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcc-eE-EEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence 567899999999999999999999876522 22222211 11 122234 5789999999998888889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..++|+++++||+|+......+++.+.+.
T Consensus 83 ~~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~i~~~l~------------------ 141 (173)
T cd04155 83 DCLIYVIDSADK-KRLEEAGAELVELLEEEK--LAGVPVLVFANKQDLATAAPAEEIAEALN------------------ 141 (173)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECCCCccCCCHHHHHHHcC------------------
Confidence 999999999986 667777778777765432 25799999999999976544433322211
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...+ ....++++|||++|+ ++++++||.+
T Consensus 142 --------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 --------------LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred --------------CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 0011 234578899999999 9999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=163.82 Aligned_cols=159 Identities=17% Similarity=0.266 Sum_probs=117.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||+++++++.+.....++.. ..........+..+.+.+||+||+..+......+++.+|+++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-----DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFI 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-----HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEE
Confidence 689999999999999999998876443333222 122223334455578999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. +++.....++..+...... ...|+++|+||+|+....... .+........
T Consensus 76 ~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------------- 133 (160)
T cd00876 76 LVYSITDR-ESFEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVS--KEEGKALAKE----------------- 133 (160)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceec--HHHHHHHHHH-----------------
Confidence 99999997 7788888888888765321 589999999999997632211 1111111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++||++|+ +++++++|.+++
T Consensus 134 ---------------~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 134 ---------------WGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ---------------cCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 12479999999998 999999998763
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=155.08 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=121.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...|++++|.+.+|||||+.+..++.|......+.+.. +..+. +....+.+.+++|||+|+++|+...-.|+++++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid---FKvKT-vyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID---FKVKT-VYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeee---EEEeE-eeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 45699999999999999999999999866555544322 33332 333445589999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. +++..+..|...+..... .+.|+|+|+||||+..++... +--..+..
T Consensus 96 gfiLmyDitNe-eSf~svqdw~tqIktysw---~naqvilvgnKCDmd~eRvis~e~g~~l~~----------------- 154 (193)
T KOG0093|consen 96 GFILMYDITNE-ESFNSVQDWITQIKTYSW---DNAQVILVGNKCDMDSERVISHERGRQLAD----------------- 154 (193)
T ss_pred eEEEEEecCCH-HHHHHHHHHHHHheeeec---cCceEEEEecccCCccceeeeHHHHHHHHH-----------------
Confidence 99999999997 899999999998877643 899999999999998766432 11222222
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
...+.|||+|||.+- ++++++.+.
T Consensus 155 ------------------~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 155 ------------------QLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred ------------------HhChHHhhhcccccccHHHHHHHHH
Confidence 123479999999985 666655443
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=166.49 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=117.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++.... +.......+..+.+.+|||||+.++...+..++..++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 76 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENT-----FSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGY 76 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhh-----EEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEE
Confidence 589999999999999999999887644333322211 112233345557889999999999998999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .+++.+..++..+.+... ..+.|+++|+||+|+........ +......+
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~----------------- 134 (180)
T cd04137 77 ILVYSVTSR-KSFEVVKVIYDKILDMLG--KESVPIVLVGNKSDLHTQRQVST--EEGKELAE----------------- 134 (180)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEchhhhhcCccCH--HHHHHHHH-----------------
Confidence 999999997 788899988888877532 25789999999999864321111 01111011
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++|+ ++++++|+.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 135 ---------------SWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112478999999998 999999998653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=164.47 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=113.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|++|+|||||++++..+.+.....++ .... +......++....+.+|||+|++.+......+++.+|++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t----~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ 76 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPT----VFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVI 76 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----ccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEE
Confidence 58999999999999999999987775433222 2111 122234456557889999999998877777788999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH---HHHH-HHHHHHHHHhhhccccc
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---RKQM-EKEIDKLRASRSAVSEA 219 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~l-~~~l~~~~~~~~~~~~~ 219 (268)
++|+|.++. +++..+. .|+..+.... .+.|+++|+||+|+.......+. .... ......
T Consensus 77 llv~~i~~~-~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (187)
T cd04129 77 LIGFAVDTP-DSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR----------- 140 (187)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH-----------
Confidence 999999987 7888886 4666665432 57999999999998543211100 0000 000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
++...+..+|++|||++|. ++++++++.+.+
T Consensus 141 ----------------~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 141 ----------------VAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ----------------HHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 0111222479999999999 999999998653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=166.71 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=120.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|++|||||||++++..+.+...+.++.... ........++..+.+.+|||+|++++...+..++..+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVE----VHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE----EEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 467899999999999999999988887754444444322 2222233355568999999999999988889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++++|+|+++. .++..+..|+..+.... .+.|+++++||+|+.......+..+ +. +
T Consensus 83 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~~~~~~-~~---~-------------- 139 (215)
T PTZ00132 83 QCAIIMFDVTSR-ITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVKARQIT-FH---R-------------- 139 (215)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCCHHHHH-HH---H--------------
Confidence 999999999997 78999988988887542 5789999999999864322111111 10 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|. +++.+.||.+.+
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 140 ------------------KKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223578999999998 999999988754
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=172.08 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=103.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh--------hHhhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------KLDEF 137 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------~~~~~ 137 (268)
+|+++|.+|||||||+|+|++.++ ...+..+++++.........++ ..+.+|||||+.+... ....+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~---~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI---SITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE---eecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence 689999999999999999999875 2233334444433332222233 4789999999765322 13456
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+++. .+.. .++...+.. .+.|+++|+||+|+... +...+.+....+
T Consensus 77 l~~aDvvl~VvD~~~~-~~~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~---------- 134 (270)
T TIGR00436 77 IGGVDLILFVVDSDQW-NGDG---EFVLTKLQN-----LKRPVVLTRNKLDNKFK---DKLLPLIDKYAI---------- 134 (270)
T ss_pred HhhCCEEEEEEECCCC-CchH---HHHHHHHHh-----cCCCEEEEEECeeCCCH---HHHHHHHHHHHh----------
Confidence 7899999999999986 4332 333333332 57899999999999632 222222111100
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....+++++||++|+ +++|.++|.+.+++
T Consensus 135 ---------------------~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 135 ---------------------LEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ---------------------hcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 0111268999999999 99999999998875
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=158.68 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=107.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.|+++|++|+|||||+++|..+.+......+.......... ... +....+.+|||||+..+...+..+++.+|+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~ 76 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEV----PAEVLKIPGITFIDTPGHEAFTNMRARGASLTDI 76 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEE----ecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCE
Confidence 369999999999999999999887644322111111111111 111 123689999999999988888889999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. . .......+..+.. .++|+++|+||+|+.... .+.....+. .+....
T Consensus 77 il~v~d~~~~-~-~~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~-~~~~~~~~~----~~~~~~---------- 133 (168)
T cd01887 77 AILVVAADDG-V-MPQTIEAIKLAKA------ANVPFIVALNKIDKPNAN-PERVKNELS----ELGLQG---------- 133 (168)
T ss_pred EEEEEECCCC-c-cHHHHHHHHHHHH------cCCCEEEEEEceeccccc-HHHHHHHHH----Hhhccc----------
Confidence 9999999985 2 2222222332222 578999999999986432 222222221 110000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.......++++++||++|+ ++++++||.++..
T Consensus 134 ------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 134 ------------EDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ------------cccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0011234689999999999 9999999988753
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=158.26 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=99.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------hHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------KLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------~~~ 135 (268)
++|+++|++|+|||||++++.++.+..... +..+...........+ +.+++|||||+.+... ...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPY----PFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAIT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCC----CCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHH
Confidence 479999999999999999999987632111 1111111111112223 6899999999853110 011
Q ss_pred hhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 136 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.....+|++++|+|+++... ++.....|+..+.... .+.|+++|+||+|+.......+ ..+ +.
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~----~~~-~~------- 138 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLTFEDLSE----IEE-EE------- 138 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCchhhHHH----HHH-hh-------
Confidence 11123689999999998622 3455556666554321 4799999999999975433222 111 00
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+++++|||++|+ ++++++||.+.+
T Consensus 139 -----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 -----------------------E-LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -----------------------h-hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 0 234579999999999 999999998865
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=176.42 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=104.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hh-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PK------- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~------- 133 (268)
.+..+|+++|.+|||||||+|+|+++.+. ..+..+++++......+..++ .++.+|||||+.+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~---ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS---IVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee---eccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 35569999999999999999999988762 222233333222223334444 578999999985422 11
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++++|+|+.+. +.....++...+.. .+.|.++|+||+|+... ...+ +.+.++..
T Consensus 125 ~~~~l~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~~---- 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTEN---- 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHhc----
Confidence 11347899999999998774 44444444444332 45678899999999643 2222 22211110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|+ ++++++||.+++++
T Consensus 188 --------------------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 --------------------------HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred --------------------------CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 112479999999998 99999999999875
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=157.88 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=98.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC---cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+++|++|||||||+++|++.. +......+....... ....+.+ ...+.+|||||++++......+++.+|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~----~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad 76 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF----AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGID 76 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee----EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCC
Confidence 68999999999999999998643 211111111111111 1122221 258999999999988877778899999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. . .......+..+ ... ...|+++|+||+|+..........+.+.+.+...
T Consensus 77 ~ii~V~d~~~~-~-~~~~~~~~~~~-~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~------------- 136 (164)
T cd04171 77 LVLLVVAADEG-I-MPQTREHLEIL-ELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT------------- 136 (164)
T ss_pred EEEEEEECCCC-c-cHhHHHHHHHH-HHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc-------------
Confidence 99999999874 1 22222332222 211 2349999999999975322222222222222110
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. ...++++++||++|+ ++++++++.+
T Consensus 137 ---------------~-~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 137 ---------------F-LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ---------------C-cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 124579999999998 9999998865
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=152.74 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
..++++++|++-+|||||+..++.++|..-. +|+.+...+..-+ ...|..+++++|||+|+++|++....|++++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels----dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS----DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC----CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 3578999999999999999999999986544 3344333332222 2246668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
-++++|+|.++. ++|+.+..|+.+...+.. .+..+-+.+|++|+||...+.+ ++. +.+.+
T Consensus 83 vgvllvyditnr-~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt~EEa-EklAa--------------- 144 (213)
T KOG0091|consen 83 VGVLLVYDITNR-ESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVTAEEA-EKLAA--------------- 144 (213)
T ss_pred cceEEEEeccch-hhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhccccHHHH-HHHHH---------------
Confidence 999999999998 899999999999877644 1244456799999999865433 221 12221
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....|+|+||++|. +++-++.|.+.
T Consensus 145 --------------------~hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 145 --------------------SHGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred --------------------hcCceEEEecccCCCcHHHHHHHHHHH
Confidence 445789999999997 88877776653
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=162.34 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc--CCcccccc-----ee---eccccceEEeecccccCCceeeEEEEeCCCCCCchhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TS---MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
.++|+++|.+|+|||||+++|+. +.+..... .+ ..++.+.........+....+.+.+|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999987 44432210 00 0011111111111122233478999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
+..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+.... .....+.+...++.+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~--~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~--- 149 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELG--- 149 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhC---
Confidence 99999999999999999985 23333344443332 578999999999997532 2222333332222110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 267 (268)
......+++++++||++|. +++|.+.|.+++|
T Consensus 150 ----------------------~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 150 ----------------------ATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred ----------------------CccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 0000124589999999984 4566777777665
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=166.34 Aligned_cols=159 Identities=25% Similarity=0.348 Sum_probs=120.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------- 135 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------- 135 (268)
+.-.|+++|.||+|||||+|++.+.+. .+.|..+++++..+....+.++ .++.++||||....+....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 445699999999999999999999988 7788888888888877666554 6899999999766554433
Q ss_pred -hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhh
Q 024385 136 -EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 -~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~ 213 (268)
..+..+|+++||+|+.+. +....+++.+.+.. .+.|+++++||+|....... ....+.+..
T Consensus 80 ~~sl~dvDlilfvvd~~~~---~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~--------- 142 (298)
T COG1159 80 RSALKDVDLILFVVDADEG---WGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKK--------- 142 (298)
T ss_pred HHHhccCcEEEEEEecccc---CCccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHh---------
Confidence 456789999999999996 34455555555542 46899999999999865442 111111111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
......++++||++|. ++.|.+.+.+++|+
T Consensus 143 -------------------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 143 -------------------------LLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred -------------------------hCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 0222379999999999 99999999999874
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-25 Score=155.46 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=124.4
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
+++|++++|||+|+-|+..+.|-.+.. -.+.+....+..+..++..+++++|||+|+++|++....|++.+|+++++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~f---istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccccCccCceEEEEEeccCceecCce---eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeee
Confidence 368999999999999998888744332 23455566677788899999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 148 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 148 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
+|+.+. .+|+.+..|+.++.+... ..+.+.+++||+|+..++.+ .+--+.+.+
T Consensus 78 ydiank-asfdn~~~wlsei~ey~k---~~v~l~llgnk~d~a~er~v~~ddg~kla~---------------------- 131 (192)
T KOG0083|consen 78 YDIANK-ASFDNCQAWLSEIHEYAK---EAVALMLLGNKCDLAHERAVKRDDGEKLAE---------------------- 131 (192)
T ss_pred eecccc-hhHHHHHHHHHHHHHHHH---hhHhHhhhccccccchhhccccchHHHHHH----------------------
Confidence 999998 899999999999988754 78889999999999654322 111222222
Q ss_pred CCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|.|+|||||- ++-.+-.|.+.+
T Consensus 132 -------------~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 -------------AYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred -------------HHCCCceeccccccccHhHHHHHHHHHH
Confidence 234689999999996 776666666543
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=147.29 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=121.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++.+++|+-|+|||+|+.+++..+|-.....++..+.++.. +.+.|+.++++||||+|+++|+...+.|++++
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri----ievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI----IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE----EEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34578999999999999999999999885544444444333322 34468889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+.++|+|.+.. ++...+..|+.+...... ++..+++++||.|+...+++ ++.++..+
T Consensus 85 agalmvyditrr-stynhlsswl~dar~ltn---pnt~i~lignkadle~qrdv~yeeak~fae---------------- 144 (215)
T KOG0097|consen 85 AGALMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIFLIGNKADLESQRDVTYEEAKEFAE---------------- 144 (215)
T ss_pred cceeEEEEehhh-hhhhhHHHHHhhhhccCC---CceEEEEecchhhhhhcccCcHHHHHHHHh----------------
Confidence 999999999998 789999999998877544 78889999999999875543 33322222
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhH
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l 258 (268)
++...|+++|||+|+ +++.
T Consensus 145 --------------------engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 145 --------------------ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred --------------------hcCeEEEEecccccCcHHHH
Confidence 456789999999998 6654
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=153.79 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=126.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.-.+|++++|..-+|||||+-|+..++|...-.++.... ..+..+.+.+....+.||||+|+++|..+-+-|++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQAS----F~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQAS----FQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHH----HhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 346799999999999999999999999966555544322 2233455566778899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH--HHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++++|||.++. ++|+.+..|..++.... ...+-++||+||+||...+.+. +.....+
T Consensus 87 nGalLVyDITDr-dSFqKVKnWV~Elr~ml---Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe---------------- 146 (218)
T KOG0088|consen 87 NGALLVYDITDR-DSFQKVKNWVLELRTML---GNEIELLIVGNKIDLEEERQVTRQEAEAYAE---------------- 146 (218)
T ss_pred CceEEEEeccch-HHHHHHHHHHHHHHHHh---CCeeEEEEecCcccHHHhhhhhHHHHHHHHH----------------
Confidence 999999999998 89999999999998764 3788999999999997654332 2222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....++++||+... |.++++.|.+.
T Consensus 147 --------------------svGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 147 --------------------SVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred --------------------hhchhheecccccccCHHHHHHHHHHH
Confidence 123468999999988 99998877653
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=158.79 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=112.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceee------------ccccceEEeecccccCCceeeEEEEeCCCCCCchhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
+|+++|.+|+|||||+|+|.+........... ..+.+...........+ ..+.+|||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 48999999999999999998876543221111 00010000001111122 57899999999998888
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
+..+++.+|++++|+|+.++ .. .....++..... .+.|+++|+||+|+..........+.+.+.++......
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~-~~-~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEG-VQ-PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCC-Cc-HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 99999999999999999986 22 223333333322 58899999999999864444444444443333211000
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.. ... +. .....+++++||++|. +++++++|.+++||
T Consensus 151 ~~---------------~~~--~~-~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 151 TK---------------EEG--TR-NGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred hh---------------hhh--cc-cCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 00 000 00 0235689999999999 99999999999886
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=154.82 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----hhhHh---h
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----RPKLD---E 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----~~~~~---~ 136 (268)
+|+++|++|||||||+|+|.+...... ..++..+..+... ..+. ..+.+|||||+.+. ..... .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~------~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR------VDDG-RSFVVADIPGLIEGASEGKGLGHRFLR 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE------cCCC-CeEEEEecCcccCcccccCCchHHHHH
Confidence 589999999999999999997653111 1112222222221 2221 37899999997421 12222 3
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
.++.+|++++|+|+++..++++....|...+..... ...++|+++|+||+|+.......+..+.+ ...
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~-------- 142 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFELLKEL---LKE-------- 142 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHHHHHH---Hhh--------
Confidence 345699999999999852357777777766655321 11478999999999997644332221111 110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. ++++++||.+.+
T Consensus 143 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 143 -----------------------LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred -----------------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 123478999999998 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=158.53 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC----Cccccc-----ceeeccccceEEeecc------cccCCceeeEEEEeCCCCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG----STHQGT-----VTSMEPNEDTFVLHSE------STKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~DtpG~~~ 129 (268)
.+|+++|++|+|||||+++|+.. .+.... ..+.........+... ....+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999873 111101 0122222111211100 00123347899999999976
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
+........+.+|++++|+|++++ ........+ . +... .+.|+++|+||+|+......+...+.+.+.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~-~~~~~~~~~-~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKG-IQTQTAECL-V-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCC-ccHHHHHHH-H-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 555554556778999999999986 222222211 1 1221 4679999999999975443333333343333321
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+... ..+++++++||++|+ +++|+++|...++|
T Consensus 153 --------------------------~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 --------------------------LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred --------------------------HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 0000 134689999999999 99999999998876
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-24 Score=154.62 Aligned_cols=128 Identities=23% Similarity=0.377 Sum_probs=102.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeecc--ccceEEeeccc---ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP--NEDTFVLHSES---TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+++.+|++|+||||++.+.+.++|...-++++.. ...+..++..- .-.++.+.+++|||+|+++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 36788999999999999999999997655555432 22333333221 11344578999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
.+-++++++|.++. .+|-.+.+|+.++..++.. .+.-|++++||+||.+.+.+
T Consensus 90 DAMGFlLiFDlT~e-qSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~V 142 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSE-QSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVV 142 (219)
T ss_pred hhccceEEEeccch-HHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhh
Confidence 99999999999997 8999999999999888764 67779999999999875544
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=171.92 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChH---HHHHHHHHHH---HHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHH
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPT---QLYIACAVLL---LTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~ 82 (268)
+.+.+.+|++.+-..+..+...+.-+.-. .......... +..+.... .....+...+|+++|++|+|||||+|
T Consensus 143 ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN 221 (442)
T TIGR00450 143 LDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLN 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHH
Confidence 34556778877777766664444433211 1111111111 11111111 11223567899999999999999999
Q ss_pred HHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------HhhhccCCCEEEEEEeCCCCC
Q 024385 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDEFLPQAAGIVFVVDALEFL 154 (268)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~ 154 (268)
+|++... ...+..+++++......+.++| ..+.+|||||+.++... ...+++.+|++++|+|++++
T Consensus 222 ~L~~~~~---aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~- 295 (442)
T TIGR00450 222 ALLKQDR---AIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP- 295 (442)
T ss_pred HHhCCCC---cccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-
Confidence 9998753 1222334445555555566666 57899999998765433 23578899999999999987
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 155 PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.+.... |+..+.. .+.|+++|+||+|+...
T Consensus 296 ~s~~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 296 LTKDDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred CChhHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 555443 5554432 57899999999999643
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=173.97 Aligned_cols=201 Identities=22% Similarity=0.219 Sum_probs=125.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChH------HHHHHHHHHHHHHHHH---HHHHHHhhcCCCeEEEEcCCCCcHHH
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPT------QLYIACAVLLLTTALL---LLLQVFRRKKSTTIVLAGLSGSGKTV 79 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~ivG~~~~GKSs 79 (268)
+++.+..|++.+.+....+...+.-+.-. .........+...+.. ...+....+...+|+++|.+|+||||
T Consensus 151 l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSS 230 (449)
T PRK05291 151 LSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSS 230 (449)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHH
Confidence 45667888887777766654333322211 1111111111111111 11111122457899999999999999
Q ss_pred HHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------HhhhccCCCEEEEEEeCC
Q 024385 80 LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 80 Li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~~~~~~d~ii~v~d~~ 151 (268)
|+|+|++... ...+..+.++.......+.++| ..+.+|||||+.++... ...+++.+|++++|+|++
T Consensus 231 Lln~L~~~~~---a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 231 LLNALLGEER---AIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred HHHHHhCCCC---cccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 9999998764 1222233333343444444555 57899999998765432 234678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCC
Q 024385 152 EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPG 231 (268)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (268)
++ .+..... .+.. ..+.|+++|+||+|+....... .
T Consensus 306 ~~-~s~~~~~-~l~~--------~~~~piiiV~NK~DL~~~~~~~----------~------------------------ 341 (449)
T PRK05291 306 EP-LTEEDDE-ILEE--------LKDKPVIVVLNKADLTGEIDLE----------E------------------------ 341 (449)
T ss_pred CC-CChhHHH-HHHh--------cCCCCcEEEEEhhhccccchhh----------h------------------------
Confidence 87 4444332 2222 1678999999999996532211 0
Q ss_pred CCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 232 QAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 232 ~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|+ +++|+++|.+.+
T Consensus 342 --------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 342 --------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred --------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 112368999999998 999999998765
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=157.59 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeec-ccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHS-ESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.||+++|++|||||||++++..+.|...+.+++........... .....+..+.+.+|||+|++++......|++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 48999999999999999999999886554444432211111110 01123556889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC----------------ccCCCCcEEEEeecCCCCCC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNST----------------VVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~piivv~nK~Dl~~~ 192 (268)
+|+|||+++. ++++.+..|+.++..... ....++|+++|+||+|+...
T Consensus 81 iIlVyDvtn~-~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNR-KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcCh-HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999998 899999999999876421 11257899999999999754
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=157.99 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=126.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|.+|+|||+|+.++..+.|...+.++++ ..+.....+++..+.+.|+||+|++++......|++.+|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-----d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-----DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGD 76 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-----ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCc
Confidence 468999999999999999999999999776655554 344455666788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH-HHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++||++++. .||+.+..++..+++... ...+|+++||||+|+...+....- -+.+..
T Consensus 77 gF~lVysitd~-~SF~~~~~l~~~I~r~~~--~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~----------------- 136 (196)
T KOG0395|consen 77 GFLLVYSITDR-SSFEEAKQLREQILRVKG--RDDVPIILVGNKCDLERERQVSEEEGKALAR----------------- 136 (196)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCCEEEEEEcccchhccccCHHHHHHHHH-----------------
Confidence 99999999998 899999999999965443 266899999999999874322111 111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...+.|+|+||+... +++++.-|..
T Consensus 137 ------------------~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 137 ------------------SWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred ------------------hcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 234579999999986 8888776654
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=151.15 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFL 138 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~ 138 (268)
.+|+++|.||||||||+|+|++.+. .+.. -|+++.......+...+ ..+.++|+||...+... ...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~---~v~n-~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ---KVGN-WPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE---EEEE-STTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---eecC-CCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHH
Confidence 3799999999999999999999885 2222 24444333333344445 58999999996544322 33444
Q ss_pred --cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 139 --PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 139 --~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
...|++++|+|++.. ++....+.++++ .++|+++|+||+|+..........+.+.+.
T Consensus 75 ~~~~~D~ii~VvDa~~l----~r~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~----------- 133 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNL----ERNLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSER----------- 133 (156)
T ss_dssp HHTSSSEEEEEEEGGGH----HHHHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHHH-----------
T ss_pred hhcCCCEEEEECCCCCH----HHHHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHHH-----------
Confidence 589999999999884 555555566665 689999999999987655433223333332
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
.+++++++||++|+ +++|++.|
T Consensus 134 ------------------------Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 134 ------------------------LGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ------------------------HTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ------------------------hCCCEEEEEeCCCcCHHHHHhhC
Confidence 23589999999999 99999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=156.94 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccc--c----------------eeeccccceEEeecccccCCceeeEEEEeC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--V----------------TSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
+.++|+++|+.++|||||+.+|+...-.... . ............. .......++++||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~----~~~~~~~i~~iDt 77 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE----KNENNRKITLIDT 77 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----BTESSEEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----ccccccceeeccc
Confidence 4568999999999999999999754321000 0 0000111111111 0122368999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|.......++.+|++|+|+|+.++. .....+.+..+.. .++|+++|+||+|+. ..+..+.+++
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~------~~~p~ivvlNK~D~~----~~~~~~~~~~ 145 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDANDGI--QPQTEEHLKILRE------LGIPIIVVLNKMDLI----EKELEEIIEE 145 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHH------TT-SEEEEEETCTSS----HHHHHHHHHH
T ss_pred ccccceeecccceecccccceeeeeccccc--ccccccccccccc------cccceEEeeeeccch----hhhHHHHHHH
Confidence 999999999999999999999999999872 2334444444433 688999999999998 2222222222
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCC-ceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~-~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+..... .-. ..++++++||++|. +++|+++|.+++|
T Consensus 146 ~~~~l~~~~~-----------------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 146 IKEKLLKEYG-----------------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHTT-----------------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHhccccc-----------------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1112100100 001 35799999999999 9999999999987
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=152.97 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=101.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
+..++|+++|++|||||||+|++++..+... ..++..+.... +...+. ..+.+|||||+.+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~------~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~ 111 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRR------LRLPDG-REVLLTDTVGFIRDLPHQLVEAF 111 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEE------EEecCC-ceEEEeCCCccccCCCHHHHHHH
Confidence 4568999999999999999999998864221 12233322221 122232 37899999998432111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
....+..+|++++|+|++++ .+......+...+.... ..+.|+++|+||+|+....... ....
T Consensus 112 ~~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~~~l~~~~---~~~~~viiV~NK~Dl~~~~~~~-------~~~~---- 176 (204)
T cd01878 112 RSTLEEVAEADLLLHVVDASDP-DYEEQIETVEKVLKELG---AEDIPMILVLNKIDLLDDEELE-------ERLE---- 176 (204)
T ss_pred HHHHHHHhcCCeEEEEEECCCC-ChhhHHHHHHHHHHHcC---cCCCCEEEEEEccccCChHHHH-------HHhh----
Confidence 11235689999999999987 55555444443332221 1578999999999997543211 0000
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++++++|.+.+
T Consensus 177 ----------------------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 ----------------------------AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----------------------------cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 223579999999998 999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=147.24 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=110.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|+|||||++++..+.+.....+ +.+..........++..+.+.+||+||+.++...+..+.+.+++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKP----GTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES 76 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCC----CceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence 36899999999999999999998875433322 22222222223344544688999999999999888888999999
Q ss_pred EEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++.++|......++.... .+...+..... .+.|+++++||+|+.... ..+...+.+..
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~-------------- 135 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAK----LKTHVAFLFAK-------------- 135 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcch----hhHHHHHHHhh--------------
Confidence 999999977523444444 55555554432 388999999999997644 12222222221
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
....+++++||++|. +++++++|.
T Consensus 136 -----------------~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 136 -----------------LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred -----------------ccCCceEEeecCCCCCHHHHHHHhh
Confidence 122369999999999 999999885
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=161.79 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=98.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccc--eEEeecc----cc---cCCceeeEEEEeCCCCCCchh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--TFVLHSE----ST---KKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~--~~~~~~~----~~---~~~~~~~~~i~DtpG~~~~~~ 132 (268)
...+||+++|+.|||||||++++.++.+.....+++..... ...+... .. .+++.+.++||||+|+++|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 45789999999999999999999999875544444433221 1111100 00 113457899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc---------cCCCCcEEEEeecCCCCCC
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV---------VKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~piivv~nK~Dl~~~ 192 (268)
.+..|++++|++|+|||+++. .++..+..|+..+...... ...++|++||+||+||...
T Consensus 99 L~~~yyr~AdgiILVyDITdr-~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQR-RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999997 8899999999998765310 0135899999999999654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=164.19 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhhH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPKL 134 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~~ 134 (268)
...|+++|.||||||||+++++..+... ...+|..|..+...+. ++ ..+.+||+||..+ +...+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----~~--~~~~i~D~PGli~ga~~~~gLg~~f 230 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----DY--KSFVIADIPGLIEGASEGAGLGHRF 230 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----CC--cEEEEEeCCCccCCCCccccHHHHH
Confidence 4689999999999999999999765321 1234455544433221 22 4789999999753 22334
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.++++++|+|+++. ++++....|..++...... -.++|+++|+||+|+....... .+.+....+
T Consensus 231 lrhie~a~vlI~ViD~s~~-~s~e~~~~~~~EL~~~~~~-L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~~~------- 299 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAV-DPVEDYKTIRNELEKYSPE-LADKPRILVLNKIDLLDEEEER--EKRAALELA------- 299 (335)
T ss_pred HHHhhhcCEEEEEEcCCCC-CCHHHHHHHHHHHHHhhhh-cccCCeEEEEECcccCCchhHH--HHHHHHHHH-------
Confidence 5567789999999999986 5688888887777654210 1478999999999997543221 111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++++ +++++++|.+.+
T Consensus 300 -------------------------~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 300 -------------------------ALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred -------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998765
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=163.10 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~ 134 (268)
+...|+++|++|||||||+|+|++.++ ...+..+++++.........++ ..+.++||||..+.... .
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~---~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce---eecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHH
Confidence 445799999999999999999998875 2223334333333332222222 58999999998654322 3
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
...+..+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+..... ++.+..
T Consensus 79 ~~~~~~~D~il~vvd~~~~---~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~--~~~l~~~----~~~l~~--- 141 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEK---IGPGDEFILEKLKK-----VKTPVILVLNKIDLVKD--KEELLPL----LEELSE--- 141 (292)
T ss_pred HHHHhcCCEEEEEEeCCCC---CChhHHHHHHHHhh-----cCCCEEEEEECCcCCCC--HHHHHHH----HHHHHh---
Confidence 3466889999999999984 22333444444432 57899999999999732 2222222 222110
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....+++++||++|. +++++++|.+.+++
T Consensus 142 ------------------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 ------------------------LMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ------------------------hCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 0123478999999998 99999999998864
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=162.47 Aligned_cols=152 Identities=23% Similarity=0.328 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------ 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------ 135 (268)
+...+++++|.||+|||||+|.|.+... .+.|--|+++++.....+.++| +++.++||+|..+......
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~---AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR---AIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc---eEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHH
Confidence 6789999999999999999999999876 7778888999999999999999 8999999999876544432
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+++||.+++|+|++.+ .......+...+ ..+.|+++|.||+|+.........
T Consensus 290 s~~~i~~ADlvL~v~D~~~~---~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~~~~~~~--------------- 345 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQP---LDKEDLALIELL------PKKKPIIVVLNKADLVSKIELESE--------------- 345 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCC---CchhhHHHHHhc------ccCCCEEEEEechhcccccccchh---------------
Confidence 467889999999999995 122222222211 378999999999999875432111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
......+++.+||++|+ ++.|.+.|.+.+
T Consensus 346 ------------------------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 346 ------------------------KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ------------------------hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 01223378999999998 999999988764
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=174.53 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC-------cccccceee--cc--ccceEEeeccccc---CCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSM--EP--NEDTFVLHSESTK---KGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~~~--~~--~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~ 128 (268)
+.++++++|+.++|||||+++|+... +......+. +. +.+.......+.+ ++..+.+++||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999998642 111111110 00 1111111111111 4556899999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|...+..+++.+|++|+|+|++++ .+......|.. ... .++|+++|+||+|+.... .+...+.+.+.+.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~-~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg- 151 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYL-ALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIG- 151 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHH-HHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhC-
Confidence 9999999999999999999999987 44444444433 222 578999999999986432 2222222222110
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|. +++|+++|.+.+||
T Consensus 152 -------------------------------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 -------------------------------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -------------------------------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 001248999999999 99999999998874
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=148.36 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=95.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh--------hHhhhcc
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------KLDEFLP 139 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------~~~~~~~ 139 (268)
+++|.+|+|||||+++|.+.... ..+..+.++...........+ ..+.+|||||+.++.. ....+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---IVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---eecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 47999999999999999987531 111112222212222223334 5799999999988654 3446778
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|++++|+|+.+... .. ..++...+.. .+.|+++|+||+|+...... .+. +..
T Consensus 76 ~~d~ii~v~d~~~~~~-~~--~~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~----~~~----------- 129 (157)
T cd01894 76 EADVILFVVDGREGLT-PA--DEEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAE----FYS----------- 129 (157)
T ss_pred hCCEEEEEEeccccCC-cc--HHHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHH----HHh-----------
Confidence 8999999999987522 22 2233333332 46899999999999754221 111 110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|+ +++++++|.+++
T Consensus 130 --------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 130 --------------------LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred --------------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 011157899999999 999999998763
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=148.16 Aligned_cols=147 Identities=27% Similarity=0.347 Sum_probs=96.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhcc--C
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFLP--Q 140 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~~--~ 140 (268)
++|.+|+|||||++++.+..+..... ++++.......+.+++ ..+.+|||||+.++... ...++. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~----~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNW----PGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCC----CCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCC
Confidence 58999999999999999876432221 1111111112233344 47899999999876542 455564 8
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|+.+. .. ...++..+.. .++|+++|+||+|+..........+.+..
T Consensus 75 ~d~vi~v~d~~~~-~~---~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~---------------- 128 (158)
T cd01879 75 PDLIVNVVDATNL-ER---NLYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSE---------------- 128 (158)
T ss_pred CcEEEEEeeCCcc-hh---HHHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHH----------------
Confidence 9999999999886 32 2233333332 57899999999999765432221111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 129 -------------------~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 129 -------------------LLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -------------------hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 112478999999998 999999998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=153.13 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=104.2
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-------- 128 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-------- 128 (268)
+.......++|+++|++|+|||||+++++++.+......+ ++.+..... ... + ..+.+|||||+.
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~t~~~~~--~~~-~--~~l~l~DtpG~~~~~~~~~~ 89 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT--PGRTQLINF--FEV-N--DKLRLVDLPGYGYAKVSKEE 89 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--CCceeEEEE--Eec-C--CeEEEeCCCCCCCcCCCchH
Confidence 3344467789999999999999999999987642212111 111111110 111 2 478999999963
Q ss_pred --CchhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 129 --RLRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 129 --~~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
++......+++. ++++++|+|++.+ . .....++...+.. .+.|+++++||+|+......+...+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~--~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~ 161 (196)
T PRK00454 90 KEKWQKLIEEYLRTRENLKGVVLLIDSRHP-L--KELDLQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVR 161 (196)
T ss_pred HHHHHHHHHHHHHhCccceEEEEEEecCCC-C--CHHHHHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHH
Confidence 223334455554 4678889998875 2 2222233333332 5789999999999975433333333333
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+.++. ....++++||++|+ +++++++|.+.++|
T Consensus 162 ~~l~~--------------------------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 162 KALKF--------------------------------GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHh--------------------------------cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 22221 13478899999998 99999999999886
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=172.44 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=104.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~ 133 (268)
...++|+++|.+|||||||+|+|+++.. ......+++++........+.+ ..+.+|||||++. +...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~---~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE---AVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc---ccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHH
Confidence 3568999999999999999999998764 1222333444444444444555 4689999999863 3334
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++|+|+|++++ .+.. ...+...+.. .++|+++|+||+|+..... +. .. ...
T Consensus 111 ~~~~~~~aD~il~VvD~~~~-~s~~--~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~--~~----~~-~~~----- 170 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVG-ATAT--DEAVARVLRR-----SGKPVILAANKVDDERGEA--DA----AA-LWS----- 170 (472)
T ss_pred HHHHHHhCCEEEEEEECCCC-CCHH--HHHHHHHHHH-----cCCCEEEEEECccCCccch--hh----HH-HHh-----
Confidence 55678999999999999987 3322 2333333332 6799999999999864211 00 00 000
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ... ..+++||++|. +++|+++|.+.++
T Consensus 171 -------------~------------g~~-~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 171 -------------L------------GLG-EPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------------c------------CCC-CeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 0 001 24689999998 9999999988764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-21 Score=164.91 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCC--chhh-----
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--LRPK----- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--~~~~----- 133 (268)
..++|+++|.+|+|||||+|+|++..+... ..+|..+... .+.+.+. ..+.+|||||..+ ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------RLDLPDG-GEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE------EEEeCCC-ceEEEEecCcccccCCHHHHHHHH
Confidence 448999999999999999999998764211 1223333222 2233222 4789999999732 1111
Q ss_pred -HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 134 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 134 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
...++..+|++++|+|++++ .+......+. .++.... ..+.|+++|+||+|+.... .+. . ..
T Consensus 261 ~tle~~~~ADlil~VvD~s~~-~~~~~~~~~~-~~L~~l~--~~~~piIlV~NK~Dl~~~~---~v~----~-~~----- 323 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDP-DREEQIEAVE-KVLEELG--AEDIPQLLVYNKIDLLDEP---RIE----R-LE----- 323 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCC-chHHHHHHHH-HHHHHhc--cCCCCEEEEEEeecCCChH---hHH----H-HH-----
Confidence 12357889999999999987 5555544333 2333211 1478999999999996421 111 0 00
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++|+++|.+.+
T Consensus 324 ---------------------------~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 324 ---------------------------EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ---------------------------hCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 001247899999998 999999998754
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-22 Score=148.21 Aligned_cols=167 Identities=20% Similarity=0.311 Sum_probs=127.4
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCC---cc----cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGS---TH----QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
..+..+.++|+|+.++|||||+.++.... +. ....+++.-++++..+ .+ ..+.+||..|++..++
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v------~~--~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV------CN--APLSFWDLGGQESLRS 84 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee------cc--ceeEEEEcCChHHHHH
Confidence 34678999999999999999998875331 11 1112223333333222 22 5899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.|..|+..|+++||+||+++. +.++.....+..+..+... .++|+++.+||.|+.......++...+.. .+.+
T Consensus 85 lw~~yY~~~H~ii~viDa~~~-eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~--- 157 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDR-ERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI--- 157 (197)
T ss_pred HHHHHHHHhceeEEeecCCCH-HHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc---
Confidence 999999999999999999997 7788888888888876554 89999999999999888777776665553 1111
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
-.....|.+|||++|+ |++-.+|+.+.++
T Consensus 158 --------------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 --------------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred --------------------------CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 0334689999999999 9999999988764
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=152.34 Aligned_cols=162 Identities=22% Similarity=0.378 Sum_probs=98.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC-----------CCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH-----------SRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-----------~~~ 130 (268)
....+|+++|++|||||||+|++.++.+.... .++.+..... ... + .+.+|||||. +.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~----~~~~t~~~~~--~~~-~---~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK----RPGVTRKPNH--YDW-G---DFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----CCceeeCceE--Eee-c---ceEEEeCCccccccccCHHHHHHH
Confidence 35689999999999999999999987753322 2222221111 111 1 5799999994 445
Q ss_pred hhhHhhhcc----CCCEEEEEEeCCCCCCCH-H--------HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH
Q 024385 131 RPKLDEFLP----QAAGIVFVVDALEFLPNC-S--------AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF 197 (268)
Q Consensus 131 ~~~~~~~~~----~~d~ii~v~d~~~~~~~~-~--------~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 197 (268)
+..+..|+. .++++++|+|++.. ..+ . .....+...+.. .++|+++|+||+|+.... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~ 148 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSF-IEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DE 148 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccc-cccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HH
Confidence 555555553 46789999998764 111 0 111222333322 579999999999996533 11
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhcC
Q 024385 198 IRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVK 267 (268)
Q Consensus 198 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~ 267 (268)
..+.+.+.++. .. .+. ....+++++||++|.++++++||.+.++
T Consensus 149 ~~~~~~~~~~~---------------------~~---~~~--~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 149 VLDEIAERLGL---------------------YP---PWR--QWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHHHHhcC---------------------Cc---ccc--ccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 11222211110 00 000 0013689999999999999999998765
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-21 Score=161.84 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~ 133 (268)
....|+++|.+|||||||+++++...... ...+|..|+.+...+ .+ ...+.+|||||+.+. ...
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~------~~-~~~~~i~D~PGli~~a~~~~gLg~~ 228 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV------DD-GRSFVIADIPGLIEGASEGAGLGHR 228 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe------CC-ceEEEEEeCCCcccCCcccccHHHH
Confidence 34689999999999999999999865321 112344444443322 22 147899999997532 223
Q ss_pred HhhhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
+.+++..++++++|+|+++.. ++++....|..++..... ...+.|+++|+||+|+......++ +.+.+.+
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~----~~~~l~~--- 300 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAE----LLKELKK--- 300 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHH----HHHHHHH---
Confidence 445567899999999998641 345666666655544321 114789999999999975422211 1111111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+++++||++++ +++++++|.+.++
T Consensus 301 ----------------------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 301 ----------------------------ALGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred ----------------------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 112468999999999 9999999998763
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-22 Score=152.63 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...|+++||+.++|||+|+..+..+.|+..+++++.. .+...+.+ +|+.+.+.+|||+|+++|..++.-.+.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-----nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~t 77 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-----NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQT 77 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-----cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCC
Confidence 4579999999999999999999999999888887753 23344566 48889999999999999988777789999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++++||++.++ .+++.+ .+|+.++..+. ++.|+|+||+|.||..
T Consensus 78 dvfl~cfsv~~p-~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 78 DVFLLCFSVVSP-ESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRD 123 (198)
T ss_pred CEEEEEEEcCCh-hhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhh
Confidence 999999999998 788885 66777666654 8999999999999983
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=170.77 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---------- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---------- 133 (268)
..+++++|.+|+|||||+|+|++.... ..+..+.++.......+..++ ..+.+|||||+.+....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~---~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERV---IVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCee---ecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 478999999999999999999987641 112222333333333333445 47899999998654322
Q ss_pred -HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 134 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 134 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.. ..+ ..+.+.+.+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~-~~~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~--~~~-~~~~~~~~~~~~--- 312 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEG-ITEQD-LRIAGLILE------AGKALVIVVNKWDLVK--DEK-TREEFKKELRRK--- 312 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCC-ccHHH-HHHHHHHHH------cCCcEEEEEECcccCC--CHH-HHHHHHHHHHHh---
Confidence 13467899999999999987 33322 233333322 5789999999999972 111 122222222211
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+.. ...++++++||++|. ++++++++.+.
T Consensus 313 -----------------------~~~-~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 313 -----------------------LPF-LDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred -----------------------ccc-CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 111 123689999999998 99998887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=146.86 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP----------- 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~----------- 132 (268)
..+|+++|.+|+|||||++++++..... ....+..+..........++ ..+.+|||||+.+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---VSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---ccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHH
Confidence 4689999999999999999999875311 11112222122222233344 4678999999765421
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~ 210 (268)
....+++.+|++++|+|++++ .+... ...+..+.. .+.|+++++||+|+.... ..+.+.+.+.+.+.
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 145 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP--- 145 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCC-cchhH-HHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc---
Confidence 122356789999999999987 33322 223332222 568999999999997653 22222222222111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ....+++++||++|+ ++++++++.+.
T Consensus 146 ---------------------------~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 ---------------------------F-LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------------------------c-ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 0 123579999999999 99999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=171.63 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------chh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~~ 132 (268)
...+|+++|.+|||||||+|+|++..+. ..+..++++.......+..++ ..+.+|||||..+ +..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~---~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~ 284 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS---VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYAS 284 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc---cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHH
Confidence 4589999999999999999999987642 122223333333333344455 4678999999632 111
Q ss_pred h-HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 133 K-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 133 ~-~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
. ...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+..........+.+.+.+
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~-~s~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l----- 351 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEP-ISEQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDREL----- 351 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhc-----
Confidence 1 12467899999999999997 455444 33443332 6789999999999975322222222221111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ...++++++||++|. ++++++.+.+.+
T Consensus 352 -------------------------~~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 352 -------------------------AQ-VPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred -------------------------cc-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 10 122478999999998 999998887643
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=138.45 Aligned_cols=166 Identities=23% Similarity=0.401 Sum_probs=128.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..++.+++++|..|+|||||+++|.+... ..+.|+.+..... +..+|. +++++||.+|+...+..|..|+.+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-----~hltpT~GFn~k~--v~~~g~-f~LnvwDiGGqr~IRpyWsNYyen 85 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-----RHLTPTNGFNTKK--VEYDGT-FHLNVWDIGGQRGIRPYWSNYYEN 85 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-----hhccccCCcceEE--EeecCc-EEEEEEecCCccccchhhhhhhhc
Confidence 46789999999999999999999988753 2233333322211 222333 689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
.|++|||+|+++. ..++++...+.++++.... ..+|+.|..||.|+..+...+++...+.- ..++
T Consensus 86 vd~lIyVIDS~D~-krfeE~~~el~ELleeeKl--~~vpvlIfankQdlltaa~~eeia~klnl--~~lr---------- 150 (185)
T KOG0074|consen 86 VDGLIYVIDSTDE-KRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTAAKVEEIALKLNL--AGLR---------- 150 (185)
T ss_pred cceEEEEEeCCch-HhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhhcchHHHHHhcch--hhhh----------
Confidence 9999999998886 7789999999999886554 78999999999999988777766544331 1110
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+++-+|||++++ +..-.+|+.....|
T Consensus 151 -------------------dRswhIq~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 151 -------------------DRSWHIQECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred -------------------hceEEeeeCccccccCccCcchhhhcCCCC
Confidence 345789999999998 88888998876653
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=149.93 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=93.6
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR------- 129 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~------- 129 (268)
.++...+..+|+++|++|+|||||+|++.+..+......+...+.....+. .++ .+.+|||||...
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~---~~~liDtpG~~~~~~~~~~ 83 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE----VND---GFRLVDLPGYGYAKVSKEE 83 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE----eCC---cEEEEeCCCCccccCChhH
Confidence 344456789999999999999999999998763221111111111111111 122 589999999642
Q ss_pred ---chhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 130 ---LRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 130 ---~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+......|++. ++++++|+|++.+ - ......+...+.. .+.|+++|+||+|+......+...+.+.
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-~--~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~ 155 (179)
T TIGR03598 84 KEKWQKLIEEYLEKRENLKGVVLLMDIRHP-L--KELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIK 155 (179)
T ss_pred HHHHHHHHHHHHHhChhhcEEEEEecCCCC-C--CHHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 22233455553 5799999999885 2 2222233333332 5789999999999975433333333333
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 255 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i 255 (268)
+.+... ..+..++++||++|+ +
T Consensus 156 ~~l~~~------------------------------~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 156 KALKKD------------------------------ADDPSVQLFSSLKKTGI 178 (179)
T ss_pred HHHhhc------------------------------cCCCceEEEECCCCCCC
Confidence 333321 223479999999997 5
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=143.74 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
.+|+++|++|+|||||++++.+..... .+..+.++...........+ ..+.+|||||+.++... ...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI---VSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe---ccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 589999999999999999999876421 11112222222222223333 57899999998765432 234
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
++..+|++++|+|+++. .+......+.. ..+.|+++|+||+|+...... ..
T Consensus 77 ~~~~~~~~v~v~d~~~~-~~~~~~~~~~~---------~~~~~vi~v~nK~D~~~~~~~------~~------------- 127 (157)
T cd04164 77 AIEEADLVLFVIDASRG-LDEEDLEILEL---------PADKPIIVVLNKSDLLPDSEL------LS------------- 127 (157)
T ss_pred HHhhCCEEEEEEECCCC-CCHHHHHHHHh---------hcCCCEEEEEEchhcCCcccc------cc-------------
Confidence 66789999999999986 43333322221 168999999999999754322 00
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.....+++++||++|. +++|.++|.+.++
T Consensus 128 ----------------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 157 (157)
T cd04164 128 ----------------------LLAGKPIIAISAKTGEGLDELKEALLELAG 157 (157)
T ss_pred ----------------------ccCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 0223579999999998 9999999988653
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=151.57 Aligned_cols=172 Identities=20% Similarity=0.195 Sum_probs=126.5
Q ss_pred cHHhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCccc
Q 024385 12 GMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (268)
Q Consensus 12 ~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~ 91 (268)
...+..+..+++++|+.+++++.++...|+.....++..++.+ +...++++|+|.||||||||++++++.+.
T Consensus 122 ~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~I------dp~~pTivVaG~PNVGKSSlv~~lT~Akp-- 193 (346)
T COG1084 122 DPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAI------DPDLPTIVVAGYPNVGKSSLVRKLTTAKP-- 193 (346)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC------CCCCCeEEEecCCCCcHHHHHHHHhcCCC--
Confidence 4566777778999999999999999999999988888887776 56789999999999999999999998775
Q ss_pred ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh---------hhc-cCCCEEEEEEeCCCCC-CCHHHH
Q 024385 92 GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD---------EFL-PQAAGIVFVVDALEFL-PNCSAA 160 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~---------~~~-~~~d~ii~v~d~~~~~-~~~~~~ 160 (268)
.+.++..++....+.. +..++ .+++++||||.-+ ++.-. ..+ .-.++++|++|++..+ =+++..
T Consensus 194 -EvA~YPFTTK~i~vGh-fe~~~--~R~QvIDTPGlLD-RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q 268 (346)
T COG1084 194 -EVAPYPFTTKGIHVGH-FERGY--LRIQVIDTPGLLD-RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ 268 (346)
T ss_pred -ccCCCCccccceeEee-eecCC--ceEEEecCCcccC-CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH
Confidence 3444444433332221 22223 5899999999764 22211 112 2368899999998753 257777
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 161 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
...+.++... .+.|+++|+||+|.......+++...
T Consensus 269 ~~L~~eIk~~-----f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 269 ISLLEEIKEL-----FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHHHHHHHHh-----cCCCeEEEEecccccchhHHHHHHHH
Confidence 7888877765 45899999999999866555554444
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=163.20 Aligned_cols=152 Identities=24% Similarity=0.278 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------hhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------PKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~~~~ 135 (268)
+.|+++|.||||||||+|||++... .+.+-.|+++++.......+.+ ..+.++||+|.+... .+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~---AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI---AIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee---eEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 6799999999999999999999876 6777788888888888888888 469999999987433 2344
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+..||++|||+|+..+ +...++.+.+++.. .++|+++|+||+|-... +.....+.
T Consensus 79 ~Ai~eADvilfvVD~~~G---it~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~---e~~~~efy------------ 135 (444)
T COG1160 79 IAIEEADVILFVVDGREG---ITPADEEIAKILRR-----SKKPVILVVNKIDNLKA---EELAYEFY------------ 135 (444)
T ss_pred HHHHhCCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh---hhhHHHHH------------
Confidence 567889999999999997 45556666666653 67999999999997622 11111111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+ +--+.+++||..|. +.+|.+++.+.++
T Consensus 136 ----------sl-------------G~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 136 ----------SL-------------GFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ----------hc-------------CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 11 11257899999999 9999999999873
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=169.75 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=110.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.+..+.......++...+.+.+. +.+. ..+++||||||++|...+..+++.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~----~~~~-~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVE----NEDG-KMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEE----ECCC-cEEEEEECCCCcchhhHHHhhhccC
Confidence 4678999999999999999999998877543333333333332222 2221 2789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ . ..+..+.+..... .++|+++++||+|+... ..+.+.+.+.. ....
T Consensus 160 DiaILVVda~dg-v-~~qT~e~i~~~~~------~~vPiIVviNKiDl~~~-~~e~v~~~L~~----~g~~--------- 217 (587)
T TIGR00487 160 DIVVLVVAADDG-V-MPQTIEAISHAKA------ANVPIIVAINKIDKPEA-NPDRVKQELSE----YGLV--------- 217 (587)
T ss_pred CEEEEEEECCCC-C-CHhHHHHHHHHHH------cCCCEEEEEECcccccC-CHHHHHHHHHH----hhhh---------
Confidence 999999999885 2 2333333332222 67899999999999653 33333333221 1000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..+...++++++||++|+ +++++++|..
T Consensus 218 --------------~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 --------------PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred --------------HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 0011234589999999999 9999999854
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=144.08 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=86.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-----CchhhHhhhccC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-----RLRPKLDEFLPQ 140 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-----~~~~~~~~~~~~ 140 (268)
||+++|++|||||||++++.++.+. ..++.+ .. +.-.+|||||+. .++... ..++.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-~~-----------~~~~~iDt~G~~~~~~~~~~~~~-~~~~~ 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-VE-----------YNDGAIDTPGEYVENRRLYSALI-VTAAD 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-EE-----------EcCeeecCchhhhhhHHHHHHHH-HHhhc
Confidence 7999999999999999999987642 111111 11 111689999973 222222 35789
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|++++ .++.. ..|. .. ...|+++|+||+|+.+.... .+...+.++.
T Consensus 63 ad~vilv~d~~~~-~s~~~-~~~~-~~--------~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~------------ 116 (142)
T TIGR02528 63 ADVIALVQSATDP-ESRFP-PGFA-SI--------FVKPVIGLVTKIDLAEADVD---IERAKELLET------------ 116 (142)
T ss_pred CCEEEEEecCCCC-CcCCC-hhHH-Hh--------ccCCeEEEEEeeccCCcccC---HHHHHHHHHH------------
Confidence 9999999999997 44432 2222 21 12499999999999642211 1111111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
....+++++||++|+ +++++++|.
T Consensus 117 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 117 -------------------AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -------------------cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 111268999999999 999999885
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=150.54 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=78.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
..+.+|||||++++.......+..+|++++|+|++++ .........+..+... ...|+++|+||+|+.......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~-~~~~~t~~~l~~~~~~-----~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP-CPQPQTSEHLAALEIM-----GLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC-CCCcchHHHHHHHHHc-----CCCcEEEEEEchhccCHHHHH
Confidence 5789999999999888888888899999999999974 1111222233222221 235799999999997532222
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+.+.+.++.. ....++++++||++|+ +++|+++|.+.+|+
T Consensus 157 ~~~~~i~~~~~~~-----------------------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGT-----------------------------IAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhcc-----------------------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222222211110 0124579999999999 99999999998764
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=138.88 Aligned_cols=163 Identities=24% Similarity=0.424 Sum_probs=127.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.++.+++++|..|+||||++.++.-++... +.+++..+....++ ++.++++||..|+...++.|+.|+...
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~v~y--------KNLk~~vwdLggqtSirPyWRcYy~dt 86 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVETVPY--------KNLKFQVWDLGGQTSIRPYWRCYYADT 86 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcccccc--------ccccceeeEccCcccccHHHHHHhccc
Confidence 378899999999999999999988776432 34444444333333 227899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|||+|+++. ..+......+..++.+... ....+++++||+|...+....++...+. ++.++
T Consensus 87 ~avIyVVDssd~-dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~t~~E~~~~L~--l~~Lk----------- 150 (182)
T KOG0072|consen 87 DAVIYVVDSSDR-DRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGALTRSEVLKMLG--LQKLK----------- 150 (182)
T ss_pred ceEEEEEeccch-hhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhhhHHHHHHHhC--hHHHh-----------
Confidence 999999999998 6677778888888887654 5688999999999988777766655543 22210
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...++++++||.+|+ +++..+||.+-++
T Consensus 151 ------------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 151 ------------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ------------------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 345799999999999 9999999987654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=168.30 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccc------------cCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST------------KKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~DtpG~~~~ 130 (268)
+.+.|+++|++|+|||||+++|.+..+......+++.+.+....+.... +......+.+||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 5678999999999999999999988764332222333223222221110 0011124899999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------HH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KE 196 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~ 196 (268)
...+..+++.+|++++|+|++++.. ......+. ++.. .++|+++++||+|+..... .+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~--~qt~e~i~-~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFK--PQTQEALN-ILRM-----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCC--HhHHHHHH-HHHH-----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999998521 11122222 2222 5789999999999974211 11
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+.+.+.+.+..+... ....+...+.. .........++++++||++|+ +++|.+||..
T Consensus 155 ~v~~~~~~~~~~lv~~---l~~~G~~~e~~-------~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIK---LHEEGFEAERF-------DRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCccHHhh-------hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 1111111111111000 00000000000 001123456899999999999 9999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=171.47 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=112.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||+++|....+.......++...+.+... ....+....+++||||||+.|...+..+++.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~--~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVE--FEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEE--EEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 4678999999999999999999998776443333333333323222 22223347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+.++. . ....+.+..+.. .++|+++|+||+|+... ..+.+.+.+... +.+
T Consensus 320 DiaILVVDA~dGv-~-~QT~E~I~~~k~------~~iPiIVViNKiDl~~~-~~e~v~~eL~~~-~ll------------ 377 (742)
T CHL00189 320 DIAILIIAADDGV-K-PQTIEAINYIQA------ANVPIIVAINKIDKANA-NTERIKQQLAKY-NLI------------ 377 (742)
T ss_pred CEEEEEEECcCCC-C-hhhHHHHHHHHh------cCceEEEEEECCCcccc-CHHHHHHHHHHh-ccc------------
Confidence 9999999998862 1 222233332221 67899999999999753 223333322210 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
-......++++++||++|+ +++|+++|...
T Consensus 378 --------------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 378 --------------PEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred --------------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 0001234689999999998 99999998764
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=146.69 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccc-------ccee-----eccccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG-------TVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
..+|+++|+.++|||||+++|+......+ .... ...+.+...........+ ..+.++||||+.++.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCHHHHH
Confidence 46899999999999999999975411000 0000 011111111111122233 578999999999888
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
......+..+|++++|+|+..+. .......+..+.. .++| +++|+||+|+... ++..+.+.+++...-
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~------~~~~~iIvviNK~D~~~~---~~~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ------VGVPYIVVFLNKADMVDD---EELLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCcEEEEEeCCCCCCc---HHHHHHHHHHHHHHH
Confidence 88888899999999999998862 1223333333332 4666 7899999999632 222233333333321
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c----------hhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I----------SQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i----------~~l~~~l~~~~~p 268 (268)
.... | -..+++++++||++|. + ..|++.|....+|
T Consensus 149 ~~~g---------------------~--~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 149 SKYG---------------------F--DGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHhc---------------------c--cccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence 1000 1 0235799999999987 4 3677777766654
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=142.66 Aligned_cols=157 Identities=25% Similarity=0.322 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LD 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~ 135 (268)
..+|+++|++|+|||||++++.+..... .+..+.............. ...+.+|||||....... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI---VSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe---ccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 5689999999999999999999875421 1111111111111111112 257899999998754432 33
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.++..+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+.+.+.+.. +..
T Consensus 78 ~~~~~~d~i~~v~d~~~~---~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~-~~~------- 139 (168)
T cd04163 78 SALKDVDLVLFVVDASEP---IGEGDEFILELLKK-----SKTPVILVLNKIDLVKD--KEDLLPLLEK-LKE------- 139 (168)
T ss_pred HHHHhCCEEEEEEECCCc---cCchHHHHHHHHHH-----hCCCEEEEEEchhcccc--HHHHHHHHHH-HHh-------
Confidence 457889999999999986 22233334333332 46899999999999732 2222222211 111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++++|+++++ +++++++|.+++
T Consensus 140 -----------------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 140 -----------------------LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred -----------------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0123478999999999 999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=145.55 Aligned_cols=155 Identities=24% Similarity=0.249 Sum_probs=100.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCc----hh---hHhhhc
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRL----RP---KLDEFL 138 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~----~~---~~~~~~ 138 (268)
++|++|||||||+|+|.+.... ....++..+..+.. ... + ..+.+|||||+.+. .. ....++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~------~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVV------EVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEE------EcCCC--CeEEEEeccccchhhhcCCCccHHHHHHH
Confidence 5899999999999999988641 11122333332222 223 3 57899999997431 11 234567
Q ss_pred cCCCEEEEEEeCCCCC-----CCHHHHHHHHHHHHhcCCc----cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 139 PQAAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTV----VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
+.+|++++|+|+.+.. .++.....+...+...... ...+.|+++|+||+|+.......... .....
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~-- 147 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELA-- 147 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHh--
Confidence 8899999999999862 3466666666666543210 01478999999999997543322211 00000
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....+++++||++|. ++++.+++.+.
T Consensus 148 -----------------------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 -----------------------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred -----------------------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0223469999999998 99999998765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=171.63 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=111.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+.|+++|+.|+|||||+++|....+.......++...+.+.+ .+.+ ..++|||||||.+|...+..+++.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v----~~~~--~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV----ETNG--GKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE----EECC--EEEEEEECCCCccchhHHHhhhhhC
Confidence 578899999999999999999999877644333333333333322 2234 5799999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||++++ . .......+..... .++|++|++||+|+... ..+.+...+.. .+.+
T Consensus 362 DiaILVVdAddG-v-~~qT~e~i~~a~~------~~vPiIVviNKiDl~~a-~~e~V~~eL~~-~~~~------------ 419 (787)
T PRK05306 362 DIVVLVVAADDG-V-MPQTIEAINHAKA------AGVPIIVAINKIDKPGA-NPDRVKQELSE-YGLV------------ 419 (787)
T ss_pred CEEEEEEECCCC-C-CHhHHHHHHHHHh------cCCcEEEEEECcccccc-CHHHHHHHHHH-hccc------------
Confidence 999999999986 2 2233333332222 67999999999999653 23333333221 0000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..+...++++++||++|+ +++|+++|..
T Consensus 420 --------------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 --------------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred --------------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 0011234689999999999 9999999864
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-20 Score=172.61 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=106.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRP 132 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~ 132 (268)
.....+|+++|.+|||||||+|+|++... ...+..+++++........+++ ..+.+|||||.+. +..
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~---~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~ 346 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRRE---AVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIAS 346 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCc---eeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHH
Confidence 34567899999999999999999998754 2223334444444444444455 5789999999764 234
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
....+++.+|++|+|+|++++ +......+...+.. .++|+++|+||+|+.... ... .. ...
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~---~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~--~~~----~~-~~~---- 407 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVG---LTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASE--YDA----AE-FWK---- 407 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECcccccch--hhH----HH-HHH----
Confidence 455678999999999999875 23333334444432 689999999999985421 100 00 000
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+... ..+++||++|. +++|+++|.+.++
T Consensus 408 --------------------------lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 408 --------------------------LGLG-EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred --------------------------cCCC-CeEEEECCCCCCchHHHHHHHHhcc
Confidence 0111 24689999999 9999999998765
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=144.09 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=116.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--ccc---cc-------------eeeccccceEEeecc--cccCCceeeEEEEeC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQG---TV-------------TSMEPNEDTFVLHSE--STKKGKIKPVHLVDV 124 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~---~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~~i~Dt 124 (268)
++|+++|+.++|||||+.+|+...- ... .. .++........+... ...+++.+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999975421 000 00 000000001111100 011244578999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQ 201 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~~~ 201 (268)
||+.+|......+++.+|++++|+|+.++ .. ......+..... .++|+++|+||+|+.. ..++++..+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~~-~~t~~~l~~~~~------~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEG-VC-VQTETVLRQALK------ERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCC-CC-HHHHHHHHHHHH------cCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 99999999999999999999999999987 32 233334443333 5689999999999862 2356666777
Q ss_pred HHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---------CchhHHHHHHhhcCC
Q 024385 202 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVKP 268 (268)
Q Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~p 268 (268)
+.+.+++++........++..+. ......|+...++ ++.+||+.| .+-.+++.|.+++||
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~-----~~~~~~~~p~~gn--v~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEK-----DDEKWYFSPQKGN--VAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHhHHHHhccccccccc-----CcCCcEEeeCCCc--EEEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence 76666666554443322211100 0111234444443 555788876 266778888888876
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=144.48 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=98.7
Q ss_pred cccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC
Q 024385 99 PNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178 (268)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (268)
|+.+.......+.+++..+.+.||||||++++...+..|++.+|++|+|||+++. .+++.+..|+..+..... .+.
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~-~sf~~~~~w~~~i~~~~~---~~~ 86 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR-QSFENTTKWIQDILNERG---KDV 86 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCC
Confidence 3343333334455667778999999999999999999999999999999999997 789999999998876532 578
Q ss_pred cEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c
Q 024385 179 PVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 255 (268)
Q Consensus 179 piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i 255 (268)
|+++|+||+|+.... ..++..+. .+ ..+..|++|||++|. +
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~----~~--------------------------------~~~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK----AQ--------------------------------EYNTMFHETSAKAGHNI 130 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH----HH--------------------------------HcCCEEEEEECCCCCCH
Confidence 999999999996432 22221111 01 123478999999999 9
Q ss_pred hhHHHHHHhhcC
Q 024385 256 SQVEQFIREQVK 267 (268)
Q Consensus 256 ~~l~~~l~~~~~ 267 (268)
+++++||.+.++
T Consensus 131 ~~lf~~l~~~l~ 142 (176)
T PTZ00099 131 KVLFKKIAAKLP 142 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=138.01 Aligned_cols=155 Identities=25% Similarity=0.308 Sum_probs=105.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCc-ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 69 LAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
++|++|+|||||++++.+... .....++. .... .......+....+.+||+||+..+......+++.+|++++|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~----~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 75 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFY----SKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILV 75 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hhee----eEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEE
Confidence 589999999999999998765 22222222 2211 11222223346899999999998888888899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccC
Q 024385 148 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 227 (268)
Q Consensus 148 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+|++++ .+......++....... ...+.|+++++||+|+.......... ......
T Consensus 76 ~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~-------------------- 130 (157)
T cd00882 76 YDVTDR-ESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEE--LAEQLA-------------------- 130 (157)
T ss_pred EECcCH-HHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHH--HHHHHH--------------------
Confidence 999997 55666666522222211 12789999999999997654433221 000000
Q ss_pred CCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 228 GIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 228 ~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.....+++++||.+|. ++++++||.+
T Consensus 131 -----------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 -----------KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred -----------hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 1335689999999998 9999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=162.85 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
...+|+++|.+|+|||||+|++++... ...+..++++..........++ ..+.+|||||+.+....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~---~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER---VIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc---eeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHH
Confidence 468999999999999999999998653 2222333344443333333444 46899999997543211
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.......++.+.+...+.
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~-~~~~~-~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~---- 314 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLP---- 314 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcc----
Confidence 23467899999999999987 33322 233333322 57899999999999743222222222221111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. ...++++++||++|. ++++++++.+
T Consensus 315 --------------------------~-~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 315 --------------------------F-LDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred --------------------------c-ccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 0 123589999999998 9988887765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=164.00 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhhHhhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPKLDEF 137 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~~~~~ 137 (268)
+|+++|.+|||||||+|+|++... ......++.++........+++ ..+.+|||||+.. +......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---AIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---ceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 589999999999999999998763 2222233344333334444555 4799999999743 33445667
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+.++ +......+...++. .++|+++|+||+|+...... . .. +..
T Consensus 76 ~~~ad~vl~vvD~~~~---~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~--~-~~----~~~--------- 131 (429)
T TIGR03594 76 IEEADVILFVVDGREG---LTPEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAV--A-AE----FYS--------- 131 (429)
T ss_pred HhhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----hCCCEEEEEECccCCccccc--H-HH----HHh---------
Confidence 8999999999999986 22333334444432 57899999999998753321 0 00 110
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+..+++++||++|. ++++++++.+.++
T Consensus 132 ----------------------lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 132 ----------------------LGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ----------------------cCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 111258999999999 9999999988764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=165.63 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=108.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccc----ccc-e----------eeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ----GTV-T----------SMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~----~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.++++++|+.++|||||+.+|+... +.. ... . ++......+.+. ..+++.+.+++|||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~---~~dg~~~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYK---AKDGETYILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEE---ccCCCcEEEEEEEC
Confidence 356799999999999999999997532 111 000 0 011111111111 11455588999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|...+..+++.+|++|+|+|++++ ........|. .... .+.|+++|+||+|+.... .+...+.+.+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~-~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~ 152 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVY-LALE------NDLEIIPVLNKIDLPAAD-PERVKQEIED 152 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHH-HHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHH
Confidence 99999999999999999999999999987 3333333332 2222 578999999999986532 2222222221
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. .....++++||++|. +++|+++|.+.+||
T Consensus 153 ~lg--------------------------------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 153 VIG--------------------------------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HhC--------------------------------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 100 001248999999999 99999999998874
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=165.49 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=104.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC---cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+++|++|+|||||+++|++.. ++.+.. ++.+.......+...+ ..+.+||+|||++|......++.++|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~----rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD 75 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKK----RGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGID 75 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhc----CCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCC
Confidence 68999999999999999999643 221111 1111111111123334 68999999999999988889999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|++++. ..+..+.+.. +.. .++| +++|+||+|+.+....+...+.+...+... .
T Consensus 76 ~aILVVDa~~G~--~~qT~ehl~i-l~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~----~------- 136 (581)
T TIGR00475 76 AALLVVDADEGV--MTQTGEHLAV-LDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY----I------- 136 (581)
T ss_pred EEEEEEECCCCC--cHHHHHHHHH-HHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh----C-------
Confidence 999999999852 2333333332 222 4677 999999999975432222333333222210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ..+++++++||++|+ ++++.++|.+.+
T Consensus 137 --------------~---~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 137 --------------F---LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred --------------C---CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 0 124689999999998 999998887653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=146.80 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=94.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+...+.++.... .........+..+.+.+|||+|+++++..+..|+.++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~ 80 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNL----DPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANG 80 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeee----eEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCE
Confidence 3799999999999999999999998865444433221 111112222224689999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+++|+|......+.+....|+..+..... .+.|+++|+||+|+......
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchhH
Confidence 99999999963555566666666665431 47999999999999876543
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-20 Score=162.24 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=99.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhhHhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPKLDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~~~~ 136 (268)
++|+++|.+|||||||+|+|.+.... .....+.++.........+++ ..+.+|||||+.. +......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 58999999999999999999987641 112223333333333344555 6899999999987 2333556
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++|+|+|+.++. .....++..++.. .+.|+++|+||+|+... .... .+ ...
T Consensus 77 ~~~~ad~il~vvd~~~~~---~~~~~~~~~~l~~-----~~~piilv~NK~D~~~~--~~~~----~~-~~~-------- 133 (435)
T PRK00093 77 AIEEADVILFVVDGRAGL---TPADEEIAKILRK-----SNKPVILVVNKVDGPDE--EADA----YE-FYS-------- 133 (435)
T ss_pred HHHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCcEEEEEECccCccc--hhhH----HH-HHh--------
Confidence 788999999999998862 2223333344432 47899999999997531 1111 10 000
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+.-.++++||++|. ++++++++.+
T Consensus 134 -----------------------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 134 -----------------------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -----------------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 000137899999998 9999999876
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=160.28 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~ 133 (268)
....|+++|.||||||||+|+|++.+... ...+|..|..+ .+...+ ..+.+|||||..... ..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG------vv~~~~--~~f~laDtPGliegas~g~gLg~~ 229 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG------VVQAGD--TRFTVADVPGLIPGASEGKGLGLD 229 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE------EEEECC--eEEEEEECCCCccccchhhHHHHH
Confidence 45689999999999999999999865421 11223333322 223333 579999999974321 22
Q ss_pred HhhhccCCCEEEEEEeCCCCC---CCHHHHHHHHHHHHhcCCc--------cCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNSTV--------VKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~~--------~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
...++..||++|+|+|+++.. +.+.....+..++...... ...+.|++||+||+|+.... +..+.+
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~---el~e~l 306 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR---ELAEFV 306 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH---HHHHHH
Confidence 344678899999999998531 2344443333333222100 01578999999999996432 122222
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+. ...++++++||++|+ +++|.++|.+.+
T Consensus 307 ~~~l~--------------------------------~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 307 RPELE--------------------------------ARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred HHHHH--------------------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 22121 113479999999998 999999998765
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=139.34 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=91.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----HhhhccCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK----LDEFLPQA 141 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~ 141 (268)
+|+++|++|+|||||+|++.+... . ...+....+. +. .+|||||....... ....++.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~---~~~~~~v~~~------~~----~~iDtpG~~~~~~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----L---ARKTQAVEFN------DK----GDIDTPGEYFSHPRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----c---CccceEEEEC------CC----CcccCCccccCCHHHHHHHHHHHhcC
Confidence 799999999999999999876431 1 1111112121 11 26999997432222 23447899
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++ ...|+..+. .+.|+++++||+|+... ..+.+. +.++..
T Consensus 66 d~il~v~d~~~~-~s~--~~~~~~~~~-------~~~~ii~v~nK~Dl~~~-~~~~~~----~~~~~~------------ 118 (158)
T PRK15467 66 DMLIYVHGANDP-ESR--LPAGLLDIG-------VSKRQIAVISKTDMPDA-DVAATR----KLLLET------------ 118 (158)
T ss_pred CEEEEEEeCCCc-ccc--cCHHHHhcc-------CCCCeEEEEEccccCcc-cHHHHH----HHHHHc------------
Confidence 999999999987 333 233443321 46799999999998542 222222 211110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++|+ +++|++++.+.++
T Consensus 119 ------------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 119 ------------------GFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ------------------CCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 112489999999999 9999999988653
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=153.52 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=121.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
...+|+++|.||+|||||+|++++++. .+.+..+++++..+...+.+++ ..+.++||+|..+=...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR---~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER---VIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce---EEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEee
Confidence 458999999999999999999999876 6677778888888888888888 47899999996531111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~~ 209 (268)
....+..+|++++|+|++++ +.+....+..+..+ .+.+++||+||+|+... ...++.++.+.+.+..
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~---~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~- 322 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEG---ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF- 322 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCC---chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc-
Confidence 23456789999999999998 66666666666654 78999999999999876 3344444455443332
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-.-.+++.+||++|. ++++++++.+
T Consensus 323 ------------------------------l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 323 ------------------------------LDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred ------------------------------ccCCeEEEEEecCCCChHHHHHHHHH
Confidence 223478899999998 9998888765
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=162.87 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=105.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccc--cCCce-----e-----eEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KKGKI-----K-----PVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~-----~~~i~DtpG~~~ 129 (268)
.+.+.|+++|++|+|||||+++|.+..+.......+..+.+.+..+.... ..+.. . .+.+||||||++
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46778999999999999999999876543222222222222222111100 00100 0 268999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------H
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 195 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~ 195 (268)
|...+..+++.+|++++|+|++++.. ......+. +... .++|+++++||+|+...-. .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~--~qt~e~i~-~~~~-----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQ--PQTIEAIN-ILKR-----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCC--HhHHHHHH-HHHH-----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998889999999999999998511 12222222 2221 5789999999999863111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
..+.+.++..+..+... ........... ....+....++++++||++|+ +++|.+.+.
T Consensus 156 ~~v~~~f~~~l~ev~~~---L~~~g~~~e~~-------~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 156 QRVQQELEEKLYELIGQ---LSELGFSADRF-------DRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCChhhh-------hhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 11222222222221111 00000000000 001223456899999999999 988877764
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=145.45 Aligned_cols=185 Identities=20% Similarity=0.223 Sum_probs=105.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeec----------cccce------EEee------------------cccc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME----------PNEDT------FVLH------------------SEST 111 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~----------~~~~~------~~~~------------------~~~~ 111 (268)
+|+++|+.++|||||++++..+.+..+...... .+.+. ..+. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997766332111000 00000 0000 0011
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+ ..++++||||+++|.......+. .+|++++|+|+..+. .......+..+.. .++|+++|+||+|+
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~------~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA------LNIPVFVVVTKIDL 150 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEECccc
Confidence 112 57899999999998776666664 689999999998862 2223333333332 67899999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..........+.+.+.+.............+.++.... ...+. ....++++.+||++|+ +++|.++|...-
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~---~~~~~---~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLA---ASNFS---SERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeeh---hhcCC---ccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 75433334444444333321111111100000110000 00011 1345689999999999 999998776543
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=163.65 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc--CCccccccee--------ecc--ccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTVTS--------MEP--NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
++|+++|+.++|||||+++|+. +.+....... .+. ..+.......+.+.+ +.+++||||||.+|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGG 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHH
Confidence 5899999999999999999986 3332111000 011 111111112233344 7899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+..+++.+|++++|+|+.++ .......++..+.. .++|+++|+||+|+.... .+++.+.+...+..+..
T Consensus 80 ev~~~l~~aD~alLVVDa~~G--~~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~- 149 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGA- 149 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC--CcHHHHHHHHHHHH------CCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhcc-
Confidence 999999999999999999986 24556666666654 578999999999986543 33333333333322100
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcCC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVKP 268 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~p 268 (268)
..-...++++++||++| .++.|++.|.+++|+
T Consensus 150 ------------------------~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 150 ------------------------DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ------------------------ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 00012357999999998 388999999998874
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=155.66 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=103.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~ 137 (268)
..|+++|.||||||||+|+|++.+. .+ +-.|.+++.+....+...+. ..+.++||||..+- ......+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~---~v-s~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~ 234 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP---KV-ADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKH 234 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc---cc-cCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHH
Confidence 3799999999999999999998653 11 11222322222222222221 35899999997642 1223456
Q ss_pred ccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 138 LPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+..+|++++|+|++.. .+.++....++..+..... .-.+.|+++|+||+|+.... ++.+.+.+..+..
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~------ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEE---EAEERAKAIVEAL------ 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChH---HHHHHHHHHHHHh------
Confidence 8899999999999821 1345666666665554321 01468999999999996432 2222222111100
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++++ +++|+++|.+.++
T Consensus 305 ------------------------~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 305 ------------------------GWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------------------CCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 111258999999998 9999999988764
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=156.40 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCc--hhhHh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL--RPKLD---- 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~--~~~~~---- 135 (268)
.++|+++|.+|||||||+|+|++.++... ..+|..+.... +.+.+. ..+.+|||||..+. ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~ 269 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------IDVADV-GETVLADTVGFIRHLPHDLVAAFKA 269 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE------EEeCCC-CeEEEEecCcccccCCHHHHHHHHH
Confidence 36899999999999999999998765211 12233333222 222332 26789999998432 22222
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..++.+|++++|+|++++ .+......+ ..++.... ..+.|+++|+||+|+...... .... ..
T Consensus 270 tl~~~~~ADlIL~VvDaS~~-~~~e~l~~v-~~iL~el~--~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~----- 333 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADV-RVQENIEAV-NTVLEEID--AHEIPTLLVMNKIDMLDDFEP-----RIDR--DE----- 333 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCc-cHHHHHHHH-HHHHHHhc--cCCCCEEEEEEcccCCCchhH-----HHHH--Hh-----
Confidence 346889999999999997 544444322 22222211 157899999999999643110 0100 00
Q ss_pred hccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+. .++++||++|+ +++|+++|.+.+.
T Consensus 334 ---------------------------~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 ---------------------------ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---------------------------cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 001 25789999998 9999999988763
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=160.54 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc--CCcccccc-----e---eeccccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----T---SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
..++|+++|+.++|||||+++|+. +.+..... . ..+.+.+.........+..+.+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 567999999999999999999986 33322110 0 0111111111111122222337999999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+..+++.+|++|+|+|+.++. .......+..... .++|+++|+||+|+...... +..+.+...+..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l--- 151 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD-WVVDQVFDLFVNL--- 151 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh-HHHHHHHHHHhcc---
Confidence 9999999999999999999862 2334444444443 57899999999998765433 2222222222111
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcCC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 268 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 268 (268)
.. ......++++.+||++|. +..|++.|.+++||
T Consensus 152 ----~~------------------~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 152 ----DA------------------TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----Cc------------------cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 00 000123689999999985 67888899988875
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=143.22 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=73.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--c--------------------ce-----eeccccceEEeecccccCCceee
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--T--------------------VT-----SMEPNEDTFVLHSESTKKGKIKP 118 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 118 (268)
+|+++|++|+|||||+++|+...-... . .. ....+.+.........+.+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999975321100 0 00 0001111111112223333 57
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+|||||+.++.......++.+|++|+|+|++++. ...... ...+.... ...++++|+||+|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~~-~~~~~~~~----~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTRR-HSYILSLL----GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHHH-HHHHHHHc----CCCcEEEEEEchhccc
Confidence 899999999988777778889999999999999862 122222 22222221 2245788999999964
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=158.82 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=78.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-------------c-------ce-----eeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-------------T-------VT-----SMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-------------~-------~~-----~~~~~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|++|+|||||+++|+...- ... . .. ...++.+.......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4668899999999999999999984321 100 0 00 0012222222222233333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.+||||||++|.......++.+|++++|+|+++. ........+...+.... ...|+++|+||+|+..
T Consensus 84 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 --YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA-GGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred --eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC-CCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 6899999999999877777778899999999999972 11222222222222221 2346999999999975
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-19 Score=153.19 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~ 135 (268)
..|+++|.||||||||++++++.+... ...+|..|+.+...+. ++ ..+.+||+||...- ...+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-----~~--~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-----DG--RSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-----CC--ceEEEEECCCCcccccccchHHHHHH
Confidence 489999999999999999999866321 1233444443332221 12 47999999997531 12233
Q ss_pred hhccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.++++|+|+|+++. .++++....+...+..... ...++|++||+||+|+... .+.+ +.+. +.+
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~--~e~l-~~l~---~~l---- 300 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEA--EENL-EEFK---EKL---- 300 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCC--HHHH-HHHH---HHh----
Confidence 456679999999999753 1345555555555544321 1147899999999998422 1111 1111 110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. .+++++||++|+ +++|+++|.+.+
T Consensus 301 --------------------------~--~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 301 --------------------------G--PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred --------------------------C--CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 368999999999 999999998765
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=138.50 Aligned_cols=180 Identities=22% Similarity=0.290 Sum_probs=110.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccccc----------ceee---ccccceEEee-cc--cc---cCCceeeEEEEeCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT----------VTSM---EPNEDTFVLH-SE--ST---KKGKIKPVHLVDVP 125 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~----------~~~~---~~~~~~~~~~-~~--~~---~~~~~~~~~i~Dtp 125 (268)
++|+++|+.|+|||||+++|+........ .... +...+ ..+. .. .. .++..+.+.+||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g-iti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERG-ISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcC-ccccccceeEEEEcCCCCEEEEEEEECC
Confidence 47999999999999999999875432210 0000 00000 0000 00 00 13445789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQM 202 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~l 202 (268)
|+.++......++..+|++++|+|+.+. .+. ....++..... .+.|+++|+||+|+... ....+..+.+
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~-~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVEG-VTS-NTERLIRHAIL------EGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 9999988899999999999999999886 333 22333333332 46899999999998632 1233444455
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch--------hHHHHHHhhcC
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------QVEQFIREQVK 267 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~--------~l~~~l~~~~~ 267 (268)
.+.++.++.......... ...|... +..++++||+.|. +. +|.+.|.+++|
T Consensus 152 ~~~i~~~n~~~~~~~~~~------------~~~~~p~--~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 152 RHIIDEVNNIIASFSTTL------------SFLFSPE--NGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHhcCCC------------ceEeccC--CCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 544444433332222111 0112222 2357788999885 55 78888877765
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-19 Score=143.12 Aligned_cols=119 Identities=23% Similarity=0.153 Sum_probs=74.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCc--cccc--------------------ce-----eeccccceEEeecccccCCceee
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------VT-----SMEPNEDTFVLHSESTKKGKIKP 118 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~--~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 118 (268)
+|+++|+.++|||||+.+|+...- .... .. ....+++.......+.+.+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999863211 0000 00 0011111122222233344 68
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC-----CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP-----NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+|||||+.++.......++.+|++|+|+|++++.. ........+... ... ...|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL----GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc----CCCeEEEEEEcccccc
Confidence 9999999998888777788889999999999998410 011122222222 211 3468999999999974
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=157.64 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=103.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccc--------------------ee-----eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTV--------------------TS-----MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|+.++|||||+++|+.. ....... .. ...+.+.......+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 46789999999999999999999852 2211000 00 011111111122233333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+.+.+||||||++|......++..+|++++|+|++++ .+.. ....++ .+.... ...|+++|+||+|+...
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~t~~~~-~~~~~~----~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDG-EFEVQPQTREHA-FLARTL----GINQLIVAINKMDSVNY 156 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCC-CcccCCchHHHH-HHHHHc----CCCeEEEEEEChhccCc
Confidence 6899999999999887777788999999999999986 3221 111111 222211 23579999999999742
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh------------HH
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ------------VE 259 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~------------l~ 259 (268)
. .+. .+...++++.+..... + -...++++++||++|+ +++ |.
T Consensus 157 ~-~~~-~~~~~~ei~~~~~~~g---------------------~--~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~ 211 (426)
T TIGR00483 157 D-EEE-FEAIKKEVSNLIKKVG---------------------Y--NPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLL 211 (426)
T ss_pred c-HHH-HHHHHHHHHHHHHHcC---------------------C--CcccceEEEeeccccccccccccCCccccchHHH
Confidence 2 111 1222223332211100 0 0234689999999998 764 77
Q ss_pred HHHHhhcC
Q 024385 260 QFIREQVK 267 (268)
Q Consensus 260 ~~l~~~~~ 267 (268)
+.|....+
T Consensus 212 ~~l~~~~~ 219 (426)
T TIGR00483 212 EALDALEP 219 (426)
T ss_pred HHHhcCCC
Confidence 77765443
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=166.15 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~~ 133 (268)
..++|+++|.+|||||||+|+|++.+.. ..+..++++...+...+.+++ ..+.+|||||+.+- ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~---~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~ 523 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA---VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSS 523 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc---ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHH
Confidence 3579999999999999999999988641 122223333333333344455 36789999996421 111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+......+ .+++.++..
T Consensus 524 ~r~~~~i~~advvilViDat~~-~s~~~~-~i~~~~~~------~~~piIiV~NK~DL~~~~~~~----~~~~~~~~~-- 589 (712)
T PRK09518 524 LRTQAAIERSELALFLFDASQP-ISEQDL-KVMSMAVD------AGRALVLVFNKWDLMDEFRRQ----RLERLWKTE-- 589 (712)
T ss_pred HHHHHHhhcCCEEEEEEECCCC-CCHHHH-HHHHHHHH------cCCCEEEEEEchhcCChhHHH----HHHHHHHHh--
Confidence 12457889999999999987 444443 33333332 578999999999997533222 222222211
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ....+++++||++|. ++++++.+.+..
T Consensus 590 ------------------------l~~-~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 590 ------------------------FDR-VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred ------------------------ccC-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 122467889999998 999998887653
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=143.53 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=112.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccc--------c-cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQ--------G-TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~--------~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++|+...-.. . +.....+ ..+.......+.+.+ +++++|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 58999999999999999997532100 0 0000000 000001111122333 689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
..+..+++.+|++++|+|++++. . .....++..+.. .++|+++++||+|+.... .+...+.+...+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~-~-~~~~~~~~~~~~------~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~--- 146 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGV-Q-AQTRILWRLLRK------LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS--- 146 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCC-C-HHHHHHHHHHHH------cCCCEEEEEECccccCCC-HHHHHHHHHHHHCC---
Confidence 99999999999999999999872 2 233333333322 578999999999998643 34444444433321
Q ss_pred hhhccc----------cc-----------cccCc-ccCCCCCCCeeeccC----------CceeEEEEeeeccCC-chhH
Q 024385 212 SRSAVS----------EA-----------DVTND-FTLGIPGQAFSFSQC----------HNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 212 ~~~~~~----------~~-----------~~~~~-~~~~~~~~~f~f~~~----------~~~~~~~~~Sa~~g~-i~~l 258 (268)
..-.+. .. +.++. +.....+.+++-+++ ..-+|++.+||.++. ++.|
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l 226 (237)
T cd04168 147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL 226 (237)
T ss_pred CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence 110000 00 00000 000111122221111 235788889999998 9999
Q ss_pred HHHHHhhcCC
Q 024385 259 EQFIREQVKP 268 (268)
Q Consensus 259 ~~~l~~~~~p 268 (268)
++.|.+++|.
T Consensus 227 l~~~~~~~p~ 236 (237)
T cd04168 227 LEGITKLFPT 236 (237)
T ss_pred HHHHHHhcCC
Confidence 9999999873
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=155.30 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=104.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc---cc--ceeeccccceEE------------eecccccCC------ceee
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GT--VTSMEPNEDTFV------------LHSESTKKG------KIKP 118 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~--~~~~~~~~~~~~------------~~~~~~~~~------~~~~ 118 (268)
....+|+++|++++|||||+++|.+..... .. -.|+......+. +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356789999999999999999997532110 00 001111100000 001000011 1257
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
+++||||||++|...+......+|++++|+|++++. ...+..+.+..+... ...|+++|+||+|+.......+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~~qt~e~l~~l~~~-----gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTKEHLMALEII-----GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-cccchHHHHHHHHHc-----CCCeEEEEEEccccCCHHHHHHH
Confidence 999999999999888888889999999999999752 112233333322221 23579999999999753222111
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 156 ~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-----------------------------VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-----------------------------ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 12222111100 0224689999999999 9999999998765
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=132.98 Aligned_cols=155 Identities=25% Similarity=0.236 Sum_probs=99.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-------hHhhhccCC
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-------KLDEFLPQA 141 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------~~~~~~~~~ 141 (268)
++|++|+|||||++++.+..... .+..+..+...........+ ...+.+|||||+..... ....+++.+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---VSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---cCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhC
Confidence 58999999999999999875431 11111111111111111111 25899999999876543 344578899
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+.+. ....... +...... .+.|+++|+||+|+..........+....
T Consensus 77 d~il~v~~~~~~-~~~~~~~-~~~~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~----------------- 131 (163)
T cd00880 77 DLILFVVDADLR-ADEEEEK-LLELLRE------RGKPVLLVLNKIDLLPEEEEEELLELRLL----------------- 131 (163)
T ss_pred CEEEEEEeCCCC-CCHHHHH-HHHHHHh------cCCeEEEEEEccccCChhhHHHHHHHHHh-----------------
Confidence 999999999997 4333332 2333322 68999999999999865433322210000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
........+++++||+++. +++++++|.+.+
T Consensus 132 --------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 132 --------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred --------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 0011345689999999998 999999998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=159.68 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=102.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|+++|+.++|||||+++|++..... .......+.+........ ..++ ..+.+||||||++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr-~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADR-LPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-chhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 58899999999999999998643110 000111111111100011 1123 3689999999999988888889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+.++. .....+.+ .++.. .++| ++||+||+|+.+....+.+.+.+.+.+... .
T Consensus 79 lLVVda~eg~--~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~----~--------- 137 (614)
T PRK10512 79 LLVVACDDGV--MAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY----G--------- 137 (614)
T ss_pred EEEEECCCCC--cHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc----C---------
Confidence 9999999862 23333333 33332 3455 579999999975333333333333222210 0
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...++++++||++|+ +++|+++|.+...|
T Consensus 138 ----------------~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 138 ----------------FAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ----------------CCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 123579999999999 99999999887654
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=162.73 Aligned_cols=153 Identities=23% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
+..+|+++|++|||||||+|++++.+...+.. ++++..........++ ..+.+|||||+.++...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~----pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW----AGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCC----CCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHH
Confidence 35689999999999999999999876522221 2222222222223333 68999999999876431
Q ss_pred -Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 134 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 134 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...++ ..+|++++|+|+++. + +...+..++.+ .++|+++|+||+|+.+........+.+.+
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~l-e---r~l~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~------ 139 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNL-E---RNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSA------ 139 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcc-h---hhHHHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHH------
Confidence 22343 479999999999986 2 22334444443 57999999999998754443322223322
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++.+.+.+..
T Consensus 140 -----------------------------~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 -----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -----------------------------HhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 123579999999998 999999987753
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=128.88 Aligned_cols=160 Identities=26% Similarity=0.314 Sum_probs=113.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCchhhH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 134 (268)
....||++.|+.++||||++.++........ ..++.+. ++....+.. ...++. ..+.++|||||+++.-.|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~~-~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDED-TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcCc-ceEEEecCCCcHHHHHHH
Confidence 4678999999999999999999987653111 0001111 111111111 222222 578999999999999999
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.-+.+++.++|+++|++.+ ..+ ....+.+++... ..+|++|++||.|+.+..+++.+++.+...+
T Consensus 86 ~~l~~ga~gaivlVDss~~-~~~--~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-------- 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRP-ITF--HAEEIIDFLTSR----NPIPVVVAINKQDLFDALPPEKIREALKLEL-------- 150 (187)
T ss_pred HHHhCCcceEEEEEecCCC-cch--HHHHHHHHHhhc----cCCCEEEEeeccccCCCCCHHHHHHHHHhcc--------
Confidence 9999999999999999998 444 444455555542 3399999999999999999999988887522
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
..+++++.+|.+++ ..+..+.+..
T Consensus 151 --------------------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 151 --------------------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred --------------------------CCCceeeeecccchhHHHHHHHHHh
Confidence 24689999999887 4444444443
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=131.41 Aligned_cols=116 Identities=27% Similarity=0.368 Sum_probs=79.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+|+|++|||||||+++|.++.+........ ......... .....+....+.+||++|++.+...+...+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEE-TSEITIGVD-VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------S-STTSCEEEE-EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccc-cCCCcEEEE-EEEecCCceEEEEEecCccceecccccchhhcCcEEE
Confidence 69999999999999999999988641111111 111112111 1223344346899999999988887777799999999
Q ss_pred EEEeCCCCCCCHHHHHHH---HHHHHhcCCccCCCCcEEEEeecCC
Q 024385 146 FVVDALEFLPNCSAASEY---LYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+|||+++. +++..+..+ +..+... ..++|+++|+||.|
T Consensus 79 lv~D~s~~-~s~~~~~~~~~~l~~~~~~----~~~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDP-ESLEYLSQLLKWLKNIRKR----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGH-HHHHHHHHHHHHHHHHHHH----SSCSEEEEEEE-TC
T ss_pred EEEcCCCh-HHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeccC
Confidence 99999997 778776444 4444432 25699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=151.50 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=105.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccc-------ccce-----eeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|+++|+.++|||||+++|++..... .... ......+..... ..+......+.++|||||.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~--~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAH--VEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEe--eEecCCCcEEEEEECCCHH
Confidence 3567889999999999999999998531100 0000 001111111111 1122223578999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|.......+..+|++++|+|+.++. .....+.+..+.. .++| +++++||+|+.... +..+.+.+++.
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~~~---~~~~~i~~~i~ 155 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVDDE---ELLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcchH---HHHHHHHHHHH
Confidence 98888777788999999999998862 2233344433332 5677 67899999997422 22222333333
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---------CchhHHHHHHhhcC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVK 267 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~ 267 (268)
.+-.... |. ..+++++++||++| .++.|.+.|.+++|
T Consensus 156 ~~l~~~~---------------------~~--~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYD---------------------FP--GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhC---------------------CC--cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2211100 11 22468999999998 26888999988876
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-19 Score=160.03 Aligned_cols=144 Identities=23% Similarity=0.330 Sum_probs=96.3
Q ss_pred cCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhc--cCCC
Q 024385 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFL--PQAA 142 (268)
Q Consensus 71 G~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~--~~~d 142 (268)
|.+|||||||+|++++.++.... .++.+..........++ ..+++|||||+.++... ...++ +.+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n----~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN----WPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC----CCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence 89999999999999987653222 22233222223333444 46899999999877543 33443 3789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. ++...+..++.+ .++|+++|+||+|+.+........+.+.+
T Consensus 75 vvI~VvDat~l----er~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------------------ 126 (591)
T TIGR00437 75 LVVNVVDASNL----ERNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEE------------------ 126 (591)
T ss_pred EEEEEecCCcc----hhhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHH------------------
Confidence 99999999885 222333333333 57899999999998654332222222222
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|+ ++++++++.+.
T Consensus 127 -----------------~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 127 -----------------RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred -----------------HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 123579999999999 99999999765
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=127.60 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC----CCchhhHhhhccC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH----SRLRPKLDEFLPQ 140 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~----~~~~~~~~~~~~~ 140 (268)
.||+++|+.|||||||+++|.+.......... ..+ .+ .++||||- ..++..+......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~-------i~~------~~-----~~IDTPGEyiE~~~~y~aLi~ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQA-------IEY------YD-----NTIDTPGEYIENPRFYHALIVTAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccce-------eEe------cc-----cEEECChhheeCHHHHHHHHHHHhh
Confidence 58999999999999999999987642211111 111 11 46999993 2344445556678
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC-CCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
||.+++|.|++++...+..-..-. .+.|+|=|+||+|+.. ..+.+..++.|.. .
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~-----------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~----a---------- 118 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASM-----------FNKPVIGVITKIDLPSDDANIERAKKWLKN----A---------- 118 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcc-----------cCCCEEEEEECccCccchhhHHHHHHHHHH----c----------
Confidence 999999999999733333322211 5789999999999983 3334444433332 0
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+--++|++||.+|+ |++|.++|.+
T Consensus 119 ---------------------G~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 119 ---------------------GVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred ---------------------CCCCeEEEECCCCcCHHHHHHHHhC
Confidence 11146999999999 9999999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=147.90 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=117.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------c-----------cccceeeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------H-----------QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.+++.|+.+.+.|||||..+|+...- . ...--|+..+++...+. +|+.+.++++||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~-----~~~~ylLNLIDT 132 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK-----DGQSYLLNLIDT 132 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE-----cCCceEEEeecC
Confidence 4678999999999999999999854211 0 00111333334333333 367789999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|+....+.+..|+++|+|+|++++. .-+....+...+ + .+..+|.|+||+|+..+ .++.+..++.+
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGv-qAQT~anf~lAf-e------~~L~iIpVlNKIDlp~a-dpe~V~~q~~~ 203 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGV-QAQTVANFYLAF-E------AGLAIIPVLNKIDLPSA-DPERVENQLFE 203 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCc-hHHHHHHHHHHH-H------cCCeEEEeeeccCCCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999983 233444444333 3 68899999999999865 45555555543
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. . ..-+++-+|||+|- +++++++|.+++||
T Consensus 204 lF~------------------------------~--~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 204 LFD------------------------------I--PPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred Hhc------------------------------C--CccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 222 2 22378899999998 99999999999998
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=130.73 Aligned_cols=164 Identities=23% Similarity=0.344 Sum_probs=104.0
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------C
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------R 129 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~ 129 (268)
......-|+++|.+|||||||+|.|++.+-- ..++-+|+.+... ....+++ .+.++|.||.. .
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~i--Nff~~~~---~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLI--NFFEVDD---ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCcccee--EEEEecC---cEEEEeCCCcccccCCHHHHHH
Confidence 3456789999999999999999999996621 2223334333221 1223333 37899999954 3
Q ss_pred chhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 130 ~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
+......|++. ..++++++|+..+ ....+..+.+++.+ .++|+++++||+|.............+.+.+
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~---~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHP---PKDLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 34445567753 5688999999987 45555566666664 7999999999999987544433333332222
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ...... .++..|+.++. ++++.+.|.+++.
T Consensus 165 ~~----------------------------~~~~~~-~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KK----------------------------PPPDDQ-WVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cC----------------------------CCCccc-eEEEEecccccCHHHHHHHHHHHhh
Confidence 10 000111 14445555555 9999999988764
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=150.26 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=102.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccccc-----ceeeccccceEE------------eecccccC--C----cee
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-----VTSMEPNEDTFV------------LHSESTKK--G----KIK 117 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~--~----~~~ 117 (268)
.++..+|+++|+.++|||||+.+|.+....... -.|+........ +......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356789999999999999999999653111000 011211111101 00000001 1 125
Q ss_pred eEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH
Q 024385 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF 197 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 197 (268)
.+++|||||+++|..........+|++++|+|++++. ........+..+... ...|+++|+||+|+.......+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-~~~~t~~~l~~l~~~-----~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-PQPQTKEHLMALDII-----GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-CChhHHHHHHHHHHc-----CCCcEEEEEEeeccccchhHHH
Confidence 7899999999988776666677789999999999751 112222222222211 2347999999999975432211
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 198 IRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 198 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+...++. ....+++++++||++|+ +++|+++|.+.++
T Consensus 160 ~~~~i~~~l~~-----------------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKG-----------------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhcc-----------------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 11222211110 00234689999999998 9999999998765
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=149.68 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=104.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-------cccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|++++|||||+++|++.. +...... ....+.+..........++ ..+.++|||||.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence 456789999999999999999998621 0000000 0011111111111112222 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+... ++..+.+..++..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~~---~~~~~~~~~ei~~ 156 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVDD---EELLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcch---HHHHHHHHHHHHH
Confidence 8887878888999999999999852 2333344433332 567855 67999999742 2233333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~ 267 (268)
+..... | ...+++++++||++| .+..|++.|...++
T Consensus 157 ~l~~~~---------------------~--~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYD---------------------F--PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcC---------------------C--CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 211100 0 023578999999998 27788888888765
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=147.36 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=119.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+-|+++|+...|||||+..+...+........++-.++.+..+.... ..-.+.++|||||+.|..+..+-.+-+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~---~~~~itFiDTPGHeAFt~mRaRGa~vt 79 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---KIPGITFIDTPGHEAFTAMRARGASVT 79 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC---CCceEEEEcCCcHHHHHHHHhcCCccc
Confidence 46788999999999999999999988775444444555556555553211 113789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|.+|+|+|+.++. ..+..+-+.-... .+.|++|+.||+|... .++..+...+.+.
T Consensus 80 DIaILVVa~dDGv--~pQTiEAI~hak~------a~vP~iVAiNKiDk~~-~np~~v~~el~~~---------------- 134 (509)
T COG0532 80 DIAILVVAADDGV--MPQTIEAINHAKA------AGVPIVVAINKIDKPE-ANPDKVKQELQEY---------------- 134 (509)
T ss_pred cEEEEEEEccCCc--chhHHHHHHHHHH------CCCCEEEEEecccCCC-CCHHHHHHHHHHc----------------
Confidence 9999999999972 2333333333332 7999999999999984 4455454444321
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
++.-..+...+.|+++||++|+ +++|++.|.-
T Consensus 135 -----------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 135 -----------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred -----------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 1112233566899999999999 9999987753
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=129.37 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=95.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----------hhhHh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----------RPKLD 135 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----------~~~~~ 135 (268)
.|+++|++|+|||||++.+.++.+......+. ..+... .....++ .+.+|||||+... .....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~--~~t~~~--~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP--GKTQLI--NFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC--CcceeE--EEEEccC---eEEEecCCCccccccCHHHHHHHHHHHH
Confidence 48999999999999999999655422111111 111111 1111122 7899999997542 33344
Q ss_pred hhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 136 EFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 136 ~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.|+. ..+++++++|...... .....+...+.. .+.|+++++||+|+............+...++.
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~---- 141 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPT---EIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKL---- 141 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCC---HhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh----
Confidence 4554 3578899999987521 111222222322 468999999999996544333333333332221
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++++||+++. ++++.++|.+++
T Consensus 142 --------------------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 142 --------------------------FEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred --------------------------ccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 0233478899999998 999999998864
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=149.20 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc------------cceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------------TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+...+|+++|++++|||||+++|++..-... .......+.+.......+..++ ..+.++|||||.+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChHH
Confidence 4568899999999999999999986421000 0000011111111111122222 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+..+. .....+.+..+.. .++| +++++||+|+... ++..+.+.+++..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~------~g~~~iIvvvNK~D~~~~---~~~~~~~~~~l~~ 156 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ------VGVPNIVVFLNKEDQVDD---EELLELVELEVRE 156 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEccCCCCH---HHHHHHHHHHHHH
Confidence 8888888889999999999999862 2333333333322 5678 7789999999753 2233333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-------------------chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~ 267 (268)
+-.... |. ...++++++||++|. +..|++.|.+.++
T Consensus 157 ~l~~~~---------------------~~--~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 157 LLSKYD---------------------FP--GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HHHHhC---------------------CC--CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 211100 11 224789999999885 3566777776653
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=134.89 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.-+|++++|..++||||++.+++.+-|...+-.++ +.......+.+++..+++.+|||+|++++......|++++.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktI----gvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccccccccc----chhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 46799999999999999999999988855444443 33333344455566678899999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
+.++||+.++. .+|+...+|...+.... ..+|.++|-||+|+....
T Consensus 95 a~vLVFSTTDr-~SFea~~~w~~kv~~e~----~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 95 ASVLVFSTTDR-YSFEATLEWYNKVQKET----ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred ceEEEEecccH-HHHHHHHHHHHHHHHHh----ccCCeEEeeccchhhHhh
Confidence 99999999998 89999999999988764 799999999999998654
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=126.79 Aligned_cols=174 Identities=22% Similarity=0.341 Sum_probs=128.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.-|++++|..|+|||||++.|..+...+ .++|..|+.... .+.| .+++-+|.+||..-+..|..|+..+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTSE~l------~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEEL------SIGG--MTFTTFDLGGHLQARRVWKDYFPQV 88 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCChHHh------eecC--ceEEEEccccHHHHHHHHHHHHhhh
Confidence 577899999999999999999999887644 566666665433 3344 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++.+|+.+. +.+.+.+..+..++..... .++|+++.+||+|...+...++.+..+.- . ..+.....
T Consensus 89 ~~iv~lvda~d~-er~~es~~eld~ll~~e~l--a~vp~lilgnKId~p~a~se~~l~~~l~l--~---~~t~~~~~--- 157 (193)
T KOG0077|consen 89 DAIVYLVDAYDQ-ERFAESKKELDALLSDESL--ATVPFLILGNKIDIPYAASEDELRFHLGL--S---NFTTGKGK--- 157 (193)
T ss_pred ceeEeeeehhhH-HHhHHHHHHHHHHHhHHHH--hcCcceeecccccCCCcccHHHHHHHHHH--H---HHhccccc---
Confidence 999999999998 7788898888888775443 78999999999999987755555443321 1 11111000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+ ...-...+.++.||...++ -.+.+.|+.+++
T Consensus 158 ---v~~--------~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 158 ---VNL--------TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ---ccc--------cCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 000 0011345678889988887 777788887765
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=145.32 Aligned_cols=161 Identities=24% Similarity=0.341 Sum_probs=122.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.+.|-++|+.+.|||||+..|.+..........++-.++.|.+... .| -.+++.|||||..|..+..+....+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G--~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SG--KSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CC--CEEEEecCCcHHHHHHHHhccCccc
Confidence 568899999999999999999999887654444455556676766542 45 4899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|.+++|+.+.++ -..+..+-+.-... .++|+++++||+|.... +++.+.+.+..
T Consensus 226 DIvVLVVAadDG--VmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a-~pekv~~eL~~----------------- 279 (683)
T KOG1145|consen 226 DIVVLVVAADDG--VMPQTLEAIKHAKS------ANVPIVVAINKIDKPGA-NPEKVKRELLS----------------- 279 (683)
T ss_pred cEEEEEEEccCC--ccHhHHHHHHHHHh------cCCCEEEEEeccCCCCC-CHHHHHHHHHH-----------------
Confidence 999999999997 23444444433332 79999999999997654 45555444432
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
.+....++.++++++++||++|+ ++.|.+++.
T Consensus 280 ----------~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 280 ----------QGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred ----------cCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 11224556789999999999998 999988775
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=151.02 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=84.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-ccc----------ee---eccccceEEee--cccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-GTV----------TS---MEPNEDTFVLH--SESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~~~----------~~---~~~~~~~~~~~--~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+. +.... +.+ .. .+...+..... ..+.+.+ +.+++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 4678999999999999999999963 21100 000 00 00001111111 1122333 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
|||+.+|......+++.+|++|+|+|++++.. .....++ ..... .++|+++++||+|+.... ..++.+.++
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~-~~~~~-----~~iPiiv~iNK~D~~~a~-~~~~l~~i~ 156 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE--PQTRKLM-EVCRL-----RDTPIFTFINKLDRDGRE-PLELLDEIE 156 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCC--HHHHHHH-HHHHh-----cCCCEEEEEECCcccccC-HHHHHHHHH
Confidence 99999999888889999999999999998622 2233333 33322 689999999999987654 333334444
Q ss_pred H
Q 024385 204 K 204 (268)
Q Consensus 204 ~ 204 (268)
.
T Consensus 157 ~ 157 (526)
T PRK00741 157 E 157 (526)
T ss_pred H
Confidence 3
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=135.13 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=55.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~ 136 (268)
+++++|++|+|||||+++|++....... .++..+..+ .+.+.+ ..+++|||||+.+.. .....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g------~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPG------VLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEE------EEEECC--eEEEEEECCCcccccccchhHHHHHHH
Confidence 6899999999999999999987532111 112222222 222334 589999999985432 23446
Q ss_pred hccCCCEEEEEEeCCCC
Q 024385 137 FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~ 153 (268)
+++.+|++++|+|+++.
T Consensus 74 ~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 74 VARTADLILMVLDATKP 90 (233)
T ss_pred hhccCCEEEEEecCCcc
Confidence 78999999999999876
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=141.78 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cc---------------ccceeeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---------------GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.+++.++.+-+.|||||..|++...- .. ..--|+..+..+..+.. .+|+.+.++++||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~---~~g~~Y~lnlIDT 83 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKA---KDGETYVLNLIDT 83 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEe---CCCCEEEEEEcCC
Confidence 4567899999999999999999864321 00 01112333333333332 2567799999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|.-...+.+..|.++++|+|++.+. ..+.+.+....+- .+..++-|+||+||..+ +++.+.++++.
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGv-eAQTlAN~YlAle-------~~LeIiPViNKIDLP~A-dpervk~eIe~ 154 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALE-------NNLEIIPVLNKIDLPAA-DPERVKQEIED 154 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccch-HHHHHHHHHHHHH-------cCcEEEEeeecccCCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999983 2344444444432 68899999999999754 56667766665
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. -..-..+.||||+|. |+++++.|.+++||
T Consensus 155 ~iG--------------------------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 155 IIG--------------------------------IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HhC--------------------------------CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 433 112257889999998 99999999999987
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=145.68 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=97.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------cccc------ceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT------VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|++++|||||+++|+.... ...+ ........+.......+...+ ..+.++|||||.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 4567899999999999999999985211 0000 000000111111111122233 5889999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+++..+.. .++| +++++||+|+.. .++..+.+.+++..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~---~~~~~~~i~~~i~~ 225 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD---DEELLELVELEVRE 225 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC---HHHHHHHHHHHHHH
Confidence 9888888889999999999999872 2334444443333 5677 788999999975 23334444444444
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
+-.... |. ..+++++++||.+|.
T Consensus 226 ~l~~~g---------------------~~--~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYE---------------------FP--GDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcC---------------------CC--cCcceEEEEEccccc
Confidence 311100 11 235789999998873
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=143.79 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=104.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC------Cccccc-c-----eeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG------STHQGT-V-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~------~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|+++|+.++|||||+++|.+. .....+ . .....+.+.......+..++ .++.++|||||.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence 356788999999999999999999632 100000 0 00111222222222222223 578999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|.......+..+|++++|+|+.++. ..+..+.+..+.. .++| +++++||+|+... ++..+.++.++.
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~------~gip~iIvviNKiDlv~~---~~~~~~i~~~i~ 204 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ------VGVPSLVVFLNKVDVVDD---EELLELVEMELR 204 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEeeccCCH---HHHHHHHHHHHH
Confidence 98888777788899999999998862 2233333333322 5788 5789999999742 223333443343
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC----------C-chhHHHHHHhhcC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVK 267 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~ 267 (268)
.+..... |. ..+++++++||+++ + +..|.++|.+.+|
T Consensus 205 ~~l~~~~---------------------~~--~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 205 ELLSFYK---------------------FP--GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHhC---------------------CC--CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3211100 10 23578899988743 1 6788899988775
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=144.18 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-------ccccc-----eeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-------HQGTV-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|+.++|||||+++|++... ..... .....+.+..... ..+......+.+||||||++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchHH
Confidence 5668899999999999999999974310 00000 0001111111111 12222335789999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCC
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVT 191 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~ 191 (268)
|..........+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+..
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~------~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEecccCC
Confidence 8877777788899999999999852 2233333433332 467755 6899999974
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=145.28 Aligned_cols=175 Identities=19% Similarity=0.184 Sum_probs=103.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccccc--------------------cee-----eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTS-----MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|+.++|||||+.+|+.. ...... ... .....+.......+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45678999999999999999998752 111000 000 000111111111122233
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
+.++++|||||.+|.......+..+|++++|+|+.++.- .+ .+..+.+..+.. .++| +|+++||+|
T Consensus 85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~------~gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT------LGVKQMIVCINKMD 156 (446)
T ss_pred --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 689999999999999999899999999999999998620 00 233333333322 4666 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch-----------
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS----------- 256 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~----------- 256 (268)
.....-.+...+.+.+++...-... + |. ..+++++++||++|+ +.
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~--------------g-------~~--~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G 213 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKV--------------G-------YN--PEKVPFIPISGWQGDNMIEKSDNMPWYKG 213 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhc--------------C-------CC--cccceEEEeecccCCCcccCCCCCcccch
Confidence 5432111122222222233221000 0 10 235799999999998 64
Q ss_pred -hHHHHHHhhcC
Q 024385 257 -QVEQFIREQVK 267 (268)
Q Consensus 257 -~l~~~l~~~~~ 267 (268)
.|.+.|....+
T Consensus 214 ~tL~~~l~~~~~ 225 (446)
T PTZ00141 214 PTLLEALDTLEP 225 (446)
T ss_pred HHHHHHHhCCCC
Confidence 37787776543
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=143.89 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=92.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--cccc----------------------ceeecc-----ccceEEeecccccCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQGT----------------------VTSMEP-----NEDTFVLHSESTKKGK 115 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~----------------------~~~~~~-----~~~~~~~~~~~~~~~~ 115 (268)
.+|+++|+.++|||||+++|+...- .... .....+ +.+.......+...+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 3799999999999999999864321 1000 000000 011111111122333
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
.++.++|||||++|.......+..+|++++|+|+..+.. ....+.+. +.... ...++++|+||+|+....
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~~~~-~~~~~----~~~~iivviNK~D~~~~~-- 149 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRRHSY-IASLL----GIRHVVLAVNKMDLVDYD-- 149 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHHHHH-HHHHc----CCCcEEEEEEecccccch--
Confidence 588999999999988777788899999999999988622 12222222 22211 234689999999997532
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
++..+.+..++..+..... ..+++++++||++|+ +++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~-------------------------~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLG-------------------------FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------------CCCccEEEeecccCCCCcc
Confidence 2222233333332211100 124679999999997 764
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=142.85 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc---c----cc-----eeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---G----TV-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+...+|+++|+.++|||||+++|++..... . .. .....+.+..........++ ..+.++|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence 566889999999999999999998631100 0 00 00011111111111122223 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+.. .++..+.+..++..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~------~g~p~iiVvvNK~D~~~---~~~~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD---DEELLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH------cCCCEEEEEEeecCCcc---hHHHHHHHHHHHHH
Confidence 8888888889999999999998862 2233333333332 567876 6899999964 22223333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 267 (268)
+-.... | ...+++++++||++|. +..|++.|.+.++
T Consensus 157 ~l~~~~---------------------~--~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYD---------------------F--PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcC---------------------C--CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 211100 1 0235789999999862 5678888887664
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=132.63 Aligned_cols=184 Identities=23% Similarity=0.259 Sum_probs=110.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------- 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------- 132 (268)
.+...|+++|.||+|||||.|.+++.+. ...+-...+++......++-+. .++.++||||...-..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv---~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKV---SAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcc---ccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHH
Confidence 4567899999999999999999999887 3445555555555444443333 6899999999543211
Q ss_pred ---hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHH-HHHHH
Q 024385 133 ---KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQM-EKEID 207 (268)
Q Consensus 133 ---~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l-~~~l~ 207 (268)
.....+..+|++++|+|+++.-..+ ....+..+... ..+|-++|.||+|....... -.....+ +..+.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l--~p~vl~~l~~y-----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPL--HPRVLHMLEEY-----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCcc--ChHHHHHHHHH-----hcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 1224567899999999999641111 11222222222 68899999999998765432 1111111 11111
Q ss_pred HHHHhhhccccccccCcccCCCC----CCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIP----GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~----~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
..... +.+.+.+... ...-.|++. -.+|.+||++|+ |+++.+||...+||
T Consensus 218 ~~kl~--------v~~~f~~~p~~~~~~~~~gwshf---e~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 218 KLKLE--------VQEKFTDVPSDEKWRTICGWSHF---ERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhhh--------HHHHhccCCcccccccccCcccc---eeEEEEecccccCHHHHHHHHHhcCCC
Confidence 10000 0001111000 011112222 258999999999 99999999998886
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=143.69 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=77.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccccc--------------------ceeecc-----ccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTSMEP-----NEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~--------------------~~~~~~-----~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|+.++|||||+.+|+... ..... .....+ +.+...-. .....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence 456789999999999999999986421 10000 000000 01111111 11222
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCCccCCCC-cEEEEeec
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-------SAASEYLYDILTNSTVVKKKI-PVLICCNK 186 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~-piivv~nK 186 (268)
..+.++++|||||++|......++..+|++|+|+|+.++ .+ .+..+.+..... .++ ++++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G--~~e~g~~~~~qT~eh~~~~~~------~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG--GFEAGISKDGQTREHALLAFT------LGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC--ceecccCCCchHHHHHHHHHH------cCCCcEEEEEEc
Confidence 336899999999999999999999999999999999985 12 233333332222 466 47889999
Q ss_pred CCCC
Q 024385 187 TDKV 190 (268)
Q Consensus 187 ~Dl~ 190 (268)
+|+.
T Consensus 155 mD~~ 158 (447)
T PLN00043 155 MDAT 158 (447)
T ss_pred ccCC
Confidence 9986
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=135.52 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceee-------------cc-----ccceEEeecccccCCceeeEEEEeCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM-------------EP-----NEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.++|+++|++|+|||||+++|+...-......+. .+ +.........+.+.+ +.+++||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTP 79 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTP 79 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECC
Confidence 4689999999999999999997532100000000 00 000001111223333 789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|+.+|......+++.+|++|+|+|++++.+ .....++ ..... .++|+++++||+|+....
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~--~~~~~i~-~~~~~-----~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVE--PQTRKLF-EVCRL-----RGIPIITFINKLDREGRD 139 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCcc--HHHHHHH-HHHHh-----cCCCEEEEEECCccCCCC
Confidence 999998888888999999999999988621 2222333 33322 578999999999987654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=135.92 Aligned_cols=128 Identities=24% Similarity=0.222 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccc--------------cceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--------------EDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++++..........++... .+.......+.+.+ +.+++|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999987532110001011000 00000001122233 689999999999888
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
..+..+++.+|++++|+|++.+ ... .....+..+.. .++|+++|+||+|+... ..+...+.+.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g-~~~-~~~~~~~~~~~------~~~p~iivvNK~D~~~~-~~~~~~~~l~~ 142 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSG-VEV-GTEKLWEFADE------AGIPRIIFINKMDRERA-DFDKTLAALQE 142 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECCccCCC-CHHHHHHHHHH
Confidence 8888999999999999999987 322 22222332222 57899999999999765 33334444433
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=134.20 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccccc---------ceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT---------VTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++|+...-.... .....+ +.+.......+.+.+ +.+.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999642110000 000001 111111111223334 689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
..+..+++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVE--PQTETVWRQADR------YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 999999999999999999998622 222333333322 67899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=142.07 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=75.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccc----------e------------eec-----cccceEEeecccc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV----------T------------SME-----PNEDTFVLHSEST 111 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~----------~------------~~~-----~~~~~~~~~~~~~ 111 (268)
.+...+|+++|++++|||||+++|+...- ..... . ... .+.+.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35678999999999999999999875431 10000 0 000 0011111111122
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.++ ..+.++|||||.+|.......+..+|++++|+|+..+... ...+.+ .+.... ...|+++++||+|+..
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~--qt~~~~-~l~~~l----g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD--QTRRHS-FIATLL----GIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc--cchHHH-HHHHHh----CCCceEEEEEeecccc
Confidence 233 5889999999999877777778999999999999886221 111111 122111 2347899999999974
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=144.76 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=87.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-c----------cceeecc---ccceEEeecccccCCceeeEEEEeCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-G----------TVTSMEP---NEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.+.++|+++|++|+|||||+++|+. +.... + +.....+ ..+............+.+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 21110 0 0000000 01111111111222233789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
|+.+|......+++.+|++|+|+|++++ .......+...... .++|+++++||+|+... ..+++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~~ 159 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG---VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVENE 159 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHHH
Confidence 9999988888899999999999999986 22222333334432 57899999999998653 344555555544
Q ss_pred H
Q 024385 206 I 206 (268)
Q Consensus 206 l 206 (268)
+
T Consensus 160 l 160 (527)
T TIGR00503 160 L 160 (527)
T ss_pred h
Confidence 3
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=125.37 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh-----c
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF-----L 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~-----~ 138 (268)
+.+|+++|.+|+|||||+|.|++............. ...+........+....+.+|||||..+.......| +
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV--VETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCc--cccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 358999999999999999999986543211111110 000000000000111368999999987543333333 5
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+|++++|.|. . +......+...+.. .+.|+++|+||+|+..
T Consensus 79 ~~~d~~l~v~~~-~----~~~~d~~~~~~l~~-----~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 79 SEYDFFIIISST-R----FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDL 121 (197)
T ss_pred cCcCEEEEEeCC-C----CCHHHHHHHHHHHH-----hCCCEEEEEecccchh
Confidence 678888887432 2 33444444444443 4679999999999954
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=141.15 Aligned_cols=173 Identities=19% Similarity=0.164 Sum_probs=106.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCc---ccccce--eeccccceE---------------Eeeccc------ccCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVT--SMEPNEDTF---------------VLHSES------TKKG 114 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~~~--~~~~~~~~~---------------~~~~~~------~~~~ 114 (268)
+....+|.++|+.++|||||+..|++... ..+... |+....... .++... ...+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45778999999999999999999986432 111111 111100000 000000 0000
Q ss_pred ----ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 115 ----KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 115 ----~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
....+.++|+|||++|.......+..+|++++|+|+.++ ....+..+.+..+... .-.|+++|+||+|+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-~~~~qT~ehl~i~~~l-----gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-CPQPQTSEHLAAVEIM-----KLKHIIILQNKIDLV 184 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-ccchhhHHHHHHHHHc-----CCCcEEEEEeccccc
Confidence 013689999999999988888888999999999999974 1122233333322211 234689999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+....++..+.+.+.+... ....++++++||++|+ ++.|+++|.+.+||
T Consensus 185 ~~~~~~~~~~ei~~~l~~~-----------------------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGT-----------------------------IADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CHHHHHHHHHHHHHHHHhh-----------------------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 5332222222322222110 0234689999999999 99999999987764
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=141.84 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=110.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|+.||||||||-.+...+|+. .+.+...+..++.+++.+. +...++||+...+-+......++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~----~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVD----AVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccc----cccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhc
Confidence 467899999999999999999999998854 3333444455666666555 6789999998777677788999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|++++|+++++. ++++.+...|..+++.......++|||+|+||+|.....+. .+...+...++++.+...
T Consensus 81 ~vi~lvyavd~~-~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 81 DVICLVYAVDDE-STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIET 151 (625)
T ss_pred CEEEEEEecCCh-HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHH
Confidence 999999999997 78898888777777765544579999999999999876544 222234444444444433
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=112.77 Aligned_cols=165 Identities=19% Similarity=0.326 Sum_probs=112.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-hhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-RPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-~~~~~~~~~~ 140 (268)
.+..+|+++|..++|||+++.++..++-..+ ....|+......-..-+.+|..-.+.++||+|...+ ..+-.+|++-
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~--~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPG--TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCC--CccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 4678999999999999999999987764221 223333333333322333454457999999998877 5566789999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|||+.++ +||+.+...-..+-.+.. +..+||++++||+|+......+......
T Consensus 85 aDafVLVYs~~d~-eSf~rv~llKk~Idk~Kd--KKEvpiVVLaN~rdr~~p~~vd~d~A~~------------------ 143 (198)
T KOG3883|consen 85 ADAFVLVYSPMDP-ESFQRVELLKKEIDKHKD--KKEVPIVVLANKRDRAEPREVDMDVAQI------------------ 143 (198)
T ss_pred CceEEEEecCCCH-HHHHHHHHHHHHHhhccc--cccccEEEEechhhcccchhcCHHHHHH------------------
Confidence 9999999999998 888877655555544332 4789999999999997544332211111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|++ ...+..++++|.+.. +-+-+-.+..+
T Consensus 144 ---------------Wa~-rEkvkl~eVta~dR~sL~epf~~l~~r 173 (198)
T KOG3883|consen 144 ---------------WAK-REKVKLWEVTAMDRPSLYEPFTYLASR 173 (198)
T ss_pred ---------------HHh-hhheeEEEEEeccchhhhhHHHHHHHh
Confidence 111 445788889998876 55555555544
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=148.43 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=85.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee--------------ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+...-........ ..+++.......+.+.+ +.+++|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 456799999999999999999997422110000000 01111111122233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
.++......+++.+|++++|+|+.++ .... ....+..+.. .++|+++|+||+|+.... .....+.+.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g-~~~~-~~~~~~~~~~------~~~p~ivviNK~D~~~~~-~~~~~~~i~ 152 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGG-VQPQ-SETVWRQANR------YEVPRIAFVNKMDKTGAN-FLRVVNQIK 152 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCC-CChh-HHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHH
Confidence 99988889999999999999999986 2222 2233333222 578999999999998643 333333333
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=125.60 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-----HhhhccC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-----LDEFLPQ 140 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-----~~~~~~~ 140 (268)
||+++|+.++||||..+-+..+-.+..+ ...+++.... ...+...+. ..+++||+||+..+... ....++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve--~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVE--KSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEE--EEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCce--EEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhc
Confidence 7999999999999999988876543322 2233332211 111211222 68999999999876443 5677899
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|||+|+... + +.+...++...+.......+++.+.++++|+|+.......++.+.+.+.+.+......
T Consensus 77 v~~LIyV~D~qs~-~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~------ 148 (232)
T PF04670_consen 77 VGVLIYVFDAQSD-D-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG------ 148 (232)
T ss_dssp ESEEEEEEETT-S-T-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred cCEEEEEEEcccc-c-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 9999999999953 2 4445455555444322234899999999999998776666666666555554311100
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 268 (268)
.+.+.|+.+|-.+..+-+....+.+.+-|
T Consensus 149 -------------------~~~~~~~~TSI~D~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 149 -------------------IEDITFFLTSIWDESLYEAWSKIVQKLIP 177 (232)
T ss_dssp --------------------TSEEEEEE-TTSTHHHHHHHHHHHTTST
T ss_pred -------------------ccceEEEeccCcCcHHHHHHHHHHHHHcc
Confidence 11478999999887655555555554443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=127.37 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=107.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~ 132 (268)
+....+.++|.||+|||||++++...+. .....+|..|+.+...+ ++. ..+++-|.||..+-. .
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y------ddf-~q~tVADiPGiI~GAh~nkGlG~ 266 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY------DDF-SQITVADIPGIIEGAHMNKGLGY 266 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec------ccc-ceeEeccCccccccccccCcccH
Confidence 3456789999999999999999988754 33456788888774333 232 359999999976432 2
Q ss_pred hHhhhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...+++..|+.++||+|.+.+. +.++.+...+.++-.+.. ...+.|.+||+||+|+.+.. .+.+++...+
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~-- 338 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPEAE-----KNLLSSLAKR-- 338 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchhHH-----HHHHHHHHHH--
Confidence 3556778999999999999861 224444443333322211 12688999999999995221 1112221111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+..++++||++|+ +++|.+.|.+.
T Consensus 339 -----------------------------lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 339 -----------------------------LQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -----------------------------cCCCcEEEeeeccccchHHHHHHHhhc
Confidence 122369999999999 99999988764
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=139.72 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=143.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...++.++.+.+.+.++|+..++.+..+...|+......++..+.+ .+...+++++|.||+|||||+|.++...
T Consensus 119 ~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsI------Dp~trTlllcG~PNVGKSSf~~~vtrad 192 (620)
T KOG1490|consen 119 YGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAI------DPNTRTLLVCGYPNVGKSSFNNKVTRAD 192 (620)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC------CCCcCeEEEecCCCCCcHhhcccccccc
Confidence 3477889999999999999999999999999998888888877665 5788999999999999999999988776
Q ss_pred cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----hhhHhh-----hccCCCEEEEEEeCCCCC-CCHH
Q 024385 89 THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----RPKLDE-----FLPQAAGIVFVVDALEFL-PNCS 158 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----~~~~~~-----~~~~~d~ii~v~d~~~~~-~~~~ 158 (268)
.. +..+..++.... -. +.+.+-..++++||||..+. +..... ..+--.+|+|++|.++.+ .+..
T Consensus 193 ve---vqpYaFTTksL~-vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva 266 (620)
T KOG1490|consen 193 DE---VQPYAFTTKLLL-VG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVA 266 (620)
T ss_pred cc---cCCcccccchhh-hh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHH
Confidence 52 222222221111 11 11222258899999997652 111111 111224699999998753 3566
Q ss_pred HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeecc
Q 024385 159 AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQ 238 (268)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~ 238 (268)
.....+..+... ..+.|+|+|+||+|+....+.++-.+.+.+.+..
T Consensus 267 ~QvkLfhsIKpL----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~------------------------------ 312 (620)
T KOG1490|consen 267 AQVKLYHSIKPL----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID------------------------------ 312 (620)
T ss_pred HHHHHHHHhHHH----hcCCceEEEeecccccCccccCHHHHHHHHHHHh------------------------------
Confidence 666666655442 3799999999999998887776666555554443
Q ss_pred CCceeEEEEeeeccCC-chhH
Q 024385 239 CHNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 239 ~~~~~~~~~~Sa~~g~-i~~l 258 (268)
..+++++++|..+.+ +.++
T Consensus 313 -~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 313 -DGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred -ccCceEEEecccchhceeeH
Confidence 556899999999876 4443
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=142.08 Aligned_cols=150 Identities=27% Similarity=0.360 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccccee--eccccceEEeecccccCCceeeEEEEeCCCCCCchhh------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS--MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~ 134 (268)
+..+++++|.||||||||+|+|++.+...+..+. ++...+. ....+ ..++++|+||.-..... .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~------~~~~~--~~i~ivDLPG~YSL~~~S~DE~Va 73 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGK------LKYKG--HEIEIVDLPGTYSLTAYSEDEKVA 73 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEE------EEecC--ceEEEEeCCCcCCCCCCCchHHHH
Confidence 4567999999999999999999998764444332 2222222 23334 47999999996544322 3
Q ss_pred hhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 135 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+|+ ...|++|-|+|+++. ++......++++ -+.|+++++|++|........-..+.+++.
T Consensus 74 r~~ll~~~~D~ivnVvDAtnL----eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~------- 136 (653)
T COG0370 74 RDFLLEGKPDLIVNVVDATNL----ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKL------- 136 (653)
T ss_pred HHHHhcCCCCEEEEEcccchH----HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHH-------
Confidence 4555 357999999999995 555555666665 688999999999998776655555556553
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++++++||++|+ ++++.+.+.+.
T Consensus 137 ----------------------------LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 137 ----------------------------LGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ----------------------------hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 34689999999999 99999888764
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-17 Score=122.88 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|..|.||||++++...+.|...+.++.........+.. ..| .+++..|||+|++.+......|+-++.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t---n~g-~irf~~wdtagqEk~gglrdgyyI~~q 84 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT---NRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQ 84 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec---ccC-cEEEEeeecccceeecccccccEEecc
Confidence 4679999999999999999999999997766665544332222221 123 379999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+.|+++|++.. -++.....|..++.+.. .++||++++||.|.........
T Consensus 85 cAiimFdVtsr-~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k~k------------------------- 134 (216)
T KOG0096|consen 85 CAIIMFDVTSR-FTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVKAK------------------------- 134 (216)
T ss_pred eeEEEeeeeeh-hhhhcchHHHHHHHHHh----cCCCeeeeccceeccccccccc-------------------------
Confidence 99999999987 67889999999998754 6799999999999865431100
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+|- ...+++++++||++.- .+.=+-|+.+.+
T Consensus 135 ----------~v~~~-rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 135 ----------PVSFH-RKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ----------cceee-ecccceeEEeecccccccccchHHHhhhh
Confidence 00011 1457889999999865 777777777654
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=145.37 Aligned_cols=122 Identities=19% Similarity=0.116 Sum_probs=75.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cce-----eeccc----------------------cceEEeecccc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVT-----SMEPN----------------------EDTFVLHSEST 111 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~-----~~~~~----------------------~~~~~~~~~~~ 111 (268)
.+...+|+++|++|+|||||+++|+...-... ... +...+ .+.........
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45667899999999999999999986432100 000 00000 01011111122
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+ ..+.++|||||++|.......+..+|++++|+|+..+.. ....+.+..+... ...|+++++||+|+..
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~~-----~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSFIASLL-----GIRHVVLAVNKMDLVD 171 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHHh-----CCCeEEEEEEeccccc
Confidence 233 578999999999887777777899999999999987621 1112222212111 2357899999999974
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=131.78 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=122.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--ccccc-c-------eeec--cccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT-V-------TSME--PNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.-++|+|+.+...|||||+..|+.+. |.... + ...+ ..++....+..+.+++ ++++|+|||||.+|
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADF 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADF 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCc
Confidence 45789999999999999999997653 21110 0 0111 2233344445566666 89999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+.+...|++++++|+.++ .+.+.+-.+...+. .+.+.|+|+||+|...+++.+-+.+.+.-.++ +
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EG--pMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~-L- 151 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVE-L- 151 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccC--CCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-h-
Confidence 99999999999999999999997 46777777777776 57788999999999887765555444443222 1
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~p 268 (268)
+.. -+ ...++++..||+.| +++.|++.|.+++|+
T Consensus 152 -----------------~A~-----de--QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 152 -----------------GAT-----DE--QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred -----------------CCC-----hh--hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 110 11 12357788898866 288999999999885
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=145.50 Aligned_cols=121 Identities=24% Similarity=0.224 Sum_probs=81.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--------cc-cceeec-----cccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--------QG-TVTSME-----PNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--------~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|+.|+|||||+++|+...-. .. ...... ...+.......+.+.+ +.+++|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 45689999999999999999999753210 00 000000 0000000011122233 78999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.++...+..+++.+|++++|+|++++ ..... ...+..+.. .++|+++|+||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~-~~~~~-~~~~~~~~~------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTG-VQPQT-ETVWRQADR------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHHHh------cCCCEEEEEECCCCCCC
Confidence 99999999999999999999999987 33332 233333322 57899999999999864
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-16 Score=129.54 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=96.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccce---------------------ee----ccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVT---------------------SM----EPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~---------------------~~----~~~~~~~~~~~~~~~~~ 114 (268)
++..+++++|+.++|||||+.+|+.+. ++...+. +. +.+.+...-. .....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~--~~fet 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAH--SKFET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEE--EEeec
Confidence 567899999999999999999986432 1110000 00 0001111111 11222
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--C---CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--P---NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+.++|+|+|||.+|-..+.....++|+.|+|+|+..++ . .-.+.++.+.-.... .-..+||++||+|+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~ 157 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDL 157 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccc
Confidence 2268999999999999999999999999999999999871 0 111122222111111 34568999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.+- +. +-.+.+..++..+..... ....+++|+||||.+|+
T Consensus 158 v~w-de-~rf~ei~~~v~~l~k~~G-----------------------~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 158 VSW-DE-ERFEEIVSEVSKLLKMVG-----------------------YNPKDVPFIPISGFKGD 197 (428)
T ss_pred ccc-CH-HHHHHHHHHHHHHHHHcC-----------------------CCccCCeEEecccccCC
Confidence 862 22 222233333333322211 11346899999999997
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=110.97 Aligned_cols=107 Identities=23% Similarity=0.293 Sum_probs=67.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------hHhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------KLDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------~~~~ 136 (268)
+|+++|.+|+|||||+|+|++.+.. ..+..+..+...........+ ..+.++||||..+... ....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~---~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA---KVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS---EESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccc---cccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHH
Confidence 6899999999999999999986431 112222222222222223344 4678999999765311 1333
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.+..+|++++|+|+++. .......+.+.++ .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~---~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNP---ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSH---SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCC---CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 44889999999997773 2222223322222 68899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=128.52 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecc---------------cccCC-ceeeEEEEeCCCC-
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE---------------STKKG-KIKPVHLVDVPGH- 127 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~DtpG~- 127 (268)
|+++|.+|+|||||+|++++...... ..+++.|+.+...+... ...++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765221 13455666655443211 11122 2368999999998
Q ss_pred ---CCchhhHh---hhccCCCEEEEEEeCCC
Q 024385 128 ---SRLRPKLD---EFLPQAAGIVFVVDALE 152 (268)
Q Consensus 128 ---~~~~~~~~---~~~~~~d~ii~v~d~~~ 152 (268)
.+++.... .+++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 33444333 45899999999999974
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=141.13 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=85.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc---------ee-----eccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---------TS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+...-..... .. ...+.+.......+.+++ ..++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 456799999999999999999997421100000 00 011111111112233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++...+...++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.... .....+.+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~--~qt~~i~~~~~~------~~~p~iv~iNK~D~~~~~-~~~~~~~i~~ 151 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVE--PQSETVWRQADK------YGVPRIVFVNKMDRIGAD-FFRSVEQIKD 151 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9988889999999999999999998722 222233333322 578999999999998643 3334344433
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=127.78 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=93.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-h--------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-R--------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-~--------~ 132 (268)
+.+.+|+++|+||+|||||+|.|.+... .+.+..++++++.+...++++| +++.+.||+|..+- . .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr---sIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~ 340 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR---SIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIE 340 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc---eEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHH
Confidence 5679999999999999999999999876 6778888899999998899999 79999999997651 1 1
Q ss_pred hHhhhccCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCC---ccCCCCcEEEEeecCCCCCC
Q 024385 133 KLDEFLPQAAGIVFVVDALEFL-PNCSAASEYLYDILTNST---VVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~---~~~~~~piivv~nK~Dl~~~ 192 (268)
.....++.+|++++|+|+.... ++...+.+.+...-.... ......|++++.||+|+...
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 1335677899999999994431 223333344433322111 01145899999999999765
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=139.20 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-c------ccee-----eccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-G------TVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+. +.... + .... .....+.......+.+.+ ..++++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4567999999999999999999974 21100 0 0000 011122222122233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++.......++.+|++|+|+|+..+.. .+....+..+.. .++|+++++||+|+.... .....+.+.+
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~--~qt~~~~~~~~~------~~~p~iv~vNK~D~~~~~-~~~~~~~i~~ 153 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVE--PQSETVWRQADK------YKVPRIAFVNKMDRTGAD-FYRVVEQIKD 153 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9888888888999999999999988721 222333333332 678999999999998644 3334444433
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=120.96 Aligned_cols=156 Identities=24% Similarity=0.343 Sum_probs=107.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--hhHh--
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--PKLD-- 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--~~~~-- 135 (268)
..-+.|.++|.+|+|||||+|+|++.... ..-+.|..|++.+..... | ..+.+-||-|.-+-- .+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-----g--~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-----G--RKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-----C--ceEEEecCccCcccCChHHHHHH
Confidence 34678999999999999999999976542 223567777766655542 3 478999999965321 1111
Q ss_pred ----hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 136 ----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 136 ----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
.....+|.++.|+|++++ . ......-..+++..... ...|+|+|.||+|+..... .... +..
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp-~-~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~---~~~~----~~~--- 328 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDP-E-ILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEE---ILAE----LER--- 328 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCCh-h-HHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchh---hhhh----hhh---
Confidence 233579999999999997 4 34444444555554332 5699999999999875433 1111 110
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... ..+.+||++|. ++.|++.|.+.++
T Consensus 329 ----------------------------~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 329 ----------------------------GSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred ----------------------------cCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 111 47889999999 9999999988764
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=124.69 Aligned_cols=136 Identities=15% Similarity=0.294 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccce------eeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---- 133 (268)
.++|+++|.+|+|||||+|+|.+..+...... ...++.........+..+|..+.+++|||||..+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 56899999999999999999998876432110 12222222233334445666678999999996543211
Q ss_pred ----------Hh------------hhcc--CCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 134 ----------LD------------EFLP--QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 134 ----------~~------------~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.. .++. .+|+++|+++++.. .+... .+.+..+. ..+|+++|+||+|
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~--~l~~~D~~~lk~l~-------~~v~vi~VinK~D 154 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH--GLKPLDIEFMKRLS-------KRVNIIPVIAKAD 154 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC--CCCHHHHHHHHHHh-------ccCCEEEEEECCC
Confidence 01 1222 47889999998763 23333 33333332 3689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 024385 189 KVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~ 208 (268)
+..........+.+.+.++.
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 97644444445555555544
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=118.33 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=114.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPK 133 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~ 133 (268)
.....+++++|.+|+|||||+|+|..++...- +..+...+........+++ ..+.+|||||.++ ++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v---~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~ 110 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV---SKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQL 110 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee---eecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHH
Confidence 45778999999999999999999997665221 1111111111222233344 4789999999876 6677
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC---------CHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH---------TKEFIRKQMEK 204 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~---------~~~~~~~~l~~ 204 (268)
...++...|.+++++|+.++ .+..-..++.++.... .+.|+++++|.+|..... ....+++.+++
T Consensus 111 ~~d~l~~~DLvL~l~~~~dr--aL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDR--ALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHhhhccEEEEeccCCCc--cccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 78899999999999999986 3445556666666543 458999999999986542 33556677777
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+...+..+. +++..|+-.+- ++.+...+.+.+|
T Consensus 185 k~~~~~~~~q~V~--------------------------pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 KAEALGRLFQEVK--------------------------PVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHhhcC--------------------------CeEEeccccCccHHHHHHHHHHhCc
Confidence 7766644443321 34445545554 7777777776654
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=114.05 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=80.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-------hH---
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-------KL--- 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------~~--- 134 (268)
.+|+++|.+|+|||||+|.+++......... .+..+.........+.| ..+.++||||..+... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS--ASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC--CCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 3799999999999999999998764221110 00111111111122244 5799999999765421 11
Q ss_pred -hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 135 -DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 135 -~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
.....+.|++++|+|+...........+++..+... ..-.++++|+|+.|.......++....-...++.+
T Consensus 77 ~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~----~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE----KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL 148 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh----HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHH
Confidence 122357899999999987422333444444444321 12368899999999877655554433333344444
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=122.85 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH--cCCc--------------ccccceeeccccceEEeecccccCCceeeEEEEeCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR--DGST--------------HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.++++++|+-+|++|||||..+|+ ++.. ..+....++.+.+.....+.++.+...+.+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 467889999999999999998863 2211 111111233344444444555555555899999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
||++|..-.-+-+..+|.+++|+|+..+ ++.....|-++.+. .++||+-++||+|.... .+-++...++++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG---iE~qT~KLfeVcrl-----R~iPI~TFiNKlDR~~r-dP~ELLdEiE~~ 160 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG---IEPQTLKLFEVCRL-----RDIPIFTFINKLDREGR-DPLELLDEIEEE 160 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC---ccHHHHHHHHHHhh-----cCCceEEEeeccccccC-ChHHHHHHHHHH
Confidence 9999999999999999999999999998 55555566666654 79999999999998764 445566666655
Q ss_pred HH
Q 024385 206 ID 207 (268)
Q Consensus 206 l~ 207 (268)
+.
T Consensus 161 L~ 162 (528)
T COG4108 161 LG 162 (528)
T ss_pred hC
Confidence 54
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.28 Aligned_cols=138 Identities=23% Similarity=0.251 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCCc---hhhHhh---hccC--CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 118 PVHLVDVPGHSRL---RPKLDE---FLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 118 ~~~i~DtpG~~~~---~~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+|||||+.++ +..... ++.. ++++++|+|+............++....... ..+.|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~---~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL---RLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH---HcCCCEEEEEEhHhh
Confidence 6899999998764 333322 2333 8999999999775222222222222222111 168999999999999
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 190 VTAHTKEFIRKQMEK---EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
......+...+.+.. .+..+....... ...... +.. .+.+.....+++++||++++ +++|.++|.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~--~~~-----~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQ--GLLSLE--LLR-----ALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchH--HHHHHH--HHH-----HHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 876555444443331 011110000000 000000 000 01111223578999999998 99999999998
Q ss_pred cC
Q 024385 266 VK 267 (268)
Q Consensus 266 ~~ 267 (268)
++
T Consensus 246 l~ 247 (253)
T PRK13768 246 FC 247 (253)
T ss_pred cC
Confidence 75
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=135.62 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHcCCcccccceeeccccceEEeeccccc------------CCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 75 SGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK------------KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 75 ~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
++||||+.++.+.+........++-..+.+.++..... .-+.-.+.+||||||+.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999887755444444444555444432100 000013899999999999888888889999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------HHHHHHHHHHHHHH
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KEFIRKQMEKEIDK 208 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~~~~~~l~~~l~~ 208 (268)
++++|+|++++.. ......+. ++.. .++|+++|+||+|+..... .+...+.++..+.+
T Consensus 552 ivlLVVDa~~Gi~--~qT~e~I~-~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFK--PQTIEAIN-ILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCC--HhHHHHHH-HHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999987511 12222222 2222 5789999999999964321 01112222222211
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+... ........... ....+....++++++||+||+ |++|.++|..
T Consensus 624 v~~~---L~~~G~~~e~~-------~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGK---LYELGFDADRF-------DRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhH---HHhcCcchhhh-------hhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1100 00000000000 012233567899999999999 9999998864
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=125.10 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=72.8
Q ss_pred eeEEEEeCCCCCCc-----hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRL-----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+.++||||.... .......+..+|+|+||+|+... . ......+...+... ..+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~-~--s~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL-K--SISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC-C--ChhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 46789999997642 22345678999999999999875 1 22223333333321 12369999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 192 AHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 192 ~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
... .+.+.+.+...+... ......++++||++|. ++.|.+.|.++
T Consensus 304 reeddkE~Lle~V~~~L~q~-----------------------------~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG-----------------------------CITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cccchHHHHHHHHHHHHHhc-----------------------------CCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 322 333333333222210 0122369999999999 99999998874
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-15 Score=117.36 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=112.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc---CCcccccceeeccccceEEeeccccc--------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD---GSTHQGTVTSMEPNEDTFVLHSESTK-------------------------- 112 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 112 (268)
.++..|+++|..|+|||||+.||.. .+....++....|-....+++..+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 5677899999999999999999853 22222234344443332222222111
Q ss_pred ---------------CCceeeEEEEeCCCCCCchh------hHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 024385 113 ---------------KGKIKPVHLVDVPGHSRLRP------KLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILT 169 (268)
Q Consensus 113 ---------------~~~~~~~~i~DtpG~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~ 169 (268)
........++|||||.+.-. .+-..+ ...-+++||+|.........-+.+.+...-.
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 11225688999999875211 111112 1235789999987652222333333332211
Q ss_pred cCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEee
Q 024385 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 249 (268)
Q Consensus 170 ~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~S 249 (268)
.++...|+|+|.||+|+.+..-..++...++.--+.+....+.. ..--.....+.+...+.+...+.+|
T Consensus 177 ---lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y--------~s~l~~SmSL~leeFY~~lrtv~VS 245 (366)
T KOG1532|consen 177 ---LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSY--------MSNLTRSMSLMLEEFYRSLRTVGVS 245 (366)
T ss_pred ---HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccch--------hHHhhhhHHHHHHHHHhhCceEEEe
Confidence 12378999999999999987766666666665444443211110 0000011223355557788999999
Q ss_pred eccCC-chhHHHHHHhh
Q 024385 250 GLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 250 a~~g~-i~~l~~~l~~~ 265 (268)
|.+|. .++++..+.+.
T Consensus 246 s~tG~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 246 SVTGEGFDDFFTAVDES 262 (366)
T ss_pred cccCCcHHHHHHHHHHH
Confidence 99999 88888777654
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=129.84 Aligned_cols=189 Identities=19% Similarity=0.303 Sum_probs=117.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecc--------cccCCc----eeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE--------STKKGK----IKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~i~DtpG~~~ 129 (268)
-+.+-|||+|+.++|||-|+..+.+.+...+...+++-+++...++.. +.-++. .-.+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 356789999999999999999999877654444444444444444332 111111 01468999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCH----HHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTK----EFIRKQM 202 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~----~~~~~~l 202 (268)
|..+..+....||.+|+|+|+..+.+ ...-.-..+++. .+.|+||++||+|..-. ... +.+.++-
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGle---pqtiESi~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLE---PQTIESINLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCC---cchhHHHHHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 99999999999999999999998732 222222233332 78999999999997521 111 1122222
Q ss_pred HHHHHHHHHhhhc----cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 203 EKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 203 ~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++.++.+... ......+..++ |.-.....-+.++|+||.+|+ |.+|.-||.++
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~Ly-------ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELY-------YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhe-------eecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 2222222222221 11112222221 111222456889999999999 99999888765
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=133.00 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-----cce-----------eeccccceEEeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-----TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|+.++|||||+.+|+...- ... ... |+......+.+ ...+..+.++++|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~----~~~~~~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH----EYEGKEYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE----EecCCcEEEEEEc
Confidence 4677999999999999999999975321 000 000 01101111111 1233347899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRK 200 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~ 200 (268)
|||+.+|.......++.+|++|+|+|+..+.. ......+..... .+.|.++++||+|+... ...+++.+
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~--~~t~~~~~~~~~------~~~~~iv~iNK~D~~~~~~~~~~~~~~~ 165 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM--PQTETVLRQALR------ERVKPVLFINKVDRLIKELKLTPQEMQQ 165 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCC--ccHHHHHHHHHH------cCCCeEEEEECchhhcccccCCHHHHHH
Confidence 99999999889999999999999999988722 223333333333 45688999999998743 24556666
Q ss_pred HHHHHHHHH
Q 024385 201 QMEKEIDKL 209 (268)
Q Consensus 201 ~l~~~l~~~ 209 (268)
.+.+.++.+
T Consensus 166 ~~~~~~~e~ 174 (731)
T PRK07560 166 RLLKIIKDV 174 (731)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=116.72 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~ 135 (268)
-.|.++|.||+|||||++.+...+. .....+|..|+.+..... .+ ..+.+-|.||..+-. ....
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-----~~--~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-----GG--ESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-----CC--CcEEEecCcccccccccCCCccHHHH
Confidence 4688999999999999999987654 223456666666654431 12 368999999976432 3355
Q ss_pred hhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 136 EFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+++.+|.++++|+|.+... +..+.......++..+.. .-.+.|.+||+||+|+..
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCc
Confidence 7788999999999998652 123333333333333211 126889999999999654
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=130.83 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=96.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--c----ccc-e-----------eeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--Q----GTV-T-----------SMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~----~~~-~-----------~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
.+.++|+++|+.++|||||+.+|+...-. . ... . |+......+.+... -...+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 56789999999999999999999754310 0 000 0 11111111111100 001223
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~ 192 (268)
.+.++++|||||.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.. .
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCcccchhhc
Confidence 4788999999999999999999999999999999998732 222333444433 6889999999999873 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.++....+.+.+++++....
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 2456667777777777764443
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=119.34 Aligned_cols=87 Identities=30% Similarity=0.378 Sum_probs=59.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc---------------ccCC-ceeeEEEEeCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES---------------TKKG-KIKPVHLVDVPG 126 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~i~DtpG 126 (268)
.+|+++|.||+|||||+|+|++..+... ..+|+.|+.+...++..+ ..++ ....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998876322 234556666554432210 0122 225789999999
Q ss_pred CCC----chhhHhh---hccCCCEEEEEEeCC
Q 024385 127 HSR----LRPKLDE---FLPQAAGIVFVVDAL 151 (268)
Q Consensus 127 ~~~----~~~~~~~---~~~~~d~ii~v~d~~ 151 (268)
... ....... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 2233333 488999999999997
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=130.81 Aligned_cols=123 Identities=23% Similarity=0.235 Sum_probs=77.4
Q ss_pred EcCCCCcHHHHHHHHHcCCcccccceee--------------ccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSM--------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 70 vG~~~~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
+|++|+|||||+++|+...-.......+ ..+.+.......+.+.+ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 5999999999999995432100000000 01111111111223334 7899999999998888888
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
.+++.+|++++|+|++.+ .... ....+..+.. .++|+++|+||+|+.... .....+.+.
T Consensus 79 ~~l~~aD~vllvvd~~~~-~~~~-~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~ 137 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGG-VEPQ-TETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQ 137 (668)
T ss_pred HHHHHhCeEEEEEeCCCC-cCHH-HHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHH
Confidence 999999999999999986 3222 2233333332 578999999999997643 333333333
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-15 Score=114.45 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc-eeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK-IKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
-++++|+|..|+|||+++++.....|...+..++.. ..--....+++. .+++++||.+|++++..+..-|++.+.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgv----dfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGV----DFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhH----HHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 468999999999999999999998886555444332 222233444443 267899999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+..+|||.+.. .+++....|..++...... .....|+++..||||.......+ .-..+.+
T Consensus 101 ~~~iVfdvt~s-~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~----------------- 161 (229)
T KOG4423|consen 101 GAFIVFDVTRS-LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDN----------------- 161 (229)
T ss_pred ceEEEEEcccc-ccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHH-----------------
Confidence 99999999997 7899999999988765432 23567899999999986532221 1112221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|..-.+-...+++|||... |++....+.+.
T Consensus 162 --------------f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 162 --------------FKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred --------------HHhccCccceeeeccccccChhHHHHHHHHH
Confidence 1111333468999999976 88887777664
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=101.06 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|.++|++..|||||+-...++.+.+....+.+. ......+.+.|..+.+.|||.+|++++.....-....+-+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~Gv----N~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGV----NFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCc----cceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 579999999999999999999998875444333322 2233445556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|++|.+.+ +++..+.+|..+....+. ..+| |+||+|-|+.-..+++. ...+.+.....
T Consensus 96 IlFmFDLt~r-~TLnSi~~WY~QAr~~Nk---tAiP-ilvGTKyD~fi~lp~e~-Q~~I~~qar~Y-------------- 155 (205)
T KOG1673|consen 96 ILFMFDLTRR-STLNSIKEWYRQARGLNK---TAIP-ILVGTKYDLFIDLPPEL-QETISRQARKY-------------- 155 (205)
T ss_pred EEEEEecCch-HHHHHHHHHHHHHhccCC---ccce-EEeccchHhhhcCCHHH-HHHHHHHHHHH--------------
Confidence 9999999998 789999999988876542 4455 67899999876655543 22232222211
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
++ --+.+.+.||+-..- ++.+++.+..+
T Consensus 156 -------------Ak-~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 156 -------------AK-VMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred -------------HH-HhCCcEEEeeccccccHHHHHHHHHHH
Confidence 00 113367778887765 88888766543
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=112.77 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDE 136 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~ 136 (268)
.-+++++|.|++|||||+++|++.+. .+..+.. ++..+++..+.++| ..++++|+||.-.-. .....
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s---eva~y~F-TTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS---EVADYPF-TTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc---cccccCc-eecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 46899999999999999999998764 2222221 22233455555566 799999999865322 22445
Q ss_pred hccCCCEEEEEEeCCCC
Q 024385 137 FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~ 153 (268)
..+.||++++|+|+...
T Consensus 137 v~R~ADlIiiVld~~~~ 153 (365)
T COG1163 137 VARNADLIIIVLDVFED 153 (365)
T ss_pred eeccCCEEEEEEecCCC
Confidence 67899999999999976
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=128.54 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=88.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--c---c--cceeecc-------ccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--Q---G--TVTSMEP-------NEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~---~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...++|+++|+.++|||||+++|+...-. . + ...+..+ +.............+..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999752100 0 0 0000000 0000000001112344578999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~l~~ 204 (268)
.+|.......++.+|++|+|+|+.++.. ......+..... .+.|+++|+||+|.... ...+++++.+..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~ 168 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLINELKLTPQELQERFIK 168 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccchhcCCHHHHHHHHhh
Confidence 9999888999999999999999988621 122222322222 56788999999998753 245556665554
Q ss_pred HHHHH
Q 024385 205 EIDKL 209 (268)
Q Consensus 205 ~l~~~ 209 (268)
.+..+
T Consensus 169 ~~~~v 173 (720)
T TIGR00490 169 IITEV 173 (720)
T ss_pred hhHHH
Confidence 44433
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=105.86 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=69.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.....|+++|++|+|||||++.+....- . . +.....+.+.... ..+ ..+.++||||.. .......+.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-~-~--~~~~~~g~i~i~~---~~~--~~i~~vDtPg~~---~~~l~~ak~a 104 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-K-Q--NISDIKGPITVVT---GKK--RRLTFIECPNDI---NAMIDIAKVA 104 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-c-C--ccccccccEEEEe---cCC--ceEEEEeCCchH---HHHHHHHHhc
Confidence 4567899999999999999999986421 1 1 1111122121111 122 578999999864 3334456889
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~nK~Dl~~ 191 (268)
|++++|+|++.+. ......+...+.. .+.|. ++|+||+|+..
T Consensus 105 DvVllviDa~~~~---~~~~~~i~~~l~~-----~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 105 DLVLLLIDASFGF---EMETFEFLNILQV-----HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred CEEEEEEecCcCC---CHHHHHHHHHHHH-----cCCCeEEEEEeccccCC
Confidence 9999999998762 2222233333332 45674 45999999874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-12 Score=106.55 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
....+|+++|.+|+||||++|+|++....... ...+ .+..........+| ..+.+|||||..+.... .
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs--~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS--AFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc--CCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 46789999999999999999999987642110 0111 11111111122344 68999999998864322 1
Q ss_pred hhhc--cCCCEEEEEEeCCC--CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHH
Q 024385 135 DEFL--PQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDK 208 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~ 208 (268)
..++ ...|+++||.+.+. ....-..+.+.+..+... .--.+++|++|+.|..+. .+.++....-...+++
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~----~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK----DIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLR 186 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh----hhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHH
Confidence 1222 25899999955443 211112333333333321 134579999999997743 3444444443444444
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=117.75 Aligned_cols=161 Identities=23% Similarity=0.218 Sum_probs=99.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccc--------------------cce--e-eccccceEEeecccccCCce
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG--------------------TVT--S-MEPNEDTFVLHSESTKKGKI 116 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~--------------------~~~--~-~~~~~~~~~~~~~~~~~~~~ 116 (268)
.....++++|+.++|||||+.+++..- .... .+. + .+...+.........+....
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 356789999999999999999985421 0000 000 0 00001111111112223334
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHH------HHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA------ASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
..++|+|+|||.+|.........++|+.++|+|++.. .|+. .......+++.- .-..++|++||+|+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~--~FE~gfd~~gQtrEha~llr~L----gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG--EFESGFDPGGQTREHALLLRSL----GISQLIVAINKMDLV 328 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcc--hhhhccCCCCchHHHHHHHHHc----CcceEEEEeeccccc
Confidence 6899999999999999999999999999999999875 1221 122222333321 345789999999998
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 191 TAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 191 ~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.=. .-+++...+...+.+. +...+.++.|+|||+.+|+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~--------------------------~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKES--------------------------CGFKESSVKFIPISGLSGE 368 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHh--------------------------cCcccCCcceEecccccCC
Confidence 632 3355555555444221 1112556789999999996
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=128.00 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=95.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc-----cc-c-e-----------eeccccceEEeecc--cccCCceeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-----GT-V-T-----------SMEPNEDTFVLHSE--STKKGKIKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-----~~-~-~-----------~~~~~~~~~~~~~~--~~~~~~~~~~~i 121 (268)
.+.++|+++|+.++|||||+++|+...-.. +. . . |+........+... ....++.+.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 456799999999999999999997632100 00 0 0 00000001111100 000122467999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFI 198 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~ 198 (268)
+|||||.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.- ..+.++.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 9999999999889999999999999999998732 223334444443 5789999999999973 3466777
Q ss_pred HHHHHHHHHHHHHhhh
Q 024385 199 RKQMEKEIDKLRASRS 214 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~ 214 (268)
...+.+.+++++....
T Consensus 169 ~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 169 YQNFVKTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778777777775443
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=111.68 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=63.0
Q ss_pred eEEEEeCCCCCCchhhHh------hhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 118 PVHLVDVPGHSRLRPKLD------EFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~------~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.++|||||.++...+. +.+. ..-++++++|+....+...-+...+..+.... +.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~---~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML---RLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH---HHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh---hCCCCEEEeeeccCc
Confidence 689999999987654433 2333 34478999999875232333444444433322 268999999999999
Q ss_pred CCCCCHHHHHHHHH--HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 190 VTAHTKEFIRKQME--KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 190 ~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.... .+...+.+. ..+..........-...+... ++.......|++.|+++++ +++|...+.+.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~-----------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL-----------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH-----------CCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-----------HhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8744 322222221 001100000000000000000 1111222379999999999 99999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=107.18 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=106.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC----cccccceeecccc------ceEEeec-ccccCCceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNE------DTFVLHS-ESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~----~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+...++.++|+.++|||||.++|..-. |.. ...+.+... ....... .....+...+++++|+|||...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk-~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDK-HPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhcc-CCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 345799999999999999999985422 111 111111111 1111111 1223566678999999999776
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
........+-.|..++|+|+..+.++...-.-.+.++ .....+||+||+|...+.......+.+.+.+..-
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--------~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt- 154 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT- 154 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--------hccceEEEEeccccccchhhhhHHHHHHHHHHHH-
Confidence 6666666667899999999998743222222222222 3456789999999987755433333333322221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC----C-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----E-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g----~-i~~l~~~l~~~~ 266 (268)
-.+ -...++.+++++||+.| + |.+|.+.|.+++
T Consensus 155 --Le~---------------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 155 --LES---------------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred --HHh---------------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 000 11156789999999999 5 999999888763
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=108.45 Aligned_cols=198 Identities=20% Similarity=0.224 Sum_probs=109.9
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccccee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGTVTS 96 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~~~~ 96 (268)
...+.|+++++....+...-. ...++..+.. ...+...|.+.|++|+|||||+..+... .... .+..
T Consensus 21 ~~a~a~~it~~e~~~~~~~~~--~~~l~~~~~~------~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v-~vi~ 91 (332)
T PRK09435 21 RAALARAITLVESTRPDHRAL--AQELLDALLP------HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKV-AVLA 91 (332)
T ss_pred HHHHHHHHHHHhCCCchhhHH--HHHHHHHHhh------cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEE
Confidence 567888888888777643111 0111111100 1356788999999999999999986321 1100 1111
Q ss_pred ecccc---------------------ceEEee--ccc--------------ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 97 MEPNE---------------------DTFVLH--SES--------------TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 97 ~~~~~---------------------~~~~~~--~~~--------------~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+|.. ..+... ... ..+...+.+.++||+|...-... ...
T Consensus 92 ~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~ 168 (332)
T PRK09435 92 VDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAG 168 (332)
T ss_pred eCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHH
Confidence 11110 001111 000 01112278899999998742222 466
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|.+++|.++..+ ..+..... .+++ ..-++|+||+|+............+...+....
T Consensus 169 ~aD~vlvv~~p~~g-d~iq~~k~---gi~E--------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~--------- 227 (332)
T PRK09435 169 MVDFFLLLQLPGAG-DELQGIKK---GIME--------LADLIVINKADGDNKTAARRAAAEYRSALRLLR--------- 227 (332)
T ss_pred hCCEEEEEecCCch-HHHHHHHh---hhhh--------hhheEEeehhcccchhHHHHHHHHHHHHHhccc---------
Confidence 79999999875554 33333222 1222 223899999999865544444444443333110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. .......+++.+||++|+ +++|.++|.++++
T Consensus 228 ----------~------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 228 ----------P------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ----------c------cccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 000112378999999999 9999999998753
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=109.34 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeecc--------------------------ccceEEeecccccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEP--------------------------NEDTFVLHSESTKK 113 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 113 (268)
+...+++.+|...-||||||.||+.+.-. +....+... +..+..+... .+.
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR-yFs 82 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR-YFS 82 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee-ecc
Confidence 45678999999999999999999766420 000000000 0000111111 112
Q ss_pred CceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 114 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
....++.+.|||||+.|...+......||++|+++|+..+ +.+.......+...- .-..+++++||+||.+-.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G---vl~QTrRHs~I~sLL----GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG---VLEQTRRHSFIASLL----GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh---hHHHhHHHHHHHHHh----CCcEEEEEEeeecccccC
Confidence 2225899999999999999998899999999999999887 333322222222210 345789999999998653
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=94.57 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=93.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----CCCchhhHhhhccC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----HSRLRPKLDEFLPQ 140 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----~~~~~~~~~~~~~~ 140 (268)
.+++++|..|||||||.+.|.+......... ...+ .++ ..+|||| |..+++.+......
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccc-------eeec------cCc----cccCCchhhhhhhHHHHHHHHHhhc
Confidence 5799999999999999999988653211111 1111 111 3689999 33444445556678
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|-.++++.+.|... +.. ....|+|-|++|.|+....+.+..++.+.+
T Consensus 65 advi~~v~~and~~s~f~p~---f~~--------~~~k~vIgvVTK~DLaed~dI~~~~~~L~e---------------- 117 (148)
T COG4917 65 ADVIIYVHAANDPESRFPPG---FLD--------IGVKKVIGVVTKADLAEDADISLVKRWLRE---------------- 117 (148)
T ss_pred cceeeeeecccCccccCCcc---ccc--------ccccceEEEEecccccchHhHHHHHHHHHH----------------
Confidence 99999999999984333322 111 156679999999999865555544444432
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
-+.-++|++||.+.+ +++|++.|...
T Consensus 118 -------------------aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 118 -------------------AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred -------------------cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 122379999999988 99999988754
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=108.57 Aligned_cols=192 Identities=17% Similarity=0.174 Sum_probs=105.1
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccccee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGTVTS 96 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~~~~ 96 (268)
.+.+.|+++.+....+.... ++..+. ........+.++|++|+|||||++.+... .... .+..
T Consensus 3 ~~~~~~~~~~~e~~~~~~~~------~~~~~~------~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v-~~i~ 69 (300)
T TIGR00750 3 RRALARAITLVENRHPEAKQ------LLDRIM------PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV-AVIA 69 (300)
T ss_pred HHHHHHHHHHHhCCChHHHH------HHHhCC------cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEe
Confidence 35678888888887765111 111111 11356788999999999999999997532 1100 0000
Q ss_pred ec-----------------------cccceEEeeccc--------------ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 97 ME-----------------------PNEDTFVLHSES--------------TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 97 ~~-----------------------~~~~~~~~~~~~--------------~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+ +.......+... ..+...+.+.|+||+|... .......
T Consensus 70 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~ 146 (300)
T TIGR00750 70 VDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIAN 146 (300)
T ss_pred cCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHH
Confidence 00 000000001000 0111237889999999653 2223566
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|.++++.+...+ .++......+ .++|.++|+||+|+............+...+..+...
T Consensus 147 ~aD~i~vv~~~~~~----~el~~~~~~l--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~------- 207 (300)
T TIGR00750 147 MADTFVVVTIPGTG----DDLQGIKAGL--------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRR------- 207 (300)
T ss_pred hhceEEEEecCCcc----HHHHHHHHHH--------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcccc-------
Confidence 78888888655443 3333333222 3567899999999976543222222222111111000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.. ....+++++||++|+ +++|.++|.++
T Consensus 208 ----------------~~--~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 208 ----------------ED--GWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ----------------cc--CCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 00 011258999999999 99999999875
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-13 Score=109.01 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=109.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc---cccc--ceeeccc-----------c---ceEEeecccccC----Cceee
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGT--VTSMEPN-----------E---DTFVLHSESTKK----GKIKP 118 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~--~~~~~~~-----------~---~~~~~~~~~~~~----~~~~~ 118 (268)
....+|.++|+...|||||..+|.+--. ..+. --++.-. . ..+......... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4678999999999999999999865311 0000 0001000 0 001111111111 11257
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
+.++|.|||+-....+.+-..-.|++++|++++++ -...+..+.|..+-.. .-..+++|-||+|+.......+-
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEp-cPQPQT~EHl~AleIi-----gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEP-CPQPQTREHLMALEII-----GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCC-CCCCchHHHHHHHhhh-----ccceEEEEecccceecHHHHHHH
Confidence 89999999998777777766778999999999987 3344555555444332 45678999999999875444333
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+++.+.++- ..-.+.+++++||..+- |+.|.++|.+++|.
T Consensus 162 y~qIk~FvkG-----------------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVKG-----------------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhcc-----------------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3333322221 11346699999999987 99999999999873
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=105.50 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=61.8
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+.+||++|+...+..|.+++..+++++||+|.++.. ..+.+....+..+..+... .++|+++++||.
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~--~~~pill~~NK~ 238 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF--ANTSIILFLNKK 238 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc--cCCCEEEEccCh
Confidence 67899999999999999999999999999999998741 3467777778888776543 689999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 239 D~f~ 242 (317)
T cd00066 239 DLFE 242 (317)
T ss_pred HHHH
Confidence 9753
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=102.99 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=73.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---h-----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---K----- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~----- 133 (268)
....+|+++|.+|+|||||+|.|++...... ....+.+... .......++ ..+.+|||||..+... .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--~~~~~~T~~~-~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT--SAFQSETLRV-REVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc--CCCCCceEEE-EEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 5788999999999999999999998764211 1111221111 111223344 5789999999876521 1
Q ss_pred --Hhhhcc--CCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 134 --LDEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 134 --~~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
...|+. ..|+++||...+....... .+.+.+.+.... ..-.++++|.||+|.....
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~----~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP----SIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh----hhHhCEEEEEeCCccCCCC
Confidence 223443 5788888875554311111 233333333221 1235799999999997654
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=104.45 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=61.9
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.+||.+|+...+..|..++..++++|||+|+++.. ..+.+....+..+...... .++|+++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~--~~~piil~~NK~ 261 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF--ANTSIILFLNKI 261 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc--cCCcEEEEEecH
Confidence 56899999999999999999999999999999999741 3477777888888876543 789999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 262 D~~~ 265 (342)
T smart00275 262 DLFE 265 (342)
T ss_pred HhHH
Confidence 9863
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=109.49 Aligned_cols=143 Identities=23% Similarity=0.318 Sum_probs=94.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-------------------eeccccceEEeecccccCCceeeEEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------------------SMEPNEDTFVLHSESTKKGKIKPVHLV 122 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 122 (268)
...++|.++|+-.+|||+|+..|..+.-++.... ++..+..+... -...++.+-++++
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l---~D~~~KS~l~nil 202 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVL---SDSKGKSYLMNIL 202 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEE---ecCcCceeeeeee
Confidence 4567899999999999999999976643222110 11111111111 1235666889999
Q ss_pred eCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHH
Q 024385 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIR 199 (268)
Q Consensus 123 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~ 199 (268)
|||||.+|.......++.+|++++|+|+.++ - .-.....+....+ .+.|+++|+||+|+.- ..++....
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG-V-mlntEr~ikhaiq------~~~~i~vviNKiDRLilELkLPP~DAY 274 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEG-V-MLNTERIIKHAIQ------NRLPIVVVINKVDRLILELKLPPMDAY 274 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccC-c-eeeHHHHHHHHHh------ccCcEEEEEehhHHHHHHhcCChHHHH
Confidence 9999999999999999999999999999997 2 2233333444443 7899999999999742 23344444
Q ss_pred HHHHHHHHHHHHhhhc
Q 024385 200 KQMEKEIDKLRASRSA 215 (268)
Q Consensus 200 ~~l~~~l~~~~~~~~~ 215 (268)
-.+.-.+..++...+.
T Consensus 275 ~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 275 YKLRHIIDEINNLIST 290 (971)
T ss_pred HHHHHHHHHhcchhhh
Confidence 4444445544433333
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=115.54 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=84.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cc-cc------ceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ-GT------VTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~-~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|.++|+.++|||||..+++...- .. +. .... ....+...-...+.+.+ .+.++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 4678999999999999999999863211 10 00 0000 00111111112233443 378999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
.+|.....+.++-+|++++|+|+.++. ..+....+.+... .++|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV--~~QTEtv~rqa~~------~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGV--EPQTETVWRQADK------YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCe--eecHHHHHHHHhh------cCCCeEEEEECccccccC
Confidence 999999999999999999999999982 2233344444443 789999999999997654
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=102.68 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=60.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceee-ccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSM-EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
....+|+|+|.+|+|||||||.|.+-.- .....+.. +.+.....+.. ... -.+.+||.||..........|+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~----p~~-pnv~lWDlPG~gt~~f~~~~Yl 107 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH----PKF-PNVTLWDLPGIGTPNFPPEEYL 107 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-----SS--TTEEEEEE--GGGSS--HHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC----CCC-CCCeEEeCCCCCCCCCCHHHHH
Confidence 4678999999999999999999975321 11111111 11122222221 111 2689999999765544455554
Q ss_pred -----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 139 -----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 139 -----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
...|.+|++.+ .. +....-++...+.. .++|+.+|-+|+|.
T Consensus 108 ~~~~~~~yD~fiii~s-~r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 108 KEVKFYRYDFFIIISS-ER----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp HHTTGGG-SEEEEEES-SS------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred HHccccccCEEEEEeC-CC----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 45787766543 33 45555555555543 78999999999996
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=100.30 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=105.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC---C----ccc-ccce--eec--cccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG---S----THQ-GTVT--SME--PNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~---~----~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|..+|+.+.|||||...++.- . +.. ..+. ..+ ..++..+-+.++...+ ..+..+|+|||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChH
Confidence 356789999999999999999887431 1 000 0000 000 0111111222222233 577899999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|-..+.....+.|+.|+|+.++++. +.+..+.+.-..+ -++| +++++||+|+.+.. ++.+..+-++.
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~---ellelVemEvr 155 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYIVVFLNKVDMVDDE---ELLELVEMEVR 155 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh------cCCcEEEEEEecccccCcH---HHHHHHHHHHH
Confidence 99888888888899999999999972 4444444432222 4664 67889999998743 23333333333
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeecc---C-----C-chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT---G-----E-ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~---g-----~-i~~l~~~l~~~~~p 268 (268)
++-..+ +| -..+.+++..||+. | + |.+|++++.+++|+
T Consensus 156 eLLs~y-------------------~f----~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 156 ELLSEY-------------------GF----PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHc-------------------CC----CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 331111 11 12456778788763 2 1 78999999998875
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-12 Score=98.18 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-----hhHhhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-----PKLDEF 137 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-----~~~~~~ 137 (268)
...||+++|.+|+||||+=..+..+.. ...+..++.+....+..+.+.|. .-+.+||.+|++.+. ...+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~i 78 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNI 78 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhh
Confidence 456899999999999998766654432 11122233333444555555554 478999999998543 234567
Q ss_pred ccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 138 LPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++..+++++|+|++..+ ..+.....-+..++++. +...+.+..+|+|+...+..+.+-+.....+..+
T Consensus 79 F~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S----P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~ 148 (295)
T KOG3886|consen 79 FRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS----PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL 148 (295)
T ss_pred heeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC----CcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence 78899999999998751 12333344445555543 8889999999999998887777766666655554
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=104.42 Aligned_cols=156 Identities=22% Similarity=0.199 Sum_probs=101.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+..|+-..|||||+..+++..-.. ..-..++...+.+.. ...+ ..+.++|.|||+++-..+-..+...|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~----~~~d--~~~~fIDvpgh~~~i~~miag~~~~d 75 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR----KLED--GVMGFIDVPGHPDFISNLLAGLGGID 75 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec----cCCC--CceEEeeCCCcHHHHHHHHhhhcCCc
Confidence 47889999999999999998764311 011111111111111 1122 48899999999999999989999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
.+++|+|++++ +.........++..- .-...++|+||+|+.+....++. +.+.++.. +
T Consensus 76 ~alLvV~~deG---l~~qtgEhL~iLdll----gi~~giivltk~D~~d~~r~e~~---i~~Il~~l----~-------- 133 (447)
T COG3276 76 YALLVVAADEG---LMAQTGEHLLILDLL----GIKNGIIVLTKADRVDEARIEQK---IKQILADL----S-------- 133 (447)
T ss_pred eEEEEEeCccC---cchhhHHHHHHHHhc----CCCceEEEEeccccccHHHHHHH---HHHHHhhc----c--------
Confidence 99999999876 222222223333321 34456999999999865433222 22222221 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++.+|+++|+ |++|.+.|.+..
T Consensus 134 -----------------l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -----------------LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -----------------cccccccccccccCCCHHHHHHHHHHhh
Confidence 234577999999999 999999988765
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=97.54 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=77.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------Hhh--
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------LDE-- 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~~-- 136 (268)
+|+++|.+|+||||++|.+++........... +.+..... .....+| ..+.++||||..+.... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~-~~t~~~~~-~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAK-SVTQECQK-YSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTS-S--SS-EE-EEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccC-Ccccccce-eeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 79999999999999999999887533221111 11111111 1124455 68999999996543211 111
Q ss_pred --hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH-HHHHHHHHH
Q 024385 137 --FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK-QMEKEIDKL 209 (268)
Q Consensus 137 --~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~l~~~l~~~ 209 (268)
...+.++++||+........-....+++..+.... .-..++||.+..|.......++..+ .-...++.+
T Consensus 78 ~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~----~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE----IWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL 149 (212)
T ss_dssp HHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG----GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH----HHhHhhHHhhhccccccccHHHHHhccCchhHhHH
Confidence 23568999999999865223444555555555432 2346899999999877666444333 222334544
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=102.76 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=58.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc------ccCC---ceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES------TKKG---KIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~i~DtpG~~~~ 130 (268)
....+|+++|.||||||||+|+|++...... ..+|..|..+....+... .... ...++.++||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4667999999999999999999987654221 233445555544433110 0000 0135899999996532
Q ss_pred h-------hhHhhhccCCCEEEEEEeCC
Q 024385 131 R-------PKLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 131 ~-------~~~~~~~~~~d~ii~v~d~~ 151 (268)
. ......++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12344678899999999985
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=99.26 Aligned_cols=138 Identities=16% Similarity=0.269 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccc------eeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTV------TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---- 133 (268)
.++|+++|.+|+|||||+|.|.+........ .....+.........+.-++..+.++++||||..+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 4689999999999999999999876532210 011111111222233444566789999999996542111
Q ss_pred ----------Hhhhc-------------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 134 ----------LDEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 134 ----------~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
...|+ ...|+++|+++++.. .+...+-....-+. ..+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~--~L~~~Di~~mk~Ls------~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH--GLKPLDIEFMKRLS------KRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS--SS-HHHHHHHHHHT------TTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc--cchHHHHHHHHHhc------ccccEEeEEeccccc
Confidence 11111 236899999999874 34444333333332 678899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 024385 191 TAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~ 209 (268)
........++.+...++..
T Consensus 156 t~~el~~~k~~i~~~l~~~ 174 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEEN 174 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 7666666666666666543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-11 Score=94.22 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=62.0
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE--EEEeecCCCCCC--
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV--LICCNKTDKVTA-- 192 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi--ivv~nK~Dl~~~-- 192 (268)
....++++.|..-.... ... -+|.+|.|+|+.+. .... .... ..+.. ++++||+|+.+.
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~--l~~~~i~vvD~~~~-~~~~---~~~~----------~qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPE--LADLTIFVIDVAAG-DKIP---RKGG----------PGITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CCEEEEECCCCCccccc-chh--hhCcEEEEEEcchh-hhhh---hhhH----------hHhhhccEEEEEhhhcccccc
Confidence 45678888884221111 122 26789999999987 3221 1111 22333 899999999853
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+. +.+.+..+ ....+++++||++|+ ++++++||.++..
T Consensus 155 ~~~~~----~~~~~~~~------------------------------~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGV----MERDAKKM------------------------------RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHH----HHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 22222 22323321 224689999999999 9999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=93.85 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=86.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce--------eecc----cc--ceEEeecc-------------c-cc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT--------SMEP----NE--DTFVLHSE-------------S-TK 112 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~--------~~~~----~~--~~~~~~~~-------------~-~~ 112 (268)
....+.++++|+.|+|||||++++........... .... .. ........ + ..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 35678899999999999999999865311000000 0000 00 00000000 0 00
Q ss_pred CCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 113 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 113 ~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
......+.+++|.|..... ..+....+..+.|+|+.+. .. ..... ... ...|.++++||+|+...
T Consensus 99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~-d~--~~~~~-~~~--------~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEG-DD--KPLKY-PGM--------FKEADLIVINKADLAEA 163 (207)
T ss_pred ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcc-cc--hhhhh-HhH--------HhhCCEEEEEHHHcccc
Confidence 0012467788888831111 1122234566778888875 21 11111 111 34678999999999753
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... .. ..+.+.++++ ....+++++||++|+ ++++++|+.++.+
T Consensus 164 ~~~-~~-~~~~~~l~~~------------------------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 164 VGF-DV-EKMKADAKKI------------------------------NPEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred chh-hH-HHHHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 221 11 1122222221 123579999999999 9999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=92.08 Aligned_cols=64 Identities=31% Similarity=0.487 Sum_probs=44.8
Q ss_pred eeEEEEeCCCCCCc----hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRL----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.|+||||.... ...+..|+..+|++|+|.+++.. -. ......+...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~-~~-~~~~~~l~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD-LT-ESDMEFLKQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST-GG-GHHHHHHHHHHTT-----TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc-cc-hHHHHHHHHHhcC-----CCCeEEEEEcCC
Confidence 46899999997532 35577889999999999999996 22 2344445555543 344599999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=94.00 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=64.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.|+.|.|...-. -....-+|.+++|+-+..+ +.++.++.-+.++- =++|+||.|+... +
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~G-D~iQ~~KaGimEia-----------Di~vVNKaD~~gA---~ 183 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLG-DEIQAIKAGIMEIA-----------DIFVVNKADRPGA---D 183 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTC-CCCCTB-TTHHHH------------SEEEEE--SHHHH---H
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCc-cHHHHHhhhhhhhc-----------cEEEEeCCChHHH---H
Confidence 678888998864322 2334668999999999887 66666666665553 3899999995332 2
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....+...+... .. ... .-..+++.+||.+|+ |++|.+.|.++
T Consensus 184 ~~~~~l~~~l~l~---~~----------~~~------------~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 184 RTVRDLRSMLHLL---RE----------RED------------GWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHHHHHHC---ST----------SCT------------SB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---cc----------ccc------------CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 2333333322210 00 000 112489999999999 99999999876
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-10 Score=91.26 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=116.1
Q ss_pred HhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-
Q 024385 14 EQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG- 92 (268)
Q Consensus 14 ~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~- 92 (268)
+.-..--.+.+.|+++++....+...-.+ .-++..+ .....+...|.|.|.||+|||||+..|...-...+
T Consensus 9 e~l~~GdrrAlARaITlvEs~~~~h~~~a--~~ll~~l------~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 9 ERLLAGDRRALARAITLVESRRPDHRALA--RELLRAL------YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCchhhhHH--HHHHHHH------hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 33333336778889898888777743331 1112211 11235678999999999999999998743211111
Q ss_pred --cceeeccc----cce-----------------EEee--cc--------------cccCCceeeEEEEeCCCCCCchhh
Q 024385 93 --TVTSMEPN----EDT-----------------FVLH--SE--------------STKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 93 --~~~~~~~~----~~~-----------------~~~~--~~--------------~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
.+-.++|. .+. |..+ +. ...+.-.+.+.|+.|.|.....
T Consensus 81 rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-- 158 (323)
T COG1703 81 RVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-- 158 (323)
T ss_pred EEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch--
Confidence 11112221 000 1000 00 0111122678889998864322
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
-.....+|.+++|.=+.-+ +.++.++.-+.++- =++|+||.|.... +.....+...++.....
T Consensus 159 -v~I~~~aDt~~~v~~pg~G-D~~Q~iK~GimEia-----------Di~vINKaD~~~A---~~a~r~l~~al~~~~~~- 221 (323)
T COG1703 159 -VDIANMADTFLVVMIPGAG-DDLQGIKAGIMEIA-----------DIIVINKADRKGA---EKAARELRSALDLLREV- 221 (323)
T ss_pred -hHHhhhcceEEEEecCCCC-cHHHHHHhhhhhhh-----------heeeEeccChhhH---HHHHHHHHHHHHhhccc-
Confidence 2334568999999888777 55666666665443 3899999995432 23333333333322100
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+....-.-+++.+||.+|+ +++|.+.|.++.
T Consensus 222 ----------------------~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 222 ----------------------WRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ----------------------ccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 1111223489999999999 999999998764
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-10 Score=95.24 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccc------cCC---ceeeEEEEeCCCCCCch--
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST------KKG---KIKPVHLVDVPGHSRLR-- 131 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~i~DtpG~~~~~-- 131 (268)
.+|+++|.||||||||+|+|++...... ..+|..|..+...++.... ... ....+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 5899999999999999999998763221 2345556555554443100 000 01258999999965421
Q ss_pred -----hhHhhhccCCCEEEEEEeCC
Q 024385 132 -----PKLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 132 -----~~~~~~~~~~d~ii~v~d~~ 151 (268)
......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12334578999999999995
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=96.35 Aligned_cols=172 Identities=20% Similarity=0.173 Sum_probs=106.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC-------Ccccccceeecc-----ccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG-------STHQGTVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+++..+|.-+|+.+.|||||...++.- ++.....-.-.| .++....+ +.+........-.|+|||.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aH--veYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAH--VEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeee--eeeeccccccccCCCCchH
Confidence 466789999999999999998887421 110000000000 11111111 1112222456678999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|......-..+-|+.|+|+.++++ .+.+.++.+.-..+- .-..+++++||.|+.++... .+..+-++.+
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG--~MPQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~---leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDG--PMPQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEM---LELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCC--CCcchHHHHHHHHHc-----CCceEEEEEecccccCCHHH---HHHHHHHHHH
Confidence 9998888888899999999999997 366666666544432 23468899999999854332 2333333332
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeec---cC-------C-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL---TG-------E-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~---~g-------~-i~~l~~~l~~~~~ 267 (268)
+-.. |..-..+.+++..||+ .| + |.+|++.+..++|
T Consensus 199 lLse-----------------------~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 199 LLSE-----------------------FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHHH-----------------------cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 2111 2222456788888876 33 2 7788888888765
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-10 Score=92.97 Aligned_cols=142 Identities=17% Similarity=0.299 Sum_probs=95.3
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCccccc------ceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT------VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-- 131 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-- 131 (268)
+..-.++|+++|++|.|||||+|.|++....... .....++.........+.-+|....++++||||..++.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 3456789999999999999999999887442221 01122333333344445556777899999999976532
Q ss_pred ------------hhHhhhcc--------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee
Q 024385 132 ------------PKLDEFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 185 (268)
Q Consensus 132 ------------~~~~~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n 185 (268)
.+.+.|+. ..++++|.+-++.. .+..+.-....-+. ..+.+|-|+-
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh--~l~~~DIe~Mk~ls------~~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH--GLKPLDIEAMKRLS------KRVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC--CCCHHHHHHHHHHh------cccCeeeeee
Confidence 12223331 36899999998875 45555443333332 5778899999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 186 KTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 186 K~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
|+|..........++.+.+.+...
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~ 194 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQY 194 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Confidence 999988777777777777766654
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=100.75 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=120.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cce--e--eccccceEEe-ecccccCCceeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVT--S--MEPNEDTFVL-HSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
...++++++.+.+.|||||...|...+-.-. .+. . .+.++...+. ...+...-+.+.++++|+|||.+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3567899999999999999999875432000 000 0 0001111111 1222232233789999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~~~l~~~l~~ 208 (268)
+......+-+|++++.+|+.++. ..+....+.+... .+...++|+||+|..- ...+.+....+.+.+++
T Consensus 87 sevssas~l~d~alvlvdvvegv--~~qt~~vlrq~~~------~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGV--CSQTYAVLRQAWI------EGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred hhhhhhhhhcCCcEEEEeecccc--chhHHHHHHHHHH------ccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999973 3334444444433 6778899999999532 24667777778777777
Q ss_pred HHHhhhcccccc---ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC---chhHHHHHHhh
Q 024385 209 LRASRSAVSEAD---VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE---ISQVEQFIREQ 265 (268)
Q Consensus 209 ~~~~~~~~~~~~---~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~---i~~l~~~l~~~ 265 (268)
++...+..-+.- .++..+.. ..+..|++-.+| ++.+||..|. +++.-++-.+.
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~--d~~~~F~p~kgN--Vif~~A~~~~~f~~~~fak~~~~k 217 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIE--DEEITFGPEDGN--VIFASALDGWGFGIEQFAKFYAKK 217 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhh--hcceeecCCCCc--EEEEEecccccccHHHHHHHHHHh
Confidence 766655432210 01111111 334556665665 5568999886 55555554443
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=95.56 Aligned_cols=189 Identities=19% Similarity=0.169 Sum_probs=113.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee----------------ccccceEEeecc--c-------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM----------------EPNEDTFVLHSE--S------------- 110 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~------------- 110 (268)
+....+...|+.++|||||+..|+.+...++.-.+- ......+-+... +
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 345678999999999999999997766533221100 000000111000 0
Q ss_pred ccCCceeeEEEEeCCCCCCchhhHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 111 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.......-+.++||.||+.|-....+-+ ++.|-.++++.++++. ....++.+--.+. ...|++++++|+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 0011113578999999999866654443 6789999999999982 2333444444433 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc-CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT-NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+......+.+.+...+.........+...+.. ......+. -..-+|++.+||.||+ ++-|.+++ .++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~--------~~~vvPi~~tSsVTg~GldlL~e~f-~~L 337 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKA--------GRGVVPIFYTSSVTGEGLDLLDEFF-LLL 337 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhc--------CCceEEEEEEecccCccHHHHHHHH-HhC
Confidence 9988777777777776666543333333222211 11111111 1335899999999999 66554443 344
Q ss_pred C
Q 024385 267 K 267 (268)
Q Consensus 267 ~ 267 (268)
|
T Consensus 338 p 338 (527)
T COG5258 338 P 338 (527)
T ss_pred C
Confidence 3
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-10 Score=94.72 Aligned_cols=142 Identities=15% Similarity=0.264 Sum_probs=93.9
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--- 131 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--- 131 (268)
++.-.++++++|++|.|||||+|.|+...+... .......+.........+.-+|...+++++||||..+..
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 345578999999999999999999987754322 111111122223334445667777899999999976432
Q ss_pred -----------hhHhhhcc-------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 132 -----------PKLDEFLP-------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 132 -----------~~~~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+..+.|+. ..++++|.+.++.. .+..+.-.+..-+. ..+.+|-|+-|+
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAKA 168 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeecc
Confidence 22333331 47899999999874 35555444433332 678899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
|..........++.+.+.+...
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~ 190 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEH 190 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc
Confidence 9987766666666666666643
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=92.90 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=72.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccc--------ceeeccc---cceEEe--e---cccc-cCCceeeEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGT--------VTSMEPN---EDTFVL--H---SEST-KKGKIKPVH 120 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~--------~~~~~~~---~~~~~~--~---~~~~-~~~~~~~~~ 120 (268)
.....|.++|+.++|||||+|+|.+. +....+ .++..++ +++.+. + .++. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 56788999999999999999999887 332000 2222222 111110 0 0111 233345899
Q ss_pred EEeCCCCCCchhh-----------------------------Hhhhcc-CCCEEEEEE-eCC----CCCCCHHHHHHHHH
Q 024385 121 LVDVPGHSRLRPK-----------------------------LDEFLP-QAAGIVFVV-DAL----EFLPNCSAASEYLY 165 (268)
Q Consensus 121 i~DtpG~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~----~~~~~~~~~~~~l~ 165 (268)
++||+|...-... ....++ .++..|+|. |.+ ........-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999996532111 233445 789888888 775 11012333344444
Q ss_pred HHHhcCCccCCCCcEEEEeecCCCC
Q 024385 166 DILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 166 ~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.+.. .++|+++++||+|-.
T Consensus 175 eLk~------~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKE------LNKPFIILLNSTHPY 193 (492)
T ss_pred HHHh------cCCCEEEEEECcCCC
Confidence 4443 799999999999943
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=97.83 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc------------------ceeeccccceEEeecc-c----------ccCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVLHSE-S----------TKKG 114 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~----------~~~~ 114 (268)
+.+++++|..++|||||+.-|+.+....+. ..++...+-.+..... + ..+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 578999999999999999988766542211 1111111100100000 0 0111
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccC--CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
....++++|.+||.+|.......+.. .|..++|+++..+.. ....+.+.-+.. -++|+.++++|+|+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeeccccc
Confidence 12468999999999987776655543 578899999988732 122333333332 68999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+...+.+...+.+........-...-++....+.. ....+.++++.+|+.+|+ ++-+. .+..+++|
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~------~~s~nivPif~vSsVsGegl~ll~-~fLn~Lsp 388 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQE------LCSGNIVPIFAVSSVSGEGLRLLR-TFLNCLSP 388 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHH------hccCCceeEEEEeecCccchhHHH-HHHhhcCC
Confidence 88887777777777665444333211111111111110 112567899999999999 66444 45555554
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=88.36 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.4
Q ss_pred eeEEEEeCCCCCCc-------------hhhHhhhccC-CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEE
Q 024385 117 KPVHLVDVPGHSRL-------------RPKLDEFLPQ-AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piiv 182 (268)
..++++||||.... ..+...|++. .+.+++|+|+...... .........+ . +.+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~-~d~l~ia~~l-d-----~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLAN-SDALKLAKEV-D-----PQGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCc-hhHHHHHHHH-H-----HcCCcEEE
Confidence 47899999997531 1235567774 5689999998765222 1112222222 2 26789999
Q ss_pred EeecCCCCCCC
Q 024385 183 CCNKTDKVTAH 193 (268)
Q Consensus 183 v~nK~Dl~~~~ 193 (268)
|+||+|.....
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998643
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=90.34 Aligned_cols=90 Identities=26% Similarity=0.366 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeeccc----c--cC----CceeeEEEEeCCCCCC--
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSES----T--KK----GKIKPVHLVDVPGHSR-- 129 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~----~~~~~~~i~DtpG~~~-- 129 (268)
..++.|+|.||+|||||+|.++..... .....|++|+.+...++... . .. -....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999987642 12467899988876654320 0 11 1125789999999653
Q ss_pred -----chhhHhhhccCCCEEEEEEeCCCC
Q 024385 130 -----LRPKLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 130 -----~~~~~~~~~~~~d~ii~v~d~~~~ 153 (268)
........++.+|+++.|+|+.+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 234466778999999999999853
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=86.74 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=96.4
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 54 ~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+..+..-.++|++||.+|.|||||+|.+........... .+..++..-.....+.-+|...+++++||||..
T Consensus 36 m~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 36 MRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred HHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 334445556789999999999999999999876654332111 111111111222334456666789999999976
Q ss_pred Cch--------------hhHhhhcc--------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE
Q 024385 129 RLR--------------PKLDEFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 180 (268)
Q Consensus 129 ~~~--------------~~~~~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi 180 (268)
+.. .+...|++ ..++++|.+.++.. ++..++-.+..-+. .-+.+
T Consensus 116 DqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh--sLrplDieflkrLt------~vvNv 187 (336)
T KOG1547|consen 116 DQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH--SLRPLDIEFLKRLT------EVVNV 187 (336)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC--ccCcccHHHHHHHh------hhhee
Confidence 532 12223332 36799999999885 45555433333222 34567
Q ss_pred EEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 181 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+-|+-|.|...-....+.++.+.+++.......+.
T Consensus 188 vPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 188 VPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred eeeEeecccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 88899999887777777778877777765444333
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=92.77 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+++....+.+++++|++++|+|+.++..++..+..|+..+.. .++|+++|+||+||....... .+.+ +
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~--~~~~----~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME--KEQL----D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH--HHHH----H
Confidence 566777778999999999999999874589999998875543 689999999999996432211 1111 1
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. |. ..+++++++||++|+ ++++++.+.+
T Consensus 92 ~---------------------------~~--~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 92 I---------------------------YR--NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H---------------------------HH--HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 1 11 123579999999998 9999988765
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=90.25 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+.......+.++|.+|+|||||++++.+.
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445577889999999999999999887654
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-09 Score=88.75 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|.+||..-+..|.+.+.+++++|||++.++.. +.+.+....+..+..+... .+.++|+++||.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F--~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF--ANTSIILFLNKK 272 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc--ccCcEEEEeecH
Confidence 67899999999988999999999999999999998642 2345556667777776554 789999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
||..
T Consensus 273 DLFe 276 (354)
T KOG0082|consen 273 DLFE 276 (354)
T ss_pred HHHH
Confidence 9964
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-10 Score=90.95 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=96.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--hh----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--PK---- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--~~---- 133 (268)
.....|.++|.+|||||||+++|+...... .-+.|.+|+...-..+ .| ..+.+.||-|...-- .+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-----sg--~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-----SG--NFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-----CC--cEEEEeechhhhhhCcHHHHHHH
Confidence 446789999999999999999999654411 1245555554333332 33 367889999954211 11
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc----EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP----VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
.-.....+|.++-|+|++.+ . .+....-....+..... +..| ++=|-||+|.......+
T Consensus 249 ~ATLeeVaeadlllHvvDiShP-~-ae~q~e~Vl~vL~~igv--~~~pkl~~mieVdnkiD~e~~~~e~----------- 313 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHP-N-AEEQRETVLHVLNQIGV--PSEPKLQNMIEVDNKIDYEEDEVEE----------- 313 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCc-c-HHHHHHHHHHHHHhcCC--CcHHHHhHHHhhccccccccccCcc-----------
Confidence 12344679999999999997 3 55555555555555332 2233 45577788876542211
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+ -.+.+||++|+ ++++.+.+...+
T Consensus 314 --------------------------------E~n-~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 --------------------------------EKN-LDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred --------------------------------ccC-CccccccccCccHHHHHHHHHHHh
Confidence 111 15678999999 999999887654
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=84.03 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=51.5
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
.-|+|+|++++++.-....-.+ .. .=++|+||.|+.+.-..+ .+.+.+...++
T Consensus 120 ~~v~VidvteGe~~P~K~gP~i-----------~~-aDllVInK~DLa~~v~~d--levm~~da~~~------------- 172 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGGPGI-----------FK-ADLLVINKTDLAPYVGAD--LEVMARDAKEV------------- 172 (202)
T ss_pred eEEEEEECCCCCCCcccCCCce-----------eE-eeEEEEehHHhHHHhCcc--HHHHHHHHHHh-------------
Confidence 7899999999833211100000 11 347899999998654331 22333333332
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++.+|++||+ +++|.+|+....
T Consensus 173 -----------------np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 173 -----------------NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred -----------------CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 456789999999999 999999998765
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=92.73 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh------h----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------K---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~---- 133 (268)
..+|+++|.+|+||||++|.|++..... .....+.++.. .......+| ..+.++||||..+... .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~--vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFS--TDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccc--ccCCCCCceEE-EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 4689999999999999999999876321 11222222222 111122344 5799999999876421 1
Q ss_pred Hhhhcc--CCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 134 LDEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 134 ~~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
...++. .+|++|||..........+ .+.+.+..+.-. .--..+|||.|+.|..+.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~----~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP----SIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH----HhHcCEEEEEeCCccCCC
Confidence 222443 4799999987764311112 223333333321 133568999999998863
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=79.54 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---HhhhccC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---LDEFLPQ 140 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~ 140 (268)
.++|++.|...|||||+-+-..++-.+..+. -.+.+.. . . .-++.+.-+.+.+||.||+.++-.. ....+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl-flESTsk-i--~-~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTSK-I--T-RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCcee-EeeccCc-c--c-HhhhhhhhcceEEeecCCccccCCCccCHHHHHhc
Confidence 3679999999999999877655543221111 0000000 0 0 0011112257899999999876433 4566889
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+.++|||+|+.+. +.+....+......+....+++.+=+++.|+|-....-.
T Consensus 102 ~gALifvIDaQdd---y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 102 VGALIFVIDAQDD---YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred cCeEEEEEechHH---HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 9999999999985 444444455555544445588999999999998765533
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=88.84 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=55.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc------ccCCc---eeeEEEEeCCCCCCchh---
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES------TKKGK---IKPVHLVDVPGHSRLRP--- 132 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~i~DtpG~~~~~~--- 132 (268)
++++|.||||||||+|+|++.+.... ..+|+.|..+...++... .+++. ...+.++|+||..+-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998775221 234555655555443310 00110 12589999999654221
Q ss_pred ----hHhhhccCCCEEEEEEeCC
Q 024385 133 ----KLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 133 ----~~~~~~~~~d~ii~v~d~~ 151 (268)
.....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2334567899999999985
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=85.91 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeec----ccccCCce----------------------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHS----ESTKKGKI---------------------- 116 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------- 116 (268)
..+-|+++|.-..||||+++.|+.+.++.. ....+|++..+..-. +-.+.|..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~-riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGL-RIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCcc-ccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 467799999999999999999999988532 222333333332210 00111110
Q ss_pred -----------eeEEEEeCCCCCC-----------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc
Q 024385 117 -----------KPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174 (268)
Q Consensus 117 -----------~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (268)
-.++|+||||.-. |....+.+..+||.|+++||+... +--.+....+..+..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKL-DIsdEf~~vi~aLkG----- 209 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFKRVIDALKG----- 209 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhc-cccHHHHHHHHHhhC-----
Confidence 3689999999653 344466788999999999999875 323334444444433
Q ss_pred CCCCcEEEEeecCCCCCCCC
Q 024385 175 KKKIPVLICCNKTDKVTAHT 194 (268)
Q Consensus 175 ~~~~piivv~nK~Dl~~~~~ 194 (268)
..-.+-||+||.|.+....
T Consensus 210 -~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 -HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred -CcceeEEEeccccccCHHH
Confidence 4557889999999986533
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-09 Score=80.45 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++....+.++++|++++|+|++++..... ..+...... .+.|+++|+||+|+... +... ... .+..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~~-----~~~p~iiv~NK~Dl~~~---~~~~-~~~-~~~~- 67 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS---RKLERYVLE-----LGKKLLIVLNKADLVPK---EVLE-KWK-SIKE- 67 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHHh-----CCCcEEEEEEhHHhCCH---HHHH-HHH-HHHH-
Confidence 35567778888999999999987522111 122222221 57899999999998632 1111 111 0100
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++|++.|.+.+
T Consensus 68 ------------------------------~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 68 ------------------------------SEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred ------------------------------hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 112368999999998 999999998765
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-09 Score=87.80 Aligned_cols=185 Identities=16% Similarity=0.222 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc------------------ceeeccccceEEeeccc-----------cc--
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVLHSES-----------TK-- 112 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~-----------~~-- 112 (268)
+.+|+++|..++|||||+.-|+++....+. ..++.-.+-.|.....+ .|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 578999999999999999888766542111 11111111001111000 00
Q ss_pred --CCceeeEEEEeCCCCCCchhhHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 113 --KGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 113 --~~~~~~~~i~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.+...-++++|.+||++|-......+ ...|..++++-++.+. +....+.+.-.+. -.+|+.+|++|+|
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALa------L~VPVfvVVTKID 284 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALA------LHVPVFVVVTKID 284 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhhhhh------hcCcEEEEEEeec
Confidence 01113578999999998865543333 4468889999888762 3333444444443 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
++++...++-.+.+.+.+....+..-.+-....++..... .. |.. ..-+++|.+|-.+|+ ++-|..+|
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A---~N--F~S-er~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA---VN--FPS-ERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee---cc--Ccc-ccccceEEeccccCCChHHHHHHH
Confidence 9987666555555554444322222222221212211111 11 221 455899999999998 66555444
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=78.42 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeecccc--ceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNE--DTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
+...+|+++|+.++|||||+.+|-+.+- ..+.. +-...+..-...+...++.+|-.-|......++...+.
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~-------~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET-------VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc-------cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 4678999999999999999999987542 11111 11111211112222346777777786655555555554
Q ss_pred CC---C-EEEEEEeCCCCCCCHHHHHHH
Q 024385 140 QA---A-GIVFVVDALEFLPNCSAASEY 163 (268)
Q Consensus 140 ~~---d-~ii~v~d~~~~~~~~~~~~~~ 163 (268)
.. + .+|+++|.+++-.-++.+..|
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkW 150 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKW 150 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHH
Confidence 33 3 578889998872223444444
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=74.69 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=62.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+|++++|..|+|||+|+.++....+..... + ++.+ +......+.+.++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~---------------------------~~~~~~~~~~s~~~~ 50 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG---------------------------IDVYDPTSYESFDVV 50 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh---------------------------hhhccccccCCCCEE
Confidence 489999999999999999997776632111 0 1111 222334566778999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.|++.... +++... |...+.... +.+.|.++++||.|+..
T Consensus 51 ~~v~~~~~~-~s~~~~--~~~~i~~~~---k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 51 LQCWRVDDR-DSADNK--NVPEVLVGN---KSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEEEEccCH-HHHHHH--hHHHHHhcC---CCCCcEEEEeechhhHh
Confidence 999999986 556544 655555432 26789999999999843
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-09 Score=84.98 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------Cch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------RLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~~~ 131 (268)
.+.+.++++|.+|+|||||+|.++..+.......+ .++-+.. ++ .... | -.+.++|.||.. ++.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-K~g~Tq~-in-~f~v-~--~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-KNGKTQA-IN-HFHV-G--KSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-CCcccee-ee-eeec-c--ceEEEEecCCcccccCCccCcchHh
Confidence 45689999999999999999999877643222111 1111111 11 1111 2 378999999932 233
Q ss_pred hhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 132 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 132 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.....|+-+ --.+.+.+|++-+. ...+....+++.+ .++|+.+|+||||....
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i---~~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPI---QPTDNPEIAWLGE-----NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCC---CCCChHHHHHHhh-----cCCCeEEeeehhhhhhh
Confidence 334455532 22456677887652 2232222333332 79999999999997643
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=84.13 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=53.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.....|+|+|..++|||||+.+|.+..-. ..+..-+.+...+.. -..+ ...++.+|-..|...+..++.-.+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~---~~~~aLeYty~~v~d-~~~d-d~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDP---KKGLALEYTYLDVKD-EDRD-DLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCC---CCCcccceEEEeecc-CcCC-cCceeeEEEcCCCcchHhHhcccCCcc
Confidence 45689999999999999999998764321 111111111111111 1111 224688898888666666665545432
Q ss_pred ----CEEEEEEeCCCC
Q 024385 142 ----AGIVFVVDALEF 153 (268)
Q Consensus 142 ----d~ii~v~d~~~~ 153 (268)
-++|+|+|.+.+
T Consensus 98 ~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKP 113 (472)
T ss_pred cccceEEEEEecCCCh
Confidence 268899999997
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=80.14 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=62.8
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++..+..+++.+|++++|+|+++...+.. ..+ ... ..+.|+++|+||+|+..........+.+.+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~---~~l---~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-- 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI---PRL---RLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA-- 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc---hhH---HHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH--
Confidence 57888899999999999999988622211 111 111 157899999999999754322211111110000
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.... . .....++++||++|+ +++|+++|.+.++
T Consensus 92 -~~~~-----------------------~-~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 92 -AAGL-----------------------G-LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred -Hhhc-----------------------C-CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 0000 0 001257899999999 9999999988763
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=86.91 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=94.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------------cccc------ceeeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------------HQGT------VTSMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------------~~~~------~~~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
++.+++.++.+.+.|||||...|....- .++. -.++..+.....+... ..-++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 5667899999999999999999864321 0000 0011111100000000 122344
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC---CC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---TA 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~---~~ 192 (268)
.+.++++|.|||.+|.+..-..++-.|+.++|+|+-++ -+-+....+.+.+. ..+.-+++.||+|.. -.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--vCVQTETVLrQA~~------ERIkPvlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--VCVQTETVLRQAIA------ERIKPVLVMNKMDRALLELQ 168 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--eEechHHHHHHHHH------hhccceEEeehhhHHHHhhc
Confidence 57899999999999999999999999999999999887 23444455555554 455567889999953 23
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.+++.+.+.+..+.++...+
T Consensus 169 ~~~EeLyqtf~R~VE~vNviis 190 (842)
T KOG0469|consen 169 LSQEELYQTFQRIVENVNVIIS 190 (842)
T ss_pred CCHHHHHHHHHHHHhcccEEEE
Confidence 4667777777776665544444
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=90.77 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc-------ccceee-----ccccceEEe--ecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVTSM-----EPNEDTFVL--HSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+.++|.+.-+-.+||||+-.+.+.-.-.. +..+.+ +.+.+.... -....+.+ ++++++|||||.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~--~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD--YRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc--ceeEEecCCCce
Confidence 56789999999999999999864321100 000000 001111111 11123343 799999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+|.-...+.++-.|++|+|+|+..+-+ .+....+.++.+ .++|.+.++||+|...+....
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVq--sQt~tV~rQ~~r------y~vP~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVE--SQTETVWRQMKR------YNVPRICFINKMDRMGASPFR 175 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEccccee--hhhHHHHHHHHh------cCCCeEEEEehhhhcCCChHH
Confidence 999999999999999999999988722 233333444443 689999999999998765443
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-08 Score=75.13 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=55.0
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+..+|++++|+|+.++..+ ....+...+... ..+.|+++|+||+|+.+. ++.. ..+..+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~---~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~---~~~~----~~~~~~------ 64 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT---RCKHVEEYLKKE---KPHKHLIFVLNKCDLVPT---WVTA----RWVKIL------ 64 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc---cCHHHHHHHHhc---cCCCCEEEEEEchhcCCH---HHHH----HHHHHH------
Confidence 456789999999999986221 122333333221 146899999999999642 2221 112211
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.... ....+++||++|. +++|.++|.++
T Consensus 65 ---------------------~~~~-~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 65 ---------------------SKEY-PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ---------------------hcCC-cEEEEEeeccccccHHHHHHHHHHH
Confidence 1101 1235789999988 99999988765
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-08 Score=86.44 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=59.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|++|+..-+..|..++..+++||||++.++.. ..+.+....+..+...... .+.|++|++||.
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~--~~~~iil~lnK~ 313 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF--KNTPIILFLNKI 313 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG--TTSEEEEEEE-H
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc--ccCceEEeeecH
Confidence 57899999999988999999999999999999986431 2366777788888876544 689999999999
Q ss_pred CCC
Q 024385 188 DKV 190 (268)
Q Consensus 188 Dl~ 190 (268)
|+.
T Consensus 314 D~f 316 (389)
T PF00503_consen 314 DLF 316 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-08 Score=83.40 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=61.5
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
....+.++|.+++|+|+.++.-....+..++..... .++|+++|+||+||... ++.. .+...+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------~~ip~ILVlNK~DLv~~---~~~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------TGLEIVLCLNKADLVSP---TEQQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEchhcCCh---HHHH-HHHHHHH------
Confidence 345678999999999998762244566777765532 68999999999999743 2111 1111111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++.++++||++|+ +++|.++|...
T Consensus 147 --------------------------~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 --------------------------QWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred --------------------------hcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 112468899999998 99999888653
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-09 Score=88.58 Aligned_cols=122 Identities=25% Similarity=0.269 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--------Cccccc-c---eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGT-V---TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+.++|.++.+.++||||...|++.- ....+. + ..++.+.+.......+.++-+.++++++|||||.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4568999999999999999887531 111111 1 112222333333333444444489999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+-...+.++-.|+++.|+|++.+. .-+.+.-|- +. .+.++|-+.++||+|...+
T Consensus 116 ~leverclrvldgavav~dasagv-e~qtltvwr-qa------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGV-EAQTLTVWR-QA------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCc-ccceeeeeh-hc------cccCCchhhhhhhhhhhhh
Confidence 999999999999999999999872 223333332 11 1378999999999998754
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=77.09 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||. +........++.+|.+++|+|++++..... ..+...+ .+.|+++|+||+|+... +...+.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~---~~i~~~~-------~~k~~ilVlNK~Dl~~~---~~~~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN---PLLEKIL-------GNKPRIIVLNKADLADP---KKTKKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC---hhhHhHh-------cCCCEEEEEehhhcCCh---HHHHHHH
Confidence 56654 344556778899999999999987622211 1111111 45799999999999632 1111111
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++. ....++.+||++|+ +++|.+.|.+.+
T Consensus 69 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 69 -KYFES--------------------------------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -HHHHh--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 01257889999998 999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-08 Score=81.58 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=81.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
..+.++|+|||+-....+.....-.|++++++.+++.. ...+..+.+..+-.. .-..++++-||+|+..+....
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-PQPQTsEHLaaveiM-----~LkhiiilQNKiDli~e~~A~ 198 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-PQPQTSEHLAAVEIM-----KLKHIIILQNKIDLIKESQAL 198 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-CCCchhhHHHHHHHh-----hhceEEEEechhhhhhHHHHH
Confidence 46789999999887777666666678899999888752 233344444443322 345789999999999876665
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+++.+.++.- .-.+.+++++||--+. |+.+.++|.+++|
T Consensus 199 eq~e~I~kFi~~t-----------------------------~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 199 EQHEQIQKFIQGT-----------------------------VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHhcc-----------------------------ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 5555555433310 1234589999998876 9999999999876
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=82.79 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=80.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++-..+.++|+.++|||.+++.+.++.+......+..+... .+. +...|+...+.+-|.+-. ........- ..|
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~a---vn~-v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYA---VNS-VEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCcee---eee-eeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 44578999999999999999999998886644444444322 222 112244456666666543 212221122 679
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|+++++||++++ .++.........-... ...|+++|+.|+|+...
T Consensus 497 Dv~~~~YDsS~p-~sf~~~a~v~~~~~~~-----~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 497 DVACLVYDSSNP-RSFEYLAEVYNKYFDL-----YKIPCLMVATKADLDEV 541 (625)
T ss_pred eeEEEecccCCc-hHHHHHHHHHHHhhhc-----cCCceEEEeeccccchh
Confidence 999999999987 7777776655444332 68999999999999654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-08 Score=74.18 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.+|+|||||+|+|.+.... ..+..+++++... .+...+ .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~---~~~~~~g~T~~~~--~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC---KVAPIPGETKVWQ--YITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce---eeCCCCCeeEeEE--EEEcCC---CEEEEECcCC
Confidence 4678999999999999999999986541 1122222222211 111122 4789999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=80.41 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.+-++++||||+|||||+..|...-. -.++..-.+..++. .|+..++++..+|. + -+.+......+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvv-----sgK~RRiTflEcp~--D-l~~miDvaKIa 134 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVV-----SGKTRRITFLECPS--D-LHQMIDVAKIA 134 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEe-----ecceeEEEEEeChH--H-HHHHHhHHHhh
Confidence 4456677999999999999999876421 11222222223222 35557899999993 3 33444566779
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|.+++.+|.+-+ |+--...+..++... ....++-|++..|+....
T Consensus 135 DLVlLlIdgnfG---fEMETmEFLnil~~H----GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 135 DLVLLLIDGNFG---FEMETMEFLNILISH----GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred heeEEEeccccC---ceehHHHHHHHHhhc----CCCceEEEEeecccccCh
Confidence 999999999987 433333334444431 334477899999998643
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=78.71 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=80.0
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-------eeccccceEEe---------------e---------
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------SMEPNEDTFVL---------------H--------- 107 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-------~~~~~~~~~~~---------------~--------- 107 (268)
...+...||+|.|..++||||++|+++.++.-.+... .+....|...+ +
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3346788999999999999999999876654111100 00000000000 0
Q ss_pred c--------ccccCCce-----eeEEEEeCCCCCC---chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 024385 108 S--------ESTKKGKI-----KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 171 (268)
Q Consensus 108 ~--------~~~~~~~~-----~~~~i~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~ 171 (268)
. .+.+.+.. -.+.++|.||.+- ..+....+...+|++|||+.+.+. -.....+++....+
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~-- 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE-- 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc--
Confidence 0 00111110 1467899999764 344466788899999999999885 23334445544433
Q ss_pred CccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 172 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
....|.|+.||.|.... ..+..+.+.+++.
T Consensus 260 ----~KpniFIlnnkwDasas--e~ec~e~V~~Qi~ 289 (749)
T KOG0448|consen 260 ----EKPNIFILNNKWDASAS--EPECKEDVLKQIH 289 (749)
T ss_pred ----cCCcEEEEechhhhhcc--cHHHHHHHHHHHH
Confidence 34456778889998643 2334444444333
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-08 Score=74.05 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.||+|||||+|++.+.... ..+..|++++.... +..+ ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~---~~~~~pg~T~~~~~--~~~~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC---NVGATPGVTKSMQE--VHLD---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc---eecCCCCeEcceEE--EEeC---CCEEEEECcCC
Confidence 3479999999999999999999986541 11222333222111 1122 25799999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.6e-08 Score=72.05 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
..+++++|.+|+|||||+|++.+..... .+..+..+.... .+..++ .+.+|||||..
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~---~~~~~~~~~~~~--~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVS---VSATPGKTKHFQ--TIFLTP---TITLCDCPGLV 139 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcee---eCCCCCcccceE--EEEeCC---CEEEEECCCcC
Confidence 3489999999999999999999876531 122222222221 122233 57999999964
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-07 Score=77.21 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=61.2
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+.++|.+++|+|+.++.-++..+..|+..+.. .++|+++|+||+|+... .+. ...... ..
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~-~~~~~~-~~-------- 135 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDD--EEE-ELELVE-AL-------- 135 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCCh--HHH-HHHHHH-HH--------
Confidence 3478899999999999873267777887765543 57899999999999753 111 110000 00
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...++++++||++|. +++|.++|..
T Consensus 136 ------------------------~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ------------------------ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ------------------------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 123478999999998 9999888764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=76.67 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=66.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc--------ccC-CceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES--------TKK-GKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~i~DtpG~~~~ 130 (268)
....++.|||.||+|||||+|.|+....... ...|++|+.++...+.+. ... -....++++|++|...-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4567999999999999999999998765332 356888887766554331 111 11246899999996543
Q ss_pred -------hhhHhhhccCCCEEEEEEeCCCC
Q 024385 131 -------RPKLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 131 -------~~~~~~~~~~~d~ii~v~d~~~~ 153 (268)
.....+.++.+|+++-|+++.+.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 33355678899999999998654
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=79.64 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||.. ........++.+|++++|+|+..+..+.. ..+...+ .+.|+++|+||+|+.+. ....+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l-------~~kp~IiVlNK~DL~~~---~~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIR-------GNKPRLIVLNKADLADP---AVTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHH-------CCCCEEEEEEccccCCH---HHHHHHH
Confidence 577653 34456778899999999999987632221 2222222 36799999999999642 1111111
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++. ...+++.+||++|. +++|.+.|.+.+
T Consensus 71 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 71 -KYFEE--------------------------------KGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred -HHHHH--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 11357889999998 999988887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-07 Score=68.91 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCCCchhhHhhh--------ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEF--------LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++||||..+........ .-..|.+++++|+......+... ..+...+..+. +|++||+|
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~~~~Qi~~ad--------~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TEAQSQIAFAD--------RILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HHHHHHHHHCC--------EEEEeccc
Confidence 567899999987655554432 23478999999998752212221 22333333322 67899999
Q ss_pred C
Q 024385 189 K 189 (268)
Q Consensus 189 l 189 (268)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=77.95 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc-ccc--cceeeccccceEEeeccc--------ccC-CceeeEEEEeCCCCCC---
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST-HQG--TVTSMEPNEDTFVLHSES--------TKK-GKIKPVHLVDVPGHSR--- 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~i~DtpG~~~--- 129 (268)
.++.++|.||+|||||+|.|++... ... ..+|+.|..+...++... ... -....+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 222 345567777766654321 000 0113689999999754
Q ss_pred ----chhhHhhhccCCCEEEEEEeCCC
Q 024385 130 ----LRPKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 ----~~~~~~~~~~~~d~ii~v~d~~~ 152 (268)
........++.+|+++.|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23345667899999999999964
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-07 Score=76.56 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=57.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|++++|+|+.++......+..|+..+.. .++|+++|+||+|+... .+...+ .....+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~~~~-~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDD--LEEARE-LLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCC--HHHHHH-HHHHHH----------
Confidence 58899999999998762333444666655433 68899999999999632 221111 111111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...++++++||++|+ +++|++++..
T Consensus 139 ----------------------~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 139 ----------------------AIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ----------------------HCCCeEEEEeCCCCccHHHHHhhccC
Confidence 112478999999998 9999988754
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=74.24 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.+|+|||||+|.|.+...... ...+..|++++..... .... .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI--PLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE--ecCC---CCEEEeCcCC
Confidence 557899999999999999999997653211 1222333333333222 2222 4699999994
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=69.63 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=50.6
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHH-HHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLY-DILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+.++..+. ..++. ..+.. .++|+++|+||+|+... ++..+.+.. +..
T Consensus 1 Dvvl~VvD~~~p~~~~---~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~---~~~~~~~~~-~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTR---SPDIERVLIKE-----KGKKLILVLNKADLVPK---EVLRKWLAY-LRH------------ 56 (155)
T ss_pred CEEEEEEeccCCcccc---CHHHHHHHHhc-----CCCCEEEEEechhcCCH---HHHHHHHHH-HHh------------
Confidence 7899999998862222 22333 22221 67899999999999643 222221111 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....++.+||++|. +++|.+.|.+.
T Consensus 57 -------------------~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 57 -------------------SYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred -------------------hCCceEEEEeccCCcChhhHHHHHHHH
Confidence 112367889999998 99999988653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=70.75 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccceeecc-ccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEP-NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
+...|.++|++++|||+|+|+|.+. .|.... +..+ +.+.+....... .+....+.++||||..+....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~--~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD--TSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC--CCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 4457899999999999999999998 663221 1122 223333322211 123368999999997654221
Q ss_pred Hhhhcc--CCCEEEEEEeCCCC
Q 024385 134 LDEFLP--QAAGIVFVVDALEF 153 (268)
Q Consensus 134 ~~~~~~--~~d~ii~v~d~~~~ 153 (268)
....+. -++++||..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 122223 38899999888765
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=71.67 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------Hh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------LD 135 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~ 135 (268)
..-+|+++|.|.+|||||+..++.... ...+++.++ -.-++..+.++| ..+++.|.||..+-.++ ..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeE-EEeecceEEecC--ceEEEecCcccccccccCCCCCceEE
Confidence 456899999999999999999987543 222333222 123445566666 58999999997643322 23
Q ss_pred hhccCCCEEEEEEeCCCC
Q 024385 136 EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~ 153 (268)
...+.+|.+++|.|++..
T Consensus 135 avArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS 152 (364)
T ss_pred EEeecccEEEEEecCCcc
Confidence 456789999999999987
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-07 Score=71.99 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=91.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hh-
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RP- 132 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~- 132 (268)
..-.++|+.+|.+|-|||||+..|.+-+|.....+..-|+..--....++.-.+....++++||.|..+. ..
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 3557899999999999999999999988855444334444433333444555666678999999996532 11
Q ss_pred ------hHhhhc---------------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 133 ------KLDEFL---------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 133 ------~~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+...|+ ...++++|.+.++.. ++..++-.-..-+. ..+.||-++-|.|...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH--~LKslDLvtmk~Ld------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH--SLKSLDLVTMKKLD------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc--chhHHHHHHHHHHh------hhhhhHHHHHHhhhhh
Confidence 122222 246789999999885 56666544433333 5677888889999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 024385 192 AHTKEFIRKQMEKEID 207 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~ 207 (268)
..........+..++.
T Consensus 191 K~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 191 KEELKRFKIKIMSELV 206 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444443
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=68.78 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=35.6
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
....+..+|++++|+|+.++.... ..+.+++... . .++|+++|+||+|+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~---~~k~~iivlNK~DL~~ 56 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D---PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c---CCCcEEEEEechhcCC
Confidence 456788999999999998873222 1333333321 1 4789999999999964
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=75.61 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=61.5
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|.+++|++.... .++..+..|+..... .++|+++|+||+|+..........+.+. ..+
T Consensus 118 aANvD~vlIV~s~~p~-~s~~~Ldr~L~~a~~------~~i~~VIVlNK~DL~~~~~~~~~~~~~~-~y~---------- 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LSLNIIDRYLVACET------LGIEPLIVLNKIDLLDDEGRAFVNEQLD-IYR---------- 179 (347)
T ss_pred EEEccEEEEEEeCCCC-CCHHHHHHHHHHHHh------cCCCEEEEEECccCCCcHHHHHHHHHHH-HHH----------
Confidence 3568999999998765 678888888774432 6789999999999975432222221111 111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++++++||++|+ +++|+++|...
T Consensus 180 ----------------------~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 ----------------------NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred ----------------------hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112478999999998 99999998754
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-07 Score=78.47 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=65.2
Q ss_pred CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHH
Q 024385 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKE 205 (268)
Q Consensus 127 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~ 205 (268)
.++|......+.+.++++++|+|+.+...+. ...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~-------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV-------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh-------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 4467777888889999999999998863222 22222222 467999999999997543 333333333322
Q ss_pred HHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 206 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+.. + .....++++||++|. ++++++.|.++
T Consensus 120 ~k~~------------------g-----------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKEL------------------G-----------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHc------------------C-----------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2210 0 001147889999998 99999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-08 Score=73.32 Aligned_cols=26 Identities=42% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+...++++|++|||||||+|.|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34789999999999999999999874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-07 Score=80.82 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc---
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL--- 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~--- 138 (268)
..+++++|.+|||||||+|+|.+....... ..+..|.++..... +..++ .+.++||||..... .+..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~~~---~~~l~DtPG~~~~~-~~~~~l~~~ 227 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPLDD---GHSLYDTPGIINSH-QMAHYLDKK 227 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEeCC---CCEEEECCCCCChh-HhhhhcCHH
Confidence 579999999999999999999875421111 12223333322222 22222 35799999976432 222222
Q ss_pred --------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 139 --------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 139 --------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
+......+.+|.... -.+.. ..++. ++. .....+.++++|.+.......+...+.+++.
T Consensus 228 ~l~~~~~~~~i~~~~~~l~~~q~-~~~gg-l~~~d-~~~-----~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 228 DLKYITPKKEIKPKTYQLNPNQT-LFLGG-LARFD-YLK-----GEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred HHhhcCCCCccCceEEEeCCCCE-EEEce-EEEEE-Eec-----CCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 234567777776553 11111 11111 111 1456678888888877655555555554443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-07 Score=69.93 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=36.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
....+++++|.+|+|||||+|++.+..+.. .+..+.++..... ...+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~---~~~~~~~T~~~~~--~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK---VGNKPGVTKGIQW--IKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee---ecCCCCEEeeeEE--EEec---CCEEEEECCCC
Confidence 345789999999999999999999876521 1111111111111 1112 25789999995
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-07 Score=75.43 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=73.1
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CCHHH---HHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNCSA---ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~---~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.++++.|+|||..|-..+.....++|..++|+++..++ ..|+. ..+.. .+... ..-...|+++||+|-..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt----~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT----AGVKHLIVLINKMDDPT 231 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHh----hccceEEEEEEeccCCc
Confidence 47899999999999999888999999999999995431 11211 11111 11111 14567899999999877
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHH
Q 024385 192 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 259 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~ 259 (268)
.+-..+..+.+...+..+-. ... |.. .....|++||+.+|. +.+..
T Consensus 232 vnWs~eRy~E~~~k~~~fLr-~~g--------------------~n~-~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLR-KLG--------------------FNP-KPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCcchhhHHHHHHHHHHHHH-Hhc--------------------ccC-CCCceeeecccccccchhhcc
Confidence 65444444444444443311 110 011 345689999999997 66543
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-07 Score=77.48 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=62.3
Q ss_pred EeCCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH
Q 024385 122 VDVPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 200 (268)
Q Consensus 122 ~DtpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 200 (268)
--.|||.. ........+..+|++++|+|+..+..+. ..++.... .+.|+++|+||+|+.+. .....
T Consensus 5 ~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~---~~~l~~~~-------~~kp~iiVlNK~DL~~~---~~~~~ 71 (287)
T PRK09563 5 QWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE---NPMIDKII-------GNKPRLLILNKSDLADP---EVTKK 71 (287)
T ss_pred cCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC---ChhHHHHh-------CCCCEEEEEEchhcCCH---HHHHH
Confidence 35688753 2344667889999999999998763221 12233332 36799999999999642 11111
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+ +.++ ....+++.+||+++. +++|.+.|.+.+
T Consensus 72 ~~-~~~~--------------------------------~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 72 WI-EYFE--------------------------------EQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HH-HHHH--------------------------------HcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11 1111 011357889999998 888888776653
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-07 Score=71.47 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=56.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~~ 137 (268)
-+|.++|-|.+||||++..+++-.. .+++... ++-..++....+.+ -.+++.|.||..+-. .+....
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyef-ttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviav 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEF-TTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAV 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccc-eeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEE
Confidence 4899999999999999999987543 2333322 12233344444555 589999999965421 223345
Q ss_pred ccCCCEEEEEEeCCCC
Q 024385 138 LPQAAGIVFVVDALEF 153 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~ 153 (268)
.+.|+.+++|.|+..+
T Consensus 134 artcnli~~vld~~kp 149 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKP 149 (358)
T ss_pred eecccEEEEEeeccCc
Confidence 6789999999999876
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.7e-07 Score=75.33 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+++++|.+|+|||||+|+|.+..... ++..|++++... .+...+ .+.++||||..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~---~~~~~g~T~~~~--~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK---VGNRPGVTKGQQ--WIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc---cCCCCCeecceE--EEEeCC---CEEEEECCCcc
Confidence 46789999999999999999999865421 111222222211 122222 57999999973
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-07 Score=75.92 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
...+++++|.+|+|||||+|+|.+.+... .+..|+++.... .+..++ .+.++||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~---~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK---TGNRPGVTKAQQ--WIKLGK---GLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc---cCCCCCeEEEEE--EEEeCC---cEEEEECCCcCC
Confidence 45789999999999999999999876411 112222222211 122222 578999999754
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.6e-07 Score=68.32 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
....+++++|.+|+|||||+|.+.+..... .+..+.+++..... ... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~---~~~~~~~t~~~~~~--~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK---VGNVPGTTTSQQEV--KLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc---ccCCCCcccceEEE--Eec---CCEEEEECCCC
Confidence 457889999999999999999999865311 11122222222211 111 25799999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-07 Score=75.89 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+++++|-||+|||||||+|.+... ..++-.|+.+.-. ..+.... .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~---~~~s~~PG~Tk~~--q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV---AKTSNRPGTTKGI--QWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc---eeeCCCCceecce--EEEEcCC---CeEEecCCCcC
Confidence 457899999999999999999999875 2222233222111 1122222 47999999964
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=68.11 Aligned_cols=69 Identities=33% Similarity=0.436 Sum_probs=48.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++.|.|..+..+....+.. ..|++|-|+|+....+......+...+.+..+. +|++||+|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD--------~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD--------VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc--------EEEEeccc
Confidence 56678999998887666655543 257899999999873323334455555555443 78999999
Q ss_pred CCCCC
Q 024385 189 KVTAH 193 (268)
Q Consensus 189 l~~~~ 193 (268)
+.++.
T Consensus 157 lv~~~ 161 (323)
T COG0523 157 LVDAE 161 (323)
T ss_pred CCCHH
Confidence 98765
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=72.28 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.++||||....... ..... ...+..++|+|++.+.+.+... ..... .-.+--+++
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~------~~~~~giIl 266 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHE------AVGLTGIIL 266 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHh------hCCCCEEEE
Confidence 68999999997643222 22221 2467889999999873333322 22221 122457899
Q ss_pred ecCCCCC
Q 024385 185 NKTDKVT 191 (268)
Q Consensus 185 nK~Dl~~ 191 (268)
||.|...
T Consensus 267 TKlD~t~ 273 (318)
T PRK10416 267 TKLDGTA 273 (318)
T ss_pred ECCCCCC
Confidence 9999653
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-05 Score=69.41 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=38.3
Q ss_pred eeEEEEeCCCCCCchhhHh----hh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||......... .+ ....+.+++|+|++.+ .........+.+ .-.+--+++||.|-.
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G-q~a~~~a~~F~~---------~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG-QAAEAQAKAFKD---------SVDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC-hhHHHHHHHHHh---------ccCCcEEEEECccCC
Confidence 6889999999765432222 22 2346789999999877 322222232221 122455677888764
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=66.34 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....+++++|.+|+|||||+|++.++.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=77.49 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=85.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.-++.|+.|+|..++|||+|+.+++.+.+ .+...|+.+++. .++..+++...+.+.|-+|+.+ ..|...
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty----~~~e~~e~~~~k--kE~vv~gqs~lLlirdeg~~~~-----aQft~w 95 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTY----TQDESPEGGRFK--KEVVVDGQSHLLLIRDEGGHPD-----AQFCQW 95 (749)
T ss_pred ccchhheeeeecccCCceeeeeeecccee----ccccCCcCccce--eeEEeeccceEeeeecccCCch-----hhhhhh
Confidence 35688999999999999999999998876 334455555554 4455677777888999888543 567788
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
.|++||||...+. .+++.+......+-.+.. ...+|+++++++-
T Consensus 96 vdavIfvf~~~d~-~s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 96 VDAVVFVFSVEDE-QSFQAVQALAHEMSSYRN--ISDLPLILVGTQD 139 (749)
T ss_pred ccceEEEEEeccc-cCHHHHHHHHhhcccccc--cccchHHhhcCcc
Confidence 9999999999997 788888777666654433 3678888888754
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-07 Score=76.07 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
..++++|.+|||||||+|+|.+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3589999999999999999997643
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=70.55 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=55.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
++++++|.+|+.+-+..|...+....++|||+.+++.. +.+.+....+..+-.+... ..+.+|+++||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL--~tisvIlFLNKq 279 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL--RTISVILFLNKQ 279 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH--hhhheeEEecHH
Confidence 67899999999999999999999999999999997641 2233444444444433332 678899999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 280 Dlla 283 (379)
T KOG0099|consen 280 DLLA 283 (379)
T ss_pred HHHH
Confidence 9864
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=75.29 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...++.++|.+|||||||+|+|........ ...+..|+++..... +..++ ...++||||..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCC---CcEEEECCCcc
Confidence 456899999999999999999986432111 112334444443332 22222 23799999975
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-06 Score=72.08 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++|.+|||||||+|+|..+
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCch
Confidence 3458899999999999999999864
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-06 Score=67.44 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCCCchhhH--hhh---ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKL--DEF---LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~--~~~---~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
....++.+.|..+..... ... .-..+.+|.|+|+... .........+...+..++ ++++||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~AD--------vIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFAD--------VIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-S--------EEEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccc-cccccchhhhhhcchhcC--------EEEEeccccCC
Confidence 467888999977655551 111 1236889999999774 334445555666665543 78899999976
Q ss_pred CC
Q 024385 192 AH 193 (268)
Q Consensus 192 ~~ 193 (268)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-06 Score=82.50 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccc--eeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKL 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~ 134 (268)
+=.+|+|++|+||||++++- +-.++-... .......+. +.+.+.-..+ ...++||+|.. .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~-t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGG-TRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCC-CcccceEecC---CEEEEcCCCccccCCCcccccHHHH
Confidence 45899999999999999986 333422110 000000000 0011111112 44799999932 123345
Q ss_pred hhhc---------cCCCEEEEEEeCCCCCC-CH-------HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 135 DEFL---------PQAAGIVFVVDALEFLP-NC-------SAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 135 ~~~~---------~~~d~ii~v~d~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
..++ +..|+||+++|+.+... +- ..+...+.++.+. .....||.|++||+|+.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 5444 34799999999976521 11 2333444444443 23799999999999987
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=69.38 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|.+|+|||||+|+|.+...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 46899999999999999999997643
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=68.91 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||+|....... +.... ...|.+++|+|+..+.+..... ..+... -..--+++||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~------~~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA------VGIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc------CCCCEEEEeeecCC
Confidence 56899999997643222 22222 2578899999998862222222 222211 11346788999986
Q ss_pred CCC
Q 024385 191 TAH 193 (268)
Q Consensus 191 ~~~ 193 (268)
...
T Consensus 293 ~~~ 295 (336)
T PRK14974 293 AKG 295 (336)
T ss_pred CCc
Confidence 543
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=73.12 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..++|+|++|||||||+|+|.++.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCcc
Confidence 458999999999999999999764
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=65.99 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred eEEEEeCCCCCCchhh------HhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 118 PVHLVDVPGHSRLRPK------LDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~------~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
..-++|+|||.+...- ...++.+- =+++|++|+.=-.++..-+..-+..+..... -.+|-|=|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~---lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS---LEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH---hcCcchhhhhHHH
Confidence 5689999998764321 22333332 2577888775432222223333333322221 6889999999999
Q ss_pred CCCCCCHHHHHH
Q 024385 189 KVTAHTKEFIRK 200 (268)
Q Consensus 189 l~~~~~~~~~~~ 200 (268)
|....+..++.+
T Consensus 176 Llk~~~k~~l~~ 187 (273)
T KOG1534|consen 176 LLKDKNKKELER 187 (273)
T ss_pred HhhhhhHHHHHH
Confidence 987755444443
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-05 Score=65.79 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++.|.|..+..+....++. ..+++|.|+|+.......... ......+..+ =+|++||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~A--------D~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYA--------DRILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhC--------CEEEEeccc
Confidence 35678999998877666655432 247899999998752212111 1222223322 278899999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
+...
T Consensus 162 l~~~ 165 (318)
T PRK11537 162 VAGE 165 (318)
T ss_pred cCCH
Confidence 9863
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=68.13 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=56.4
Q ss_pred eEEEEeCCCCCC-------------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 118 PVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 118 ~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
++.++|.||... .......|+.+.+++|+|+--.. ...-.....++..... +.+...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDLVsq~D--P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDLVSQMD--PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHHHHhcC--CCCCeeEEEE
Confidence 578999999542 23345678999999999984333 3444455566666554 3788899999
Q ss_pred ecCCCCCCC--CHHHHHHHHH
Q 024385 185 NKTDKVTAH--TKEFIRKQME 203 (268)
Q Consensus 185 nK~Dl~~~~--~~~~~~~~l~ 203 (268)
+|+|+.... +++.+++.++
T Consensus 487 TKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 487 TKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred eecchhhhccCCHHHHHHHHh
Confidence 999998753 6666776665
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.7e-05 Score=63.03 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=40.6
Q ss_pred eeEEEEeCCCCCCchhhHh----h---hc-----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 KPVHLVDVPGHSRLRPKLD----E---FL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.++||||......... . .. ..+|.+++|+|++.+.+.+. ......+. -.+--+++
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~----~~~~f~~~------~~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE----QAKVFNEA------VGLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH----HHHHHHhh------CCCCEEEE
Confidence 6889999999765332211 1 11 23889999999987622222 22333221 12457899
Q ss_pred ecCCCCCCC
Q 024385 185 NKTDKVTAH 193 (268)
Q Consensus 185 nK~Dl~~~~ 193 (268)
||.|.....
T Consensus 225 TKlDe~~~~ 233 (272)
T TIGR00064 225 TKLDGTAKG 233 (272)
T ss_pred EccCCCCCc
Confidence 999986543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-06 Score=68.98 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|+|||||+|.|.+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC
Confidence 456799999999999999999987653
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.7e-05 Score=65.12 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.1
Q ss_pred eeEEEEeCCCCCCchhhHhhhc-------cCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFL-------PQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~-------~~~d~ii~v~d~~~~ 153 (268)
....++.|.|..+.......+. -..|++|.|+|+...
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh
Confidence 4668899999888766655442 135789999999753
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=68.18 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|++|+|||||+|.|.+...
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhh
Confidence 46899999999999999999987654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.3e-05 Score=64.45 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||....... +...++ ..+.+++|+|++.. ...+...+..+.. -..-=++++|.|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---~~d~~~i~~~F~~-------~~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD-------IHIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---hHHHHHHHHHhcC-------CCCCEEEEEcccCC
Confidence 57899999997542221 223332 35678999998765 2344444433321 11235788999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 54
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.8e-05 Score=65.38 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc---cccc--ceeeccc----------------cceEEeecc-------cccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST---HQGT--VTSMEPN----------------EDTFVLHSE-------STKKG 114 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~--~~~~~~~----------------~~~~~~~~~-------~~~~~ 114 (268)
+...++++|++|+||||++.+|..... .... ..+.... ......... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 456899999999999999999864311 0001 1111110 000000000 01122
Q ss_pred ceeeEEEEeCCCCCCchhhHh---hhc---cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLD---EFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~---~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
..+.++||+|......... ..+ ....-.++|++++...+.+.+....+.......... ..-.-=++++|.|
T Consensus 216 --~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~-~~~~~~~I~TKlD 292 (374)
T PRK14722 216 --KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAA-LPDLAGCILTKLD 292 (374)
T ss_pred --CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccc-cCCCCEEEEeccc
Confidence 5789999999764333221 112 223456899999987333333333333322110000 0012347779999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
-...
T Consensus 293 Et~~ 296 (374)
T PRK14722 293 EASN 296 (374)
T ss_pred cCCC
Confidence 7643
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.3e-05 Score=67.31 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=55.5
Q ss_pred hhccCCC-EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+...+ .+++|+|+.+...+. ...+..+. .+.|+++|+||+|+.+.. ..+.+.+.+....+..
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~-------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~---- 129 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV-------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL---- 129 (365)
T ss_pred HhhcccCcEEEEEEECccCCCch---hHHHHHHh-------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc----
Confidence 3444455 899999999863332 22333322 467999999999997533 2233332222211110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ .....++.+||++|. ++++++.|.++.
T Consensus 130 --------------g-----------~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 --------------G-----------LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred --------------C-----------CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 001147889999998 999999987653
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.7e-05 Score=64.50 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=41.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecc-cccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~DtpG~~~ 129 (268)
..++.++|+|-||+|||||+|.+...........+.+...+...--.+ +.+... -.+.++||||...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 468999999999999999999986544322223333332222211111 222232 3689999999653
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=57.27 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=40.5
Q ss_pred eeEEEEeCCCCCCchhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||||...+... .... ....+.+++|+|+... ....+....+.+. .+ ..-++.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~----~~~~~~~~~~~~~-----~~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG----QDAVNQAKAFNEA-----LG-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC----hHHHHHHHHHHhh-----CC-CCEEEEECCcCC
Confidence 56889999997533211 1111 2348999999999764 2333444444432 22 356778999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 54
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00024 Score=53.11 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=71.3
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccc---cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+.-|.+|+|||++.-.+...--..+ -.....++.. .-.+.+.++|+|+.. .......+..+|.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-----------~~~yd~VIiD~p~~~--~~~~~~~l~~aD~v 70 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-----------NLDYDYIIIDTGAGI--SDNVLDFFLAADEV 70 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-----------CCCCCEEEEECCCCC--CHHHHHHHHhCCeE
Confidence 4567889999998766532100000 1111111111 111578999999854 34445678899999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+++++.+.. ++......+..+.... ...++.+|+|+++.. ...++..+.+++.+++
T Consensus 71 viv~~~~~~--s~~~~~~~l~~l~~~~----~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 71 IVVTTPEPT--SITDAYALIKKLAKQL----RVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred EEEcCCChh--HHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 999999874 4665555555554321 456788999999743 3344455555554444
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-05 Score=64.65 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=56.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|.+++|+++... -+...+..++..+.. .++|.+||+||+||.+. .++..+.+. .+
T Consensus 110 aANvD~vliV~s~~p~-~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~----~~-------- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVE----AL-------- 168 (356)
T ss_pred EEeCCEEEEEEecCCC-CChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHH----Hh--------
Confidence 4678999999999754 334455555555443 67788999999999753 211112211 10
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
...++++.+||++|+ +++|.++|.
T Consensus 169 ----------------------~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 ----------------------APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred ----------------------CCCCcEEEEECCCCccHHHHHHHhh
Confidence 223578999999998 999999885
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=57.88 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+.+.++||+|... ....++..+|-+++|..++.. +...-.+- .+. ..-=++++||+|
T Consensus 92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~-D~y~~~k~---~~~--------~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG-DDIQAIKA---GIM--------EIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch-hHHHHhhh---hHh--------hhcCEEEEeCCC
Confidence 6889999999652 234588889999999877743 21211111 122 222378899998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.4e-06 Score=71.93 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
..+|.+||.|||||||+||.|.+.+. ...+.+|+-+..... +.+.. .+.+.|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk---VsVS~TPGkTKHFQT--i~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK---VSVSSTPGKTKHFQT--IFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce---eeeecCCCCcceeEE--EEcCC---CceecCCCCcc
Confidence 47899999999999999999999874 222333433322222 22222 57899999964
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.3e-05 Score=62.10 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||||....... +..++ ...+-+++|+|++... +.+. ........ .+ +-=++++|.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~-~~~~~~~~-----~~-~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ---EDLE-QALAFYEA-----FG-IDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHH-HHHHHHHH-----SS-TCEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh---HHHH-HHHHHhhc-----cc-CceEEEEeecCC
Confidence 57899999997654332 22222 2567899999999872 3332 22233221 11 224669999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 54
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.9e-05 Score=46.37 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 140 QAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
-.++++|++|+++.. -++++....+.++... ..+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL----FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH----TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH----cCCCCEEEEEeccC
Confidence 368899999999863 2577777777777664 25999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.3e-06 Score=66.22 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=55.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|.+|+..-+..|.+.+.+.-.++|++..++. ++.+++....+..++..... .+.++|+++||.
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF--~nssVIlFLNKk 276 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF--QNSSVILFLNKK 276 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc--cCCceEEEechh
Confidence 5678999999988788888888777666666554321 24567777778888876554 789999999999
Q ss_pred CCCCC
Q 024385 188 DKVTA 192 (268)
Q Consensus 188 Dl~~~ 192 (268)
|+..+
T Consensus 277 DlLEe 281 (359)
T KOG0085|consen 277 DLLEE 281 (359)
T ss_pred hhhhh
Confidence 99753
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=53.85 Aligned_cols=109 Identities=22% Similarity=0.387 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc----CCcccccceeeccccceEEeecccccCCceeeEEEEeCC-CCC--------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD----GSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP-GHS-------- 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp-G~~-------- 128 (268)
+...+|.+.|+||+||||++.++.. ..+.. +-+. ..++..+|+..-+.++|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv----------gGf~-t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~ 71 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV----------GGFI-TPEVREGGKRIGFKIVDLATGEEGILARVGF 71 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee----------eeEE-eeeeecCCeEeeeEEEEccCCceEEEEEcCC
Confidence 3567999999999999999988753 22211 1111 1223345555667777776 311
Q ss_pred ------Cc-----------hhhHhhhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 129 ------RL-----------RPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 129 ------~~-----------~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
+| .+..+..++.+|++ ++|=-.+.+ ......+.+..++. .+.|++.++.+-+.
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~------~~kpliatlHrrsr 142 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLK------SGKPLIATLHRRSR 142 (179)
T ss_pred CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhc------CCCcEEEEEecccC
Confidence 11 11233444556754 456555421 11223333444443 78899999887765
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=62.65 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=38.5
Q ss_pred eeEEEEeCCCCCCch----hhHhhhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLR----PKLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
+.+.++||||..... ..+...+. ...-+.+|++++.. ...+...+..+ ...+ --+++||.|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---~~~l~~~~~~f--------~~~~~~~vI~TKlD 368 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---YEDLKDIYKHF--------SRLPLDGLIFTKLD 368 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---HHHHHHHHHHh--------CCCCCCEEEEeccc
Confidence 678999999975432 22333433 23467888998775 23333333332 1222 258899999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
-...
T Consensus 369 et~~ 372 (424)
T PRK05703 369 ETSS 372 (424)
T ss_pred cccc
Confidence 8543
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=65.16 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc-----ccccceeecccc-------------ceEEeecc---------cccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST-----HQGTVTSMEPNE-------------DTFVLHSE---------STKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~-----~~~~~~~~~~~~-------------~~~~~~~~---------~~~~~~ 115 (268)
....++++|++|+||||++..|...-. ..-...+.++.. -...+... +... .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457899999999999999988753200 000111111100 00001100 0000 1
Q ss_pred eeeEEEEeCCCCCCchhhHhh---hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDE---FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.+.+.|+||+|.......... .+. .....++|++++.. ...+...+..+. ...+.-+++||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~Dl~eii~~f~-------~~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSDLDEVVRRFA-------HAKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhHHHHHHHHHH-------hhCCeEEEEecCcCc
Confidence 267899999997543222111 111 12346788888764 344444444332 223567999999985
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 4
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=62.60 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC------Ccccccceeeccccce------------EEeec-----c-----cccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG------STHQGTVTSMEPNEDT------------FVLHS-----E-----STKKG 114 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~------------~~~~~-----~-----~~~~~ 114 (268)
+...|+++||+||||||-+-.|... +....-+++....++. .++.. + ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4778999999999999988776332 2111111111111000 00000 0 01122
Q ss_pred ceeeEEEEeCCCCCCchh----hHhhhccCC--CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEeecC
Q 024385 115 KIKPVHLVDVPGHSRLRP----KLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKT 187 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~----~~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~nK~ 187 (268)
+.+.++||.|...+.. .+..++..+ .-+.+|++++.. ...+...+..+ ..+|+ -++++|.
T Consensus 282 --~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---~~dlkei~~~f--------~~~~i~~~I~TKl 348 (407)
T COG1419 282 --CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---YEDLKEIIKQF--------SLFPIDGLIFTKL 348 (407)
T ss_pred --CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---hHHHHHHHHHh--------ccCCcceeEEEcc
Confidence 5789999999765432 344555443 345678888876 34554444443 23333 3678999
Q ss_pred CCCCC
Q 024385 188 DKVTA 192 (268)
Q Consensus 188 Dl~~~ 192 (268)
|-...
T Consensus 349 DET~s 353 (407)
T COG1419 349 DETTS 353 (407)
T ss_pred cccCc
Confidence 97643
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.5e-05 Score=74.30 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhHhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKLDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~~~ 136 (268)
+=.+|+|++|+||||++..- +.+|+-.....-....+.-+.+.+.-+.+ .-.++||+|.. .-...|..
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 34789999999999988753 22222111100000000001222222223 45799999932 11233443
Q ss_pred h---------ccCCCEEEEEEeCCCCCCC--------HHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 137 F---------LPQAAGIVFVVDALEFLPN--------CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 137 ~---------~~~~d~ii~v~d~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+ .+..|+||+.+|+.+-... ...+...+.++... .....|+++++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t---L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET---LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh---hccCCceEEEEecccccc
Confidence 3 2457999999999764211 11123334444333 237899999999999976
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=58.14 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred eEEEEeC-CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCC-CcEEEEeecCCCC
Q 024385 118 PVHLVDV-PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 190 (268)
Q Consensus 118 ~~~i~Dt-pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~piivv~nK~Dl~ 190 (268)
.+.++|| +|.+.|. +...+.+|.+|.|+|++.. ++. ..+.+.++.+. -+ .++.+|+||+|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~--sl~-taeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK--SLR-TAERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH--HHH-HHHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 4555565 3443332 3345679999999999984 443 34445555554 34 7899999999964
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.6e-05 Score=60.66 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=40.7
Q ss_pred eeEEEEeCCCCCCchhh------HhhhccCCCE---EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPK------LDEFLPQAAG---IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~------~~~~~~~~d~---ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
....++|+|||.++... .-+++++.+. ++-.+|+---.+.-.-+...+..+...- ....|-+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl---~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML---HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH---hhcccchhhhhHh
Confidence 46789999998764322 2244555553 4445555321111233333333333221 1577888899999
Q ss_pred CCCCCC
Q 024385 188 DKVTAH 193 (268)
Q Consensus 188 Dl~~~~ 193 (268)
|+....
T Consensus 174 Dl~~~y 179 (290)
T KOG1533|consen 174 DLLKKY 179 (290)
T ss_pred HHHHhh
Confidence 987643
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=58.10 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=62.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..+.|-+++|+.+.++.-+...+..+|...-. .++..+||+||+||........ +.......
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~------~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~---------- 138 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA------GGIEPVIVLNKIDLLDDEEAAV--KELLREYE---------- 138 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH------cCCcEEEEEEccccCcchHHHH--HHHHHHHH----------
Confidence 34577888888998885566667776655543 6788888999999987655443 22222222
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++++.+||++++ +++|.+++..+
T Consensus 139 ----------------------~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 139 ----------------------DIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----------------------hCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 235689999999998 99999887654
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=51.76 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=48.4
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.+.+.++|||+... ......+..+|.+++++.++.. +.......+..+.. .+.|+.+|+||+|...
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--~~~~~~~~~~~l~~------~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--GLHDLERAVELVRH------FGIPVGVVINKYDLND 157 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--cHHHHHHHHHHHHH------cCCCEEEEEeCCCCCc
Confidence 37899999997643 2445567889999999999864 56666666654433 4567899999999753
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=63.17 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999999998875
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7e-05 Score=63.95 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=40.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
.++...|.++|.||+||||+||.|...+... +..+ .+...+-..++.. .++-++|+||..-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCk--vAPI---pGETKVWQYItLm---krIfLIDcPGvVy 364 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCK--VAPI---PGETKVWQYITLM---KRIFLIDCPGVVY 364 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccc--ccCC---CCcchHHHHHHHH---hceeEecCCCccC
Confidence 4678899999999999999999999887521 2222 2222211112222 3688999999653
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=63.92 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=25.9
Q ss_pred eeEEEEeCCCCCCchhhH----h--hhccCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKL----D--EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~----~--~~~~~~d~ii~v~d~~~~ 153 (268)
+.+.|+||||........ . ..+..+|.+++|+|++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 478999999976543221 1 123467899999999886
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00045 Score=60.88 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++|+||||++..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998754
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=61.64 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=34.6
Q ss_pred ceeeEEEEeCCCCCCch-hhHhh-----hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 024385 115 KIKPVHLVDVPGHSRLR-PKLDE-----FLPQAAGIVFVVDALEFLPNCSAASEYLYDIL 168 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~ 168 (268)
+.+.+.|+||+|..... ++... -.-..|-+|||+|++-+ .........+.+..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-Qaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-QAAEAQARAFKETV 240 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-HhHHHHHHHHHHhh
Confidence 34789999999954432 22221 12347899999999988 55555555555543
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.003 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
....-+.+|||..+|||||++||.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 456789999999999999999983
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=62.53 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=24.8
Q ss_pred eeEEEEeCCCCCCchhhHh----h--hccCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD----E--FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~--~~~~~d~ii~v~d~~~~ 153 (268)
+.+.|+||||........- . ..-..+.+++|+|+..+
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 5789999999654322211 1 12347889999999875
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00083 Score=59.55 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l 84 (268)
+...|+++|++|+||||++-.|
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567999999999999976655
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00071 Score=63.63 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999988764
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=54.99 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHH--HHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAA--SEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.-.++.|.|..+..+....|+. ..|++|-|+|+......+.+. ...+.+...+. ...=-++.||
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi-----A~AD~II~NK 220 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI-----ALADRIIMNK 220 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH-----hhhheeeecc
Confidence 45678999999988777666553 368999999996531000000 01111111111 0112467899
Q ss_pred CCCCCCCCHHHHHHHHH
Q 024385 187 TDKVTAHTKEFIRKQME 203 (268)
Q Consensus 187 ~Dl~~~~~~~~~~~~l~ 203 (268)
.|+........+++.+.
T Consensus 221 tDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 221 TDLVSEEEVKKLRQRIR 237 (391)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 99998766555555554
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0001 Score=63.06 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=40.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
++..++.|+|.||+||||+||+|..... ......|+.++... ++..+. .+.|+|.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~---C~vg~~pGvT~smq--eV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA---CNVGNVPGVTRSMQ--EVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc---ccCCCCccchhhhh--heeccC---CceeccCCcee
Confidence 4578999999999999999999988764 12222233332221 233333 68999999964
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00051 Score=60.25 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCC-cccc---cceeecc----------------ccceEEee--c--ccccCCceeeE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGS-THQG---TVTSMEP----------------NEDTFVLH--S--ESTKKGKIKPV 119 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~-~~~~---~~~~~~~----------------~~~~~~~~--~--~~~~~~~~~~~ 119 (268)
...++++|++||||||++.+|.... ...+ ...+.++ ........ . .-......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4468999999999999998886421 0000 0111111 00000000 0 00011123578
Q ss_pred EEEeCCCCCCch-hh---Hhhhcc-----CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 120 HLVDVPGHSRLR-PK---LDEFLP-----QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 120 ~i~DtpG~~~~~-~~---~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.++||||..... .. +..+++ ...-.++|+|++.. ...+....... . .--+-=++++|.|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---~~~~~~~~~~f-~------~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---YHHTLTVLKAY-E------SLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---HHHHHHHHHHh-c------CCCCCEEEEEcccCC
Confidence 999999975321 11 223332 13367899999987 23333333322 1 112335788999975
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 43
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00052 Score=60.13 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=46.8
Q ss_pred eeEEEEeCCCCCCchhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||+|...-... +..+ ....|.++||-.+--+.+++.++..+-..+..+.. +..-=-++++|+|..
T Consensus 467 fDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~---~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 467 FDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHST---PRLIDGILLTKFDTV 543 (587)
T ss_pred CCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCC---ccccceEEEEeccch
Confidence 78999999996543222 2222 35689999998887765667777666555554321 222234788999986
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
+
T Consensus 544 ~ 544 (587)
T KOG0781|consen 544 D 544 (587)
T ss_pred h
Confidence 5
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00088 Score=55.71 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccc-------------cceEEeec--c-------c-cc-CCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPN-------------EDTFVLHS--E-------S-TK-KGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~-------------~~~~~~~~--~-------~-~~-~~~ 115 (268)
+..+++++|++|+||||++..+...-... ....+..+. ...+.+.. . + .. ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44799999999999999998774321100 000111000 00011100 0 0 00 111
Q ss_pred eeeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 116 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+.++||||....... +..++ ...+-+++|+|++.. .+.+...+..+. .-.+-=++++|.|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---~~d~~~~~~~f~-------~~~~~~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFK-------DIHIDGIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---HHHHHHHHHHhC-------CCCCCEEEEEeecC
Confidence 268899999997643222 22232 235678999999865 344444444432 12233578899998
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 224 t~~ 226 (270)
T PRK06731 224 TAS 226 (270)
T ss_pred CCC
Confidence 654
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00051 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+.+.++++|-.|+||||-+-.|.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHH
Confidence 457889999999999999887763
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0019 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998653
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00071 Score=58.90 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=32.9
Q ss_pred eeEEEEeCCCCCCchhhHhh------hccCCCEEEEEEeCCCCCCCHHHHHHHHHHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDE------FLPQAAGIVFVVDALEFLPNCSAASEYLYDI 167 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~ 167 (268)
+.+.|+||+|.......+-. ..-+.|=+++|+|+.-+ +........+.+-
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-QdA~~~A~aF~e~ 238 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-QDAVNTAKAFNEA 238 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-hHHHHHHHHHhhh
Confidence 57899999997655443322 23457889999999988 3344444444443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=58.02 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCCCchh----hHhhhccCC--C-EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRP----KLDEFLPQA--A-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
+.+.++||+|...... ....++..+ + -.++|+|++.. ...+.+.+..... --+-=++++|.|-
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---~~~~~~~~~~~~~-------~~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---TSDVKEIFHQFSP-------FSYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---HHHHHHHHHHhcC-------CCCCEEEEEeccC
Confidence 6899999999654221 222333322 3 58899999987 3444444433321 1234578899997
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 325 t~~ 327 (388)
T PRK12723 325 TTC 327 (388)
T ss_pred CCc
Confidence 544
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0031 Score=43.28 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=56.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-HhhhccCCCEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIV 145 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-~~~~~~~~d~ii 145 (268)
+++.|..|+||||+...+...--..+... ... + .+.++|+++....... .......+|.++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v--------~~~------~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi 63 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV--------LLI------D----DYVLIDTPPGLGLLVLLCLLALLAADLVI 63 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE--------EEE------C----CEEEEeCCCCccchhhhhhhhhhhCCEEE
Confidence 67889999999999988764311000000 000 1 4689999987542221 245667899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 185 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n 185 (268)
++++.... +................ ....++.++.|
T Consensus 64 ~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~vv~N 99 (99)
T cd01983 64 IVTTPEAL--AVLGARRLTEVVLELAI--EGLRPVGVVVN 99 (99)
T ss_pred EecCCchh--hHHHHHHHHHHHHHhhc--cCCceEEEEeC
Confidence 99998875 35555444332222211 14555666655
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45799999999999999998764
|
|
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=52.43 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCC--cHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 63 KSTTIVLAGLSGS--GKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 63 ~~~~i~ivG~~~~--GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+-++++|.+|+ ||-+|+.+|....|......+.......+++....... .+.+.=.+-.+++.-........
T Consensus 3 ~rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysa----di~lcishicde~~lpn~~~a~p 78 (418)
T KOG4273|consen 3 GRPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSA----DINLCISHICDEKFLPNAEIAEP 78 (418)
T ss_pred CCceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeec----ceeEEeecccchhccCCcccccc
Confidence 3567899999999 99999999988877443222211111112222111111 12222222222211111122233
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
..++++|||.+.. ..+..+..|+.-. .. +..- ++.++||+|.++.. ..++.+..+.+
T Consensus 79 l~a~vmvfdlse~-s~l~alqdwl~ht----di--nsfdillcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 79 LQAFVMVFDLSEK-SGLDALQDWLPHT----DI--NSFDILLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred eeeEEEEEeccch-hhhHHHHhhcccc----cc--ccchhheecccccccccchhhhhHHHHHHHh
Confidence 5688999999997 6677777776422 11 2222 45679999998754 34555555543
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=44.94 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 67 IVLAG-LSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 67 i~ivG-~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+++.| ..|+||||+...+...--.. . ........+.. +.+.++|+|+... ......+..+|.++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~-------~~vl~~d~d~~-----~d~viiD~p~~~~--~~~~~~l~~ad~vi 66 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-G-------KRVLLIDLDPQ-----YDYIIIDTPPSLG--LLTRNALAAADLVL 66 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-C-------CcEEEEeCCCC-----CCEEEEeCcCCCC--HHHHHHHHHCCEEE
Confidence 55666 56999999877654311000 0 00011111101 4679999999753 33447778899999
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 024385 146 FVVDALEFLPNCSAASEYLY 165 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~ 165 (268)
++++.+.. ++......+.
T Consensus 67 v~~~~~~~--s~~~~~~~~~ 84 (104)
T cd02042 67 IPVQPSPL--DLDGLEKLLE 84 (104)
T ss_pred EeccCCHH--HHHHHHHHHH
Confidence 99988764 4666655554
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00037 Score=54.08 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|++++|+|+..+..+. ..+.+.+. +.. .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~~-----~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QAG-----GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hcc-----CCCCEEEEEehhhcCCH
Confidence 7899999998862222 22222211 221 56899999999999653
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0095 Score=46.13 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=44.9
Q ss_pred eEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.+.++|+|+... ......+..+|.+|++++++.. ++......+..+... ....+.+++|+.|-..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~~~~~-----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEIS--SLRDADRVKGLLEAL-----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcc--hHHHHHHHHHHHHHc-----CCceEEEEEeCCcccc
Confidence 589999998643 2345567889999999998874 466665554444331 2335678999998754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=53.46 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=62.5
Q ss_pred HHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------
Q 024385 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL------- 130 (268)
Q Consensus 58 ~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~------- 130 (268)
..+..+.+.++++|++|.|||++++++....... ..+.. ..+.+..+.+|...+.
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-----~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-----SDEDA-------------ERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-----CCCCC-------------ccccEEEEecCCCCChHHHHHHH
Confidence 3445678899999999999999999998765321 11110 1134555555543221
Q ss_pred -----------------hhhHhhhccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 131 -----------------RPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 131 -----------------~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.......++...+=+++||=-.. .-+.......+..+..-.+ .-++|+|.||++
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~vGt~ 189 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGVGTR 189 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEeccH
Confidence 12223456677788889885331 0123333333333322211 268999999874
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0074 Score=42.77 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=59.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCccc-c---cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQ-G---TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+-+..|+||||+...|...--.. + ......++. . ..+.++|+|+... ......+..+|.+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-----------~---~D~IIiDtpp~~~--~~~~~~l~~aD~v 68 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-----------G---DDYVVVDLGRSLD--EVSLAALDQADRV 68 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------C---CCEEEEeCCCCcC--HHHHHHHHHcCeE
Confidence 34567899999877664321100 0 111111111 1 1679999998653 3345577889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCC-CCcEEEEeec
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKK-KIPVLICCNK 186 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~piivv~nK 186 (268)
+++++.+.. ++......+..+.+... . ..++.+|+|+
T Consensus 69 lvvv~~~~~--s~~~~~~~~~~l~~~~~---~~~~~~~lVvNr 106 (106)
T cd03111 69 FLVTQQDLP--SIRNAKRLLELLRVLDY---SLPAKIELVLNR 106 (106)
T ss_pred EEEecCChH--HHHHHHHHHHHHHHcCC---CCcCceEEEecC
Confidence 999988874 56666666665554321 2 4567788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00046 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
|
... |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00072 Score=58.76 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...+++++|.+|+|||||+|.+.+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 45689999999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00047 Score=55.78 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...--|+++|++|||||||++-+.+-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355569999999999999999987643
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00064 Score=52.51 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00081 Score=57.68 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
.|...+...+..+|+||.|+|+.++.. ...++.+++... ..+...|+|+||+|+.+....+.....+.++..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 445556667788999999999999832 233444443221 156899999999999998888878777776555
Q ss_pred HH
Q 024385 208 KL 209 (268)
Q Consensus 208 ~~ 209 (268)
.+
T Consensus 208 tv 209 (435)
T KOG2484|consen 208 TV 209 (435)
T ss_pred cc
Confidence 43
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00094 Score=42.13 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
...+|.|+.|+||||++..+.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998865
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00075 Score=50.39 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 024385 67 IVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~ 86 (268)
|+++|++||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
|
... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00097 Score=52.82 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++||+|||||||++++-+-+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 466789999999999999999987644
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=53.95 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=49.4
Q ss_pred EEEeCCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 120 HLVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 120 ~i~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
.+-+.|||. ++.......+..+|+++-|+|+.++..+... .+..+. .+.|.++|+||+|+.+....+..
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~---~l~~~v-------~~k~~i~vlNK~DL~~~~~~~~W 82 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP---ELERIV-------KEKPKLLVLNKADLAPKEVTKKW 82 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc---cHHHHH-------ccCCcEEEEehhhcCCHHHHHHH
Confidence 455568875 4556677889999999999999998433222 233333 45566999999999876544444
Q ss_pred HHHH
Q 024385 199 RKQM 202 (268)
Q Consensus 199 ~~~l 202 (268)
.+.+
T Consensus 83 ~~~~ 86 (322)
T COG1161 83 KKYF 86 (322)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00093 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+|+|+|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++|+|||||++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999764
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00097 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.--++|+|++|||||||+|-+-+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456679999999999999999886543
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0034 Score=47.97 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+.++|.+|+|||||+.++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0015 Score=42.45 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0016 Score=48.30 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356689999999999999999888754
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0012 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0018 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0031 Score=48.85 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+..-+++.||+|+||||++++|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998765
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0035 Score=55.64 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=42.8
Q ss_pred hhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 136 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+.+..+|+||.++|+.++.= ....+..+..... ..+..++++||+||..........+.+.
T Consensus 170 RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------~~K~~~LLvNKaDLl~~~qr~aWa~YF~ 231 (562)
T KOG1424|consen 170 RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------PSKANVLLVNKADLLPPEQRVAWAEYFR 231 (562)
T ss_pred HHHhhcceEEEEeecCCccccCChhHHHHHhccc-------cccceEEEEehhhcCCHHHHHHHHHHHH
Confidence 46678999999999999721 1233444444332 5678899999999998776666666654
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0025 Score=46.73 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|++|+||||++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 45799999999999999999987543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0018 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..--++++||+|||||||++.+.+=.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44569999999999999999987643
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0036 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.+++.||+|||||||++.+..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 4667899999999999999998875
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0021 Score=47.91 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0018 Score=51.78 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0045 Score=51.38 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=41.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccceeec-cccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVTSME-PNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
.+-.-|.|+|+..+|||.|+|+|.+.. |.. ..+.. .+.|.+.... ....+..+.+.+.||.|..+
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~--~~~~~~~T~Giw~w~~-~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSW--GPTVEPCTKGIWMWSE-PLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSES--SSCSSST-SCEEEECC-E-TTSTCEEEEEEEEECBTT
T ss_pred CCEEEEEeecCCccchHHHHHHHhcccccccc--cCCCCCCCcceeeeec-ccccccceeEEEecchhccc
Confidence 345568999999999999999998642 211 12222 2334443332 23345557899999999866
|
GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0021 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+..-++|+|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566889999999999999999754
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0027 Score=44.87 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
....++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44579999999999999999976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0027 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.+.|+|++|+|||||+|-+.+=.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 356689999999999999999887643
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0026 Score=49.97 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|||||||++.|...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999664
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0029 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4677899999999999999998753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+++|+|++|||||||++.|...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0024 Score=46.72 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0025 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||+|-+.+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhc
Confidence 4566799999999999999998765
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0028 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.003 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
..+|+|+|+|||||||+.+.|.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999885
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0031 Score=49.60 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++|+|||||++.+.+-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0027 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
|
... |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.003 Score=48.86 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+.|+|++|||||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4557899999999999999998754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0032 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=20.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-.+++||+|||||||++.|-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3455679999999999999988743
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0086 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++||||||+++.+...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhhh
Confidence 35789999999999999999999764
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0029 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..++|++.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4678999999999999999999863
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0037 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999988753
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0029 Score=50.66 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0036 Score=48.77 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|||||||++.|...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 35899999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0037 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..--++++||.|||||||++.+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566789999999999999999876
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0036 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999998753
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0052 Score=53.01 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+|+|+|++|||||||++.|...
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 47788999999999999999999865
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0033 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0029 Score=50.17 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+++|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0074 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++|+|+++||||++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999998754
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.04 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.017 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|.|+|++|||||||++.|.+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999998764
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.004 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+++++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0041 Score=49.56 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...++++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5567999999999999999998764
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0043 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+..-|+++|++|||||||+++|....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45568999999999999999998753
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0094 Score=43.97 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999999999999999988653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0047 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998753
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0036 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-++++|++||||||+++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999987654
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++||||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 268 | ||||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 6e-24 | ||
| 1nrj_B | 218 | Signal Recognition Particle Receptor Beta-Subunit I | 3e-11 | ||
| 2ged_A | 193 | Signal Recognition Particle Receptor Beta-subunit I | 3e-10 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-08 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 5e-08 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 5e-08 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 7e-07 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 7e-06 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 2e-05 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-05 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-04 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 3e-04 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-04 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-04 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 3e-04 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 4e-04 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 4e-04 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 4e-04 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 4e-04 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 4e-04 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 5e-04 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 7e-04 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 7e-04 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 8e-04 |
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In Complex With The Srx Domain From The Alpha-Subunit Length = 218 | Back alignment and structure |
|
| >pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In Nucleotide-free Dimerized Form Length = 193 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 8e-66
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 10/209 (4%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R+ ++ GL SGKT+LF +L G ++ T TS+ + + +++ +
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNNRGNS-----L 56
Query: 120 HLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 57 TLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116
Query: 179 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA---DVTNDFTLGIPGQAFS 235
+LI CNK D A + + I++Q+EKE++ LR +RSA T LG G+ F
Sbjct: 117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE 176
Query: 236 FSQCHNKVSVAEASGLTGEISQVEQFIRE 264
FSQ KV E S G I++
Sbjct: 177 FSQLPLKVEFLECSAKGGRGDTGSADIQD 205
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-65
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
++ +I++AG SGKT L L S TV S EP V
Sbjct: 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLS---------AADYDGSGV 57
Query: 120 HLVDVPGHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVV 174
LVD PGH +LR KL ++L A G++F+VD+ + +E+L DIL+ +
Sbjct: 58 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117
Query: 175 KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV---------SEADVTNDF 225
+ I +LI CNK++ TA I+ +E EI K+ R E N
Sbjct: 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 177
Query: 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266
+ F F+ V E S +ISQ ++I E++
Sbjct: 178 DVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 9e-50
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
+I++AG SGKT L L S TV S EP V
Sbjct: 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLS---------AADYDGSGV 93
Query: 120 HLVDVPGHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVV 174
LVD PGH +LR KL ++L A G++F+VD+ + +E+L DIL+ +
Sbjct: 94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 153
Query: 175 KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213
+ I +LI CNK++ TA I+ +E EI K+ R
Sbjct: 154 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 1e-18
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFV---- 105
+ + R+ + IV G SGKT + G + S+ ++ +
Sbjct: 2 SMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDF 61
Query: 106 --LHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEY 163
L K K + HL VPG L GIVFV D+ A +E
Sbjct: 62 LPLDIGEVKGFKTR-FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP--NRLRANAES 118
Query: 164 LYDILTNSTVVK---KKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ ++ N +P++I NK D A E +R ++
Sbjct: 119 MRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-12
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK 113
+L + K ++ GL +GKT L + L++ + +++P T+ SE
Sbjct: 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP---TWHPTSEELAI 64
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNS 171
G IK D+ GH + R ++ P+ GIVF+VDA E A L + +
Sbjct: 65 GNIK-FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFD---EARVELDALFNIA 120
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ K +P +I NK D A ++ +R +
Sbjct: 121 EL--KDVPFVILGNKIDAPNAVSEAELRSALG 150
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-12
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK 113
+L + KK+ +V GL +GKT L + L+D Q V ++ P SE
Sbjct: 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-------SEELTI 66
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNS 171
+ D+ GH + R +LP GIVF+VD E L L ++T+
Sbjct: 67 AGMT-FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE---LDSLMTDE 122
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202
T+ +P+LI NK D+ A ++E +R+
Sbjct: 123 TI--ANVPILILGNKIDRPEAISEERLREMF 151
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 9e-12
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 61 RKKSTTIVLAGLSGSGKT----VLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
+ I+L GL SGK+ V+F+++ T T + +D + +
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST-NKIYKDDI------SNSSFV 69
Query: 117 KPVHLVDVPGHSRLRPK---LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 173
+ D PG + +++V+DA + A L+ ++ +
Sbjct: 70 N-FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME---ALTRLHITVSKAYK 125
Query: 174 VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206
V + + +K D ++ K ++ + +
Sbjct: 126 VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 12/152 (7%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST 111
L + + +++ GL +GKT + YQ V P T + E
Sbjct: 4 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNE-----VVHTSP---TIGSNVEEI 55
Query: 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 171
+ + D+ G LR + + ++ VVD+ + E LY +L +
Sbjct: 56 VINNTR-FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE-LYKMLAHE 113
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ +K +LI NK D T I + ++
Sbjct: 114 DL--RKAGLLIFANKQDVKECMTVAEISQFLK 143
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK 113
+ +++ K I++ GL G+GKT + Y+L+ G V + +P T + E+
Sbjct: 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGE-----VVTTKP---TIGFNVETLSY 59
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 173
+K +++ D+ G + +RP + A ++FVVD+ + +A+ E L+ +L +
Sbjct: 60 KNLK-LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE-LHLMLQEEEL 117
Query: 174 VKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ +L+ NK D+ A + + K++
Sbjct: 118 --QDAALLVFANKQDQPGALSASEVSKELN 145
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-11
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 47 LLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVL 106
+L L + + +++ GL +GKT + Y+L G V + P T +
Sbjct: 5 AWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGD-----VVTTVP---TVGV 56
Query: 107 HSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYD 166
+ E+ + I + D+ G + +RP + +++VVD+ + A E LY
Sbjct: 57 NLETLQYKNIS-FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHE-LYA 114
Query: 167 ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+L + +K +LI NK D A ++ I +Q+
Sbjct: 115 LLDEDEL--RKSLLLIFANKQDLPDAASEAEIAEQLG 149
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 8/144 (5%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R K ++ GL SGKT + +L+ + + P T E K +
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL---P---TIGFSIEKFKSSSLS-F 69
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
+ D+ G R R + + + I+FV+D+ + L A E L +L + + ++IP
Sbjct: 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEE-LDTLLNHPDIKHRRIP 128
Query: 180 VLICCNKTDKVTAHTKEFIRKQME 203
+L NK D A T + + +
Sbjct: 129 ILFFANKMDLRDAVTSVKVSQLLC 152
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-11
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R + +++ GL +GKT + YQ T ++ N + I
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI----------VINNT 65
Query: 120 HLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 177
+ D+ G LR + + ++ VVD+ + E LY +L + + +K
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE-LYKMLAHEDL--RK 122
Query: 178 IPVLICCNKTDKVTAHTKEFIRKQME 203
+LI NK D T I + ++
Sbjct: 123 AGLLIFANKQDVKECMTVAEISQFLK 148
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK 113
+L ++ ++++ +++ GL +GKT + + + V ++ P T + ++ +
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKF-----NGEDVDTISP---TLGFNIKTLEH 59
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 173
K +++ DV G LR + G+++VVD+ + E L +L +
Sbjct: 60 RGFK-LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE-LQSLLVEERL 117
Query: 174 VKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+LI NK D A + I++ +E
Sbjct: 118 --AGATLLIFANKQDLPGALSCNAIQEALE 145
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG 114
L KK I++ GL +GKT + Y+L G + + P T + E+ +
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKL-----KLGEIVTTIP---TIGFNVETVEYK 71
Query: 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174
I + DV G ++RP + G++FVVD+ + +A E L +L +
Sbjct: 72 NIC-FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADE-LQKMLQEDEL- 128
Query: 175 KKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ +L+ NK D A + ++
Sbjct: 129 -RDAVLLVFANKQDMPNAMPVSELTDKLG 156
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-10
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 55 LLQVFRR-----KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
LL + R+ + I+L GL +GKT L QL ++ + P T + +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL-----ASEDISHITP---TQGFNIK 53
Query: 110 STKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 169
S + K +++ D+ G ++RP + +++V+D+ + E L ++L
Sbjct: 54 SVQSQGFK-LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE-LTELLE 111
Query: 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ +PVLI NK D +TA I + +
Sbjct: 112 EEKL--SCVPVLIFANKQDLLTAAPASEIAEGLN 143
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-10
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST 111
L K+ + L GL SGKT + G ++ + P T +
Sbjct: 10 HSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI----P---TVGFNMRKI 62
Query: 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 171
KG + + L D+ G R R + + + IV++VDA + ++ +E L+++L
Sbjct: 63 TKGNVT-IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE-LHNLLDKP 120
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ + IPVL+ NK D A ++ + ++M
Sbjct: 121 QL--QGIPVLVLGNKRDLPGALDEKELIEKMN 150
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 5e-10
Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 19/152 (12%)
Query: 67 IVLAGLSGSGKT----VLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV 122
++L G SGSGK+ ++F T + T ++ T ++L
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGAT-IDVEHSHLRFLGNMT-------LNLW 57
Query: 123 DVPGHSR-----LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 177
D G + D ++ V D E L
Sbjct: 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES--TEVLKDIEIFAKALKQLRKYSPD 115
Query: 178 IPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209
+ + +K D V +E + + M K + +
Sbjct: 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 6e-10
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV------H 120
++L G+ GK+ + V DT L EST ++
Sbjct: 2 VLLMGVRRCGKS----------SICKVVFHNMQPLDTLYL--ESTSNPSLEHFSTLIDLA 49
Query: 121 LVDVPGHSRLR---PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 177
++++PG + +V+V+D+ + N A L I+ + V
Sbjct: 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYIN---AITNLAMIIEYAYKVNPS 106
Query: 178 IPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
I + + +K D ++ K ++ + + +
Sbjct: 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGE 137
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-10
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
+ I++ GL G+GKT + Y+L+ G V + P T + E+ +K +
Sbjct: 5 TREMRILILGLDGAGKTTILYRLQVGE-----VVTTIP---TIGFNVETVTYKNLK-FQV 55
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ G + +RP + +++VVD+ + + SE L +L + +K ++
Sbjct: 56 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE-LVAMLEEEEL--RKAILV 112
Query: 182 ICCNKTDKVTAHTKEFIRKQME 203
+ NK D A T + +
Sbjct: 113 VFANKQDMEQAMTSSEMANSLG 134
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-09
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L G + + P T + E+ + I + DV G
Sbjct: 3 ILMVGLDAAGKTTILYKL-----KLGEIVTTIP---TIGFNVETVEYKNIS-FTVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD+ + A E L +L + + +L+ NK
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE-LMRMLAEDEL--RDAVLLVFANK 110
Query: 187 TDKVTAHTKEFIRKQME 203
D A I ++
Sbjct: 111 QDLPNAMNAAEITDKLG 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-09
Identities = 46/290 (15%), Positives = 84/290 (28%), Gaps = 87/290 (30%)
Query: 4 FVMWKL-PEGMEQWKKELEE-------WLNRGIEFINQIP--PTQLYIAC---------- 43
+ W L + E +K +EE +L I+ + P T++YI
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 44 ----------AVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQ-LRDGSTHQ- 91
L L ALL L + + +++ G+ GSGKT +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 92 ----------GTVTS----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDE 136
S +E + L + + H ++ ++ +L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 137 FLPQAAG----IVF-------VVDALEFLPNC----SAASEYLYDILTNSTVVKKKIPVL 181
L +V +A F +C + + + D L+ +T I +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATT--THISL- 291
Query: 182 ICCNKTDKV--TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGI 229
+ K + K ++ L E TN L I
Sbjct: 292 ---DHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPRRLSI 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 7e-07
Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 70/255 (27%)
Query: 14 EQWKKELEEWLNRGIE-FINQIPPT---QLYIACAVL----LLTTALLLLL--------- 56
+ WK + L IE +N + P +++ +V + T LL L+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 57 -----------QVFRRKKSTTIVLAGL------SGSGKTVL------FYQLRDGSTHQGT 93
V ++ K +TI + + + L Y +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 94 VTSMEPNEDTFVL-----H---SESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQAAGI 144
+ P D + H E ++ + + +D R L K+
Sbjct: 465 IP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNAS 517
Query: 145 VFVVDALE--------FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AH 193
+++ L+ N + IL + K LIC TD +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDLLRIALMA 574
Query: 194 TKEFIRKQMEKEIDK 208
E I ++ K++ +
Sbjct: 575 EDEAIFEEAHKQVQR 589
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 121 LVDVPG-HSRLRPKLDEFLPQAAG--------IVFVVDALEFLPNCSAASEYLYDILTNS 171
VD PG H + ++ + +AA ++FVV+ + P E + + L
Sbjct: 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP----DDEMVLNKLREG 115
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211
K PV++ NK D V + + + L +
Sbjct: 116 -----KAPVILAVNKVDNVQE------KADLLPHLQFLAS 144
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 24/151 (15%)
Query: 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP----NEDTFVLHSESTKKG 114
KK I++ GL +GKT + Y+L G + + P N +T
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETV---------- 204
Query: 115 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNST 172
+ K + DV G ++RP + G++FVVD+ + A E L +L
Sbjct: 205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE-LMRMLAEDE 263
Query: 173 VVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203
+ + +L+ NK D A I ++
Sbjct: 264 L--RDAVLLVFANKQDLPNAMNAAEITDKLG 292
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV-- 122
+ L G +GKT L QL + + ++K
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D G + F+ +++ + ++D+ S +L I K PV++
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVIV 155
Query: 183 CCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223
NK D+ + +K++ + + +S +
Sbjct: 156 VMNKIDEN--PSYNIEQKKINERFPAIENRFHRISCKNGDG 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.96 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.96 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.96 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.96 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.96 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.96 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.96 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.95 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.95 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.95 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.95 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.95 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.95 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.95 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.95 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.95 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.95 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.95 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.95 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.95 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.95 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.95 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.95 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.95 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.95 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.95 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.95 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.95 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.95 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.95 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.95 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.95 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.94 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.94 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.94 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.94 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.94 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.94 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.94 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.94 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.94 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.94 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.94 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.94 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.94 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.94 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.94 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.94 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.94 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.94 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.94 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.94 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.94 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.94 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.94 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.94 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.94 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.94 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.94 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.94 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.94 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.94 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.94 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.94 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.94 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.94 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.94 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.94 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.94 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.94 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.94 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.94 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.94 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.94 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.94 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.94 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.94 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.94 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.94 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.94 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.94 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.94 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.94 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.94 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.94 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.93 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.93 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.93 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.93 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.93 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.93 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.93 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.92 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.92 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.92 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.92 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.86 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.92 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.91 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.91 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.91 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.91 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.91 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.91 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.91 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.91 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.91 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.9 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.9 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.89 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.89 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.89 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.89 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.89 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.88 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.88 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.88 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.88 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.88 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.88 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.87 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.87 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.87 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.87 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.87 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.87 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.86 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.86 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.86 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.86 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.86 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.86 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.86 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.85 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.85 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.85 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.85 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.85 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.84 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.84 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.84 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.84 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.83 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.83 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.83 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.83 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.83 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.82 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.82 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.82 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.82 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.81 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.81 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.81 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.81 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.79 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.79 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.78 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.78 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.78 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.77 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.77 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.76 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.76 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.76 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.75 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.74 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.74 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.73 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.73 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.73 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.72 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.71 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.69 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.69 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.68 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.67 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.67 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.66 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.65 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.65 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.65 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.64 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.63 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.62 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.62 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.61 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.6 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.57 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.55 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.55 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.53 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.52 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.47 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.45 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.45 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.44 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.44 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.26 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.2 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.15 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.0 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.99 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.94 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.88 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.88 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.8 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.69 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.64 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.48 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.44 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.39 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.38 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.23 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.22 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.19 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.1 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.04 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.02 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.93 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.68 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.62 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.59 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.55 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.5 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.49 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.36 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.31 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.26 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.22 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.18 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.09 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.09 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.09 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.03 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.0 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.97 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.94 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.94 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.91 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.82 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.8 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.78 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.75 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.75 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.74 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.72 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 96.72 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.71 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.71 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.64 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.62 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.58 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.53 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.52 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.49 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.46 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.44 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.43 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.41 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.41 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.41 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.39 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.39 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.39 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.36 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.35 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.35 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 96.33 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.33 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.33 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.33 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.33 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.33 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.33 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.31 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.31 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.3 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.29 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.29 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.28 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.28 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.26 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.26 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.26 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.24 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.23 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.22 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.22 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.22 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.21 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.21 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.21 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.2 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.2 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.19 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.18 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.18 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.17 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.17 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.16 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.16 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.15 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.13 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.12 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.12 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.1 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.1 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.06 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.06 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.06 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.04 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.03 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.02 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.0 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 95.99 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.99 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.98 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.97 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.97 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.95 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.95 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 95.95 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 95.92 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.91 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.91 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.9 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.9 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.9 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.89 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.88 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.85 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.85 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.85 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 95.84 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.84 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.83 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.83 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.82 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.8 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 95.8 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 95.8 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.79 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.79 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.79 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.79 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.78 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.77 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 95.77 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.74 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.72 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.71 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 95.7 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.68 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.67 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.63 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.62 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.61 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.6 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.6 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 95.6 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.59 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.59 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.58 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.55 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.54 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.54 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.53 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.52 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.51 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.48 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.48 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.46 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 95.46 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.45 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.44 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.43 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.42 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.4 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 95.4 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.38 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.38 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.37 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.36 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.33 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.33 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.29 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 95.28 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.28 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.27 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.26 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.25 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.24 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.22 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.22 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.21 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.14 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.1 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.09 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.09 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.07 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.06 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.03 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.02 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.01 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.98 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.93 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 94.91 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.85 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.79 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.79 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 94.76 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.74 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 94.71 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 94.71 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.71 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.67 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.67 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.67 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 94.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.65 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.63 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.62 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 94.58 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 94.55 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 94.54 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.52 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.51 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 94.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.43 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 94.39 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.38 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 94.38 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.37 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 94.34 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.32 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.3 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.27 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.27 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.26 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.26 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.25 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.24 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.22 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.2 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.19 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.18 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.16 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 94.15 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.11 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.1 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.09 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.04 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.02 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.99 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 93.98 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 93.97 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.9 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.87 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 93.81 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.8 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 93.78 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 93.76 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.71 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.66 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.66 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 93.65 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 93.64 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.62 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.6 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 93.59 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-31 Score=211.54 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=124.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+||+++|++|||||||+++++.+.|...+.+|+. ..........++..+.+.||||+|+++|+..+..|++.+
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig----~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a 86 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG----IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDS 86 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTC
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc----eEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccc
Confidence 4678999999999999999999999998665544443 223333455677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++++|||.++. +++..+..|+..+..... .++|++||+||+|+...+ ..++..+. .+
T Consensus 87 ~~~ilv~di~~~-~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~~~r~V~~~e~~~~-a~--------------- 146 (216)
T 4dkx_A 87 AAAVVVYDITNV-NSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLADKRQVSIEEGERK-AK--------------- 146 (216)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCGGGCCSCHHHHHHH-HH---------------
T ss_pred cEEEEEeecchh-HHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchHhcCcccHHHHhhH-HH---------------
Confidence 999999999998 899999999999877543 789999999999997654 33332222 11
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.|++|||++|. |++++++|.+.++
T Consensus 147 --------------------~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 --------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp --------------------HHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred --------------------HhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 224589999999999 9999999987653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=201.76 Aligned_cols=198 Identities=34% Similarity=0.545 Sum_probs=137.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc-eeeEEEEeCCCCCCchh-hHhhhcc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK-IKPVHLVDVPGHSRLRP-KLDEFLP 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~-~~~~~~~ 139 (268)
.+.++|+++|++|||||||+++++++.+...+.+ .. . .... +.+++. .+.+.+|||||+++++. .+..|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~---~-~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-IT---D-SSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CS---C-EEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cc---e-eeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 5678999999999999999999999887543321 11 1 1111 233332 37899999999999888 7888999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSE 218 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~ 218 (268)
.+|++|+|+|+++...++.....++..++........+.|+++|+||+|+......+.+.+.+.+.+..+..... +++.
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 999999999998842245666677766654321123579999999999999888888888888888776544332 2333
Q ss_pred ccccCc--ccCCCCCCCeeeccCCceeEEEEeeeccC------C-chhHHHHHHhhc
Q 024385 219 ADVTND--FTLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~--~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~~~ 266 (268)
.+.... ...+..+..|.|++++.+++|++|||++| . ++++++||.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 222222 23444556777877777899999999999 7 999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=189.95 Aligned_cols=164 Identities=22% Similarity=0.351 Sum_probs=122.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.++..+|+++|++|||||||++++.++.+. .+.++....... +..++ +.+.+|||||+++++..+..+++.
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~------~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 83 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEE------IVINN--TRFLMWDIGGQESLRSSWNTYYTN 83 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEE------EEETT--EEEEEEECCC----CGGGHHHHTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEE------EEECC--EEEEEEECCCCHhHHHHHHHHhcC
Confidence 467899999999999999999999988764 222332222111 22233 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. +++.....|+..+..... ..+.|+++|+||+|+......+++.+.+... .
T Consensus 84 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--------~------ 146 (187)
T 1zj6_A 84 TEFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT--------S------ 146 (187)
T ss_dssp CCEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--------G------
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHhchh--hCCCeEEEEEECCCCcCCCCHHHHHHHhChh--------h------
Confidence 9999999999998 789999999999887532 2689999999999998765555443332210 0
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ...++++++|||++|+ ++++++||.+.++
T Consensus 147 ---------------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 147 ---------------I--KDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp ---------------C--CSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ---------------h--cCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0 0234689999999998 9999999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=192.05 Aligned_cols=173 Identities=27% Similarity=0.404 Sum_probs=119.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+... .+.+++ +.+.+|||||+++++..+..+++.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~------~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE------ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE------EEEETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCceeE------EEEECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence 467899999999999999999999887642 3333333322 223344 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. +++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . . .....
T Consensus 94 d~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~----~-~~~~~- 160 (198)
T 1f6b_A 94 NGIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGL----Y----G-QTTGK- 160 (198)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTC----T----T-TCCCS-
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEEECCCccccCCHHHHHHHhCc----c----c-ccccc-
Confidence 999999999997 789999999999887532 268999999999999865455444332211 0 0 00000
Q ss_pred cCcccCCCCCCCeeecc-CCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+.. ....+++++|||++|+ ++++++||.+.+
T Consensus 161 --------~--~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 161 --------G--SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp --------S--CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred --------c--ccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 000000 1245789999999998 999999998875
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=186.38 Aligned_cols=163 Identities=21% Similarity=0.353 Sum_probs=124.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. .. ++.+... ..+.+++ ..+.+|||||++++...+..+++.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~----~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TI----PTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNT 75 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC----CCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cC----CcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccC
Confidence 457899999999999999999999887642 22 2222111 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++..... .+.|+++|+||+|+......+++.+.+...
T Consensus 76 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 136 (171)
T 1upt_A 76 DAVIYVVDSCDR-DRIGISKSELVAMLEEEEL--RKAILVVFANKQDMEQAMTSSEMANSLGLP---------------- 136 (171)
T ss_dssp SEEEEEEETTCC-TTHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTCCCHHHHHHHHTGG----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhchhh--CCCEEEEEEECCCCcCCCCHHHHHHHhCch----------------
Confidence 999999999998 7899999999888775321 689999999999998766554443322100
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ...+++++++||++|+ +++++++|.+.++
T Consensus 137 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 137 --------------AL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp --------------GC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999988753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=188.21 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=123.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+.. ..+..++ +.+.+|||||+++++..+..+++.+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~------~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS------EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV 91 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEE------EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCe------EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 466799999999999999999999987642 223333221 2233344 7899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. ..
T Consensus 92 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----------~~---- 153 (190)
T 1m2o_B 92 NGIVFLVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL-----------LN---- 153 (190)
T ss_dssp CEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTC-----------SS----
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHHHHcchh--hcCCCEEEEEECCCCcCCCCHHHHHHHhCC-----------cc----
Confidence 999999999998 789999999998886532 268999999999999875454443322210 00
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+. + .....+++++|||++|+ ++++++||.+++
T Consensus 154 -------~~~~~~-~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 154 -------TTGSQR-I-EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -------CCC----C-CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -------cccccc-c-cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 000000 1 11345789999999998 999999998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=190.24 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=124.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccc-ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
....++|+++|++|||||||+++|.++.+.. .+.++ .+..... +. +..+.+.+|||||++++...+..+++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t----~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT----VGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC----SSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc----cceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 3567899999999999999999999988754 22333 2211111 12 23378999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc-----CCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-----KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+|++|+|+|+++. .++..+..|+..++...... ..+.|+++|+||+|+......+++.+.+... .+
T Consensus 86 ~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~----- 157 (199)
T 4bas_A 86 NIDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT--TL----- 157 (199)
T ss_dssp TCSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH--HH-----
T ss_pred cCCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch--hh-----
Confidence 99999999999997 78999999999987752110 1388999999999998876665555444311 00
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ....+++++|||++|+ +++++++|.+.+
T Consensus 158 ----------------------~-~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 158 ----------------------M-GDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp ----------------------H-TTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------c-cCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 0 0245789999999998 999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=185.51 Aligned_cols=160 Identities=22% Similarity=0.377 Sum_probs=119.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|||||||++++.++.+.. ..++..... ..+...+ +.+.+|||||+++++..+..+++.+|++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~------~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV------ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE------EEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE------EEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEE
Confidence 489999999999999999999887643 222222111 1122223 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|++++ +++.....|+..+..... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 72 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~----------------- 129 (164)
T 1r8s_A 72 IFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL--H----------------- 129 (164)
T ss_dssp EEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G-----------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhchh--hcCCeEEEEEECcCCcCCCCHHHHHHHhCc--c-----------------
Confidence 999999997 789999999988876532 268999999999999776544333222110 0
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|. +++++++|.+.++
T Consensus 130 -----------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 -----------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp -----------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -----------cc-cCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999998764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=188.02 Aligned_cols=163 Identities=22% Similarity=0.372 Sum_probs=122.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+. ...++.+.... .+..++ +.+.+|||||++.++..+..+++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQGFNIK--SVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETTEEEE--EEEETT--EEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCCeEEE--EEEECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999987652 22233332111 122333 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 85 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~-------------- 145 (181)
T 1fzq_A 85 DILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNL--H-------------- 145 (181)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcCcccCCCHHHHHHHhCc--h--------------
Confidence 999999999997 789999999988876432 268999999999999876554433222110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ....+++++|||++|+ ++++++||.+.+.
T Consensus 146 --------------~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 146 --------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred --------------hc-cCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 0235689999999999 9999999988764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=186.71 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||+++|.++.+ ....++...... .+..++ +.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~------~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE------EIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE------EEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE------EEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 5678999999999999999999999887 222222222211 122234 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 90 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~-------------- 150 (181)
T 2h17_A 90 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKL--T-------------- 150 (181)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hCCCeEEEEEECCCcccCCCHHHHHHHhCc--c--------------
Confidence 999999999997 789999999998886532 268999999999999876555443332210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ....++++++|||++|+ +++++++|.+.+
T Consensus 151 --------------~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 151 --------------S-IKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp --------------G-CCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred --------------c-ccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 0 00234689999999998 999999998753
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=190.39 Aligned_cols=164 Identities=21% Similarity=0.331 Sum_probs=119.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+.. . .|+.+... ..+...+ +.+.+|||||+++++..+..+++.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~----~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNV--ETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-E----EEETTEEE--EEEEETT--EEEEEEECC-----CTTHHHHHHT
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-c----CCcCceeE--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 4678999999999999999999999887642 2 22222111 1122233 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 97 ~d~iilv~D~~~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--------------- 158 (192)
T 2b6h_A 97 TQGLIFVVDSNDR-ERVQESADELQKMLQEDE--LRDAVLLVFANKQDMPNAMPVSELTDKLGLQ--------------- 158 (192)
T ss_dssp CCEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTGG---------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHhcccc--cCCCeEEEEEECCCCCCCCCHHHHHHHhCcc---------------
Confidence 9999999999997 789999999998876532 2589999999999997765544332221100
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|+ +++++++|.+.+.
T Consensus 159 ---------------~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 ---------------HL-RSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ---------------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ---------------cc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=189.58 Aligned_cols=164 Identities=24% Similarity=0.309 Sum_probs=124.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|||||||+++|.++.+.....++..... .. +... .+.+.+|||||++++...+..+++.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE----EE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE----EE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccC
Confidence 4578999999999999999999999887543333332221 11 1222 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 92 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~--------- 152 (188)
T 1zd9_A 92 SAIVYMVDAADQ-EKIEASKNELHNLLDKPQ--LQGIPVLVLGNKRDLPGALDEKELIEKMNL-------S--------- 152 (188)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G---------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCCEEEEEECCCCccCCCHHHHHHHhCh-------h---------
Confidence 999999999997 789999999998876532 268999999999999876544333222110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|+ +++++++|.+.+.
T Consensus 153 --------------~~-~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 --------------AI-QDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred --------------hh-ccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 0235689999999998 9999999998764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=188.75 Aligned_cols=162 Identities=19% Similarity=0.309 Sum_probs=122.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++. .....++... .. ..+..++ +.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~----~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF----NI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE----EE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc----ce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC
Confidence 578999999999999999999999877 3323333221 11 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 87 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~-------------- 147 (186)
T 1ksh_A 87 DGLIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL--D-------------- 147 (186)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHhChh--cCCCcEEEEEeCccCCCCCCHHHHHHHhCh--h--------------
Confidence 999999999997 789999999988887532 268999999999999876555443322110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ...++++++|||++|+ +++++++|.+.+
T Consensus 148 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 --------------SI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0235689999999998 999999998765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=187.50 Aligned_cols=165 Identities=20% Similarity=0.364 Sum_probs=123.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||+++|.++. +..... ++.+.. ...+..++ +.+.+|||||++++...+..+++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC----CCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC----Ccccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 567899999999999999999999876 332222 222211 12233344 689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. .++.....|+..+.........+.|+++|+||+|+......+++.+.+.
T Consensus 91 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----------------- 152 (190)
T 2h57_A 91 GQAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC----------------- 152 (190)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-----------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-----------------
Confidence 9999999999997 7788888999988875431125789999999999987655554443321
Q ss_pred ccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+ ..++++++|||++|+ +++++++|.+.+.
T Consensus 153 ---------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 ---------------LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ---------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ---------------hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0001 235689999999998 9999999988764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=187.96 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=122.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|+++|++|||||||++++.++.+.....+ +.+..........++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 78 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP----TIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQA 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC----CSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcE
Confidence 46899999999999999999998876443322 22222222334445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|++++ .++.....|+..+..... .+.|+++|+||+|+.......++. +...+..+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~--------------- 139 (170)
T 1ek0_A 79 ALVVYDVTKP-QSFIKARHWVKELHEQAS---KDIIIALVGNKIDXLQEGGERKVAREEGEKLAE--------------- 139 (170)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH---------------
T ss_pred EEEEEecCCh-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCccccccccCCCHHHHHHHHH---------------
Confidence 9999999997 778888888888876532 689999999999997642111111 11111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 140 -----------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp -----------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=186.26 Aligned_cols=162 Identities=24% Similarity=0.380 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+ . ...++.+... ..+..++ ..+.+|||||+++++..+..+++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~----~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-V----TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-E----EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-C----ccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 5789999999999999999999998765 1 2223332111 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+......+++.+.+..
T Consensus 87 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~----------------- 146 (183)
T 1moz_A 87 AAVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL----------------- 146 (183)
T ss_dssp EEEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT-----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHcChh--hCCCeEEEEEECCCCCCCCCHHHHHHHhCc-----------------
Confidence 999999999997 789999999998877532 268999999999999876554443322110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ......+++++|||++|+ ++++++||.+.+
T Consensus 147 ------~--------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 147 ------V--------ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ------T--------TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ------c--------cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 000234689999999998 999999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=182.84 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+...+.++ .+ ..+......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 76 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----SE-EEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----cc-ceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCC
Confidence 3578999999999999999999998764433322 22 122233445666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+....
T Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------------- 137 (167)
T 1c1y_A 77 GFALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---------------- 137 (167)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCcEEEEEECccccccccCCHHHHHHHHHH----------------
Confidence 99999999997 778888888877766432 26899999999999975432 2222211110
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 -------------------WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp -------------------TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------ccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 124589999999998 999999998865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=183.18 Aligned_cols=162 Identities=16% Similarity=0.196 Sum_probs=123.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.++.+.....++ .+..........++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST----IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA 79 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC----SSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC
Confidence 35679999999999999999999988764433222 22222222234455567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++.....|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 80 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (170)
T 1r2q_A 80 QAAIVVYDITNE-ESFARAKNWVKELQRQAS---PNIVIALSGNKADLANKRAVDFQEAQSYAD---------------- 139 (170)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888888876532 6899999999999975432 222221111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 140 --------------------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 --------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123579999999998 9999999998875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=185.95 Aligned_cols=162 Identities=21% Similarity=0.350 Sum_probs=122.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++..+|+++|++|||||||++++..+.+.. ..|+.+.... .+..++ +.+.+|||||+++++..+..+++.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 90 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-----TVPTVGVNLE--TLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDT 90 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-----ECSSTTCCEE--EEEETT--EEEEEEEECCSSSSCCCCSSSSTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-----cCCCCceEEE--EEEECC--EEEEEEECCCCHhHHHHHHHHhhcC
Confidence 578999999999999999999998877632 2233221111 122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|++++ +++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 91 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 151 (189)
T 2x77_A 91 DAVIYVVDSTDR-DRMGVAKHELYALLDEDE--LRKSLLLIFANKQDLPDAASEAEIAEQLGVS---------------- 151 (189)
T ss_dssp CEEEEEEETTCC-TTHHHHHHHHHHHHTCST--TTTCEEEEEEECTTSTTCCCHHHHHHHTTGG----------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhhhh--cCCCeEEEEEECCCCcCCCCHHHHHHHhChh----------------
Confidence 999999999998 789999999988887532 2689999999999998765544333221100
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ...++++++|||++|+ +++++++|.+.+
T Consensus 152 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 --------------SI-MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00 0234689999999998 999999998765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=183.34 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=124.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++.++.+.....++.... .........+..+.+.+|||||++++...+..+++.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA----FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS----EEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE----EEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 456899999999999999999999988754333333222 1122233455557899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++.....|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (181)
T 2efe_B 86 AAAIIVFDVTNQ-ASFERAKKWVQELQAQGN---PNMVMALAGNKSDLLDARKVTAEDAQTYAQ---------------- 145 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccccCCHHHHHHHHH----------------
Confidence 999999999997 778888899888877532 6899999999999975432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 --------------------ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp --------------------HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123579999999998 9999999998764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=185.56 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=123.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.++.+.....++ .+...........+..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT----IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCC----SSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCC----cceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 45689999999999999999999998764333222 22222222334455567999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+...
T Consensus 97 d~iilV~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~---------------- 156 (192)
T 2fg5_A 97 AAAVIVYDITKQ-DSFYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYAE---------------- 156 (192)
T ss_dssp SEEEEEEETTCT-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 78888888888877653 2589999999999997532 2222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 157 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 --------------------SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp --------------------TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 123589999999998 9999999998765
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=185.01 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=114.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+.. ....++.+..........++..+.+.+|||||++++...+..+++.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 346799999999999999999999987732 12223333333333334566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+ +. +
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------ 144 (180)
T 2g6b_A 85 HALLLLYDVTNK-ASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHERVVKREDGEK-LA---K------------ 144 (180)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSCCCSCHHHHHH-HH---H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCcccccCHHHHHH-HH---H------------
Confidence 999999999997 678888888888776432 6889999999999986432 222221 11 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 --------------------EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp --------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=181.75 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=122.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|+|||||++++.++.+.....+ +.+...........+..+.+.+|||||++++...+..+++.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~ 80 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP----TIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSA 80 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC----CCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----ceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCC
Confidence 457999999999999999999999886443222 2222222223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++.....|+..+.... .+..|+++|+||+|+..... .++..+ +. +
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~---~------------- 139 (170)
T 1z0j_A 81 AAIIVYDITKE-ETFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKD-YA---D------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECCccccccccCHHHHHH-HH---H-------------
Confidence 99999999997 67888888888777643 27899999999999976432 222111 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 -------------------SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred -------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=182.55 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=116.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+.....++.. ..........++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 79 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG----ASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS 79 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS----CEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc----eEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccC
Confidence 3567999999999999999999998877543333332 222223344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+...
T Consensus 80 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (170)
T 1z08_A 80 NGAILVYDITDE-DSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAE---------------- 139 (170)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 77888888887766542 25789999999999976432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 --------------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp --------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 113579999999998 999999998765
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=183.56 Aligned_cols=161 Identities=17% Similarity=0.253 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|+|||||++++.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI----DFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM 77 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------C----CEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccce----eEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCC
Confidence 3578999999999999999999998875433333322 222223444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~------------------ 135 (170)
T 1g16_A 78 GIILVYDITDE-RTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAK------------------ 135 (170)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTCCSCHHHHHHHHH------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCCcCccCHHHHHHHHH------------------
Confidence 99999999997 678888888888776532 58999999999999543322221111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 -----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 -----------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp -----------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=187.23 Aligned_cols=164 Identities=24% Similarity=0.213 Sum_probs=118.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccccccee-------eccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-------MEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
...++|+++|++|||||||++.+.+. +...+.++ ..++.+........ ..++..+.+.+|||||++++...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45689999999999999999766654 33222111 12233323333333 55667789999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCC-----CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEF-----LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+..+++.+|++|+|+|++++ .+++..+..|+..+... ..+.|+++|+||+|+......+++.+.+.
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT----LDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC----TTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc----cCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999942 14556666666665221 37899999999999987655554433322
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhc
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++ ++++|||++|+ +++++++|.+.+
T Consensus 162 -------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 -------------------------------PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------------------------TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------------hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 1233 79999999999 999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=186.07 Aligned_cols=161 Identities=14% Similarity=0.212 Sum_probs=120.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+.....+ +.. .........++..+.+.+|||||++++...+..+++.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 77 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP----TIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT----TCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----Cch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 567999999999999999999998876433222 222 222333445676678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------------------ 136 (189)
T 4dsu_A 78 GFLCVFAINNT-KSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------------------ 136 (189)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHH------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcccccCHHHHHHHHH------------------
Confidence 99999999997 778888888888876432 268999999999999754433332222222
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 -----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 -----------------SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp -----------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=186.92 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++.. .......+..++..+.+.+|||||++++...+..+++.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG----VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcc----eEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 3457999999999999999999999887543333322 122222334456667999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+...
T Consensus 103 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---------------- 162 (201)
T 2hup_A 103 NGAILAYDITKR-SSFLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAE---------------- 162 (201)
T ss_dssp SEEEEEEETTBH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHH----------------
Confidence 999999999997 67888888888887653 2689999999999997633 2333222211
Q ss_pred cccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++ ++++|||++|+ +++++++|.+.+
T Consensus 163 --------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 --------------------HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp --------------------HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123 79999999998 999999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=179.53 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.+..+... .+..+. .+......++..+.+.+|||||++.+...+..+++.+|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 75 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-----AEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA 75 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------C-EEEEEEEETTEEEEEEEEECC---------------CCE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-----CCcccc-ceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCE
Confidence 57999999999999999999987654211 111111 112334556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 76 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~----------------- 134 (166)
T 3q72_A 76 YVIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGR-ACAV----------------- 134 (166)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHH-HHHH-----------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccccccccCHHHHH-HHHH-----------------
Confidence 9999999997 789999999988887532 268999999999999764432 2211 1111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 135 ------------------VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ------------------HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ------------------HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=187.17 Aligned_cols=195 Identities=31% Similarity=0.457 Sum_probs=140.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+.++|+++|++|+|||||+++|.++.+.. ...+..++.+.. . ....+.+|||||+++++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCCSSCEEETT-------G--GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeeecCceEEEE-------e--eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 3567899999999999999999999987643 122222222111 1 22588999999999999998888877
Q ss_pred ----CCEEEEEEeCC-CCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh-
Q 024385 141 ----AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR- 213 (268)
Q Consensus 141 ----~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~- 213 (268)
+|++|+|+|++ +. .++.....|+..++..... ...++|+++|+||+|+......+++.+.+.++++.+....
T Consensus 79 ~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCT-TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCCh-HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999 65 7789999999888764211 1268999999999999988888877777777676654432
Q ss_pred ------hcccccc--ccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhc
Q 024385 214 ------SAVSEAD--VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266 (268)
Q Consensus 214 ------~~~~~~~--~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 266 (268)
++....+ .......-.....|.|+.+..++.++.+|+.+++++++++|+.+++
T Consensus 158 ~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~~i~~~~~~~~~~~ 218 (218)
T 1nrj_B 158 KSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218 (218)
T ss_dssp HHHHC--------------CTTC----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred ccccccccccccccchhhhcccccCCCCccccccCCceEEEeccccCCcHHHHHHHHHhhC
Confidence 2222221 1122222222367889899999999999999999999999998863
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=183.44 Aligned_cols=161 Identities=18% Similarity=0.216 Sum_probs=123.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+..... ++.+..........++..+.+.+|||||++++...+..+++.+|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 45899999999999999999999887644332 23332333334445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. .
T Consensus 89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 147 (179)
T 2y8e_A 89 VAVVVYDITNT-NSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKA----K------------- 147 (179)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccCcCCHHHHHHHH----H-------------
Confidence 99999999997 678888888888776432 6899999999999975432 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 148 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 -------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp -------------------HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998765
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=186.95 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....+ +.+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA----TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC----CCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC----ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 457999999999999999999999887543332 2332233333445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+ +. +
T Consensus 101 ~~i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~---~------------- 159 (201)
T 2ew1_A 101 ALILTYDITCE-ESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAERREVSQQRAEE-FS---E------------- 159 (201)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-HH---H-------------
Confidence 99999999997 77888888888876643 26899999999999975332 222211 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 160 -------------------AQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=186.08 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+.....++ .+.......+.+++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIST----IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHH----HCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----ccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 3579999999999999999999988764333322 232222233445666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|++++ .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 141 (183)
T 2fu5_C 83 GIMLVYDITNE-KSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVNDKRQVSKERGEKLA----L------------- 141 (183)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CCSCCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECccCCccCcCCHHHHHHHH----H-------------
Confidence 99999999997 778888888888876532 6899999999999976432 22222211 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 -------------------DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp -------------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=180.67 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=119.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|+|||||++++.++.+..... ++.+ ..+......++..+.+.+|||||++++...+..+++.+|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC----TTCC-EEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCC----CCcc-eEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence 45799999999999999999999887643222 2222 122223445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 137 (168)
T 1u8z_A 78 GFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----------------- 137 (168)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccccCccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888876532 15899999999999976432 222222211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 -------------------QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp -------------------HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-27 Score=182.97 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=119.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
+.+.++|+++|++|||||||+++++++.+..... ++.+.+ ...+.+++..+.+.+|||||+++++ +++.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~----~t~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES----PEGGRF--KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC----TTCEEE--EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----CCcceE--EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 3567899999999999999999999988754332 222222 2445667777889999999998876 7888
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC----CCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA----HTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+|++++|||+++. .++..+..|+..+...... .+.|+++|+||+|+... ...++..+...+
T Consensus 86 ~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~------------ 150 (184)
T 3ihw_A 86 VDAVVFVFSLEDE-ISFQTVYNYFLRLCSFRNA--SEVPMVLVGTQDAISAANPRVIDDSRARKLSTD------------ 150 (184)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHTTSCG--GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH------------
T ss_pred CCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccccCHHHHHHHHHH------------
Confidence 9999999999997 7899989999888775321 57899999999999521 222222222111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++|++|||++|+ +++++++|.+.+
T Consensus 151 -----------------------~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 151 -----------------------LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -----------------------TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223589999999998 999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=185.16 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=122.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....+ +.+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS----TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCC----CSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----cccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 357999999999999999999999877543332 2332333333455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+........ ..+.+..
T Consensus 91 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 149 (196)
T 3tkl_A 91 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD----------------- 149 (196)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888766532 6899999999999976543211 1111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 150 ------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 150 ------------------SLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp ------------------HTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=188.13 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=118.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.....++. + ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----F-ENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----E-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----e-eeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 456899999999999999999999988744333332 2 22223345567678899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++|+|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+..........+...+..+.
T Consensus 96 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------ 158 (194)
T 3reg_A 96 DVVLLCFAVNNR-TSFDNISTKWEPEIKHY----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------------ 158 (194)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------------
Confidence 999999999997 778886 4555555433 2689999999999997532111111111111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeE-EEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.++. ++++||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 159 --------------------LGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp --------------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 1123 9999999999 999999998764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-27 Score=182.84 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=121.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+..... ++.+.. +......++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD----PTIENT-FTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----TTCCEE-EEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CCcccc-EEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcC
Confidence 356899999999999999999999887643322 222222 234455567678899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 79 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (181)
T 3t5g_A 79 NGYILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAE---------------- 139 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHH----------------
Confidence 999999999997 788999999888876532 25899999999999965432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 --------------------SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp --------------------HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-27 Score=183.32 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.... .++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY----ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CC----TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 35689999999999999999999998764322 23333333333445566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+...... ++..+. . .
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~---~------------ 141 (181)
T 3tw8_B 83 HGVIVVYDVTSA-ESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKF-A---G------------ 141 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHH-H---H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHH-H---H------------
Confidence 999999999997 78888888888887643 68999999999998764422 221111 1 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 142 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 --------------------QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp --------------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=183.01 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=121.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||++++.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT----IGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC----SEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 4579999999999999999999998875433322 222222233444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 143 (186)
T 2bme_A 85 GALLVYDITSR-ETYNALTNWLTDARMLAS---QNIVIILCGNKKDLDADREVTFLEASRFA----Q------------- 143 (186)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999997 778888888877765432 6899999999999975332 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 144 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 144 -------------------ENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999988754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=185.60 Aligned_cols=165 Identities=19% Similarity=0.284 Sum_probs=115.0
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
....+.++|+++|++|||||||++++.++.+.....++... .........++..+.+.+|||||++++...+..++
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 98 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV----DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYF 98 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC--------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHH
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc----eeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHH
Confidence 33467899999999999999999999998874433332221 11122234456667899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC------C--CHHHHHHHHHHHHHHHH
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------H--TKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~------~--~~~~~~~~l~~~l~~~~ 210 (268)
+.+|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+... . ..++.. .+. .
T Consensus 99 ~~~d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~---~--- 167 (199)
T 2p5s_A 99 RKADGVLLLYDVTCE-KSFLNIREWVDMIEDAAH---ETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA---M--- 167 (199)
T ss_dssp HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH---H---
T ss_pred hhCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccccccccccCHHHHH-HHH---H---
Confidence 999999999999997 678888888877665422 58899999999998521 1 111111 111 1
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 168 -----------------------------~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 -----------------------------TYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -----------------------------HHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----------------------------HcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 123589999999998 9999999988653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=182.65 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=122.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+..... ++.+. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD----PTIED-SYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC----TTCCE-EEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccC----CCcCc-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 456899999999999999999999987643322 22222 2223345566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..++.... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~--------------- 142 (181)
T 2fn4_A 82 HGFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEAS-AFGA--------------- 142 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHH-HHHH---------------
Confidence 999999999997 778888888888865432 268999999999999764322 2211 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 143 --------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 143 --------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp --------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=179.70 Aligned_cols=165 Identities=14% Similarity=0.163 Sum_probs=122.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+..... ++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF----HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 456799999999999999999999887643332 3333333333444566667999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 81 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~--------------- 144 (177)
T 1wms_A 81 DCCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD--------------- 144 (177)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---------------
Confidence 999999999997 678888888877765321 112678999999999997432 23332222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 --------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp --------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224579999999998 999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=182.72 Aligned_cols=161 Identities=12% Similarity=0.190 Sum_probs=122.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.....+ +.+... ......++..+.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP----TIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT----TCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----Ccccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 4568999999999999999999998876433322 222222 33345567667889999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~---------------- 151 (183)
T 3kkq_A 91 DGFLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMAT---------------- 151 (183)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCCchhccCcCHHHHHHHHH----------------
Confidence 999999999997 788888888888866422 2688999999999997633 2222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeec-cCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||+ +|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 --------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp --------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112579999999 897 999999998764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-27 Score=183.35 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=119.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+.....++.... .....+..++..+.+.+|||||++++...+..+++.+|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE----FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS----EEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce----eEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 45799999999999999999999988754333322211 11222344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 96 ~ii~v~d~~~~-~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 154 (191)
T 2a5j_A 96 GALLVYDITRR-ETFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLESRRDVKREEGEAFA----R------------- 154 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCCccccCHHHHHHHH----H-------------
Confidence 99999999997 778888888888876532 6899999999999975332 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 155 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 155 -------------------EHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=180.13 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+..... ++.+.. .......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~ 76 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 76 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 35799999999999999999999887643222 222222 2333455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +. +
T Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 136 (167)
T 1kao_A 77 GFILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGRA-LA---E------------- 136 (167)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcccccccCCHHHHHH-HH---H-------------
Confidence 99999999997 678888888888876532 25899999999999975432 222211 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 137 -------------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -------------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-27 Score=183.52 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=121.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT----IGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC----CSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc----cceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4579999999999999999999998875433322 222222223344566689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 90 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------------------ 148 (195)
T 1x3s_A 90 GVILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFAR------------------ 148 (195)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHHH------------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCcccccCHHHHHHHHH------------------
Confidence 99999999997 678888888888776432 2579999999999995432 2222221111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 149 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 ------------------KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=179.04 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--chhhHhhhccC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--LRPKLDEFLPQ 140 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--~~~~~~~~~~~ 140 (268)
+.++|+++|++|||||||+++|.++.+..... + .+.......+..++..+.+.+|||||++. +......+++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 77 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-Q----LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG 77 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-C----SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-c----cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc
Confidence 56799999999999999999999887643211 1 11112223344566667899999999987 56667788999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +. .
T Consensus 78 ~~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~---~----------- 139 (175)
T 2nzj_A 78 GSAYVIVYSIADR-GSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARCREVSVEEGRA-CA---V----------- 139 (175)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHH-HH---H-----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccccccCHHHHHH-HH---H-----------
Confidence 9999999999997 788888888887776422 25899999999999976432 222111 11 1
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 140 ---------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 140 ---------------------VFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ---------------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=183.04 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++. +.......+...+..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 35799999999999999999999988754333332 22222223344566689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+. . +
T Consensus 83 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~---~------------- 141 (203)
T 1zbd_A 83 GFILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQL-A---D------------- 141 (203)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHHH-H---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHHH-H---H-------------
Confidence 99999999997 77888888888876643 26889999999999976432 2222211 1 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 -------------------HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------------------HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999987653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=179.56 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=121.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++.... ........++..+.+.+|||||++++...+..+++.+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE----FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC----EEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE----EEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 346899999999999999999999988644333222211 1122233455567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 89 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 148 (179)
T 1z0f_A 89 AGALMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIILIGNKADLEAQRDVTYEEAKQFAE---------------- 148 (179)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEeCcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888887766532 6899999999999975432 222222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 149 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 --------------------ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=179.17 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=121.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV----DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA 78 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSS----SEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEE----EEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCC
Confidence 35689999999999999999999998775433333221 22222334456567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.... ..++..+.. +
T Consensus 79 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------ 137 (168)
T 1z2a_A 79 QACVLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLA----K------------ 137 (168)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHH----H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHH----H------------
Confidence 999999999997 67888888888877643 588999999999997543 222222211 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 138 --------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 --------------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp --------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-27 Score=183.03 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=118.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCC-ceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG-KIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||++++.++.+.....++ .+.......+...+ ..+.+.+|||||++++...+..+++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 79 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT----IGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG 79 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT----TTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc----eeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh
Confidence 45689999999999999999999998764333322 22222222233333 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
+|++++|+|+++. .++..+..|+..+...... ..+.| +++|+||+|+..... .++..+.. +
T Consensus 80 ~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~---------- 143 (178)
T 2hxs_A 80 AQGVLLVYDITNY-QSFENLEDWYTVVKKVSEE-SETQPLVALVGNKIDLEHMRTIKPEKHLRFC----Q---------- 143 (178)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHHH-HTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----H----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEccccccccccCHHHHHHHH----H----------
Confidence 9999999999997 6788888887777653210 02455 899999999975332 22222111 1
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 144 ----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ----------------------ENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------------------HHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 113579999999998 9999999988753
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=180.36 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=113.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.. +. ++.+.. +...+..++..+.+.+|||||+++ ..|++.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~----~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~ 73 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LE----KTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA 73 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS----SCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cC----CCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhC
Confidence 356899999999999999999999988753 22 222222 233345567678899999999987 4678889
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC--C--CCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT--A--HTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~--~--~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
|++|+|+|++++ .++..+..|+..+.........+.|+++|+||+|+.. . ...++..+... .
T Consensus 74 d~~ilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~--------- 139 (178)
T 2iwr_A 74 DAVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----D--------- 139 (178)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----H---------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----h---------
Confidence 999999999997 7888888865444332111126899999999999942 1 12222222111 1
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 ----------------------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 140 ----------------------MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ----------------------HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 224689999999998 999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=182.58 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=120.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++ .+...........+..+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT----IGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCC----SSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc----cceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3579999999999999999999998875433222 222222222334555678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+...
T Consensus 100 ~vi~v~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 158 (193)
T 2oil_A 100 GALLVFDLTKH-QTYAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFAE----------------- 158 (193)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHHH-----------------
Confidence 99999999997 67888888888887643 26899999999999976432 222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 159 -------------------NNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999988754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=181.32 Aligned_cols=159 Identities=21% Similarity=0.229 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||+++|.++.+.....++. +.......+...+..+.+.+|||||++++...+..+++.+|+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC----CCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce----eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 5799999999999999999999988754333332 212222223345556799999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+. . +
T Consensus 98 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~---~-------------- 155 (189)
T 2gf9_A 98 FLLMYDIANQ-ESFAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGRRL-A---D-------------- 155 (189)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H---H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHHHH-H---H--------------
Confidence 9999999997 67888888888876643 26899999999999976432 2222211 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 156 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 ------------------DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=183.94 Aligned_cols=161 Identities=18% Similarity=0.283 Sum_probs=123.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+...+. ++.+. .+...+..++..+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKAD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----TTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC----Cccce-EEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 456899999999999999999999887643322 22222 2223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 147 (206)
T 2bov_A 87 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE---------------- 147 (206)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccccccccHHHHHHHHH----------------
Confidence 999999999997 778888888888877532 25899999999999976432 232222221
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 148 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp --------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=181.45 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=122.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+...+. ++.+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----TTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC----Cccc-eEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 456899999999999999999999887643222 2222 22223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 151 (187)
T 2a9k_A 91 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE---------------- 151 (187)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHH----------------
Confidence 999999999997 778888888888876532 15899999999999976432 222222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=183.19 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV----DFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCC----CEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc----eeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 4579999999999999999999998875443333222 222223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 83 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 141 (206)
T 2bcg_Y 83 GIIIVYDVTDQ-ESFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLKDKRVVEYDVAKEFAD----------------- 141 (206)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888766532 6799999999999976432 222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 142 -------------------ANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -------------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122479999999998 999999998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=181.49 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|||||||++++.++.+.....++... . +...+..++..+.+.+|||||++++...+..+++.+|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~----~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD----H-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC----C-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc----e-eEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 4579999999999999999999998775433333221 1 1223445666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH-----H-HHHHHHHHHhhhc
Q 024385 143 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ-----M-EKEIDKLRASRSA 215 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-----l-~~~l~~~~~~~~~ 215 (268)
++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+.......+..+. + ..+...
T Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~------- 159 (194)
T 2atx_A 92 VFLICFSVVNP-ASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK------- 159 (194)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-------
Confidence 99999999997 7788876 6766666532 58999999999999754211000000 0 000000
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+....+..++++|||++|+ +++++++|.+.+
T Consensus 160 --------------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 --------------------LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp --------------------HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000111379999999998 999999998763
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=184.47 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=119.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++..+.+.....++. + ..+......++..+.+.+|||||++++...+..+++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----F-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS----E-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee----c-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence 3578899999999999999999999887744333322 1 2233344556767888999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+.......+..+... ...+...
T Consensus 102 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~ 167 (204)
T 4gzl_A 102 TDVFLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKK---------LTPITYP 167 (204)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCHHHHHHHHHTT---------CCCCCHH
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccchhhhhhhhccc---------cccccHH
Confidence 9999999999997 7788876 5655555432 5899999999999975432211110000 0000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 168 ~~------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 168 QG------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HH------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HH------------HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00 001111233479999999999 999999998764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=186.05 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=119.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||+++|.++.+...+.+ +.+. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDP----TVEN-TYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCC----CSEE-EEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCC----ccce-EEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 5678999999999999999999999887543322 2222 2233344455568899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..++|+++|+||+|+...... .+.. .+.+
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~--------------- 157 (201)
T 3oes_A 97 HGYVLVYSVTSL-HSFQVIESLYQKLHEGHG--KTRVPVVLVGNKADLSPEREVQAVEGK-KLAE--------------- 157 (201)
T ss_dssp CEEEEEEETTCH-HHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCccccccCHHHHH-HHHH---------------
Confidence 999999999997 788999999888876532 258899999999999754432 2221 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 158 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 158 --------------------SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp --------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123489999999998 999999998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=185.55 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=118.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++. +. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----FE-NYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EE-EEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----ee-eEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 467899999999999999999999988754333332 22 2233345566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHH-HHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--------------CHHHHHHHHHHHH
Q 024385 142 AGIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--------------TKEFIRKQMEKEI 206 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~l~~~l 206 (268)
|++|+|||+++. .++.. ...|+..+.... .+.|+++|+||+|+.... ..++..+..
T Consensus 100 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 170 (214)
T 3q3j_B 100 DAVLLCFDISRP-ETVDSALKKWRTEILDYC----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA---- 170 (214)
T ss_dssp SEEEEEEETTCT-HHHHHHHTHHHHHHHHHC----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH----
T ss_pred eEEEEEEECcCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH----
Confidence 999999999997 77888 577777776642 689999999999997531 111111111
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC--chhHHHHHHhhc
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
+ ..++ +|++|||++|. +++++++|.+.+
T Consensus 171 ~--------------------------------~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 171 K--------------------------------QLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp H--------------------------------HHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H--------------------------------HcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 0 1234 79999999995 999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=183.15 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=117.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||+++|.++.+.... .++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC----KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC----CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34578999999999999999999988764322 22333222233344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 100 d~iilV~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~--------------- 159 (192)
T 2il1_A 100 KGIILVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREITRQQGE-KFAQ--------------- 159 (192)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHH-HHHH---------------
Confidence 999999999997 67888888877665543 25899999999999975432 22211 1110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++|||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 160 -------------------QITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp -------------------TSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------hcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0124589999999998 999999998764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=182.25 Aligned_cols=164 Identities=14% Similarity=0.094 Sum_probs=109.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|+|||||++++.++.+.....++.. ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-----DNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee-----eeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence 5679999999999999999999998876543333322 12223344556567888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH--------HHHHHHHHHHHHHHh
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--------IRKQMEKEIDKLRAS 212 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~l~~~l~~~~~~ 212 (268)
|++++|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+........ ..+...+..+.
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~---- 151 (182)
T 3bwd_D 81 DVFILAFSLISK-ASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL---- 151 (182)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH----
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH----
Confidence 999999999997 7788876 5666555432 5899999999999965421100 00011110010
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..++++|||++|+ +++++++|.+.+
T Consensus 152 ---------------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 ---------------------------IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp ---------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112379999999998 999999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=181.29 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=94.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+...+.++. +.. +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 79 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----cee-EEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC
Confidence 467899999999999999999999988754333332 211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 80 ~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 80 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGG
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEEEcchhhc
Confidence 999999999997 778877 56666655432 5899999999999974
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=182.05 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=117.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCce-------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI------------------------- 116 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 116 (268)
....+|+++|++|||||||+++|+++.+.....++... ......+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA----SFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIIT 80 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC----EEEEEEEETTC---------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc----eeEEEEEEecCccccccccccccccccccccccccccc
Confidence 45789999999999999999999998875433333221 1111112222222
Q ss_pred ------------eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 ------------KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ------------~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.+|||||++++...+..+++.+|++|+|+|++++ .++..+..|+..+... .+.|+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~~~~~~i~~~-----~~~piilv~ 154 (208)
T 3clv_A 81 NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS-NTLDRAKTWVNQLKIS-----SNYIIILVA 154 (208)
T ss_dssp ----CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHH-----SCCEEEEEE
T ss_pred cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHhh-----CCCcEEEEE
Confidence 6899999999999999999999999999999999997 7788888888888764 349999999
Q ss_pred ecCCCCC-CCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 185 NKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 185 nK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
||+|+.. ....+++.+.+. ..+++++++||++|. +++++++|
T Consensus 155 NK~D~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 155 NKIDKNKFQVDILEVQKYAQ------------------------------------DNNLLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp ECTTCC-CCSCHHHHHHHHH------------------------------------HTTCEEEEECTTTCTTHHHHHHHH
T ss_pred ECCCcccccCCHHHHHHHHH------------------------------------HcCCcEEEEecCCCCCHHHHHHHH
Confidence 9999422 123333332222 123589999999998 99999999
Q ss_pred Hhhc
Q 024385 263 REQV 266 (268)
Q Consensus 263 ~~~~ 266 (268)
.+.+
T Consensus 199 ~~~~ 202 (208)
T 3clv_A 199 AEEI 202 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=182.71 Aligned_cols=163 Identities=18% Similarity=0.293 Sum_probs=119.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~ 140 (268)
.+.++|+++|++|||||||++++.++.+.....++... ......+..++..+.+.+|||||++++. ..+..+++.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV----DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC----CEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce----EEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 45689999999999999999999998875433333221 2222233445666789999999999888 788999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 94 ~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~-------------- 155 (189)
T 1z06_A 94 VHAVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQ-KFAD-------------- 155 (189)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHH-HHHH--------------
Confidence 9999999999997 778888888888876532 26899999999999975432 22211 1111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---C-chhHHHHHHhhcC
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---E-ISQVEQFIREQVK 267 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++| + +++++++|.+.++
T Consensus 156 ---------------------~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 ---------------------THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ---------------------HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred ---------------------HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 12347999999999 7 9999999988764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-27 Score=186.09 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=119.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++. +.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC----SCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 457899999999999999999999887744333332 2222222344466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.......+..+.+.+
T Consensus 94 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----------------- 152 (213)
T 3cph_A 94 MGIILVYDVTDE-RTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAK----------------- 152 (213)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHTT---TCSEEEEEEECTTCSSCCSCHHHHHHHHH-----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCcccccCHHHHHHHHH-----------------
Confidence 999999999997 678888888887776432 57999999999999543222111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 153 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ------------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ------------------HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=182.46 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=114.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+...+.+ +++ ..+...+..++..+.+.+|||||++++...+..+++.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP----TAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN 91 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------C----CSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence 35688999999999999999999998876433322 222 2223334556666789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+....... ..+.. . ....+...
T Consensus 92 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~ 157 (201)
T 2q3h_A 92 TDIFLLCFSVVSP-SSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLREDVKVL---IELDK----C--KEKPVPEE 157 (201)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGCHHHH---HHHHT----T--TCCCCCHH
T ss_pred CcEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhchhhh---hhhcc----c--ccccCCHH
Confidence 9999999999997 7788876 5766665532 589999999999997532110 00000 0 00000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|. +++++++|.+.+
T Consensus 158 ~~------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 158 AA------------KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HH------------HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 001110122379999999998 999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=176.67 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=119.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|+++|++|||||||++++.++.+.....++ .+ ..+......++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPT----IE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT----CC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCc----cc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCE
Confidence 468999999999999999999988764332222 22 1222334445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------------- 135 (166)
T 2ce2_X 78 FLCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLAR------------------- 135 (166)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHH-------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHHH-------------------
Confidence 9999999987 778888888877766432 148999999999999763322222222211
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ----------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----------------HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=178.18 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=109.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-hHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~d~ 143 (268)
++|+++|++|||||||++++.+..+......+. +.......+..++..+.+.+|||||++++.. ....+++.+|+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN----SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC----------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCC----cCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 689999999999999999998776533222211 1222333344567678999999999998876 56677889999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (169)
T 3q85_A 79 FLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAG------------------ 137 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhhcccCCHHHHHHHHH------------------
Confidence 9999999997 788999999998887542 14899999999999974332 222221111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 ------------------TLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=178.19 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=110.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||++++.++.+.....++..... ....+..+ +..+.+.+|||||++++...+..+++.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----LTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG 81 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC----EEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE----EEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc
Confidence 4678999999999999999999999887543333332221 12223333 444789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC---CHHHHHHHHHHHHHHHHHhhhcc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH---TKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~---~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------------ 148 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------------ 148 (182)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH------------
T ss_pred CCEEEEEEECCCh-HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh------------
Confidence 9999999999997 778888888887766421 112678999999999996432 22222111110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----------------------LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -----------------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 234579999999998 999999998754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=184.10 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=122.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++....... ......+..+.+.+|||||++.+...+..+++.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV----KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE----EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE----EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 356899999999999999999999988755444444322211 1223344457899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~--------------- 156 (191)
T 3dz8_A 97 MGFILMYDITNE-ESFNAVQDWATQIKTYS---WDNAQVILVGNKCDMEEERVVPTEKGQ-LLAE--------------- 156 (191)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHH-HHHH---------------
Confidence 999999999997 77888888888877643 26899999999999965432 22221 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 157 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 157 --------------------QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp --------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=181.82 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=117.3
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+...+.+ +.+.. +......++..+.+.+|||||+++++.. ..+++.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~ 91 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP----NLEDT-YSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNW 91 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT----TCCEE-EEEEEEETTEEEEEEEEECCC---CCCT-HHHHTT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC----Cccce-eeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhh
Confidence 35678999999999999999999999886543332 22222 2223445666689999999999988775 679999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|||+++. .++..+..|+..+.........+.|+++|+||+|+..... .++..+...
T Consensus 92 ~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------------- 155 (187)
T 3c5c_A 92 AHAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG--------------- 155 (187)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH---------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH---------------
Confidence 9999999999997 7899999898888764211115899999999999965432 222222111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeee-ccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG-LTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa-~~g~-i~~l~~~l~~~~ 266 (268)
..++++++||| ++|+ +++++++|.+.+
T Consensus 156 ---------------------~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 ---------------------RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ---------------------HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ---------------------HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 11347999999 8998 999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=180.20 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=119.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc---------eeeEEEEeCCCCCCchhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK---------IKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~DtpG~~~~~~~ 133 (268)
...+|+++|++|||||||+++|.++.+.....++...... .......++. .+.+.+|||||++++...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR---EKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE---EEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee---eEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4579999999999999999999998775433333322111 0112222332 578999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~ 211 (268)
+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~---- 155 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLEDQRAVKEEEARELA----E---- 155 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGGGCCSCHHHHHHHH----H----
T ss_pred HHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHH----H----
Confidence 99999999999999999997 778888888888776532 15889999999999976332 22222211 1
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 156 ----------------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 ----------------------------KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp ----------------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------------HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=183.05 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=122.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|+|||||+++|.++.+...+. ++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA 81 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC----CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC
Confidence 467899999999999999999999987643332 2333333333445566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------- 145 (207)
T 1vg8_A 82 DCCVLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--------------- 145 (207)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------
Confidence 999999999997 678888888877765421 011478999999999997432 22222211110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|. +++++++|.+.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 --------------------KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp --------------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234579999999998 999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=185.41 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=117.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++.++.+...+.++.... +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-----FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-----EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-----EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 356899999999999999999999988754433333211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH------HHHHHHHHHHHHHHhhh
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF------IRKQMEKEIDKLRASRS 214 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~------~~~~l~~~l~~~~~~~~ 214 (268)
|++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+........ ..+...+..+.
T Consensus 82 d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~------ 150 (212)
T 2j0v_A 82 DIFVLAFSLISK-ASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ------ 150 (212)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH------
Confidence 999999999997 7788876 6666665532 5899999999999965421100 01111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..+++++||++|+ +++++++|.+.+
T Consensus 151 -------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 151 -------------------------IGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp -------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------cCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 112379999999998 999999998764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=179.84 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=118.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+...+.++... .+......++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 78 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-----EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-----eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCc
Confidence 4579999999999999999999988775443333221 11223345666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|++++ .++.... .|+..+.... .+.|+++|+||+|+.......+ .+.. . ....+...+.
T Consensus 79 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~~ 144 (186)
T 1mh1_A 79 VSLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQG 144 (186)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHHH
T ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccchhhh---hhcc----c--ccccCCHHHH
Confidence 99999999997 6787776 5666655432 4899999999999975421111 1100 0 0000000000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+....+..++++|||++|+ +++++++|.+.+
T Consensus 145 ------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 145 ------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------HHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 001111122389999999998 999999998875
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=177.31 Aligned_cols=163 Identities=13% Similarity=0.183 Sum_probs=118.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||++++.++.+.....++.... +......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~ 76 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-----YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGH 76 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-----EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc-----EEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCC
Confidence 45799999999999999999999987754333332211 1222334555578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|+++. .++.....|+..+..... ...+.|+++|+||+|+........ ..+.+. .
T Consensus 77 ~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~---~-------------- 137 (172)
T 2erx_A 77 AFILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALA---R-------------- 137 (172)
T ss_dssp EEEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHH---H--------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHH---H--------------
Confidence 99999999987 667777777766655321 115789999999999976433211 111111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 ------------------TWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------------HhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 123579999999998 9999999998764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=183.95 Aligned_cols=161 Identities=21% Similarity=0.263 Sum_probs=116.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV----EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------C----CEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc----eeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 34689999999999999999999988775433333221 12222334456667999999999998888899999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... ..+..+...
T Consensus 99 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---------------- 158 (200)
T 2o52_A 99 AGALLVYDITSR-ETYNSLAAWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQ---------------- 158 (200)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888888766432 6899999999999975432 222221111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 --------------------ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp --------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=182.10 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=118.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-hHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-KLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~ 140 (268)
...++|+++|++|||||||++++.+..+..... ++.+...+...+.+++..+.+.+|||+|++++.. ....+++.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE----PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT----TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCC----CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 456899999999999999999997644321111 1122222233345567778999999999998765 67788999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +.+
T Consensus 97 ~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a~-------------- 158 (195)
T 3cbq_A 97 GDAFLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRH-LAG-------------- 158 (195)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTTTCCSCHHHHHH-HHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccccCCcCHHHHHH-HHH--------------
Confidence 9999999999997 788889999988876432 14899999999999975432 222221 111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 159 ---------------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 159 ---------------------TLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ---------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=181.12 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++ .+... ......++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT----VFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEE-EEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc----ccceE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 45679999999999999999999998875433222 22221 12244566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++|+|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+...... .+.+. .+.. ..+...+
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~----~~~~--~~v~~~~ 163 (207)
T 2fv8_A 98 DVILMCFSVDSP-DSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDEHV---RTELA----RMKQ--EPVRTDD 163 (207)
T ss_dssp CEEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCHHH---HHHHH----HTTC--CCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccccc---hhhhh----hccc--CCCCHHH
Confidence 999999999997 677777 45555554421 58999999999999754221 11111 0000 0000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 164 ~------------~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 164 G------------RAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp H------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0 001111122379999999998 999999998763
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=183.40 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=117.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+...+.++.... .....+..++..+.+.+|||||++++...+..+++.+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE----FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS----EEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce----eEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 345799999999999999999999988754333332221 1222234456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 87 d~vilV~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 146 (223)
T 3cpj_B 87 VGALIVYDISKS-SSYENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFA----Q------------ 146 (223)
T ss_dssp CEEEEEEC-CCH-HHHHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHH----H------------
Confidence 999999999997 78888888888887653 26889999999999975432 22222111 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 147 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 147 --------------------ENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp --------------------HTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998765
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=181.02 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=119.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++... .+......++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-----TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCE-----EEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccc-----ceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 56789999999999999999999998775444333321 1122233456567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++..+..|+..+..... ...+.|+++|+||+|+.......+....+. .
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------------- 141 (199)
T 2gf0_A 81 HAFILVFSVTSK-QSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQAVA---Q-------------- 141 (199)
T ss_dssp SEEEEEEETTCH-HHHHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHHHH---H--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHHHH---H--------------
Confidence 999999999986 667777777655544211 014789999999999976332211111111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.+.
T Consensus 142 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 ------------------EWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred ------------------HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 112479999999998 9999999988653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=182.18 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=94.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+...+.++. +.. +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----cee-EEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 456899999999999999999999988754333332 211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|||+++. .++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 101 d~~ilv~D~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 101 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGG
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEEechhhcc
Confidence 999999999997 778877 56666665432 5899999999999974
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=181.86 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=116.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~ 140 (268)
...+||+++|++|||||||++++.+.... +.+..++++...+...+.+++..+.+.+|||+|++. ++.....|++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~---~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS---MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT---TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 45689999999999999999999965431 111111122222333455677777889999999886 45556778899
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|||+++. .++..+..|+..+..... ..++|+++|+||+|+...... ++.. .+..
T Consensus 112 a~~~ilVydvt~~-~sf~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~r~v~~~e~~-~~a~-------------- 173 (211)
T 2g3y_A 112 GDAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGR-ACAV-------------- 173 (211)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCcEEEEEEChHHhcCceEeHHHHH-HHHH--------------
Confidence 9999999999997 789998888877765321 257999999999999753322 2111 1111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ +++++++|.+.+
T Consensus 174 ---------------------~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 174 ---------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ---------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=180.54 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=119.7
Q ss_pred HHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 56 ~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
++.....+..+|+++|++|||||||++++.++.+...+.++ .+. .+......++..+.+.+|||||+++ ...+.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t----~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~ 93 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT----LES-TYRHQATIDDEVVSMEILDTAGQED-TIQRE 93 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT----CCE-EEEEEEEETTEEEEEEEEECCCCCC-CHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC----CCc-eEEEEEEECCEEEEEEEEECCCCCc-ccchh
Confidence 33344467899999999999999999999998774433222 221 2223344566668899999999998 77888
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.+|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 94 ~~~~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---------- 160 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLAT---------- 160 (196)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHH----------
T ss_pred hhhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccccccCHHHHHHHHH----------
Confidence 999999999999999997 678888888877766432 26899999999999976432 222221111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 161 --------------------------~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 --------------------------ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp --------------------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred --------------------------HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 113479999999985 999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=179.52 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=109.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|.+|||||||+++|.++.+.....+ +.+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP----TIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT----TCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCC----ccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence 3458999999999999999999998876432222 222 22223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 94 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------- 153 (190)
T 3con_A 94 EGFLCVFAINNS-KSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPTRTVDTKQAHELAK----------------- 153 (190)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCcccCCHHHHHHHHH-----------------
Confidence 999999999997 678888888877765421 1579999999999997632 2222222211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 154 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 -------------------SYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=183.14 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=101.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+...+.++ .+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t----~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 106 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT----VF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA 106 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCC----CC-EEEEEEEEETTEEEEEEEEEC---------------CE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc----cc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC
Confidence 45689999999999999999999988764433222 22 12223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+.......+..+... ...++..+
T Consensus 107 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~~ 172 (214)
T 2j1l_A 107 SVLLLCFDVTSP-NSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDKSLVNKLRRNG---------LEPVTYHR 172 (214)
T ss_dssp EEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCHHHHHHHHHTT---------CCCCCHHH
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccchhhhhhcccc---------cCcccHHH
Confidence 999999999997 7788876 5666665432 5899999999999976432211110000 00000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .+....+..++++|||++|. +++++++|.+.+
T Consensus 173 ~~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 173 GQ------------EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HH------------HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH------------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 01110122379999999998 999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=180.80 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=117.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+...+.++..... ...+..++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 97 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-----IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC-----EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE-----EEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC
Confidence 3467999999999999999999999887544333322211 11234456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+....... +.+.+ .. ...+..++
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~~--~~~v~~~~ 163 (201)
T 2gco_A 98 DVILMCFSIDSP-DSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDEHTR---RELAK----MK--QEPVRSEE 163 (201)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCHHHH---HHHHT----TT--CCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCccch---hhhcc----cc--cCcCCHHH
Confidence 999999999997 678877 45555444321 589999999999997542211 11110 00 00000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .+....+..++++|||++|+ +++++++|.+.+
T Consensus 164 ~~------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 164 GR------------DMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 01111122379999999998 999999998763
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-26 Score=192.14 Aligned_cols=162 Identities=22% Similarity=0.370 Sum_probs=119.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+... . |+.+..... +...+ +.+.+|||||++.+...+..+++.+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~----pT~~~~~~~--~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-E----EETTEEEEE--EEETT--EEEEEEECC-----CCSHHHHHTTEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-c----cccceEEEE--EecCc--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345899999999999999999998876321 1 222222211 22233 78999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|||+++. .++..+..++..++.... ..++|+++|+||+|+......+++.+.+...
T Consensus 235 ~vilV~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~----------------- 294 (329)
T 3o47_A 235 GLIFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLH----------------- 294 (329)
T ss_dssp EEEEEEETTCS-SSHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTCT-----------------
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHhhhc--cCCCeEEEEEECccCCcccCHHHHHHHhchh-----------------
Confidence 99999999997 889999999998887543 2689999999999998766655443332210
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ...+++++++||++|. |++++++|.+.+.
T Consensus 295 -------------~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 -------------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -------------TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -------------hh-hcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 00 1345789999999999 9999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-27 Score=188.70 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=121.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|.+|||||||+++++.+.+... ..++.+...........+..+.+.+|||||++.+...+..+++.+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 4568999999999999999999776655322 223333222333344456668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.......+..+...
T Consensus 89 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------------------ 145 (221)
T 3gj0_A 89 QCAIIMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIVFHR------------------ 145 (221)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCCHHH------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHHHHH------------------
Confidence 999999999997 77888888988887753 5899999999999976432211110000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 146 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 146 ------------------KKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ------------------HHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 124589999999998 999999998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=184.36 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=118.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc----------eeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK----------IKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~DtpG~~~~~ 131 (268)
.+.++|+++|++|||||||+++|.++.+.....++... ......+.+++. .+.+.+|||||++++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI----DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEE----EEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeE----EEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 34579999999999999999999998875433333321 111112222332 4789999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
..+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~-- 169 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQARELA----D-- 169 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHHH----H--
T ss_pred hHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCCEEEEEECCccccccccCHHHHHHHH----H--
Confidence 9999999999999999999997 678888888776654321 15789999999999976432 22221111 1
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 170 ------------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 ------------------------------KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ------------------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------------------------HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=184.01 Aligned_cols=163 Identities=16% Similarity=0.237 Sum_probs=117.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
...++|+++|++|||||||+++|+++.+... ..++.+........ ...+..+.+.+|||||++++...+..+++.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 4678999999999999999999998876432 22333222222222 223333689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+....... .+. ...
T Consensus 85 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~--~~~----~~~------------ 142 (218)
T 4djt_A 85 ASGAILFFDVTSR-ITCQNLARWVKEFQAVVG---NEAPIVVCANKIDIKNRQKIS--KKL----VME------------ 142 (218)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHC---SSSCEEEEEECTTCC----CC--HHH----HHH------------
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccC--HHH----HHH------------
Confidence 9999999999997 778888888887766432 568999999999997532111 011 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ..++++++|||++|. +++++++|.+.+
T Consensus 143 ---------------~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 143 ---------------VLK-GKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---------------HTT-TCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ---------------HHH-HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 234589999999998 999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-26 Score=182.38 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeecccccCCc--eeeEEEEeCCCCCCchhhHhhhc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGK--IKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
...+|+++|++|||||||+++|.++ .+...+.++ .+.......+..++. .+.+.+|||||++++...+..++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMT----SGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCc----cceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 4579999999999999999999988 554323222 221222223344554 57899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC-CC--CHHHHHHHHHHHHHHHHHhhhc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AH--TKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~-~~--~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+.+|++|+|+|+++. .++..+..|+..+.........+.|+++|+||+|+.. .. ..++..+...
T Consensus 95 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------------ 161 (208)
T 2yc2_C 95 NGVYYAILVFDVSSM-ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT------------ 161 (208)
T ss_dssp CCCCEEEEEEETTCH-HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH------------
T ss_pred hhCcEEEEEEECCCH-HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH------------
Confidence 999999999999997 7788889998888765320014889999999999975 22 2222222111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeecc-CC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-GE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~-g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++ |+ +++++++|.+.+
T Consensus 162 ------------------------~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 162 ------------------------TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ------------------------HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred ------------------------HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 1125899999999 98 999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=170.32 Aligned_cols=163 Identities=16% Similarity=0.248 Sum_probs=112.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.....++........ .+..++ ..+.+|||||++++...+..+++.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY----QVTVND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC----EEEETT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE----EEEeCC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 5788999999999999999999999887544433332222211 122344 4788999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. . .......+..+.. .+.|+++|+||+|+... ..+++.+.+. .. .
T Consensus 80 d~~i~v~d~~~~-~-~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~-~~~~~~~~~~----~~----~------- 135 (178)
T 2lkc_A 80 DIVILVVAADDG-V-MPQTVEAINHAKA------ANVPIIVAINKMDKPEA-NPDRVMQELM----EY----N------- 135 (178)
T ss_dssp CEEEEEEETTCC-C-CHHHHHHHHHHGG------GSCCEEEEEETTTSSCS-CHHHHHHHHT----TT----T-------
T ss_pred CEEEEEEECCCC-C-cHHHHHHHHHHHh------CCCCEEEEEECccCCcC-CHHHHHHHHH----hc----C-------
Confidence 999999999885 2 3334444443332 57899999999999764 2222222211 00 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.........+++++|||++|+ +++++++|.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 136 ------------LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp ------------CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ------------cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 000111234789999999999 999999998653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=173.31 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=111.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhH---hhh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL---DEF 137 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~---~~~ 137 (268)
..+.++|+++|++|||||||++++.+..... ............... + .++..+.+.+|||||+++|.... ..+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~--~-~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDD--I-SNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEE--E-CCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeee--c-cCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3578999999999999999999888753322 222222222211111 0 12444789999999999987776 899
Q ss_pred ccCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH-HHHHHHHHhhhc
Q 024385 138 LPQAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME-KEIDKLRASRSA 215 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~-~~l~~~~~~~~~ 215 (268)
++.+|++|+|||+++.. +++..+..|+..+... ..+.|+++|+||+|+.......+....+. ...+.+...
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~--- 165 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA--- 165 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh---
Confidence 99999999999999851 2345555566555332 26899999999999975432211111121 111111000
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ...+++|++|||++ + +++++++|.+.+
T Consensus 166 --------------------~~-~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 --------------------GL-EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp --------------------TC-TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred --------------------hh-hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 00 02357899999999 8 999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-25 Score=174.48 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=112.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~ 140 (268)
...++|+++|++|||||||++++.+.... ..+..++++...+...+.+++..+.+.+|||+|... ++.....|++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~ 80 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDS---MDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 80 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCC---C----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCC---cCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhccc
Confidence 35689999999999999999999864321 111111122222333455677777889999999876 45566778889
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|||+++. +++.....|+..+..... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 81 ~~~~i~v~dv~~~-~s~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a~-------------- 142 (192)
T 2cjw_A 81 GDAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGR-AXAV-------------- 142 (192)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCeEEEEEechhhhccccccHHHHH-HHHH--------------
Confidence 9999999999997 788888888777665321 157899999999999653321 1111 1110
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. +++++++|.+.+
T Consensus 143 ---------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 ---------------------VFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ---------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-27 Score=185.88 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV----DFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCC----SEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccc----eEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 3579999999999999999999988775433333222 122223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+........ ..+.+
T Consensus 108 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~~~v~~~~~~~~------------------- 164 (199)
T 3l0i_B 108 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTKKVVDYTTAKEF------------------- 164 (199)
T ss_dssp EEEECC-CCCS-HHHHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCSCC-CHH-------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcc---CCCCEEEEEECccCCccccCCHHHHHHH-------------------
Confidence 99999999997 788899998888866432 5899999999999965422100 00000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ..+++++++||++|+ +++++++|.+.+.
T Consensus 165 ---------------~~-~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 165 ---------------AD-SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---------------HH-TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ---------------HH-HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 223578999999999 9999999988764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=183.09 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=110.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---hHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---KLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~d 142 (268)
||+++|++|||||||++++.++.++. ...+..++.+..... + +..+.++||||||+++|+. ....|+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999988664432 222233443322211 1 1237899999999999974 4689999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|||+++. +.....|+..++.......+++|+++|+||+|+.......+..+.+..+..+ +
T Consensus 75 ~~IlV~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-----------~-- 138 (331)
T 3r7w_B 75 ALVYVIDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-----------E-- 138 (331)
T ss_dssp EEEEECCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-----------T--
T ss_pred EEEEEEECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-----------H--
Confidence 99999999985 4444555544433211112689999999999997653332222222221111 0
Q ss_pred CcccCCCCCCCeeeccC---CceeEEEEeeeccCCchhHHHHHHhhcCC
Q 024385 223 NDFTLGIPGQAFSFSQC---HNKVSVAEASGLTGEISQVEQFIREQVKP 268 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~---~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 268 (268)
|++. ..++.|+++||++.++.+.+..|.+.+.|
T Consensus 139 -------------la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 139 -------------LLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -------------TSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTSST
T ss_pred -------------HHhhcccccCceEEEeccCCCcHHHHHHHHHHHHHh
Confidence 1111 24689999999987699888888877655
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-26 Score=185.07 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+.....++.. ..+...+..++..+.+.+|||||++++...+..+++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-----DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 101 (204)
Confidence 35778999999999999999999998876443333222 1122334445656788899999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+.......+..+... .. .+...
T Consensus 102 ~d~iilv~D~~~~-~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~-------~v~~~ 167 (204)
T 3th5_A 102 TDVFLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKK--LT-------PITYP 167 (204)
Confidence 9999999999997 7788776 5555444321 4899999999999975432211111000 00 00000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 168 ~~------------~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 168 QG------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 00 001221222379999999998 999999988754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-25 Score=169.07 Aligned_cols=153 Identities=22% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDEF 137 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~~ 137 (268)
..+|+++|++|||||||++++.+..+.....++ .+.......+..++ ..+.+|||||+.++. .....|
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~----~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPG----VTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC---------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCC----cceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHH
Confidence 468999999999999999999987653322221 11111111122334 589999999998875 334566
Q ss_pred cc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 138 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 138 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
++ .+|++++|+|+++. +....|+..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~~i~v~D~~~~----~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------- 135 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL----ERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK----------- 135 (165)
T ss_dssp HHHHCCSEEEEEEETTCH----HHHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----------
T ss_pred HhcCCCCEEEEEecCCch----hHhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHH-----------
Confidence 64 89999999999874 445556666554 47899999999998542211100111111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 136 ------------------------~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 136 ------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp ------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred ------------------------HhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 112479999999998 9999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-25 Score=175.47 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=109.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeeccccc---CCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTK---KGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
.++|+++|++|||||||++++.+. .+...+ .++.+.......+.. ++..+.+.+|||||++++......++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~----~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ----SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCc----ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 479999999999999999999985 332212 222322222222221 23447899999999999888888999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+.++++++|+|++++..++..+..|+..+.... .+.|+++|+||+|+...... ........+.+
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~--------- 141 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQR---KACMSKITKEL--------- 141 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHH---HHHHHHHHHHT---------
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhh---HHHHHHHHHHH---------
Confidence 999999999999986336778888888876542 57899999999999653211 11111111111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
... . .+.....++++||++|. +++|++.|.+.+
T Consensus 142 ---~~~--~----------~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 142 ---LNK--R----------GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp ---TTC--T----------TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ---HHh--c----------CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 000 0 01122359999999994 899998887764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=171.24 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~ 131 (268)
...++|+++|++|||||||+++|.++.+......+...+.....+ ..++ .+.+||||| ++.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY----IIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE----EETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE----EECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 467899999999999999999999887532222222111111111 1122 689999999 55556
Q ss_pred hhHhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
..+..+++.+ |++++|+|+++. .+.... ++...+.. .+.|+++|+||+|+..........+.+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~- 164 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHA-PSNDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN- 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCC-CCHHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc-
Confidence 6677777766 999999999987 444432 22223322 67899999999999876554433333332111
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....++++++||++|+ +++++++|.+.++
T Consensus 165 ------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 ------------------------------IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ------------------------------CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ------------------------------ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 0234589999999998 9999999988764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-25 Score=167.00 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~~~~~ 137 (268)
++|+++|++|+|||||++++.++.+.. ....+..+..........++ ..+.+|||||+.. +...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV---VADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee---ccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHH
Confidence 589999999999999999999886521 11111111111222233344 4789999999987 34556678
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+++. +.....++..++.. .+.|+++|+||+|+.... +. +.+
T Consensus 77 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~------~~----~~~--------- 129 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAE---LTQADYEVAEYLRR-----KGKPVILVATKVDDPKHE------LY----LGP--------- 129 (161)
T ss_dssp TTTCSEEEEEEESSSC---CCHHHHHHHHHHHH-----HTCCEEEEEECCCSGGGG------GG----CGG---------
T ss_pred HHhCCEEEEEEECCCc---ccHhHHHHHHHHHh-----cCCCEEEEEECcccccch------Hh----HHH---------
Confidence 9999999999999986 22333455555443 578999999999997531 00 000
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.. .+..+++++||++|+ +++++++|.+.+|
T Consensus 130 ------------------~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 130 ------------------LYG-LGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp ------------------GGG-GSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------------HHh-CCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 110 111268999999998 9999999998875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=167.78 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~ 134 (268)
+..+|+++|++|||||||+++|.+..+.. .+..++++.......+.+++ ..+.+|||||+.++... .
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI---VTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC---CCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce---eeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHH
Confidence 56799999999999999999999876421 11112222222223344455 46899999999764322 1
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++++|+|+++. .++. ...|+..+.... ..++|+++|+||+|+.....
T Consensus 78 ~~~~~~ad~~i~v~D~~~~-~s~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~-------------------- 132 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTT-DAVD-PAEIWPEFIARL---PAKLPITVVRNKADITGETL-------------------- 132 (172)
T ss_dssp HHHHHTCSEEEEEEETTTC-CCCS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCC--------------------
T ss_pred HHHHHhCCEEEEEEECCCC-CCHH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchh--------------------
Confidence 2467899999999999987 4554 345665555432 25799999999999843210
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.. ....++++|||++|+ +++++++|.+.+.
T Consensus 133 --------------------~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 --------------------GMSE-VNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp --------------------EEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred --------------------hhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0111 124689999999998 9999999988753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=181.02 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=113.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch----------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------- 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------- 131 (268)
++...|+++|.+|||||||+|+|++.++. ..+..+++++.......... ....+.+|||||+.++.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~---i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS---IISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc---ccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45678999999999999999999998763 22233333332222222223 12689999999997655
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC-CCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV-TAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+++.+|++++|+|+++. .+......|+..+.. .+.|+++|+||+|+. ......+..+.+.+.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~----- 151 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKP------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK----- 151 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGG------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH-----
T ss_pred HHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHh------cCCCEEEEEECccCCCCHHHHHHHHHHHHHh-----
Confidence 4566788999999999999987 556665555554443 578999999999997 333332222222211
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ....+++++||++|+ +++++++|.++++
T Consensus 152 -------------------------~---~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 152 -------------------------H---PELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp -------------------------C---TTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -------------------------c---cCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 0 123479999999999 9999999999875
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=180.47 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-----hhhHhhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-----RPKLDEF 137 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-----~~~~~~~ 137 (268)
..+||+++|++|||||||++++.++.... ......++.+..... ..+.+ .+.+.+|||||++++ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~-~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF-DTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG-GGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-cccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 45799999999999999999999873311 111122222222221 22223 378999999999988 6778889
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHH---HHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
++.+|++|+|+|+++. .+++.+..|. ..+... .+++|+++|+||+|+.......+..+....+++.+..
T Consensus 78 ~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~--- 149 (307)
T 3r7w_A 78 FQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS--- 149 (307)
T ss_dssp HTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred hccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH---
Confidence 9999999999999997 7788776554 333332 2689999999999997633333222223333333211
Q ss_pred ccccccccCcccCCCCCCCeeeccCCc--eeEEEEeeeccCCchhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHN--KVSVAEASGLTGEISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~--~~~~~~~Sa~~g~i~~l~~~l~~~~~ 267 (268)
..+ +++++++||+++.+.+++..+.+.+-
T Consensus 150 ------------------------~~g~~~~~~~~tSa~~~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 150 ------------------------EFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180 (307)
T ss_dssp ------------------------TTTCCSCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ------------------------HcCCCCeEEEEeeecCChHHHHHHHHHHHHc
Confidence 111 36899999999667777766665543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=172.99 Aligned_cols=170 Identities=19% Similarity=0.262 Sum_probs=108.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------ch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~ 131 (268)
...++|+++|.+|+|||||+|+|+++.+.. ..+..+.++......... ......+.+|||||+.. +.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA--FASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS--CTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce--eecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 457899999999999999999999886311 111111111111111111 01225899999999643 24
Q ss_pred hhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
.....|++. +|++++|+|+++. +......+...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRP---LTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 455566655 7889999999986 22333333333332 578999999999997654433334444443332
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..... ....++++++||++|. +++++++|.+.++
T Consensus 176 ~~~~~-------------------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 176 YRDAG-------------------------YAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHT-------------------------CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhhcc-------------------------cCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 21100 0245689999999999 9999999998875
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=168.85 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RP 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~ 132 (268)
.+.++|+++|++|||||||+++|+++.+.... . +..+...........+ ..+.+|||||+.+. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~---~-~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS---Y-SFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC---C------CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---C-CCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 45789999999999999999999998763211 1 1111111111122233 68999999999431 12
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~ 209 (268)
.+..++..+|++|+|+|+++. .++. ....++..+... ..+.|+++|+||+|+........ ..+.+....+.
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 174 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSV----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN- 174 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTC----C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-
T ss_pred HHHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHh----hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-
Confidence 234567889999999999987 4443 334555555442 14899999999999976443221 11122211110
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++|||++|+ +++++++|.+.+
T Consensus 175 -----------------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 -----------------------------VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -----------------------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0112689999999998 999999998764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=177.64 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc--------hhhH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL--------RPKL 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~--------~~~~ 134 (268)
+..+|+++|.+|||||||+|+|++.++. ..+..+++++..........+ ..+.+|||||+.+. ....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~---ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA---PISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee---eecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHH
Confidence 3457999999999999999999998763 222233333222222222233 68999999998873 4456
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++++|+|++++ . .....|+...+.... .+.|+++|+||+|+..... .+ ...++.+
T Consensus 81 ~~~l~~ad~il~VvD~~~~-~--~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~--~~----~~~~~~~----- 143 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHP-P--TPEDELVARALKPLV---GKVPILLVGNKLDAAKYPE--EA----MKAYHEL----- 143 (301)
T ss_dssp HHHTSSCSEEEEEEETTSC-C--CHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSSHH--HH----HHHHHHT-----
T ss_pred HHHHhcCCEEEEEEECCCC-C--ChHHHHHHHHHHhhc---CCCCEEEEEECcccCCchH--HH----HHHHHHh-----
Confidence 6788999999999999986 2 233456655554321 4799999999999975321 11 1112211
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++|. +++++++|.+.++
T Consensus 144 -------------------------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 -------------------------LPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp -------------------------STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred -------------------------cCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 111368999999998 9999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=166.24 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~ 131 (268)
...++|+++|++|||||||++++.++.+.. ...+...+....... . + ..+.+||||| ++.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~----~-~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYL----V-N--SKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEE----E-T--TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEE----E-C--CcEEEEECCCCccccCChhhHHHHH
Confidence 456899999999999999999999887422 111111111111111 1 1 3688999999 44455
Q ss_pred hhHhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
..+..+++.+ |++++|+|+++. .+.. ...+...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~--~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIP-PQDS--DLMMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHH--HHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCceEEEEEecCCCC-CCHH--HHHHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 6666676655 999999999876 2222 2222223322 478999999999998665554444444332221
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+++++|||++|+ ++++++||.+.++
T Consensus 165 -------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 -------------------------------YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp -------------------------------SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -------------------------------cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234589999999999 9999999998764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=178.72 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=118.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|.+|+|||||++++.++.+.....++. + ..+...+..++..+.+.+|||||++++...+..+++.+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----F-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCS----E-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcc----c-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC
Confidence 567899999999999999999999887744333322 2 22233345567667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+. .|+..+.... .++|+++|+||+|+.......+ .+.. . ....+...+
T Consensus 228 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~ 293 (332)
T 2wkq_A 228 DVFLICFSLVSP-ASFHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQ 293 (332)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHH
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc----c--ccccccHHH
Confidence 999999999997 6777776 4555554432 4899999999999965321111 0000 0 000000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .|....+..++++|||++|+ +++++++|.+.+
T Consensus 294 ~~------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 01111122379999999998 999999998754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=182.75 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhH-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL------- 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------- 134 (268)
+...+|+++|.+|||||||+|+|++... ...+..++++.......+..+| +.+.+|||||+.++...+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~---a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~ 305 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQER---AIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRR 305 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETT--EEEEEEC------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---cccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHH
Confidence 4578899999999999999999998753 2222333334344334445556 689999999998766443
Q ss_pred -hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 135 -DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 135 -~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+++.+|++++|+|++++ .++..... ...++... .+.|+++|+||+|+......+. +.+.+ .
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~-~s~~~~~~-~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~----~---- 369 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTE-RLDDELTE-IRELKAAH----PAAKFLTVANKLDRAANADALI--RAIAD----G---- 369 (476)
T ss_dssp --CCCSSCSEEEEEEETTTC-SSGGGHHH-HHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHH----H----
T ss_pred HHhhcccCCEEEEEEECCCC-cchhhhHH-HHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHh----c----
Confidence 3478899999999999997 55543222 22223221 3789999999999976543321 11111 0
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+++++||++|+ +++|+++|.+.+
T Consensus 370 ---------------------------~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 370 ---------------------------TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ---------------------------HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred ---------------------------CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 01368999999999 999999998875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=164.75 Aligned_cols=154 Identities=23% Similarity=0.228 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~ 136 (268)
+.++|+++|++|||||||+++|.+..+.. +..++.+.......+..++ ..+.+|||||+.++. .....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYI----GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEE----EECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----cCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHH
Confidence 45799999999999999999999876522 2223333222233333444 689999999999875 34556
Q ss_pred hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
+++ .+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 80 ~~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~---------- 139 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK---------- 139 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHHH----------
T ss_pred HHhccCCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHHH----------
Confidence 664 5999999999886 4566677766654 57899999999998543211111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 140 -------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 140 -------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp -------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred -------------------------HhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 112479999999997 9999999987653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=172.04 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh----------hH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP----------KL 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~----------~~ 134 (268)
++|+++|.+|||||||+|+|++..+.. +..|+++.......+...+ ..+.+|||||+..+.. ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v----~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~ 75 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV----GNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIA 75 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE----EECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc----cCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHH
Confidence 589999999999999999999886522 2223333333333344445 4899999999988764 35
Q ss_pred hhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 135 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
..|+ +.+|++|+|+|+++. +....+...+.. .+.|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~~~~~~d~vi~VvDas~~----~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~-------- 137 (256)
T 3iby_A 76 AQSVIDLEYDCIINVIDACHL----ERHLYLTSQLFE------LGKPVVVALNMMDIAEHRGISIDTEKLES-------- 137 (256)
T ss_dssp HHHHHHSCCSEEEEEEEGGGH----HHHHHHHHHHTT------SCSCEEEEEECHHHHHHTTCEECHHHHHH--------
T ss_pred HHHHhhCCCCEEEEEeeCCCc----hhHHHHHHHHHH------cCCCEEEEEEChhcCCcCCcHHHHHHHHH--------
Confidence 5677 899999999999984 333333333332 58899999999998654322111122221
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|. +++++++|.+.
T Consensus 138 ---------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 138 ---------------------------LLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ---------------------------HHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ---------------------------HcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 113579999999999 99999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=161.50 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=116.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.+..+...+. ++.+.......+.++|..+.+.+|||||++.++.....+++.+++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 4789999999999999999999987643322 222222233345567776789999999999988888889999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++.... . .
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-~---~-------------- 138 (199)
T 2f9l_A 81 ALLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAF-A---E-------------- 138 (199)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H---H--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccCcCHHHHHHH-H---H--------------
Confidence 9999999986 56777777776665432 2578999999999997533 22222111 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||+++. +++++++|.+.+
T Consensus 139 ------------------~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 139 ------------------KNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123578999999998 999999988754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=173.25 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=108.7
Q ss_pred cCCCeEEEEcCC---------CCcHHHHHHHHHcC---CcccccceeeccccceEEeeccc--------------ccCCc
Q 024385 62 KKSTTIVLAGLS---------GSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSES--------------TKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~---------~~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 115 (268)
...+||+++|.+ |||||||+++|+++ .+...+.++.. +.......+ ..++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS---TSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC---HHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc---ccccceeEeecccccccccccccccCCc
Confidence 456899999999 99999999999984 44332222210 100011111 13456
Q ss_pred eeeEEEEe-----------------------CCCCCCchhhHhhhcc---------------------CCCEEEEEEeCC
Q 024385 116 IKPVHLVD-----------------------VPGHSRLRPKLDEFLP---------------------QAAGIVFVVDAL 151 (268)
Q Consensus 116 ~~~~~i~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 151 (268)
.+.+.+|| ++|++++...+..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 68899999 6677777667777776 799999999999
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCC
Q 024385 152 EF-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 230 (268)
Q Consensus 152 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 230 (268)
+. ..+++.+..|+..+..... ..++|+++|+||+|+..... + + +.+.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~---v-~----~~~~~--------------------- 222 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLA--KTKKPIVVVLTKCDEGVERY---I-R----DAHTF--------------------- 222 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHH--HTTCCEEEEEECGGGBCHHH---H-H----HHHHH---------------------
T ss_pred CCchhhHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccccccHH---H-H----HHHHH---------------------
Confidence 84 1479999999888875411 15799999999999964321 1 1 11111
Q ss_pred CCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 231 GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 231 ~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....++++++|||++|. +++++++|.+.+
T Consensus 223 ------~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 223 ------ALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ------HHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 000124579999999998 999999998764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=174.03 Aligned_cols=154 Identities=22% Similarity=0.220 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh----------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------- 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------- 132 (268)
+.++|+++|.+|||||||+|+|++..+.. +..++++.......+...+ ..+.+|||||+.++..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v----~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV----GNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE----EECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc----CCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHH
Confidence 46799999999999999999999987522 2233333333333344444 4789999999988762
Q ss_pred hHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
....|+ +.+|++|+|+|+++. +....+...+.. .++|+++|+||+|+..........+.+.+
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~----~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------ 139 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNL----ERNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSA------ 139 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGH----HHHHHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHH------
T ss_pred HHHHHHhhcCCCEEEEEecCCCh----HHHHHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHH------
Confidence 123343 789999999999984 344444444443 47899999999998643321111122221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -----------------------------~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 140 -----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp -----------------------------HHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred -----------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 112479999999999 9999999988764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=170.81 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~ 136 (268)
+.++|+++|++|||||||+|+|++..+..+. .|+.+.......+...+ ..+.+|||||+..+... ...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~----~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN----WPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE----CTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC----CCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHH
Confidence 4578999999999999999999998763222 22222222222222333 68999999999887652 345
Q ss_pred hc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+ ..+|++++|+|+++. +....++..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 78 ~~~~~~~d~ii~V~D~t~~----~~~~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---------- 137 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNP----EQSLYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQK---------- 137 (258)
T ss_dssp HHHHSCCSEEEEEEETTSC----HHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHH----------
T ss_pred HHhhcCCCEEEEEeCCCch----hhHHHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHH----------
Confidence 55 589999999999986 334455555554 57999999999998543221111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 138 -------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 138 -------------------------HLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp -------------------------HHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------HcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 113579999999998 999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=171.24 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~ 136 (268)
..++|+++|++|||||||+|+|++........+ +++.......+.. ...+.+|||||+..+. .....
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p----g~tv~~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~e~v~~~ 74 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP----GVTVERKSGLVKK---NKDLEIQDLPGIYSMSPYSPEAKVARD 74 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS----CCCCSCEEEECTT---CTTEEEEECCCCSCSSCSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC----CCcEEEEEEEEec---CCeEEEEECCCcCccCCCChHHHHHHH
Confidence 356899999999999999999998764322222 2111111111222 3689999999998876 34556
Q ss_pred hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+. .+|++++|+|+++. +....|...+.. .+.|+++|+||+|+..........+.+.+
T Consensus 75 ~~~~~~~d~vi~V~D~t~~----e~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------- 134 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATNL----ERNLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSY---------- 134 (272)
T ss_dssp HHHTTCCSEEEEEEEGGGH----HHHHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHH----------
T ss_pred HHhcCCCCEEEEEecCCch----HhHHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHH----------
Confidence 665 69999999999884 444555555554 58899999999998543211111111221
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 -------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 135 -------------------------HLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -------------------------HHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -------------------------HcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998865
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=176.05 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-Cchh--------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-RLRP-------- 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-~~~~-------- 132 (268)
+...+|+++|.+|||||||+|+|++..+. ..+..+.++.......+.++| ..+.+|||||+. ++..
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a---~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~ 315 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRA---IVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIE 315 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBC---CCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCC---ccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHH
Confidence 34689999999999999999999987641 122223333333333344455 579999999998 6542
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
....+++.+|++|+|+|++++ .+.... +.+ +.+ .+.|+++|+||+|+......+++.+ .
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~-~s~~~~-~il-~~l-------~~~piivV~NK~DL~~~~~~~~~~~--------~--- 374 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSP-LDEEDR-KIL-ERI-------KNKRYLVVINKVDVVEKINEEEIKN--------K--- 374 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSC-CCHHHH-HHH-HHH-------TTSSEEEEEEECSSCCCCCHHHHHH--------H---
T ss_pred HHHHHhhcccEEEEEecCCCC-CCHHHH-HHH-HHh-------cCCCEEEEEECcccccccCHHHHHH--------H---
Confidence 245688999999999999987 455432 222 222 4789999999999975433222211 0
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ...++++++||++|+ +++|+++|.+.+
T Consensus 375 -----------------------~---~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 375 -----------------------L---GTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -----------------------H---TCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred -----------------------h---cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 112368999999999 999999998753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=174.88 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=114.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc---cceeecc-----ccceEEeec---cccc---CCceeeEEEEeCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEP-----NEDTFVLHS---ESTK---KGKIKPVHLVDVPG 126 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~---~~~~~~~-----~~~~~~~~~---~~~~---~~~~~~~~i~DtpG 126 (268)
..+.++|+++|++|+|||||+++|++...... ...+... ....+.... .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 35678999999999999999999998543210 0001000 000000000 0001 11125899999999
Q ss_pred CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 127 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
|++|...+..++..+|++|+|+|++++ .++.+..+++..+... ...|+++|+||+|+.......+..+.+.+.+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~-~~~~qt~~~~~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEP-FPQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4567777777655432 3458999999999975432222222222111
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.. .....++++++||++|+ +++|+++|.+.+++
T Consensus 159 ~~-----------------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 159 KG-----------------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred Hh-----------------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 10 00234689999999999 99999999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=156.81 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=117.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++++++|++|||||||++++.+..+...+. ++.+.......+.++|..+.+.+|||+|++++...+..+++.+++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 4789999999999999999999987643332 233333333445567766788899999999999888999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|..+. .+++.+..|+..+.... ..+.|+++++||+|+.... ..++... +..
T Consensus 105 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~~----------------- 162 (191)
T 1oix_A 105 ALLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARA-FAE----------------- 162 (191)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHH-HHH-----------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHH-HHH-----------------
Confidence 9999999986 56666777776654432 2578999999999997533 2222111 111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||+++. +++++++|.+.+
T Consensus 163 ------------------~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 ------------------KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123578999999998 999999998764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-23 Score=160.57 Aligned_cols=140 Identities=35% Similarity=0.527 Sum_probs=105.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC-
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ- 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~- 140 (268)
...++|+++|++|||||||++++.+..+.. ...+..++.+.. . ..+.+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------C-------C--CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccCCCceeee-------e--cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 567899999999999999999999987643 222333332211 1 22578999999999988888877765
Q ss_pred ---CCEEEEEEeCC-CCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 141 ---AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 141 ---~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
+|++|+|+|++ +. .++.....|+..++..... ...+.|+++|+||+|+......+++.+.+.++++.++.+
T Consensus 116 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~~ 191 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 191 (193)
T ss_dssp GGGEEEEEEEEETTCCH-HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCEEEEEEECCCCc-hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhhc
Confidence 89999999999 65 6788888888888764221 125899999999999999889999999999888887654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=179.59 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------Cchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------RLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~~~~ 132 (268)
...+|+++|.+|||||||+|++++..+. ..+..++++.......+..++ ..+.+|||||+. .|..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~---~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 248 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV---IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 248 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE---EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce---eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHH
Confidence 4579999999999999999999988652 122223333333333344455 468999999983 3333
Q ss_pred hH-hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHH
Q 024385 133 KL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~-~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~ 209 (268)
.. ..+++.+|++++|+|++++ .+.+.. .|+..+.. .++|+++|+||+|+...... ++..+.+.+.+.
T Consensus 249 ~~~~~~~~~ad~~llv~D~~~~-~s~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~-- 318 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVLDGEEG-IIEQDK-RIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ-- 318 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHHH-HHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG--
T ss_pred HHHHHHHHhCCEEEEEEcCCcC-CcHHHH-HHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc--
Confidence 32 2578899999999999997 555443 45554443 68999999999999865432 233333322111
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ...++++++||++|+ ++++++++.+.
T Consensus 319 ----------------------------~-~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 319 ----------------------------F-LDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp ----------------------------G-GTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred ----------------------------c-CCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 1 123579999999999 99998887654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-23 Score=162.36 Aligned_cols=159 Identities=20% Similarity=0.315 Sum_probs=96.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC-----------CCCchhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG-----------HSRLRPK 133 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG-----------~~~~~~~ 133 (268)
++|+++|++|||||||++++.++.+.....++...... ... .. .+.+||||| ++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~----~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 71 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIE----WK----NHKIIDMPGFGFMMGLPKEVQERIKDE 71 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEE----ET----TEEEEECCCBSCCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEe----cC----CEEEEECCCccccccCCHHHHHHHHHH
Confidence 58999999999999999999998875433332211111 111 11 579999999 4455566
Q ss_pred HhhhccC-CCEEEEEEeCCCCCCCHHHH-HHHHHH--------HHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 134 LDEFLPQ-AAGIVFVVDALEFLPNCSAA-SEYLYD--------ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 134 ~~~~~~~-~d~ii~v~d~~~~~~~~~~~-~~~l~~--------~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+..+++. ++++++|+++.+. .++... ..|... +.... ...+.|+++|+||+|+.... .+..+.+.
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~-~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~~~~~~~ 146 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPIDVEFYQFL--RELDIPTIVAVNKLDKIKNV--QEVINFLA 146 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEET-THHHHHHHHHHHTTCCCHHHHHHHHH--HHTTCCEEEEEECGGGCSCH--HHHHHHHH
T ss_pred HHHHHHhhhccCCEEEEEEcc-hhhhhHHHhhhccCccHHHHHHHHHH--HhcCCceEEEeehHhccCcH--HHHHHHHH
Confidence 6667665 5544444444444 345554 333321 11111 12689999999999997653 22222222
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++ . .|. ....++++|||++|+ +++++++|.+.+
T Consensus 147 ~~~~---~-----------------------~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 147 EKFE---V-----------------------PLS--EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHT---C-----------------------CGG--GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhh---h-----------------------hhh--ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 1111 0 010 013468999999998 999999998764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=181.61 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEe----ecccccCCceeeEEEEeCCCCCCchhhHhhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVL----HSESTKKGKIKPVHLVDVPGHSRLRPKLDEF 137 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 137 (268)
....||+++|.+|||||||+++++++.+.....++.......... .......+..+.+.+|||||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 456899999999999999999999988754333333222111110 1111222334789999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+........ +.+.+ .
T Consensus 119 l~~~d~ii~V~D~s~~----~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~----~-------- 176 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINE----R-------- 176 (535)
T ss_dssp HHSSEEEEEEECGGGG----GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHH----H--------
T ss_pred ccCCcEEEEEEeCCCc----hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHH----H--------
Confidence 9999999999999875 44566666666542 5799999999999976443211 11111 0
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+++++++||++|+ +++++++|.+.+
T Consensus 177 ------------------~~--~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 177 ------------------FP--AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp ------------------CG--GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ------------------HH--hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 00 112369999999999 999999998765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=166.56 Aligned_cols=154 Identities=22% Similarity=0.245 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh------hHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------KLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~~~~ 136 (268)
+.++|+++|++|||||||+|+|++..+..+ ..++.+...........+ ..+.+|||||+.++.. ....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----NWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----ECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHH
Confidence 457999999999999999999998875322 223333333333334445 4799999999988766 4556
Q ss_pred hc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+ ..+|++++|+|+++. .....++..+... ...|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~~~~d~vi~v~D~~~~----~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------- 136 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCL----MRNLFLTLELFEM-----EVKNIILVLNKFDLLKKKGAKIDIKKMRK---------- 136 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGH----HHHHHHHHHHHHT-----TCCSEEEEEECHHHHHHHTCCCCHHHHHH----------
T ss_pred hhhccCCcEEEEEecCCcc----hhhHHHHHHHHhc-----CCCCEEEEEEChhcCcccccHHHHHHHHH----------
Confidence 66 689999999999985 4455555555542 23999999999997542211111111221
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 137 -------------------------~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 137 -------------------------ELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp -------------------------HHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------HcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998753
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=171.77 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=102.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cccc-------------------------ceeeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGT-------------------------VTSMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++..- .... .....++.+.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4568999999999999999999965421 0000 000011122222122223333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
..+.+||||||++|...+..+++.+|++|+|+|++++.. .+ .+..+.+..+.. .++| +++|+||+|
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~D 166 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMD 166 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCC
Confidence 689999999999999999999999999999999998621 11 133333333332 4666 999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
+......++..+.+.+++..+..... |.. ..+++++++||++|+ +++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g---------------------~~~-~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVG---------------------FNP-KKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhc---------------------ccc-cCCeeEEEeeccCCccccc
Confidence 96543222223333333333211100 100 125789999999998 877
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=175.12 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=96.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------ 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------ 135 (268)
+...+|+++|++|+|||||+|+|++..+. ..+..++++.......+.++| ..+.+|||||+.++.....
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a---~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~ 296 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRA---IVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVER 296 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBS---CCSCCTTCCHHHHHHEEEETT--EEEEECC------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcc---cccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHH
Confidence 45788999999999999999999986541 122223333333333344455 6789999999876554433
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.+|++++|+|++++ .+... ..++..+ .+.|+++|+||+|+.......
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~-~~~~~-~~i~~~l--------~~~piivV~NK~Dl~~~~~~~----------------- 349 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATG-WTTGD-QEIYEQV--------KHRPLILVMNKIDLVEKQLIT----------------- 349 (462)
T ss_dssp --CCCCSCSEEEEEEETTTC-SCHHH-HHHHHHH--------TTSCEEEEEECTTSSCGGGST-----------------
T ss_pred HhhhhhcCCEEEEEeccCCC-CCHHH-HHHHHhc--------cCCcEEEEEECCCCCcchhhH-----------------
Confidence 367889999999999986 33322 3333332 347999999999997542110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+....+++++||++|+ +++|+++|.+.+
T Consensus 350 ------~---------------~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 350 ------S---------------LEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp ------T---------------CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------H---------------HHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 1111234579999999999 999999998865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=178.03 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hhhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RPKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~~~~ 135 (268)
++|+++|.+|||||||+|+|+++.. ...+..|++++........++| ..+.+|||||++.. +....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 76 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---AIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTL 76 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---ceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHH
Confidence 5899999999999999999998764 2223334444444444455566 47899999998752 34567
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.+++.+|++++|+|++++ - .....++..+++. .++|+++|+||+|+... ...... ..+
T Consensus 77 ~~~~~ad~il~V~D~~~~-~--~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-----~~~~~~---~~~------ 134 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRG-I--TKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREVK---PEL------ 134 (439)
T ss_dssp HHHTTCSEEEEEEETTTC-C--CHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHTH---HHH------
T ss_pred HHHHhCCEEEEEEECCCC-C--CHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-----cHHHHH---HHH------
Confidence 789999999999999886 2 2233445555443 47899999999998421 001110 111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+. ..+++++||++|. +++|+++|.+.++
T Consensus 135 ---------------------~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 135 ---------------------YSLG-FGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp ---------------------GGGS-SCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------------------HhcC-CCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 0000 1147899999999 9999999987653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=178.46 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~~ 132 (268)
...+|+++|.+|+|||||+|++++... ...+..++++.......+..++ ..+.+||||| ++.+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~---~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER---VIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT---EEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc---cccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHH
Confidence 467999999999999999999997653 1112222222222222333445 4789999999 555555
Q ss_pred hHh-hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 133 KLD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
... .+++.+|++|+|+|++++ +.....++...+.. .++|+++|+||+|+..... .++..+.+.+.+.
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~---~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 338 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEG---IIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ-- 338 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG--
T ss_pred HHHHHHHhhCCEEEEEEeCCCC---cCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc--
Confidence 443 478899999999999986 22333344444332 6799999999999986443 2333333332111
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...++++++||++|+ ++++++++.+.+
T Consensus 339 ----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 339 ----------------------------F-LDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ----------------------------G-GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----------------------------c-CCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 1 123579999999999 999999987653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=176.28 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=114.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc------------ccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES------------TKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~DtpG~~~ 129 (268)
.+.++|+++|++|+|||||+++|++..+.......++++.+........ ........+++||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4678999999999999999999987644221111222223322222110 0001112589999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------H
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 195 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~ 195 (268)
|...+..+++.+|++|+|+|++++. ..+....+..+.. .++|+++|+||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv--~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc--cHhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9999999999999999999999962 1223333333332 6889999999999975321 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+.+.+...+..+...-.... ....... ........++++++||++|. +++|+++|...+
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~g---l~~e~~~-------~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEG---FESERFD-------RVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---CEEEEGG-------GCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---cchHHHH-------HHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 3333444333332221111100 0000000 01112456799999999999 999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-22 Score=163.65 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=93.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce----eeccccceEEeecccccCCceeeEEEEeCCCCCC-------c
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------L 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~ 130 (268)
...++|+++|.+|+|||||+|+|++........+ ...++.+.......+..+|..+.+.+|||||+.+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4568999999999999999999887654221110 0123333333334445566557899999999843 2
Q ss_pred hhhH-------hhhccC-------------CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 131 RPKL-------DEFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 131 ~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.... ..|++. +|+++++++.+.. .+......+...+. .++|+++|+||+|+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~--~~~~~d~~~l~~l~------~~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH--GLKPLDIEFMKRLH------EKVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS--SCCHHHHHHHHHHT------TTSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC--CCCHHHHHHHHHHh------ccCCEEEEEeccCCC
Confidence 3322 344432 7899999988763 23334344434333 378999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.........+.+.+.+. ..+++++++||++|+ ++++.++|.+.+|
T Consensus 158 ~~~e~~~~~~~i~~~l~--------------------------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQ--------------------------------EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCC-----------CHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHH--------------------------------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 54333333333333332 123467888999998 9999999988765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-22 Score=174.65 Aligned_cols=153 Identities=21% Similarity=0.288 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhHh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKLD 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~~ 135 (268)
.++|+++|.+|||||||+|+|++..+. .....+++++........+.+ ..+.+|||||++ .++....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~ 77 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAE 77 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce---eecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHH
Confidence 368999999999999999999987652 222333444344444455555 579999999986 4566677
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.+++.+|++|+|+|+.++ .+ ....++..++.. .++|+++|+||+|+.....
T Consensus 78 ~~~~~ad~il~vvD~~~~-~~--~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~--------------------- 128 (436)
T 2hjg_A 78 IAMDEADVIIFMVNGREG-VT--AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA--------------------- 128 (436)
T ss_dssp HHHHHCSEEEEEEETTTC-SC--HHHHHHHHHHTT-----CCSCEEEEEECCCC--------------------------
T ss_pred HHHHhCCEEEEEEeCCCC-CC--HHHHHHHHHHHH-----cCCCEEEEEECccCccchh---------------------
Confidence 889999999999999987 33 334566666653 6889999999999864210
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+ |..+. ..+++++||++|. +++|++++.+.++
T Consensus 129 ----~~~~------------~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 ----NIYD------------FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ----CCCS------------SGGGS-SCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ----hHHH------------HHHcC-CCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 0000 11111 1157899999999 9999999988764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=162.62 Aligned_cols=158 Identities=20% Similarity=0.308 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-C--------chhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-R--------LRPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-~--------~~~~ 133 (268)
+..+|+++|++|||||||+|++++..+. ..+..+++++......+..++ ..+.+|||||+. . +...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~---i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHH
Confidence 3458999999999999999999998752 222223222221111122233 689999999997 3 2233
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++++|+|+++. + ....++...+.. .+.|+++|+||+|+... .....+.+ +.+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~~-~---~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~~l----~~l~~-- 144 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTRW-T---PDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLPHL----QFLAS-- 144 (301)
T ss_dssp TTSCCCCEEEEEEEEETTCC-C---HHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHHHH----HHHHT--
T ss_pred HHHHHhcCCEEEEEEeCCCC-C---HHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHHHH----HHHHH--
Confidence 45678889999999999763 3 333455555442 57899999999999752 22222222 22200
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+...++++||++|+ ++++.++|.+.++
T Consensus 145 -------------------------~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 145 -------------------------QMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp -------------------------TSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred -------------------------hcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 0111268999999998 9999999998765
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=177.32 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--cccc-----cceeec----cccceEEeeccccc---CCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-----TVTSME----PNEDTFVLHSESTK---KGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~-----~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~ 128 (268)
+.++|+++|+.|+|||||+++|+... +... ...+.. .+.+.......+.+ ++..+.+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999997632 1100 000000 00110000011111 4555799999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|...+..+++.+|++|+|+|++++ .+.+....|.... . .++|+++|+||+|+.... .++..+.+.+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~~~-~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg- 152 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYTAM-E------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG- 152 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHHHH-H------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHH-H------CCCCEEEeeeccCccccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999997 4455555544333 2 578999999999998654 3333333322110
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
....+++++||++|. +++|+++|.+++++
T Consensus 153 -------------------------------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 -------------------------------IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -------------------------------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -------------------------------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 001137899999998 99999999998874
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-23 Score=183.53 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|+|||||+++|.+..+.....++++...+. ..+...+ ...+++||||||++|...+..+++.+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~----~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~a 76 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGA----FLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVT 76 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTS----CCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeE----EEEEeCC-CCEEEEEECCChHHHHHHHHHHHccC
Confidence 367899999999999999999999876533222222222211 1122211 14789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ . .......+..+.. .++|+++|+||+|+...... ...+.+.. .
T Consensus 77 D~vILVVDa~dg-~-~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~-~v~~~l~~----~------------ 131 (537)
T 3izy_P 77 DIVILVVAADDG-V-MKQTVESIQHAKD------AHVPIVLAINKCDKAEADPE-KVKKELLA----Y------------ 131 (537)
T ss_dssp SSCEEECBSSSC-C-CHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCC-SSSSHHHH----T------------
T ss_pred CEEEEEEECCCC-c-cHHHHHHHHHHHH------cCCcEEEEEecccccccchH-HHHHHHHh----h------------
Confidence 999999999996 3 3444444444443 57899999999999754321 11111110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ +....+...++++++||++|+ +++|+++|...+
T Consensus 132 ------~-----~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 ------D-----VVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ------T-----SCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ------h-----hhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0 001222345789999999999 999999998764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=167.13 Aligned_cols=172 Identities=18% Similarity=0.147 Sum_probs=102.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCC---cccccce--eeccccceEEe---------ecccccC--Cc----eeeEE
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS---THQGTVT--SMEPNEDTFVL---------HSESTKK--GK----IKPVH 120 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~---------~~~~~~~--~~----~~~~~ 120 (268)
+....+|+++|+.++|||||+++|++.. +...... |+......... ....... +. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567899999999999999999998543 2111111 11111000000 0000001 11 25899
Q ss_pred EEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH
Q 024385 121 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 200 (268)
Q Consensus 121 i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 200 (268)
+||||||++|...+...+..+|++|+|+|++++ ....+..+.+..+... ...|+++|+||+|+.......+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~l-----~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEP-CPQPQTKEHLMALEIL-----GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-SSCHHHHHHHHHHHHT-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-CCCchhHHHHHHHHHc-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988888889999999999999986 2234444444433221 3358999999999986543222222
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.+.++.. ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~i~~~l~~~-----------------------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGT-----------------------------IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTS-----------------------------TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhc-----------------------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222211100 0234689999999998 9999999998765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=175.15 Aligned_cols=162 Identities=19% Similarity=0.315 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccc-----cce----------eeccccceEEeecccccCCceeeEEEEeCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-----TVT----------SMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
+.++|+++|+.|+|||||+++|+.. .+... ... ++........+.. .++..+.+++||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~---~dg~~~~inliDTP 81 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA---KDGNTYKLHLIDTP 81 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC---TTSCEEEEEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc---CCCCeEEEEEEECC
Confidence 4578999999999999999999752 11100 000 1111111111110 14555789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
||.+|...+..+++.+|++|+|+|++++ ...+....|... .. .++|+++|+||+|+.... .++..+.+.+.
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~a-~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWKA-VE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHHH-HH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHH-HH------CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 9999999999999999999999999997 455555554433 32 688999999999997653 33333332221
Q ss_pred HHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 206 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+ + ....+++++||++|. +++|+++|.+++|+
T Consensus 153 l---------------------g-----------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 153 L---------------------G-----------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp S---------------------C-----------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred h---------------------C-----------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 0 0 001147999999998 99999999998874
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=172.36 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc-------------cccee-----eccccceEEeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------------GTVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+...... ..... ..++.+.......+.+.+ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 467899999999999999999996211000 00000 000000000001112233 6899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|||+.+|......+++.+|++|+|+|++++ ..... ...+..+.. .++|+++|+||+|+....
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t-~~~~~~~~~------~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKG-VEPRT-IKLMEVCRL------RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHH-HHHHHHHHT------TTCCEEEEEECTTSCCSC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999999997 33333 333433332 678999999999997543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=162.75 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=105.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~ 132 (268)
...++++++|++|||||||+|+|.+..+... .....+..... ......+ ..+.+|||||+.+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~---~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA---SYPFTTRGINV-GQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQ 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE---CCTTCSSCEEE-EEEEETT--EEEEEEECTTTSSSCSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC---CCCCeeeceeE-EEEEecC--ceEEEEeCCCccccchhhhhHHHHH
Confidence 3568999999999999999999998764211 11111111111 1111222 578999999986532 1
Q ss_pred hHhhhccCCCEEEEEEeCCCCCC--CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLP--NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
....+...+|++++|+|+++. . ++.....++..+.... .+.|+++|+||+|+......++. ...+.
T Consensus 239 ~~~~~~~~ad~illV~D~s~~-~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~~~~~~~~----~~~~~--- 306 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEH-CGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENIKRL----EKFVK--- 306 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCT-TSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCCHHHHHHH----HHHHH---
T ss_pred HHHHHHhcCCEEEEEEeCCcc-ccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCChHHHHHH----HHHHH---
Confidence 122344579999999999886 4 5777788887776542 37999999999999754222111 11111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 307 -----------------------------~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 -----------------------------EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp -----------------------------HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=173.57 Aligned_cols=165 Identities=19% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC----cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
+..+|+++|++|+|||||+++|++.. ... ......++.+.......+..++ ..+.+||||||++|...+..++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~-~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDK-LPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCccccccc-ccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 35799999999999999999999865 110 0001111111111111122233 6899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
..+|++|+|+|++++. ..+..+.+..+.. .++|+++|+||+|+......+++.+.+.+.+.. .
T Consensus 95 ~~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~----~----- 157 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGP--KTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS----T----- 157 (482)
T ss_dssp TSCCEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH----S-----
T ss_pred hhCCEEEEEEecCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhh----h-----
Confidence 9999999999999862 2344444443322 578999999999997532223333333322221 0
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+++++++||++|+ +++|+++|.+.+
T Consensus 158 ------------------~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 158 ------------------H-NLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp ------------------S-SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------c-ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 0 0124589999999999 999999998864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-22 Score=173.57 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
...++|+++|++|+|||||++++++..+.. .+..+.++.......+...+. ..+.+|||||+.++... .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~---~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI---VSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc---cCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 467899999999999999999999887521 111112221212222223332 27899999999887544 4
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++|+|+|+.. ......|+..+.. .+.|+++|+||+|+......+ ..+.
T Consensus 108 ~~~l~~aD~vllVvD~~~----~~~~~~~l~~l~~------~~~piIvV~NK~Dl~~~~~~~-~~~~------------- 163 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAP----TPYEDDVVNLFKE------MEIPFVVVVNKIDVLGEKAEE-LKGL------------- 163 (423)
T ss_dssp HHHHTSCSEEEEECSSSC----CHHHHHHHHHHHH------TTCCEEEECCCCTTTTCCCTH-HHHH-------------
T ss_pred HHHHhcCCEEEEEEeCCC----hHHHHHHHHHHHh------cCCCEEEEEeCcCCCCccHHH-HHHH-------------
Confidence 568899999999999933 2445566665554 588999999999998765431 1111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.. ..+++++++||++|. +++++++|.+.++
T Consensus 164 ---------------------l~~-~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 164 ---------------------YES-RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp ---------------------SSC-CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred ---------------------HHH-HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 111 123578999999998 9999999999874
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=166.65 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=107.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC---cccccce--eeccccceEEe---------ecccccC--Cc----eeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS---THQGTVT--SMEPNEDTFVL---------HSESTKK--GK----IKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~---------~~~~~~~--~~----~~~~~i 121 (268)
....+|+++|++|+|||||+++|++.. +...... |+........+ ....... +. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 445799999999999999999998542 2111111 11111111111 0000001 11 257999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
||||||++|.......+..+|++|+|+|++++ ....+..+.+..+... ...|+++|+||+|+.......+..+.
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHc-----CCCcEEEEEECccCCCHHHHHHHHHH
Confidence 99999999988888888999999999999986 2233444444333221 34589999999999754221111122
Q ss_pred HHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 202 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+.+.++. .....++++++||++|+ +++|+++|.+.+++
T Consensus 162 i~~~l~~-----------------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 162 IKEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHh-----------------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2111110 00234689999999999 99999999987753
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-21 Score=170.23 Aligned_cols=171 Identities=22% Similarity=0.205 Sum_probs=108.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--------Cccccccee-----eccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+...+|+++|++|+|||||+++|++. .+....... .....+..... ..+......+.+||||||+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eEeccCCeEEEEEECCChH
Confidence 45689999999999999999999873 111100000 00111111001 1112222689999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|...+..+++.+|++|+|+|++++ . ..+..+++..+.. .++| +++|+||+|+... .+ ..+.+..++.
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g-~-~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~~--~~-~~~~~~~~~~ 155 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADG-P-MPQTREHILLARQ------VGVPYIVVFMNKVDMVDD--PE-LLDLVEMEVR 155 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTC-C-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCCC--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-C-cHHHHHHHHHHHH------cCCCEEEEEEECccccCc--HH-HHHHHHHHHH
Confidence 9999999999999999999999986 3 4455566654443 5678 8999999999742 11 1122222222
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-------------------chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~p 268 (268)
.+..... + ...+++++++||++|. +++|+++|.+++||
T Consensus 156 ~~l~~~~---------------------~--~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 156 DLLNQYE---------------------F--PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHTT---------------------S--CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhc---------------------c--cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2211100 0 0124589999999984 67899999887763
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=166.97 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC-------ccccc-c----eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGT-V----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+..+|+++|++|+|||||+++|++.. +.... . .......+... ....+......+.+||||||++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999998631 11000 0 00011111110 01112222368999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
...+..+++.+|++|+|+|++++ . ..+..+++..+.. .++| +++|+||+|+... .+ ..+.+..++.++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g-~-~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~~--~~-~~~~~~~~~~~~ 148 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDG-P-MPQTREHLLLARQ------IGVEHVVVYVNKADAVQD--SE-MVELVELEIREL 148 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCSC--HH-HHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCC-C-CHHHHHHHHHHHH------cCCCeEEEEEECcccCCC--HH-HHHHHHHHHHHH
Confidence 88999999999999999999996 3 3444455543332 5778 7899999999752 11 112222222222
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcCC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 268 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 268 (268)
..... +. ...++++++||++|. +++|+++|.+++++
T Consensus 149 l~~~~---------------------~~--~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 149 LTEFG---------------------YK--GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHTT---------------------SC--TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHcC---------------------CC--cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 11100 00 124689999999963 78999999987763
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=169.95 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=107.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|+|||||+++|.+..+......+++...+.+ .+..++ ..+++||||||++|...+..+++.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~----~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~a 75 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY----HVETEN--GMITFLDTPGHAAFTSMRARGAQAT 75 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC----CCCTTS--SCCCEECCCTTTCCTTSBCSSSBSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE----EEEECC--EEEEEEECCCcHHHHHHHHHHHhhC
Confidence 4678999999999999999999987655332222222222221 122334 4789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++. ..+..+.+..+.. .++|+++++||+|+...... . +
T Consensus 76 D~aILVVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~-~-----------------------v 123 (501)
T 1zo1_I 76 DIVVLVVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPD-R-----------------------V 123 (501)
T ss_dssp SSEEEEEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCC-C-----------------------T
T ss_pred CEEEEEeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHH-H-----------------------H
Confidence 9999999998851 2222233333322 67899999999999753210 0 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...+. ...+.-..+...++++++||++|+ +++|+++|...
T Consensus 124 ~~~l~----~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 124 KNELS----QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCCC----CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHHH----HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 00000 000000112235799999999999 99999998754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=165.96 Aligned_cols=174 Identities=21% Similarity=0.233 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccccccee-------------------------eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTS-------------------------MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 114 (268)
+..++|+++|++|+|||||+++|+.. .+....... ...+.+.......+. .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--T 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--C
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--c
Confidence 45689999999999999999999864 332111000 001111111111122 2
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHH-------HHHHHHHhcCCccCCC-CcEEEEeec
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-------EYLYDILTNSTVVKKK-IPVLICCNK 186 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~-~piivv~nK 186 (268)
..+.+.+||||||++|...+..+++.+|++|+|+|++++ +++... +.+..... .+ .|+++|+||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~~~------~~~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILAKT------MGLDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHHHH------TTCTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHHHH------cCCCeEEEEEEc
Confidence 236899999999999999999999999999999999984 455332 22222221 34 469999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch---------
Q 024385 187 TDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------- 256 (268)
Q Consensus 187 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~--------- 256 (268)
+|+......++..+.+.+++..+..... |. ..+++++++||++|+ +.
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~--~~~~~~i~iSA~~g~~v~e~~~~~~~~ 210 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYG---------------------FN--TNKVRFVPVVAPSGDNITHKSENMKWY 210 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTT---------------------CC--CTTCEEEECBTTTTBTTTBCCSSCTTC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcC---------------------CC--cCCceEEEeecccCccccccccccccc
Confidence 9998642111111222222322211100 00 124689999999997 65
Q ss_pred ---hHHHHHHhhcCC
Q 024385 257 ---QVEQFIREQVKP 268 (268)
Q Consensus 257 ---~l~~~l~~~~~p 268 (268)
.|+++|....+|
T Consensus 211 ~g~~Ll~~l~~~~~p 225 (435)
T 1jny_A 211 NGPTLEEYLDQLELP 225 (435)
T ss_dssp CSCCHHHHHTTCCCC
T ss_pred cchhHHHHHhccCCC
Confidence 677877765443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-21 Score=156.66 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=98.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccc-cceEEeecccccCCceeeEEEEeCCCCCCchhh-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN-EDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------- 133 (268)
.+..+|+++|++|||||||+|+|++..... .+..++ ++.........+.+ ..+.+|||||+.++...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFE---SKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSC---CCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHH
Confidence 467899999999999999999999876321 111121 11111111223344 58999999998765322
Q ss_pred ----HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee-cCCCCCCCCHHHHHHH-HHHHHH
Q 024385 134 ----LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN-KTDKVTAHTKEFIRKQ-MEKEID 207 (268)
Q Consensus 134 ----~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~~~~~-l~~~l~ 207 (268)
...+++.+|++|+|+|++...........++....... ...|+++|+| |+|+... ........ -...+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED----AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG----GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch----hhccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 23477899999999999874111223334444443211 2456666666 9999853 32221110 001111
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...+.. ....+..+++||++|. +++++++|.+.+
T Consensus 170 ~~~~~~~~-----------------------~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 170 KLVAACGG-----------------------RICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHTTT-----------------------CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----------------------eEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 11111100 0000011788999998 999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=166.14 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---------- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---------- 133 (268)
..+++++|++|||||||+|++.+... ...+..++++.......+.++| ..+.+|||||+.+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~---~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKER---ALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT---EEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcc---cccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence 46999999999999999999998764 1222223333333334445566 46899999998543221
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
...+++.+|++++|+|++++ .+... .++...+.. .++|+++|+||+|+..... .+++.+.+.+.
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~-~~~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~---- 322 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQG-ITRQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREK---- 322 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH----
T ss_pred HHHHHHHhhCCEEEEEEeCCCC-CCHHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHH----
Confidence 23467789999999999986 33332 334344332 6899999999999975432 33333332221
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+.. ....+++++||++|. +++|++.+.+.
T Consensus 323 --------------------------~~~-~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 323 --------------------------LYF-IDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp --------------------------CGG-GTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --------------------------hcc-CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 111 123479999999998 99999888764
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=167.42 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=97.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccccccee-------------------------eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVTS-------------------------MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++.. +......+ ..++.+.......+ ..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence 567899999999999999999997652 11100000 00011110001111 12
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH-----HHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-----SAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+.+.||||||+++|...+..+++.+|++|+|+|++++ .+. .....+...+.... ...|+++|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g-~~~~~~~~~~qt~e~~~~~~~~----~~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN-AFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHT----TCCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC-ccccccchhhhHHHHHHHHHHc----CCCcEEEEEECcCc
Confidence 236899999999999999999999999999999999986 211 12222222222221 23569999999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 190 VTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 190 ~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
.... ..+++.+.+...+..+ ......++|+++||++|+ +++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~---------------------------g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDI---------------------------GFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHH---------------------------TCCGGGEEEEECCSSSCTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHc---------------------------CCCcccceEEEEeeecCCCccc
Confidence 7632 1222333333322221 001235789999999998 764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-21 Score=168.50 Aligned_cols=155 Identities=21% Similarity=0.284 Sum_probs=101.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC--------CCCchhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG--------HSRLRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG--------~~~~~~~ 133 (268)
...++|+++|.+|||||||+|+|++..+. .....+..+.........+.+ ..+.+||||| ++.++..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~---~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCS--SCCEEECCCC------CCHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc---ccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHH
Confidence 45689999999999999999999987652 222233344333333344445 5899999999 5556677
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++|+|+|+.++ +.....++..++.. .++|+++|+||+|+..... .
T Consensus 96 ~~~~~~~ad~il~VvD~~~~---~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~------~------------ 149 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA------N------------ 149 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSC---SCHHHHHHHHHHTT-----CCSCEEEEEECC--------------------------
T ss_pred HHhhHhhCCEEEEEEeCCCC---CChHHHHHHHHHHH-----cCCCEEEEEECccchhhhh------h------------
Confidence 78889999999999999876 44556677777764 6899999999999853210 0
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+ |..+.. ...+++||++|. +++|++++.+.++
T Consensus 150 -------~~e------------~~~lg~-~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 150 -------IYD------------FYSLGF-GEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --------CC------------SGGGSS-SSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred -------HHH------------HHHcCC-CceEEeecccccchHHHHHHHHhhcc
Confidence 000 000111 135689999998 9999999987653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=161.62 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceee-----ccccc--eE-----------------Eee-cccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSM-----EPNED--TF-----------------VLH-SESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~-----~~~~~--~~-----------------~~~-~~~~~~~~ 115 (268)
...+|+++|++|+|||||+++|+++.. .......+ .+.+. .+ +.. ........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 457999999999999999999986531 10000000 00000 00 000 00001112
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC-cEEEEeecCCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVT 191 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-piivv~nK~Dl~~ 191 (268)
...+.+||||||++|...+..+++.+|++|+|+|++++ . .....+++..+.. .+. |+++|+||+|+..
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~-~~qt~~~l~~~~~------~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-V-QTQTRRHSYIASL------LGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-C-cHHHHHHHHHHHH------cCCCeEEEEEEcCcCCc
Confidence 26799999999999999999999999999999999987 2 3445555543332 344 6999999999975
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=160.83 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|+|||||+++|+. .-.|+.. .... +...+ ..+++||||||++|......+++.+|++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~--~~~~----~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ai 88 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDI--TMYN----NDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAV 88 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSS--EEEE----ECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEe--eEEE----EecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEE
Confidence 999999999999999999982 1122221 1111 12233 57999999999999988889999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEee-cCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCN-KTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+| +.+ ...+..+++..+.. .++|. ++++| |+|+ .....++. .++++.+
T Consensus 89 lVvd-~~g--~~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~----~~~i~~~-------------- 140 (370)
T 2elf_A 89 LCIP-PQG--LDAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDEL----KAKLKVI-------------- 140 (370)
T ss_dssp EEEC-TTC--CCHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHH----HHHHHHH--------------
T ss_pred EEEc-CCC--CcHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHH----HHHHHHH--------------
Confidence 9999 654 35566666554443 46777 89999 9999 42211212 2222222
Q ss_pred cccCCCCCCCeeeccC-CceeEEEE--eeecc---CC-chhHHHHHHhhcC
Q 024385 224 DFTLGIPGQAFSFSQC-HNKVSVAE--ASGLT---GE-ISQVEQFIREQVK 267 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~-~~~~~~~~--~Sa~~---g~-i~~l~~~l~~~~~ 267 (268)
+... ...+++++ +||++ |+ +++|+++|.+.++
T Consensus 141 ------------l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 141 ------------TSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp ------------TTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred ------------HHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 0000 12468999 99999 98 9999999988754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=159.66 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCC----CchhhHhhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----RLRPKLDEF 137 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----~~~~~~~~~ 137 (268)
..+|+++|.+|||||||+++|++..... ...++..++.+... +++. ..+.+|||||+. .+......|
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~------~~~~-~~~~l~DtPG~i~~a~~~~~l~~~f 230 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE------TDDG-RSFVMADLPGLIEGAHQGVGLGHQF 230 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEE------CSSS-CEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEE------eCCC-ceEEEecCCCCcccccccchhHHHH
Confidence 3579999999999999999999875421 12234444433322 2221 478999999953 333343444
Q ss_pred ---ccCCCEEEEEEeCCC---CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 138 ---LPQAAGIVFVVDALE---FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 138 ---~~~~d~ii~v~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
++.+|++|+|+|+++ . ++++....|+.++..... ...++|+++|+||+|+.... +..+.+.+ .
T Consensus 231 l~~i~~~d~ll~VvD~s~~~~~-~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~~---e~~~~l~~---~--- 299 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSGLEGR-DPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEAA---ENLEAFKE---K--- 299 (342)
T ss_dssp HHHHHHCCEEEEEEESSCSSCC-CHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTHH---HHHHHHHH---H---
T ss_pred HHHHHhccEEEEEEECCccccc-ChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCCH---HHHHHHHH---H---
Confidence 455999999999987 4 567888877777766421 11589999999999997421 11111111 1
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ....+++++||++|+ +++|+++|.+.+.
T Consensus 300 ------------------------l---~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 300 ------------------------L---TDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp ------------------------C---CSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ------------------------h---hcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 0 111468999999999 9999999988753
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=163.12 Aligned_cols=123 Identities=21% Similarity=0.161 Sum_probs=67.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCcccc--------------------cceee-----ccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG--------------------TVTSM-----EPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~--------------------~~~~~-----~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|+. +.+... ..... ....+...-...+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4567999999999999999999974 222110 00000 00011000011122233
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CCH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
..+.+||||||++|...+..+++.+|++|+|||++++. .+| .+..+.+..... .++| +++|+||+|
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~D 192 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMD 192 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTT
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECcc
Confidence 68999999999999999999999999999999999861 011 122222322222 5677 999999999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
+...
T Consensus 193 l~~~ 196 (467)
T 1r5b_A 193 EPSV 196 (467)
T ss_dssp STTC
T ss_pred CCCc
Confidence 9653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=162.18 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccc--------------------ee-----eccccceEEeecccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTV--------------------TS-----MEPNEDTFVLHSESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~ 115 (268)
...+|+++|++|+|||||+++|++. .+..... .. .....+.......+ ...
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~--~~~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETP 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--ECS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE--ecC
Confidence 4578999999999999999999864 2211000 00 00111100000011 122
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHH-------HHHHHHHHHHhcCCccCCCCc-EEEEeecC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-------AASEYLYDILTNSTVVKKKIP-VLICCNKT 187 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~p-iivv~nK~ 187 (268)
...+.+||||||++|...+..+++.+|++|+|+|++++ . +. +..+.+..... .++| +++|+||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-~-~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-E-FEAGISKDGQTREHALLAFT------LGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-H-HHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-c-cccccCcchhHHHHHHHHHH------cCCCeEEEEEEcc
Confidence 26899999999999999999999999999999999975 1 22 33333332222 4565 99999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 156 Dl~~ 159 (458)
T 1f60_A 156 DSVK 159 (458)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9973
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-21 Score=174.32 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc--cccc--------------------c-----eeeccccceEEeecccccCCce
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------V-----TSMEPNEDTFVLHSESTKKGKI 116 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 116 (268)
..+|+++|++|+|||||+++|+.... .... . ....++++.......+...+
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~-- 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK-- 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC--
Confidence 45799999999999999999964210 0000 0 00011111111112222233
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CC---HHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~ 190 (268)
..+.|||||||.+|...+..+++.+|++|+|||++++. .. .......+..+.. .++| +|+|+||+|+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccccc
Confidence 68899999999999999999999999999999998741 01 1222233322222 4565 99999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch-------------
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------------- 256 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~------------- 256 (268)
... .+. .+.+..++..+.. .. .+ ....+++++++||++|. ++
T Consensus 329 ~~~-~~~-~~~i~~el~~~l~--~~-----------~g---------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g 384 (592)
T 3mca_A 329 SWS-EDR-FQEIKNIVSDFLI--KM-----------VG---------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384 (592)
T ss_dssp TTC-HHH-HHHHHHHHHHHHT--TT-----------SC---------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCS
T ss_pred ccc-HHH-HHHHHHHHHHHHH--Hh-----------hC---------CCccceEEEEEecccCcccccccccccccccch
Confidence 522 211 2222222332200 00 00 01245789999999998 76
Q ss_pred -hHHHHHHhhcCC
Q 024385 257 -QVEQFIREQVKP 268 (268)
Q Consensus 257 -~l~~~l~~~~~p 268 (268)
.|++.|.+.++|
T Consensus 385 ~~Lle~l~~~~pp 397 (592)
T 3mca_A 385 PTLLSALDQLVPP 397 (592)
T ss_dssp CCHHHHHHTSCCC
T ss_pred HHHHHHHHhhccc
Confidence 799999887765
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=164.61 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=98.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc--e-------------------------eeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--T-------------------------SMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++........ . ...++++.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999998763211000 0 0001111111111112223
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CC---HHHHHHHHHHHHhcCCccCCC-CcEEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKK-IPVLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~-~piivv~nK~D 188 (268)
+.+.|||||||++|...+..+++.+|++|+|||++++. .+ .......+..+.. .+ .|+++|+||+|
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~------lgi~~iIVVvNKiD 316 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS------LGIHNLIIAMNKMD 316 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT------TTCCEEEEEEECTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH------cCCCeEEEEEeccc
Confidence 68999999999999999999999999999999998730 00 1122232222222 34 45999999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 189 KVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 189 l~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
+.... ..+++.+.+...+..+ . ....+++++++||++|+ +++
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~----g-----------------------~~~~~~~~i~vSA~tG~gI~e 361 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDI----G-----------------------FFEDNINWVPISGFSGEGVYK 361 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHH----T-----------------------CCGGGCEEEECCTTTCTTTSS
T ss_pred ccchhHHHHHHHHHHHHHHHHhh----c-----------------------ccccCccEEeeecccCCCccc
Confidence 97632 1222333333322221 0 00235689999999998 764
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=174.16 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=107.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-------ccccc-ce--eeccccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGT-VT--SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
....+|+++|++|+|||||+++|++.. +.... .. ..+.+.+.........+.+....+.+||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 445789999999999999999998641 00000 00 001111111000111222333689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+++.+|++|+|||++++ . ..+..+++..+.. .++| +++|+||+|+... . +..+.+..++..+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdG-v-~~QTrEhL~ll~~------lgIP~IIVVINKiDLv~d--~-e~le~i~eEi~elL 442 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDG-P-MPQTREHILLGRQ------VGVPYIIVFLNKCDMVDD--E-ELLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTC-S-CTTHHHHHHHHHH------HTCSCEEEEEECCTTCCC--H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCcc-C-cHHHHHHHHHHHH------cCCCeEEEEEeecccccc--h-hhHHHHHHHHHHHH
Confidence 9999999999999999999986 2 3344455544332 4678 7999999999752 1 11122222222221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC--------C-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 267 (268)
.... + ....++++++||++| + +++|+++|.++++
T Consensus 443 k~~G---------------------~--~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 443 SQYD---------------------F--PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHTT---------------------S--CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred Hhcc---------------------c--cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1100 0 012468999999999 3 8899999998776
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=149.74 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCe-EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCC---------ch
Q 024385 64 STT-IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR---------LR 131 (268)
Q Consensus 64 ~~~-i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~---------~~ 131 (268)
..+ |+++|++|||||||+|+|++..+... ..+|..+.. ..+.++| ..+.+|||||+.. ++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~------~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR------YAIPINN--RKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE------EEEEETT--EEEEEEECCCBCSSCCGGGHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE------EEEEECC--EEEEEEeCCCchhcCCHHHHHHHH
Confidence 344 99999999999999999998765221 112222222 2233445 4789999999732 22
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCC--CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLP--NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
.. ...+..+|++++|+|++++ . ..... ..+..++.... ..+.|+++|+||+|+.... .......+......+
T Consensus 250 ~t-l~~~~~aD~il~VvD~s~~-~~~~~~~~-~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l 323 (364)
T 2qtf_A 250 VT-LSEAKYSDALILVIDSTFS-ENLLIETL-QSSFEILREIG--VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL 323 (364)
T ss_dssp HH-HHGGGGSSEEEEEEETTSC-HHHHHHHH-HHHHHHHHHHT--CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH
T ss_pred HH-HHHHHhCCEEEEEEECCCC-cchHHHHH-HHHHHHHHHhC--cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh
Confidence 22 2357889999999999886 3 22222 22233333211 1578999999999997643 222111111111110
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+.+++++||++|+ +++|+++|.+.+
T Consensus 324 ---------------------------~--~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 324 ---------------------------Y--SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---------------------------C--SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------------c--CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 0 113467999999998 999999998764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-19 Score=157.19 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=83.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccc-----------cccee---eccccceEEee--cccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----------GTVTS---MEPNEDTFVLH--SESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~-----------~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+... +.. ..... .+...+..... ..+.+.+ +.+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 467899999999999999999998632 100 00000 00011100000 0112233 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
||||.+|......+++.+|++|+|+|++++. .......+. .... .++|+++|+||+|+.... ..+..+.++
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~--~~~t~~~~~-~~~~-----~~ipiivviNK~Dl~~~~-~~~~~~~i~ 159 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV--EDRTRKLME-VTRL-----RDTPILTFMNKLDRDIRD-PMELLDEVE 159 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCS--CHHHHHHHH-HHTT-----TTCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccc--hHHHHHHHH-HHHH-----cCCCEEEEEcCcCCcccc-HHHHHHHHH
Confidence 9999999999999999999999999999872 122233332 2222 588999999999997654 333333333
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=160.27 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=97.8
Q ss_pred cHHhHHHHHHHHHHHhHhhhccCChH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHH
Q 024385 12 GMEQWKKELEEWLNRGIEFINQIPPT-------QLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 12 ~~~~w~~~~~~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l 84 (268)
.+.+|+..+...+.++..++...... ..+......+.... ..+ .....+|+++|.+|+|||||+|+|
T Consensus 16 ~~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~~-----~~l-~~~~~~V~VvG~~naGKSSLlNaL 89 (695)
T 2j69_A 16 RVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIAS-----KNL-QQGVFRLLVLGDMKRGKSTFLNAL 89 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHHH-----HHH-HHCCEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH-----HHh-ccCCCEEEEECCCCCCHHHHHHHH
Confidence 46788888888877777666642210 00000000111111 111 357889999999999999999999
Q ss_pred HcCCcccccceeecccc--------------ceEEeecc-------------cccCC-----------------------
Q 024385 85 RDGSTHQGTVTSMEPNE--------------DTFVLHSE-------------STKKG----------------------- 114 (268)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~-------------~~~~~----------------------- 114 (268)
++..+.. .+..|++ +....... ....+
T Consensus 90 lg~~~~~---v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~ 166 (695)
T 2j69_A 90 IGENLLP---SDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVE 166 (695)
T ss_dssp HTSSCSC---CCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEE
T ss_pred hCCCCCC---CCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEE
Confidence 9876521 1111211 00000000 00000
Q ss_pred ---ce--eeEEEEeCCCCCC---chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 115 ---KI--KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 115 ---~~--~~~~i~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.. ..+.+|||||..+ .......+++.+|++|+|+|++++ .+...... +...+.. .+.|+++|+||
T Consensus 167 ~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~-l~~~l~~-----~~~~iiiVlNK 239 (695)
T 2j69_A 167 YPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRY-LENYIKG-----RGLTVFFLVNA 239 (695)
T ss_dssp ECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHH-HHHHTTT-----SCCCEEEEEEC
T ss_pred ccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHH-HHHHHHh-----hCCCEEEEEEC
Confidence 00 3689999999654 345567889999999999999886 44444433 3333322 46789999999
Q ss_pred CCCCCC
Q 024385 187 TDKVTA 192 (268)
Q Consensus 187 ~Dl~~~ 192 (268)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=151.33 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=98.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceE------------------E-ee---ccc-----cc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTF------------------V-LH---SES-----TK 112 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~------------------~-~~---~~~-----~~ 112 (268)
...++|+++|.+|||||||+|+|++..+.... ..+..|+.... . .. ..+ .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998763111 11111210000 0 00 000 00
Q ss_pred CC-----------------ceeeEEEEeCCCCCC-------------chhhHhhhccCCCEEE-EEEeCCCCCCCHHHHH
Q 024385 113 KG-----------------KIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIV-FVVDALEFLPNCSAAS 161 (268)
Q Consensus 113 ~~-----------------~~~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~ 161 (268)
.| ....+.+|||||+.. +......|++.++++| +|+|+++. .......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHH
Confidence 00 025899999999742 3445667888888776 79999875 2222222
Q ss_pred HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccC-C
Q 024385 162 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC-H 240 (268)
Q Consensus 162 ~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~-~ 240 (268)
.++..+ . ..+.|+++|+||+|+...... ..+.+.. . +..+ .
T Consensus 183 ~~~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~-------------------~-----------~~~~~~ 224 (299)
T 2aka_B 183 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN-------------------K-----------LLPLRR 224 (299)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECGGGSCTTCC--CHHHHTT-------------------C-----------SSCCTT
T ss_pred HHHHHh-C-----CCCCeEEEEEEccccCCCCch--HHHHHhC-------------------C-----------cCcCCC
Confidence 333332 2 157899999999999764331 1111110 0 0000 1
Q ss_pred ceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 241 NKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 241 ~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+..+++++||++|+ +++++++|.+.
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHHH
Confidence 23478999999998 99999988653
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.85 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=91.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+.+|||+|++.++..|..|+++++++|||+|+++. .+++.+...|+..+..+... .++|+++|+||+
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~--~~~piiLv~NK~ 270 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF--TDTSIILFLNKK 270 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG--TTSEEEEEEECH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc--cCCcEEEEEECc
Confidence 6899999999999999999999999999999999983 15688999999998875432 689999999999
Q ss_pred CCCCC-----------------CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeee
Q 024385 188 DKVTA-----------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250 (268)
Q Consensus 188 Dl~~~-----------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa 250 (268)
|+... .+.++..+.+......+ . .......+.+++|||
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l------------~-------------~~~~~~~~~~~etSA 325 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDL------------N-------------KRKDTKEIYTHFTCA 325 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTT------------C-------------SCTTTCCEEEEECCT
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHh------------h-------------cccCCCceEEEEEEC
Confidence 98521 23333333333221111 0 000134678999999
Q ss_pred ccCC-chhHHHHHHhh
Q 024385 251 LTGE-ISQVEQFIREQ 265 (268)
Q Consensus 251 ~~g~-i~~l~~~l~~~ 265 (268)
++|+ |+++++++.+.
T Consensus 326 ~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDV 341 (353)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHH
Confidence 9998 99999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=144.46 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-----------c
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-----------L 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-----------~ 130 (268)
...++|+++|++|+|||||+|+|++..+.....+... ++.........+.+ ..+.+|||||..+ +
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS--ITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc--eeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 4678999999999999999999999876433222111 11111112223344 5789999999653 3
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
...+..+++.+|++|+|+|++.. .. ....++..+..... .....|+++|+||+|+......+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~-~~--~~~~~l~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRY-TE--EEHKATEKILKMFG-ERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCC-SS--HHHHHHHHHHHHHH-HHHGGGEEEEEECGGGC------
T ss_pred HHHHHhcCCCCcEEEEEeeCCCC-CH--HHHHHHHHHHHHhh-hhccceEEEEEeCCccCCcccHH
Confidence 33344566788999999999875 32 22333333332100 01346999999999997655444
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-19 Score=153.71 Aligned_cols=168 Identities=14% Similarity=0.276 Sum_probs=86.2
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCc-ccccce----eeccccceEEeecccccCCceeeEEEEeCCCC-------
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH------- 127 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~------- 127 (268)
.....++|+++|++|+|||||+++|.+... ...... ...++.+.......+...+....+++|||||+
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 345678999999999999999999876543 221111 01122222222333344555568999999999
Q ss_pred CCchhhHh-------hhccC-------------CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 128 SRLRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 128 ~~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+..... .|++. +|+++|+++.+. .++......+...+. .++|+|+|+||+
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~ 184 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKA 184 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECC
Confidence 55555554 55543 346777777643 345555543333332 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC----chhHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFIR 263 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~----i~~l~~~l~ 263 (268)
|+..........+.+...++ ..+++++++||++|. +.++.+.|.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~--------------------------------~~~i~~~~~Sa~~~~~~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--------------------------------CC-CCSCCCC---------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------------------------HCCCCEEeCCCcCCCcchhHHHHHHHHH
Confidence 99754222211112221111 224678999999874 566667776
Q ss_pred hhcC
Q 024385 264 EQVK 267 (268)
Q Consensus 264 ~~~~ 267 (268)
+.+|
T Consensus 233 ~~ip 236 (361)
T 2qag_A 233 ASIP 236 (361)
T ss_dssp HTCS
T ss_pred hcCC
Confidence 6655
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=145.12 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=88.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+++|||+|+++++..|..|+++++++|||+|.+ +. +++.+...|+..+..+... .++|+++++||
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~~~--~~~~iiL~~NK 243 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYPWF--QNSSVILFLNK 243 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSGGG--TTCEEEEEEEC
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhhcc--CCceEEEEEEC
Confidence 68999999999999999999999999999999665 44 6788888999988876432 68999999999
Q ss_pred CCCCCC------------------CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEe
Q 024385 187 TDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEA 248 (268)
Q Consensus 187 ~Dl~~~------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~ 248 (268)
+|+... .+.++..+.+......+ -......+.++++
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~--------------------------~~~~~~~i~~~~T 297 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL--------------------------NPDSDKIIYSHFT 297 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS--------------------------CTTTTSCEEEEEC
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh--------------------------cccccCCcEEEEE
Confidence 998642 23333333333222211 0011345788999
Q ss_pred eeccCC-chhHHHHHHhh
Q 024385 249 SGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 249 Sa~~g~-i~~l~~~l~~~ 265 (268)
||++++ |+.+++.+.+.
T Consensus 298 sA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 298 CATDTENIRFVFAAVKDT 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHHHHH
Confidence 999998 88888776653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=156.71 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=86.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee---------c-----cccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM---------E-----PNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+..+|+++|++|+|||||+++|.+.........++ . ...+.......+... .+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 456799999999999999999998433210000000 0 011100011111122 268999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++......+++.+|++++|+|++++. ......++..+.. .++|+++|+||+|+. ....+..+.+.+
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~--~~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~ 151 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGV--QVGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRS 151 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHH
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCccc--chhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHH
Confidence 999999999999999999999998862 2334444444443 578999999999997 444444444443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=138.55 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=94.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------ch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~ 131 (268)
....+|+++|++|||||||++++.+..+... ..++.+..........++ .+.+|||||+.. ++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~----~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLAR----TSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEEEEEEET---TEEEEECCCCC------CCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcccc----ccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHH
Confidence 5678999999999999999999998763211 111111111111111222 468999999853 22
Q ss_pred hhHhhhc---cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
.....++ +.++++++|+|++.+ .+.. ...+..++.. .+.|+++|+||+|+............+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~--~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~- 167 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHP-LKDL--DQQMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVL- 167 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHH--HHHHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHhhhcccEEEEEEECCCC-Cchh--HHHHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-
Confidence 2333444 578999999999986 3332 1222222322 67899999999998753221111111111111
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+.++++||+++. +++++++|.+.+
T Consensus 168 -----------------------------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 168 -----------------------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp -----------------------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 01224578999999998 999999998764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=153.71 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=81.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccc-c------cceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ-G------TVTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~-~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+.. .+.. . ..... ....+.......+.+.+ +.+++|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 35679999999999999999999842 1100 0 00000 00000000011122233 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
.+|...+..+++.+|++|+|+|++++ ........ +..+.. .++|+++|+||+|+....
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~-~~~~~~------~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQG-VEPQSETV-WRQAEK------YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHH-HHHHHH------TTCCEEEEEECTTSTTCC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCC-cchhhHHH-HHHHHH------cCCCEEEEEECCCcccCC
Confidence 99999999999999999999999997 44444433 333333 588999999999998643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=137.63 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc--
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP-- 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~-- 139 (268)
.+..+|+++|.+|+|||||+|++++..+... +..+.++..........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i 108 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---SPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELI 108 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---CSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHH
Confidence 4678999999999999999999998775211 1111111111122223344 58999999999887655444332
Q ss_pred -------CCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHH
Q 024385 140 -------QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQ 201 (268)
Q Consensus 140 -------~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~ 201 (268)
.+|++++|+|++.. . +... ..++..+..... .....|+++|+||+|+... ...++..+.
T Consensus 109 ~~~l~~~~~~~il~V~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 109 KGFLVNRTIDVLLYVDRLDVY-A-VDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp HHHTTTCEECEEEEEEESSCS-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEcCCCC-C-CCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 78999999998764 3 3333 344444433211 0123599999999999633 444444433
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=145.83 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=62.6
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
..+.+.+|||+|+++++..+..|+++++++|+|+|++ +. +++.+...|+..+...... .++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~-~s~~~~~~~~~~i~~~~~~--~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK-NRMMETKELFDWVLKQPCF--EKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTS-BHHHHHHHHHHHHHTCGGG--SSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccch-hHHHHHHHHHHHHHhcccc--CCCeEEEEE
Confidence 4578999999999999999999999999999999998 54 6799999999988875432 689999999
Q ss_pred ecCCCC
Q 024385 185 NKTDKV 190 (268)
Q Consensus 185 nK~Dl~ 190 (268)
||+|+.
T Consensus 258 NK~DL~ 263 (354)
T 2xtz_A 258 NKFDIF 263 (354)
T ss_dssp ECHHHH
T ss_pred ECcchh
Confidence 999985
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=151.03 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Ccccc-------cce-----------eeccccceEEeecccccCCceeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-------TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i 121 (268)
.+.++|+++|+.|+|||||+++|+.. .+... ... ++......+.+.. ...++..+.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSG-MAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECC-ccccCCceeEEE
Confidence 45789999999999999999999743 11110 000 1111111111110 012234478999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
||||||.+|...+..+++.+|++|+|+|++++ ... .....+..... .++|+++|+||+|+.... ..++.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~-qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~ 157 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQP-QSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQ 157 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcH-HHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHH
Confidence 99999999999999999999999999999987 322 23333333332 588999999999997653 3344444
Q ss_pred HHH
Q 024385 202 MEK 204 (268)
Q Consensus 202 l~~ 204 (268)
+..
T Consensus 158 l~~ 160 (704)
T 2rdo_7 158 IKT 160 (704)
T ss_pred HHH
Confidence 443
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=141.30 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=64.0
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..+... .++|+++++||
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~~~--~~~piiLv~NK 237 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNEFL--KGAVKLIFLNK 237 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCGGG--TTSEEEEEEEC
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhhcc--CCCeEEEEEEC
Confidence 68999999999999999999999999999999998 44 6788999999999876432 68999999999
Q ss_pred CCCCC
Q 024385 187 TDKVT 191 (268)
Q Consensus 187 ~Dl~~ 191 (268)
+|+..
T Consensus 238 ~DL~~ 242 (340)
T 4fid_A 238 MDLFE 242 (340)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99853
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-18 Score=152.05 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cc------c-----ccceee---ccccceE--EeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH------Q-----GTVTSM---EPNEDTF--VLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~------~-----~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+|+|+.++|||||..+|+... .. . ...... +...+.. .-...+.+.+ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 467899999999999999999985211 00 0 001100 0000100 0011123344 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
||||.+|.....+.++-+|++|+|+|+.++. ..+....+..... .++|+++++||+|....+ .....+.+.
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV--~~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~ 177 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGV--EAQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIE 177 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBS--CHHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCc--ccccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhh
Confidence 9999999999999999999999999999983 2334444444444 789999999999997654 444444444
Q ss_pred H
Q 024385 204 K 204 (268)
Q Consensus 204 ~ 204 (268)
.
T Consensus 178 ~ 178 (548)
T 3vqt_A 178 Q 178 (548)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=150.56 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCcccc-------cceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+. +.+... ..... .+..+.......+.+.+ +.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 3567999999999999999999985 222100 00000 00111000011122333 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.++......+++.+|++|+|+|++++ ...... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g-~~~~~~-~~~~~~~~------~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSG-VEPQTE-TVWRQATT------YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTB-SCHHHH-HHHHHHHH------TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCC-CcHHHH-HHHHHHHH------cCCCEEEEEECCCcccc
Confidence 99999999999999999999999987 444433 33333433 58899999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=139.43 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred eeEEEEeCCCCCC-------------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEE
Q 024385 117 KPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183 (268)
Q Consensus 117 ~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv 183 (268)
..+.+|||||+.+ +......+++.+|++++|+|+++. .........+...+.. .+.|+++|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~-~~~~~~~~~i~~~~~~-----~~~~~i~v 204 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT-DLANSDALQLAKEVDP-----EGKRTIGV 204 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS-CSTTCSHHHHHHHHCS-----SCSSEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc-chhhhHHHHHHHHhCC-----CCCcEEEE
Confidence 5799999999864 345566788999999999998442 1111111122222322 57899999
Q ss_pred eecCCCCCCC
Q 024385 184 CNKTDKVTAH 193 (268)
Q Consensus 184 ~nK~Dl~~~~ 193 (268)
+||+|+....
T Consensus 205 ~NK~Dl~~~~ 214 (315)
T 1jwy_B 205 ITKLDLMDKG 214 (315)
T ss_dssp EECTTSSCSS
T ss_pred EcCcccCCcc
Confidence 9999997654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=135.24 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
....+|+++|.+|+|||||+|+|++..+.... ..+.++...........+ ..+.+|||||+.++... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i 111 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---PFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNII 111 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---SSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---CCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHH
Confidence 35689999999999999999999987752111 111111111111122233 68999999999776422 2
Q ss_pred hhh--ccCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHH
Q 024385 135 DEF--LPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDK 208 (268)
Q Consensus 135 ~~~--~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~ 208 (268)
..+ .+.+|+++||+|++.. . +... ..++..+..... .....|+++|+||+|+.... ..++..+.....+..
T Consensus 112 ~~~~~~~~~d~il~v~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~ 187 (270)
T 1h65_A 112 KSFLLDKTIDVLLYVDRLDAY-R-VDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187 (270)
T ss_dssp HHHTTTCEECEEEEEEESSCC-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCEEEEEEeCCCC-c-CCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHH
Confidence 222 2479999999998763 2 3333 355544443211 01227999999999997543 455554444444443
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=151.75 Aligned_cols=145 Identities=17% Similarity=0.254 Sum_probs=98.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-----cc-----------eeeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-----TV-----------TSMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-----~~-----------~~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
.+.++|+++|++|+|||||+++|+...- ... .. .|+........+... ...++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4567999999999999999999986411 000 00 011111111112100 012344
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~ 192 (268)
.+.++|||||||.+|...+..+++.+|++|+|+|++++ .+.+....| ..... .++|+++|+||+|+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~-~~~~~------~~~p~ilviNK~D~~~~e~~ 168 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETVL-RQALG------ERIKPVVVINKVDRALLELQ 168 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHHH-HHHHH------TTCEEEEEEECHHHHHHTSC
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHH-HHHHH------cCCCeEEEEECCCcchhhhc
Confidence 57899999999999999999999999999999999997 455554333 33332 6789999999999864 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.+++...+.+.++.++..-.
T Consensus 169 ~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 169 VSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776655543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-17 Score=138.60 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=70.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.||||||... .....+..+|++++|+|+... .....+.. . -.+.|+++|+||+|+.......
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~-~~~~~l~~-------~----~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTG-DQLQGIKK-------G----VLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTT-CTTTTCCT-------T----SGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCC-ccHHHHHH-------h----HhhcCCEEEEECCCCcChhHHH
Confidence 6899999999643 333445889999999998875 32322111 0 1356999999999996543333
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.+...+.... . . ......+++++||++|+ +++|+++|.+++
T Consensus 237 ~~~~~l~~~l~~~~---~---------------~-------~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 237 LAARELSAAIRLIY---P---------------R-------EALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHS---T---------------T-------CCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc---c---------------c-------ccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 33333333332210 0 0 00113479999999999 999999998765
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=142.03 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecc---------------cccCC-ceeeEEEEeCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSE---------------STKKG-KIKPVHLVDVPG 126 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~DtpG 126 (268)
.+|+++|.+|||||||+|+|++....... .+|..+..+...+... ..+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 47999999999999999999987632111 2344444443222100 01122 136799999999
Q ss_pred CCCc----hhhHh---hhccCCCEEEEEEeCCCC
Q 024385 127 HSRL----RPKLD---EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 127 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 153 (268)
+.+. +.... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22222 457899999999999874
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=133.89 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=61.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.++||||.... .......+|++++|+|++.+ ........ .+ ...|.++|+||+|+.......
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~-~~~~~i~~---~i--------l~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGG-DELQGIKR---GI--------IEMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcc-hhHHHhHH---HH--------HhcCCEEEEeeecCCCchhHH
Confidence 57899999996432 23446789999999999875 22221111 11 345889999999996421111
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+...+.. ... .+ .....+++++||++|+ +++|.++|.+.+
T Consensus 232 ~~~~~l~~~l~~-------~~~-----------------~a-~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 232 RIQAEYVSALKL-------LRK-----------------RS-QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHTT-------CC-----------------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------cCc-----------------cc-cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 111112111110 000 00 0112368899999999 999999998764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-17 Score=136.42 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=76.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC-Ccccccce----eeccccceEEeecccccCCceeeEEEEeCCCC-------CC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG-STHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH-------SR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-------~~ 129 (268)
.-.++|+++|++|+|||||+++|.+. .++...+. ...++.............+....+++|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 43322210 00111111111111222344468999999998 55
Q ss_pred chhhHh-------hhccC-------------CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 130 LRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 130 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+..... .|++. +++++|+.+++.. ++.... +.+..+ ..+.|+++|+||.|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-------HNKVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-------TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-------HhcCCEEEEEEeCC
Confidence 555443 44432 3456777665442 233333 222222 15679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhh
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQ 265 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~ 265 (268)
+..........+.+.+.++ ..+++++++||++|+++++++++.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~--------------------------------~~~~~~~e~Sa~~~~v~e~f~~l~~~ 211 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRL 211 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCCC---------CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--------------------------------HcCCeEEecCCccccccHHHHHHHHH
Confidence 9753222111222222222 12357899999999888777766654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-16 Score=134.74 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKL 134 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~ 134 (268)
...|+++|++|||||||++++.+.... ....++..+..+... .++ ...+.+||+||+.+. ....
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~------~~~-~~~~~l~DtpGli~~a~~~~~L~~~f 229 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE------VSE-EERFTLADIPGIIEGASEGKGLGLEF 229 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE------CSS-SCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEE------ecC-cceEEEEeccccccchhhhhhhhHHH
Confidence 457999999999999999999876431 111222333332222 222 147899999998542 1122
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
...+..++.+++|+|++ . ..+..+..+..++..... .-...|.++|+||+|+... +..+.+.+.++
T Consensus 230 l~~~era~~lL~vvDls-~-~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~------- 295 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAA-D-EPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE----EAVKALADALA------- 295 (416)
T ss_dssp HHHHTSSSEEEEEEETT-S-CHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH----HHHHHHHHHHH-------
T ss_pred HHHHHHHHhhhEEeCCc-c-CCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH----HHHHHHHHHHH-------
Confidence 33456799999999998 3 457777666666554321 0136799999999999753 12222222111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++++ +++|+++|.+.+
T Consensus 296 -------------------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 296 -------------------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp -------------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 112468999999998 999999998765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-17 Score=138.49 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=93.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc-ccc-ceeeccccceEE-------------------ee-------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGT-VTSMEPNEDTFV-------------------LH------------- 107 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~-~~~~~~~~~~~~-------------------~~------------- 107 (268)
...++|+++|.+|||||||+|+|++..+. ... ..+..|+..... ..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998763 111 222222210000 00
Q ss_pred ----cc-------cccC-CceeeEEEEeCCCCCC-------------chhhHhhhccCCCEE-EEEEeCCCCCCCHHHHH
Q 024385 108 ----SE-------STKK-GKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGI-VFVVDALEFLPNCSAAS 161 (268)
Q Consensus 108 ----~~-------~~~~-~~~~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~i-i~v~d~~~~~~~~~~~~ 161 (268)
.. +.+. .....+.+|||||..+ +......|++.++.+ ++|+|++.... -....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-GCHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-hhHHH
Confidence 00 0000 0125799999999643 334566777666654 55666655311 11111
Q ss_pred HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCc
Q 024385 162 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 241 (268)
Q Consensus 162 ~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~ 241 (268)
.++..+ . ..+.|+++|+||+|+...... ..+.++. .. +....+
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~------------------~~-----------~~l~~~ 230 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN------------------KL-----------LPLRRG 230 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHTT------------------CS-----------SCCTTC
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHhC------------------Cc-----------ccccCC
Confidence 222222 2 267899999999999764321 1111100 00 000012
Q ss_pred eeEEEEeeeccCC-chhHHHHHHh
Q 024385 242 KVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 242 ~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..++++||++|+ ++++++++.+
T Consensus 231 ~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 231 YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ceEEEeCCcccccccccHHHHHHH
Confidence 2468899999998 9999888865
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=133.08 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=104.6
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcc---cccceee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVTSM 97 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~---~~~~~~~ 97 (268)
.+.+.|.++++........+.... .+..+ .+...+...++++|++|+|||||++.|.+.-.. .-.+.+.
T Consensus 21 r~~l~~~i~~ie~~~~~~~~~~~~--~~~~l------~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 21 RATLAQAMTLVESRHPRHQALSTQ--LLDAI------MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHH--HHHHH------GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhhhhHhhcCCchhhhHHHH--HHHhC------CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 466777777777666554433211 01100 112356678999999999999999998631100 0011111
Q ss_pred ccccce---------------------EE--eec----------------ccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 98 EPNEDT---------------------FV--LHS----------------ESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 98 ~~~~~~---------------------~~--~~~----------------~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
.+.... +. ... .....+ +.+.++||||..+... ...
T Consensus 93 d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~--~~i~liDTpG~~~~~~---~~~ 167 (341)
T 2p67_A 93 DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAG--YDVVIVETVGVGQSET---EVA 167 (341)
T ss_dssp CCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTT--CSEEEEEEECCTTHHH---HHH
T ss_pred cCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccC--CCEEEEeCCCccchHH---HHH
Confidence 111100 00 000 001223 6899999999875433 346
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+.+|++++|+|++.+ ..+..+.. .. .+.|.++|+||+|+..........+.+.+.+..+
T Consensus 168 ~~aD~vl~Vvd~~~~-~~~~~l~~---~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~--------- 226 (341)
T 2p67_A 168 RMVDCFISLQIAGGG-DDLQGIKK---GL--------MEVADLIVINKDDGDNHTNVAIARHMYESALHIL--------- 226 (341)
T ss_dssp TTCSEEEEEECC-------CCCCH---HH--------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HhCCEEEEEEeCCcc-HHHHHHHH---hh--------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc---------
Confidence 889999999999765 22111100 00 2468899999999965322222212222211110
Q ss_pred ccccCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
... ....+++++||++|+ +++|.++|.+.+
T Consensus 227 ------------------~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 ------------------RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp ------------------CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ------------------cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000 002378999999999 999999998764
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=146.51 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc--CCccc------c-cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ------G-TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~------~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+.++|+|+|+.++|||||..+|+. +.... . +.....+ +.+...-...+.+.+ +.++|+|||||.
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~ 78 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHM 78 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcH
Confidence 357899999999999999999853 11110 0 0000000 111111112233444 789999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 194 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 194 (268)
+|.....+.++-+|++|+|+|+.++... +....+..... .++|.++++||+|....+.
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~--qT~~v~~~a~~------~~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQA--QTRILFHALRK------MGIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCS--HHHHHHHHHHH------HTCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcH--HHHHHHHHHHH------cCCCeEEEEeccccccCCH
Confidence 9999999999999999999999998432 33344444444 5889999999999977654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-16 Score=133.84 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=49.8
Q ss_pred eeEEEEeCCCCCCc-------------hhhHhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEE
Q 024385 117 KPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLI 182 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piiv 182 (268)
..+.+|||||..++ ......|++.+|++|+|+|+.+. ... .....++..+ . ..+.|+++
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~~~~~l~~~~-~-----~~~~~~i~ 208 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISREV-D-----PSGDRTFG 208 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGCHHHHHHHHS-C-----TTCTTEEE
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCHHHHHHHHHh-c-----ccCCCEEE
Confidence 46899999998876 55677899999999999998664 222 2222222221 1 25789999
Q ss_pred EeecCCCCCCC
Q 024385 183 CCNKTDKVTAH 193 (268)
Q Consensus 183 v~nK~Dl~~~~ 193 (268)
|+||+|+....
T Consensus 209 V~nK~Dl~~~~ 219 (360)
T 3t34_A 209 VLTKIDLMDKG 219 (360)
T ss_dssp EEECGGGCCTT
T ss_pred EEeCCccCCCc
Confidence 99999997643
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-16 Score=138.69 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEE-e-ecc--------------------cc---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-L-HSE--------------------ST--------- 111 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~--------------------~~--------- 111 (268)
...+|+++|.+|+|||||+|+|++..+... ..+..+++.... + ... +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~-~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGS-RVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSC-CCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccC-ccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457999999999999999999999876310 111122221110 0 000 00
Q ss_pred -----cCCc-eeeEEEEeCCCCCC-----------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc
Q 024385 112 -----KKGK-IKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174 (268)
Q Consensus 112 -----~~~~-~~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (268)
..+. ...+.+|||||+.+ +......++..+|++|+|+|+++. ........++..+..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~----- 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-EISDEFSEAIGALRG----- 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-CCCHHHHHHHHHTTT-----
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-CCCHHHHHHHHHHHh-----
Confidence 0000 02689999999875 445667788999999999999884 334555555544432
Q ss_pred CCCCcEEEEeecCCCCCC
Q 024385 175 KKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 175 ~~~~piivv~nK~Dl~~~ 192 (268)
.+.|+++|+||+|+...
T Consensus 217 -~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVET 233 (550)
T ss_dssp -CGGGEEEEEECGGGSCH
T ss_pred -cCCCEEEEEECCCccCH
Confidence 46899999999999764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=120.85 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=91.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee--cccc----------c--eEEeecc--ccc----------CCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE----------D--TFVLHSE--STK----------KGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~--~~~~----------~--~~~~~~~--~~~----------~~~ 115 (268)
.+.++++++|.+|||||||+++|............+ .+.. + ....... ... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 467899999999999999999998652111111111 1110 0 0001100 000 111
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--H 193 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~ 193 (268)
.+.+.+|||+|+.... ..+....+.+++|+|+... .. ....+. .. .+.|+++|+||+|+... .
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~-~~--~~~~~~-~~--------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEG-DD--VVEKHP-EI--------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGC-TT--HHHHCH-HH--------HHTCSEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCc-ch--hhhhhh-hh--------hhcCCEEEEecccCCcchhh
Confidence 2578999999962111 1122357889999999886 21 111111 11 35789999999998643 2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 194 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 194 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++.+.+. .+ ...++++++||++|+ +++++++|.+.+
T Consensus 173 ~~~~~~~~~~----~~------------------------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 173 DVEKMKADAK----LI------------------------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp CHHHHHHHHH----HH------------------------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----Hh------------------------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 3333333222 11 123579999999998 999999998765
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=133.26 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccccee----eccccceEEeecccccCCceeeEEEEeCCCCCCch-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------- 131 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------- 131 (268)
-.++|+++|++|||||||++.|.+..+......+ ..++.............+....+++|||+|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4568999999999999999999987652111100 11111111122222223433578999999987542
Q ss_pred hh-------H-----------hhhccCC--CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 132 PK-------L-----------DEFLPQA--AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 132 ~~-------~-----------~~~~~~~--d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.. . ..++..+ ++++|+++++. .++.... .++..+. .++|+|+|+||+|+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L~-------~~v~iIlVinK~Dll 180 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRLH-------EKVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHHT-------TTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHHh-------ccCcEEEEEEcccCc
Confidence 11 1 1223333 45666666542 1244443 4554442 478999999999997
Q ss_pred CCCCHHHHHHHHHHHHH
Q 024385 191 TAHTKEFIRKQMEKEID 207 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~ 207 (268)
.........+.+.+.+.
T Consensus 181 ~~~ev~~~k~~i~~~~~ 197 (418)
T 2qag_C 181 TPEECQQFKKQIMKEIQ 197 (418)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 54333333334444333
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=139.76 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--------cccc-cce-----------eeccccceEEeecccccCCceeeEEEE
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--------THQG-TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHLV 122 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--------~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 122 (268)
+.++|+|+|+.++|||||..+|+... .... ... |+......+.++. .....+.+.++|+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~-~~~~~~~~~iNlI 90 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG-SRGQYDNYRVNVI 90 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC-TTSCSCCEEEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc-CcCCCCCEEEEEE
Confidence 45799999999999999999985221 1100 000 1111111111111 0111224789999
Q ss_pred eCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 123 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|||||.+|.......++-+|++|+|+|+.++. ..+....+..... .++|.++|+||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV--~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV--EPQSETVWRQANK------YGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------HTCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEccccccCcc
Confidence 99999999999999999999999999999983 3344455555554 689999999999997643
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=128.16 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=99.9
Q ss_pred CCCcHHHH--HHHHHcCCccccc---ceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 73 SGSGKTVL--FYQLRDGSTHQGT---VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 73 ~~~GKSsL--i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
+.+.|.-| +.|+....+..+. .....++.+.... .+..++ +.+.+|||+|++.++..|..|++.++++|||
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~--~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv 231 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEY--DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL 231 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEE--EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEE--EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEE
Confidence 67777766 6777766542211 1112233332221 122333 7899999999999999999999999999999
Q ss_pred EeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC------------------CCHHHHHH
Q 024385 148 VDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------------------HTKEFIRK 200 (268)
Q Consensus 148 ~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~~~~~~~ 200 (268)
+|+++. .+++.+...|+..+...... .++|+++|+||+|+... .+.++..+
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~--~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF--SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG--TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhh--CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 999982 15789999999998875432 68999999999998531 22233322
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+......+ ... ...+.+++|||++|+ |+++++++.+.
T Consensus 310 ~~~~~f~~l---------------------------~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 310 FLVECFRGK---------------------------RRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHHHTT---------------------------CSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------------hcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 222111110 000 234689999999998 99999988764
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=123.36 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=70.4
Q ss_pred eeEEEEeCCCCCCchhh------HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK------LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.+|||||+.+.... ...++.. +++++++|+... ................. ...+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-KKPNDYCFVRFFALLID--LRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-CSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-cCHHHHHHHHHHHHHHh--cccCCCeEEEEeccccc
Confidence 57999999998764322 1135566 899999998765 23333222211111100 01478999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhcc-ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAV-SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++.+.+.. ++.+....... ...+... +.+... ........+++++||++|+ +++|+++|.+.+
T Consensus 185 ~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 185 SEEEKERHRKYFED-IDYLTARLKLDPSMQGLMA-YKMCSM-----MTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHH-HHHHHH-----HHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhC-hHHHHHHHhccccccchhH-hHHHHH-----HHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 54322222222210 11100000000 0000000 000000 0000122368999999998 999999998765
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-15 Score=114.84 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHH---HHHHhcCCccCCCCcEEEEeecC-CCCCCCCHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT-DKVTAHTKEFIRK 200 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~ 200 (268)
+|+..+++.|.+|++++|++|||+|+++. +.++ ....+ ..++.+.. ...++|++|++||. |+..+.+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~-~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTT-CCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccH-hHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 48999999999999999999999999987 4443 66666 34444321 01588999999995 7888888887776
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.- ..+...+.+.+|||++|+ +.+.++||.+.++
T Consensus 187 ~L~L--------------------------------~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHL--------------------------------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTG--------------------------------GGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCC--------------------------------cCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 6541 112356889999999999 9999999998764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=126.15 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=95.4
Q ss_pred HHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH
Q 024385 79 VLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC 157 (268)
Q Consensus 79 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 157 (268)
+|+.++..+.|. ..+. |+++.+. ......++ .+.+||| +++++..+..|++++|++|+|+|++++..++
T Consensus 32 sl~~~~~~~~f~~~~~~----pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~ 101 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLK----IYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETST 101 (301)
T ss_dssp CEEEEEECGGGTTTTCC----CCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCH
T ss_pred cEEEEEEcccccccCCC----CCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCH
Confidence 577788887775 4333 3344222 22222222 6899999 9999999999999999999999999973378
Q ss_pred HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeec
Q 024385 158 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFS 237 (268)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~ 237 (268)
..+..|+..+.. .++|+++|+||+|+...... +...+..+.+ .
T Consensus 102 ~~l~~~l~~~~~------~~~piilv~NK~DL~~~~~v----~~~~~~~~~~---------------------------~ 144 (301)
T 1u0l_A 102 YIIDKFLVLAEK------NELETVMVINKMDLYDEDDL----RKVRELEEIY---------------------------S 144 (301)
T ss_dssp HHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHH----HHHHHHHHHH---------------------------T
T ss_pred HHHHHHHHHHHH------CCCCEEEEEeHHHcCCchhH----HHHHHHHHHH---------------------------h
Confidence 888888876644 57899999999999753221 1111111111 1
Q ss_pred cCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 238 QCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 238 ~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. . +++++|||++|. ++++++++..
T Consensus 145 ~--~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 145 G--L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp T--T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred h--h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 1 1 479999999998 9999998764
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=125.80 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=64.5
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE----------FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+.+|||+|++.++..+..|++.++++|||||+++ . +++.....|+..+..... ..++|++||+||
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~-ns~~e~~~~~~~i~~~~~--~~~~piiLvgNK 293 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT-NRLQEALNLFKSIWNNRW--LRTISVILFLNK 293 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCS-BHHHHHHHHHHHHHTCTT--CSSCCEEEEEEC
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccccc-chHHHHHHHHHHHHhccc--CCCCeEEEEEEC
Confidence 789999999999999999999999999999999998 5 789999999999987643 268999999999
Q ss_pred CCCC
Q 024385 187 TDKV 190 (268)
Q Consensus 187 ~Dl~ 190 (268)
+|+.
T Consensus 294 ~DL~ 297 (402)
T 1azs_C 294 QDLL 297 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9984
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=120.10 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeeccc------ccCC---ceeeEEEEeCCCCCCchh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSES------TKKG---KIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~---~~~~~~i~DtpG~~~~~~ 132 (268)
..+|+++|.+|||||||+|+|++..+.... .+|..|+.+...++... .... ....+.+|||||+.++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642221 23556665544432110 0000 014689999999987642
Q ss_pred -------hHhhhccCCCEEEEEEeCCC
Q 024385 133 -------KLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 133 -------~~~~~~~~~d~ii~v~d~~~ 152 (268)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23346799999999999987
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=132.32 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=95.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-cccc-ceeeccccce-------EE---------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT-VTSMEPNEDT-------FV--------------------------- 105 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~-~~~~~~~~~~-------~~--------------------------- 105 (268)
...++|+++|.+++|||||+|+|++..+ +.+. ..|..|..-. +.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999876 2221 1111000000 00
Q ss_pred -----------eecccccCCceeeEEEEeCCCCCCc-------------hhhHhhhc-cCCCEEEEEEeCCCCCCCHHHH
Q 024385 106 -----------LHSESTKKGKIKPVHLVDVPGHSRL-------------RPKLDEFL-PQAAGIVFVVDALEFLPNCSAA 160 (268)
Q Consensus 106 -----------~~~~~~~~~~~~~~~i~DtpG~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~ 160 (268)
....+...+ ...+.++||||.... ......|+ ..+|++++|+|++.... -...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-SCHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-hhHH
Confidence 000000001 135889999997541 12344555 47899999999987522 1222
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCC
Q 024385 161 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCH 240 (268)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~ 240 (268)
...+..+ . ..+.|+++|+||+|+....... . .+.. + .. +....
T Consensus 207 l~ll~~L-~-----~~g~pvIlVlNKiDlv~~~~~~--~-~il~--~---------------~~-----------~~l~l 249 (772)
T 3zvr_A 207 LKIAKEV-D-----PQGQRTIGVITKLDLMDEGTDA--R-DVLE--N---------------KL-----------LPLRR 249 (772)
T ss_dssp HHHHHHH-C-----TTCSSEEEEEECTTSSCTTCCS--H-HHHT--T---------------CS-----------SCCSS
T ss_pred HHHHHHH-H-----hcCCCEEEEEeCcccCCcchhh--H-HHHH--H---------------Hh-----------hhhhc
Confidence 2223222 2 2578999999999998643321 0 0000 0 00 00001
Q ss_pred ceeEEEEeeeccCC-chhHHHHHHh
Q 024385 241 NKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 241 ~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+..+++++||++|+ +++|.+.|.+
T Consensus 250 g~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 250 GYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCceEEecccccccchhHHHHHHH
Confidence 23478889999998 9999998876
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=117.59 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecc--------cccCC-----ceeeEEEEeCCCCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSE--------STKKG-----KIKPVHLVDVPGHSR 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~i~DtpG~~~ 129 (268)
.+|+++|.+|||||||+|+|++..... ...+|+.|+.+...++.. ....+ ....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999998754211 123356666554433210 00111 124799999999876
Q ss_pred ch-------hhHhhhccCCCEEEEEEeCCC
Q 024385 130 LR-------PKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 ~~-------~~~~~~~~~~d~ii~v~d~~~ 152 (268)
.. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456899999999999986
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=112.71 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHH---HHHhcCCccCCCCcEEEEeec-CCCCCCCCHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLY---DILTNSTVVKKKIPVLICCNK-TDKVTAHTKEFIR 199 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~piivv~nK-~Dl~~~~~~~~~~ 199 (268)
.+||..+++.|.+|++++|++|||||+++. +.++ ....+. .++.+.. ...++|++|++|| .|+..+.+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr-eRle-ak~EL~eL~~mL~e~~-~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTT-CCCC-HHHHHHHHHHHHCHHH-HCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcH-hHHH-HHHHHHHHHHHhcchh-hcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 468999999999999999999999999997 4344 444433 4443211 0168999999997 6998888887776
Q ss_pred HHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 200 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.+.- ..+...+.+..|||+||+ +.+.++||.+.++
T Consensus 271 e~L~L--------------------------------~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHL--------------------------------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTG--------------------------------GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCC--------------------------------ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 66541 112356889999999999 9999999998875
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=118.07 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~~ 137 (268)
.+|+++|.||||||||+|+|++.... +..+ |.++..+....+.+.+ .+++++||||..+-. ......
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~-pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE---AAEY-EFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC---GGGT-CSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc---ccCC-CCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 47999999999999999999986542 2222 3334444444455556 689999999975432 223356
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
++.||++++|+|++++ .........++ ......-...|.++++||.|..
T Consensus 147 i~~ad~il~vvD~~~p---~~~~~~i~~EL-~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKP---LHHKQIIEKEL-EGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHCSEEEEEEETTSH---HHHHHHHHHHH-HHTTEEETCCCCCEEEEECSSS
T ss_pred HHhcCccccccccCcc---HHHHHHHHHHH-HHhhHhhccCChhhhhhHhhhh
Confidence 6889999999999986 33332222222 2211112567889999999974
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-13 Score=106.10 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccc--------------eEEeecc--cc------------cC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--------------TFVLHSE--ST------------KK 113 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~--~~------------~~ 113 (268)
.+.++|+++|.+|||||||++++....+......++....+ ....... .. ..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 46789999999999999999999876443323332221111 1111100 00 00
Q ss_pred CceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC-
Q 024385 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA- 192 (268)
Q Consensus 114 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~- 192 (268)
.....+.++|++|..... ..+-...+.++.++|+........... .. .+.|.++|+||+|+...
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~~~----~~--------~~~~~iiv~NK~Dl~~~~ 180 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEKHP----GI--------MKTADLIVINKIDLADAV 180 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTTCH----HH--------HTTCSEEEEECGGGHHHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhhhh----hH--------hhcCCEEEEeccccCchh
Confidence 011357788888842211 112234556778888644311111111 11 24688999999998643
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 193 -HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 193 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++..+.+ +.+ ....+++++||++|+ +++++++|.+.+
T Consensus 181 ~~~~~~~~~~~----~~~------------------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 181 GADIKKMENDA----KRI------------------------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCCHHHHHHHH----HHH------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHh------------------------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1232222222 111 123579999999998 999999998754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=114.58 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=100.4
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHc------CCcccccc
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRD------GSTHQGTV 94 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~------~~~~~~~~ 94 (268)
.+.+.|..+++...+....|.... .+.. -.+...+...++++|++|||||||++.+.+ ++. .+
T Consensus 20 r~~l~r~i~~ie~~~~~~~~~~~~--~l~~------i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v---~i 88 (337)
T 2qm8_A 20 RAALARAITLAESRRADHRAAVRD--LIDA------VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV---AV 88 (337)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH--HHHH------HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE---EE
T ss_pred HHHHHHHHHHHeeCCcccccChHH--HHHh------CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE---EE
Confidence 355566656666555555443210 1111 112235677899999999999999999973 332 11
Q ss_pred eeeccccc---------------------eEEeec------------------ccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 95 TSMEPNED---------------------TFVLHS------------------ESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 95 ~~~~~~~~---------------------~~~~~~------------------~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
.+..+... .+.... .....+ +.+.++||||...-..
T Consensus 89 ~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~--~~~iliDT~Gi~~~~~--- 163 (337)
T 2qm8_A 89 LAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAG--FDVILVETVGVGQSET--- 163 (337)
T ss_dssp EEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTT--CCEEEEEECSSSSCHH---
T ss_pred EEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCC--CCEEEEECCCCCcchh---
Confidence 11111110 000000 011123 6899999999865322
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhh
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~ 214 (268)
.....+|.+++|+|+..+ .....+...+ ...|.++++||+|+..... .....+.+...+ .
T Consensus 164 ~v~~~~d~vl~v~d~~~~-~~~~~i~~~i-----------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~-------~ 224 (337)
T 2qm8_A 164 AVADLTDFFLVLMLPGAG-DELQGIKKGI-----------FELADMIAVNKADDGDGERRASAAASEYRAAL-------H 224 (337)
T ss_dssp HHHTTSSEEEEEECSCC-------CCTTH-----------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHH-------T
T ss_pred hHHhhCCEEEEEEcCCCc-ccHHHHHHHH-----------hccccEEEEEchhccCchhHHHHHHHHHHHHH-------H
Confidence 234689999999998754 2111111111 1346678889999753211 111111111100 0
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.... ... ....+++.+||++|+ +++|.++|.+..
T Consensus 225 l~~~-----------------~~~-~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 225 ILTP-----------------PSA-TWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TBCC-----------------SBT-TBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hccc-----------------ccc-CCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 000 001357889999999 999999988753
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=107.96 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--------------
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------------- 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------------- 131 (268)
+++++|++|+|||||+|.|.+..+.........+..............+....++++|++|.....
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 499999999999999999988754221221112221111111111112222368999999875421
Q ss_pred hhHhhhc-------------cC--CCE-EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 132 PKLDEFL-------------PQ--AAG-IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 132 ~~~~~~~-------------~~--~d~-ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
..+..++ .. +|+ ++|++|+..+ +......+...+. .++|+|+|.||+|.....
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~---l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS---LKSLDLVTMKKLD------SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC------CHHHHHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC---CCHHHHHHHHHHh------hCCCEEEEEcchhccchH
Confidence 1111111 11 233 5566666654 3333333333332 578999999999987543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=105.62 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=53.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecc-cc-----cC---CceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE-ST-----KK---GKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-----~~---~~~~~~~i~DtpG~~~~ 130 (268)
....+|+++|.+|||||||+|+|++..+... ..+|..|+.+...++.. +. .. .....+.+|||||+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999998765221 22345555554443221 00 00 00135899999998875
Q ss_pred hh-------hHhhhccCCCEEEEEEeCCCC
Q 024385 131 RP-------KLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 131 ~~-------~~~~~~~~~d~ii~v~d~~~~ 153 (268)
.+ .+..+++.+|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 44 466788999999999999864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=99.48 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=77.6
Q ss_pred eeeEEEEe-CCC-----CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 116 IKPVHLVD-VPG-----HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 116 ~~~~~i~D-tpG-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+.++| +.| ++++....+.+++++|++++|+|++++..++..+..|+..+.. .++|+++|+||+|+
T Consensus 49 ~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 49 YVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKIDL 122 (302)
T ss_dssp EEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCGGG
T ss_pred EEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcccC
Confidence 35556665 323 7777888888999999999999999874478888888876543 68999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+....+.. +......+ ..+++++++||++|+ +++|++++..
T Consensus 123 ~~~~~v~~~-~~~~~~~~--------------------------------~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 123 LNEEEKKEL-ERWISIYR--------------------------------DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CCHHHHHHH-HHHHHHHH--------------------------------HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCccccHHH-HHHHHHHH--------------------------------HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 753211101 11111111 112479999999998 9999988754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=89.04 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCCCchh------h
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------K 133 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~ 133 (268)
++++++|++|+|||||+|.|.+...+..... ..................+....++++|++|...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999986433211100 0001110011111111122223689999998543110 1
Q ss_pred Hh------------h----------hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 134 LD------------E----------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 134 ~~------------~----------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.. . .+..+++.++++|.... .+......+...+. ...++++|.||+|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~--gL~~lD~~~l~~L~------~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH--SLRPLDLEFMKHLS------KVVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS--SCCHHHHHHHHHHH------TTSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC--cCCHHHHHHHHHHH------hcCcEEEEEeccccCC
Confidence 11 1 11236889999997642 23333333333333 2389999999999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 024385 192 AHTKEFIRKQMEKEID 207 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~ 207 (268)
........+.+.+.+.
T Consensus 155 ~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 155 LEEKSEFKQRVRKELE 170 (270)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5444444444444444
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.3e-09 Score=92.18 Aligned_cols=114 Identities=23% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH------cCCcccccceeecc----------------ccceEEeecc------------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR------DGSTHQGTVTSMEP----------------NEDTFVLHSE------------ 109 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~------~~~~~~~~~~~~~~----------------~~~~~~~~~~------------ 109 (268)
...|+++|.+||||||++++|. +.+. ...+.++ ....+.....
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kV---llVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT---CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE---EEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 4579999999999999999997 3322 1111100 0000110000
Q ss_pred -cccCCceeeEEEEeCCCCCCchh-hH---hhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-E
Q 024385 110 -STKKGKIKPVHLVDVPGHSRLRP-KL---DEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-L 181 (268)
Q Consensus 110 -~~~~~~~~~~~i~DtpG~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-i 181 (268)
....+ +.+.|+||||...... .. ... ...+|.+++|+|+..+ ...... ...+. ...|+ .
T Consensus 178 ~~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~~~~~---a~~~~-------~~~~i~g 244 (504)
T 2j37_W 178 KFKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG-QACEAQ---AKAFK-------DKVDVAS 244 (504)
T ss_dssp HHHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC-TTHHHH---HHHHH-------HHHCCCC
T ss_pred HHHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc-ccHHHH---HHHHH-------hhcCceE
Confidence 00123 6899999999764322 11 111 2278999999999987 322222 22221 12575 8
Q ss_pred EEeecCCCCCCC
Q 024385 182 ICCNKTDKVTAH 193 (268)
Q Consensus 182 vv~nK~Dl~~~~ 193 (268)
+|+||+|.....
T Consensus 245 vVlNK~D~~~~~ 256 (504)
T 2j37_W 245 VIVTKLDGHAKG 256 (504)
T ss_dssp EEEECTTSCCCC
T ss_pred EEEeCCccccch
Confidence 999999987543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-11 Score=102.57 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------- 133 (268)
...+++++|.+|+|||||+|+|++.... .....+..|.++..... ..... .+.++||||.......
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLES---GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECST---TCEEEECCSCCCCSSGGGGSCTT
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCC---CeEEEeCCCcCcHHHHHHHHhHH
Confidence 4578999999999999999999875100 00122233333332222 11222 4799999997643211
Q ss_pred -Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 134 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 134 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
...++ ...+.++|++|+... -.+..+.. + +.+. ..+.|+++++||+|.......+...+.+++.+
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~-l-~~l~-----~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQT-LFFGGLAR-L-DYIK-----GGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEE-EEETTTEE-E-EEEE-----SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred HHHHHhcccccCceEEEEcCCce-EEECCEEE-E-EEcc-----CCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 12222 668999999998432 00111100 1 1111 25789999999999987665555555555443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-10 Score=99.01 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
...+++++|.+|+|||||+|+|++..... ....+..|.++..... ....+ .+.++||||..+....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPLDE---ESSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EESSS---SCEEEECCCBCCTTSGGGGSCH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEecC---CeEEEeCCCcCcHHHHHHHhhH
Confidence 45789999999999999999998753111 0112222333222221 11222 3789999997543211
Q ss_pred --Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 134 --LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 134 --~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
...+ ....+.++|++|+... -....+.. + +.+. ..+.|+++++||+|.......+...+.+++.+
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~-~-d~l~-----~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQT-LFFSGLAR-F-DYVS-----GGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEE-EEETTTEE-E-EEEE-----SSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred HHHHHhccccccCceEEEEcCCCE-EEEcceEE-E-EEec-----CCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 1122 2567889999998432 00111100 1 1111 25789999999999987776666666655543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=87.25 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-cceeecccc--ceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh-
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNE--DTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF- 137 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~- 137 (268)
.....++++|++|||||||+|.+.+-..+.. .+..-.... ..+.+.. ...-.++++|+||..........+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-----~~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-----PNIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-----SSCTTEEEEECCCGGGSSCCHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-----cccCCeeehHhhcccchHHHHHHHH
Confidence 3566899999999999999999987432111 111101111 0111111 111257999999964322222222
Q ss_pred ----ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC---------CCCCHHHHHHHHHH
Q 024385 138 ----LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---------TAHTKEFIRKQMEK 204 (268)
Q Consensus 138 ----~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~l~~ 204 (268)
+...+..++ +|...+ ...+..+...+.. .+.|+++|.||.|+. +.....++.+.+.+
T Consensus 142 ~~~~L~~~~~~~~-lS~G~~----~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 142 EKMKFYEYDFFII-ISATRF----KKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp HHTTGGGCSEEEE-EESSCC----CHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHcCCCccCCeEE-eCCCCc----cHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 233455555 777643 1222333333332 578999999999974 12233444433333
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeee--ccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG--LTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa--~~g~-i~~l~~~l~~~~~ 267 (268)
...+...... .....++.+|+ +++. +++|.+.|.+.+|
T Consensus 212 l~~~~l~~~g-------------------------~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 212 NCVNTFRENG-------------------------IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHTT-------------------------CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhcC-------------------------CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 2110000000 00125778899 6664 9999999988876
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=92.01 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=61.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-cccc--ceeeccccceEEeecc-c-----ccCCc---eeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT--VTSMEPNEDTFVLHSE-S-----TKKGK---IKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~-~-----~~~~~---~~~~~i~DtpG~~~ 129 (268)
....+++++|++|||||||+|.|++... .... .++..|+.+...++.. + ..... ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999998654 2212 2355666665554320 0 00010 02579999999543
Q ss_pred -------chhhHhhhccCCCEEEEEEeCCC
Q 024385 130 -------LRPKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 -------~~~~~~~~~~~~d~ii~v~d~~~ 152 (268)
+...+..+++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456677889999999999975
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-09 Score=86.19 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=63.1
Q ss_pred EEeCCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 121 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 121 i~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
|-+.|||. .....+...+..+|+++.|+|+.++..+. ..+.+++ .++|.++|+||+|+.+. +..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------~~kp~ilVlNK~DL~~~---~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------KNKPRIMLLNKADKADA---AVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------SSSCEEEEEECGGGSCH---HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------CCCCEEEEEECcccCCH---HHH
Confidence 55689987 44566778899999999999999974332 2333332 57899999999999752 111
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+ +.++ ..+++++.+||++|. +++|.+++.+.+
T Consensus 69 ~~~~-~~~~--------------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 69 QQWK-EHFE--------------------------------NQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHH-HHHH--------------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHH-HHHH--------------------------------hcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 1111 1111 112368899999998 999888776653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=86.45 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
..++|+..+..+.+.++++++|+|++++ . ..|...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~---~---~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF---N---GSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH---H---HHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC---c---ccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 4567888899999999999999999885 1 22322222221 478999999999997643 23334333332
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.. + ....+++.+||++|. +++|+++|.++.
T Consensus 125 ~~~~~------------------g-----------~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQL------------------G-----------LKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHT------------------T-----------CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHc------------------C-----------CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 22210 0 011268899999999 999999997653
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-08 Score=85.34 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=67.6
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
.+++|+..+..+.+.++++++|+|++++.. .|...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 478899999999999999999999999721 1222222111 478999999999998653 23334333332
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+... + .....++.+||++|. +++|.+.|.++.
T Consensus 127 ~~~~~------------------g-----------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEEL------------------G-----------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTT------------------T-----------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHc------------------C-----------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 22210 0 011268899999999 999999997653
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-07 Score=79.63 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=40.8
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC-c-EEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-P-VLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-p-iivv~nK~D 188 (268)
+.+.|+||||......... ..+..+|.+++|+|+..+ . ........+ . ... | ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~-~------~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q---QAGIQAKAF-K------EAVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G---GHHHHHHHH-H------TTSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H---HHHHHHHHH-h------hcccCCeEEEEeCCC
Confidence 6889999999765422211 122368999999999876 2 122222222 1 345 5 789999999
Q ss_pred CCC
Q 024385 189 KVT 191 (268)
Q Consensus 189 l~~ 191 (268)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 864
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=77.13 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=36.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
....+++++|.+|+|||||+|+|.+.... .++..|.++.... .+... ..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~---~~~~~~g~T~~~~--~~~~~---~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA---KTGDRPGITTSQQ--WVKVG---KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------C--CEEET---TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee---ecCCCCCeeeeeE--EEEeC---CCEEEEECcCcCC
Confidence 35678999999999999999999987631 1111222221111 11112 2689999999764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-06 Score=74.27 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||......... .....+|.+++|+|+..+ ....... ..+.. .-.+..+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q~a~~~a---~~f~~------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-QQAYNQA---LAFKE------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGHHHHH---HHHHH------SCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-hhHHHHH---HHHHh------hCCCeEEEEECCCCc
Confidence 6789999999654322211 122357999999999886 3222222 22222 223456899999986
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=75.68 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=35.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.+++++|.+|+|||||+|+|.+..... .+..+.++... ..+..+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~---~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS---VGAQPGITKGI--QWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------CCS--CEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc---cCCCCCCccce--EEEEeC---CCEEEEECCCcccC
Confidence 699999999999999999999876521 11111111110 011111 26799999997754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-07 Score=75.30 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||.. ........+..+|+++.|+|+.++..+.... +. + . ++|.++|+||+|+.+. +...+ .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~---l~-l------l--~k~~iivlNK~DL~~~---~~~~~-~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG---VD-F------S--RKETIILLNKVDIADE---KTTKK-W 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT---SC-C------T--TSEEEEEEECGGGSCH---HHHHH-H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH---HH-h------c--CCCcEEEEECccCCCH---HHHHH-H
Confidence 588764 3456778899999999999999873322111 11 1 1 7899999999999753 11111 1
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+.++. .++++ .+||++|. +++|.+++.+.
T Consensus 68 ~~~~~~--------------------------------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 68 VEFFKK--------------------------------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHH--------------------------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHH--------------------------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 111110 11245 78999998 99998887653
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=77.95 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH 90 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~ 90 (268)
-+.++++|++|||||||++.+.+-..+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 356999999999999999999886433
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=77.93 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc-eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV-TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.+..+|+|+|.+|+|||||+|+|++....-... ++...+.+.+....... ......+.++||||..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcc
Confidence 455789999999999999999999876311111 11122222222211111 111247899999997653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.10 E-value=8e-06 Score=71.29 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=38.8
Q ss_pred eeEEEEeCCCCCC--chhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSR--LRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~--~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+.+.|+||||... .... .... ....+.+++|+|+..+ .........+.+. -.+..+++||+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g-q~a~~~a~~f~~~---------~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG-QKAYDLASRFHQA---------SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGGHHHHHHHHHH---------CSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc-hHHHHHHHHHhcc---------cCCcEEEEeccc
Confidence 6788999999644 2111 1111 1246899999999886 3333333333221 234678889999
Q ss_pred CC
Q 024385 189 KV 190 (268)
Q Consensus 189 l~ 190 (268)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 75
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=66.25 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=40.7
Q ss_pred eeEEEEeCCCCCC--chhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecC
Q 024385 117 KPVHLVDVPGHSR--LRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~--~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~ 187 (268)
+.+.++||||... ...... .....+|.+++|+|+... . ........+. ...| ..+|+||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~~-------~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG-Q---KAYDLASKFN-------QASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G---GHHHHHHHHH-------HTCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch-H---HHHHHHHHHH-------hhCCCCEEEEeCC
Confidence 6789999999876 322211 234468999999999765 2 2222222222 2355 67899999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-06 Score=69.89 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=39.4
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.+..+.++|.+++|+|+.++..+...+..++..... .++|.++|+||+|+.+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECCccCch
Confidence 445678899999999999774555555555533322 68899999999999864
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=68.49 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
+.+.|+||||......... ..+..++.+++|+|+..+ ...-.. ...+. ...+ .-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-~~~~~~---~~~f~-------~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-QDAANT---AKAFN-------EALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC-TTHHHH---HHHHH-------HHSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh-HHHHHH---HHHHh-------ccCCCeEEEEecCCC
Confidence 6789999999765432221 224468999999999876 332222 22221 2234 3478999998
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=61.86 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999854
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6e-05 Score=65.98 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=41.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC------------------CcccccceeeccccceEEeecc---cccCCceeeEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG------------------STHQGTVTSMEPNEDTFVLHSE---STKKGKIKPVH 120 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 120 (268)
.+...|.|+|++++|||||+|+|++. .|.... ++-..+.+.+..... ...+|....+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEE
Confidence 34566899999999999999999853 221111 111122333332211 11244457899
Q ss_pred EEeCCCCCCch
Q 024385 121 LVDVPGHSRLR 131 (268)
Q Consensus 121 i~DtpG~~~~~ 131 (268)
++||||..+..
T Consensus 144 llDTeG~~~~~ 154 (447)
T 3q5d_A 144 LMDTQGTFDSQ 154 (447)
T ss_dssp EEEEECCCSSH
T ss_pred EEcCCcccccc
Confidence 99999987654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=62.21 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=33.7
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
...++|.+++|.. ..+..+...+..++..... .++|.+||+||+||.+.
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~------~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET------LQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH------HTCEEEEEEECGGGCCH
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh------cCCCEEEEEECccCCCc
Confidence 3578899997755 4554455555555544332 57888999999999854
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=64.27 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345799999999999999998753
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.50 E-value=2.1e-05 Score=69.75 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=56.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--CchhhH-----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--RLRPKL----- 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--~~~~~~----- 134 (268)
.....|+++|.+||||||+.++|...-... ...+....... +. ....+......+||..|.+ +.+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~--~r--~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQ--YR--RDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH--HH--HHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecch--hh--hhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999987542100 11111100000 00 0011111234678998873 223333
Q ss_pred ---hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHH
Q 024385 135 ---DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDI 167 (268)
Q Consensus 135 ---~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~ 167 (268)
..++..+++.++|+|+++. .......|+..+
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~--~~~~R~~~~~~~ 145 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNT--TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCC--SHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC--CHHHHHHHHHHH
Confidence 5667677888999999996 345555554433
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00034 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999999985
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=59.14 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
...++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468999999999999998874
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=54.50 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCCCchhhHh-------hhc-----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEE
Q 024385 117 KPVHLVDVPGHSRLRPKLD-------EFL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLIC 183 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv 183 (268)
+.+.|+||||......... ..+ ..+|.+++|+|+... ...+ .....+. ...+ .-+|
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---~~~l-~~~~~~~-------~~~~i~GvV 260 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---QNGV-IQAEEFS-------KVADVSGII 260 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---HHHH-HHHHHHT-------TTSCCCEEE
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---HHHH-HHHHHHh-------hcCCCcEEE
Confidence 6889999999765321111 111 247899999999864 2222 2222221 2233 3488
Q ss_pred eecCCCCCC
Q 024385 184 CNKTDKVTA 192 (268)
Q Consensus 184 ~nK~Dl~~~ 192 (268)
+||.|....
T Consensus 261 ltk~d~~~~ 269 (320)
T 1zu4_A 261 LTKMDSTSK 269 (320)
T ss_dssp EECGGGCSC
T ss_pred EeCCCCCCc
Confidence 999997543
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00092 Score=51.86 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=48.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.|+|+|+.. .......+..+|.+++++..+.. + ......+..+..... ...+.++.+|+|++|...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--~-~~~~~~~~~l~~~~~-~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--D-FSAAGSVVTVLEAQA-YSRKVEARFLITRKIEMA 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--T-HHHHHHHHHHHTTSC-GGGCCEEEEEECSBCTTE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--H-HHHHHHHHHHHHHHH-hCCCCcEEEEEeccCCCc
Confidence 688999999876 44556667779999999998875 4 555555554443221 125678899999999643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00053 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....++++|++|||||||+|.+. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45678999999999999999998 53
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=61.12 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....++++|++|||||||+|.|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 46789999999999999999998754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00042 Score=60.34 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=37.7
Q ss_pred eeEEEEeCCCCCCchh-hHh-----hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
+.+.|+||||...... ... ...-.+|.+++|+|+... . ........+.. ..+ .-+|+||.|.
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q---~av~~a~~f~~-------~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q---EALSVARAFDE-------KVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T---HHHHHHHHHHH-------HTCCCEEEEESGGG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H---HHHHHHHHHHh-------cCCceEEEEeCcCC
Confidence 6789999999764322 111 112358899999999765 2 22222222221 122 4578899997
Q ss_pred CC
Q 024385 190 VT 191 (268)
Q Consensus 190 ~~ 191 (268)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00045 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|||||||+|.|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 456899999999999999999997643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4557999999999999999999763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=55.16 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...++++|++|||||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999875
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=54.13 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+...++++|++|||||||+++|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 345678999999999999999999854
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00039 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00091 Score=55.62 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|||||||+|.+.+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 456799999999999999999987543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|+.|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0033 Score=49.18 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=46.9
Q ss_pred eeEEEEeCCCC-CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGH-SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.++|+|+. .. ......+..+|.+|+++..+.. ++......+..+... .+.++.+|+|+.|...
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~--~~~~~~~~~~~l~~~-----~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDAL--ALDALMLTIETLQKL-----GNNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHH--HHHHHHHHHHHHHHT-----CSSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCch--hHHHHHHHHHHHHhc-----cCCCEEEEEEecCCcc
Confidence 67899999987 43 3445667789999999988763 455555555544432 2567889999999754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00075 Score=52.40 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999998764
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00078 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-++++|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45667999999999999999998764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0007 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|||||||++.+.+-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999998764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00077 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...++++|++|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4557999999999999999999875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00088 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999998764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0007 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00098 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+..-++++|++|||||||++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35567999999999999999999865
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.025 Score=46.05 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=44.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~ 190 (268)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN--NKDEVKKGKELIEA------TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC--CHHHHHHHHHHHHT------TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC--cHHHHHHHHHHHHh------CCCCEEEEEEeCCcCC
Confidence 678999999865432 223344568999999998874 46666665554443 456666 899999964
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.12 Score=42.35 Aligned_cols=67 Identities=10% Similarity=-0.052 Sum_probs=45.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.|+|||+..... ......+.+|.+|+|+..... +...+...+..+... ....+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~--~~~~~~~~~~~l~~~-----g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN--TLKEVETSLSRFEQN-----GIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS--BHHHHHHHHHHHHHT-----TCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC--cHHHHHHHHHHHHhC-----CCCEEEEEEcCccccc
Confidence 678999999875432 233455679999999998874 466666665555442 2233558999999653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00071 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+.--++++|++|||||||++.+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 455689999999999999998654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=51.15 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+++||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=51.13 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+...++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999987653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...|+++|++||||||+.++|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5567999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=52.23 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345679999999999999999887643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0064 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334599999999999999998865
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=51.33 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998866
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.588 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....++++|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0017 Score=51.49 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=48.53 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456679999999999999999988743
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0018 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-++.-.++|+|++|+|||||++.|.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 36778899999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0021 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|++|||||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999988753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=48.39 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l 84 (268)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0022 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|+|||||++++...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998763
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998863
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=49.65 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998865
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|+.|||||||++.+.+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35667999999999999999998764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.06 Score=44.46 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=42.6
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~ 190 (268)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLN--TAKEVSLSMQRLEQ------AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTS--CTTHHHHHHHHHHH------TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCC--hHHHHHHHHHHHHh------CCCCeEEEEEeCCccC
Confidence 578999999875432 222344678999999988764 35555555554443 234433 888999964
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355678999999999999999988743
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999988753
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.007 Score=52.84 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=40.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc------------------CCcccccceeecc-ccceEEeeccc---ccCCceeeE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD------------------GSTHQGTVTSMEP-NEDTFVLHSES---TKKGKIKPV 119 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 119 (268)
.+..-|.|+|+.++|||+|+|.++. ..|... .+..+ +.|.+.....+ ..+|..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCeeEE
Confidence 3455678999999999999996541 223211 12222 33444332211 225666789
Q ss_pred EEEeCCCCCCc
Q 024385 120 HLVDVPGHSRL 130 (268)
Q Consensus 120 ~i~DtpG~~~~ 130 (268)
.++||.|..+.
T Consensus 143 lllDTEG~~d~ 153 (457)
T 4ido_A 143 LLMDTQGTFDS 153 (457)
T ss_dssp EEEEECCBTCT
T ss_pred EEEeccCCCCc
Confidence 99999997654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=51.63 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999987753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998865
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0015 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999988653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4566799999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35667999999999999999998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=51.46 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=51.71 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35568999999999999999998874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 35567899999999999999998864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0022 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=17.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH-cC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR-DG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~-~~ 87 (268)
.....++++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456679999999999999999998 54
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355678999999999999999988753
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999885
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.003 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35567999999999999999999884
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0028 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999987753
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.003 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999988753
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0028 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0033 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...+++.|+||+|||+++..+..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999888764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....++|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4566799999999999999998765
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=48.45 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0029 Score=51.90 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355679999999999999999988753
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0032 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0031 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0015 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++|+|++|||||||++.+.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0029 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0022 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-.++++|+.|||||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998764
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0032 Score=47.97 Aligned_cols=24 Identities=46% Similarity=0.519 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999853
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0036 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444899999999999999999865
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=48.33 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0036 Score=47.28 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+.++|++|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0033 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999988753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35567899999999999999998764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0024 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45678999999999999999988764
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0035 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0039 Score=47.31 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0082 Score=45.35 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999988653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999976
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0041 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0046 Score=47.77 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0042 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+.-.++++|+.|||||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45679999999999999999987653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0045 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998853
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.004 Score=48.71 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0045 Score=52.76 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.....++++|++|||||||++.+.+--
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 466789999999999999999998743
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0043 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.-.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.005 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45578999999999999999998754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0045 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0051 Score=47.81 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0037 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++|+|++|||||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999998754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0045 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.007 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+-++++|++|||||||++.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0052 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+++|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0054 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0054 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...-.++++|++|||||||++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556799999999999999999875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0048 Score=47.86 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0058 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345678999999999999999987643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0042 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0055 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=47.50 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3556799999999999999998864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|++.|++||||||+..+|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.004 Score=47.20 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0061 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45678999999999999999988753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.006 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45578999999999999999988643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0048 Score=50.86 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.006 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.....|+|+|++||||||+.+.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999987
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0051 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998865
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0059 Score=51.80 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999987653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0063 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45578999999999999999998753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0056 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0052 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999988753
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0057 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|++||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0069 Score=51.77 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345678999999999999999987643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0098 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+++..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0058 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++..|+++|.+||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0052 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-++++|++|+|||||++.+.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999998763
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0059 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998753
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0053 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.007 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45578999999999999999988753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0072 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0069 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998765
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0069 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.059 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+....++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566899999999999999998875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0059 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45578999999999999999987653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0078 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34567999999999999999998763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.01 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556999999999999999998764
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0074 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0073 Score=45.72 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0063 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|++|+|||||++.+.+.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 334999999999999999998763
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0034 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0081 Score=44.82 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0075 Score=45.83 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0058 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998764
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.009 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0094 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++|+|++|||||||++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999876
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0089 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0085 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0089 Score=52.61 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.3
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-.....++++|+.|||||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 357788999999999999999998653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.009 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...++++|++|+|||||++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.021 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998865
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0077 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.009 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0098 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-|+++|+|||||+|...+|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999988864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0057 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999988643
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0094 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.053 Score=45.21 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
......+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 467788999999999999999998653
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0096 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0057 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.013 Score=45.78 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|.+||||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.009 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44689999999999999998754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999754
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0097 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l 84 (268)
++..||+++|.+||||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56889999999999999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999998753
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.03 Score=44.23 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=27.3
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+.-++++|-..... ..+.+.+..+.. .++|++++|-..|-...
T Consensus 89 ~~dvViIDEaQ~l~--~~~ve~l~~L~~------~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFD--DRICEVANILAE------NGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSC--THHHHHHHHHHH------TTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCc--HHHHHHHHHHHh------CCCeEEEEeccccccCC
Confidence 34577778776411 234344444433 57999999999997654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.011 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|++||||||++++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0094 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|+|||||++.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34999999999999999998763
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.012 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.013 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 355699999999999999999875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999998854
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.013 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999976
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999863
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.032 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999986643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.--++++|++|+|||||+..+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566799999999999999998764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=46.22 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45668999999999999999998873
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.031 Score=42.54 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.016 Score=47.20 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999998653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.014 Score=43.59 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-.|++.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999998865
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4557999999999999999998764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.015 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998765
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.017 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....|++.|++|+|||++...+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 46678999999999999999988764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.015 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++.-.++++|++|||||||++.+.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999998764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.016 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-+++++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999998753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.017 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999998753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.019 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998743
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.02 Score=45.99 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=42.32 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.02 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...-+++.|+||+|||+|+..+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999998865
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.02 Score=47.32 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=37.8
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||....... ....+. ..+.+++|+|++.. ...+..+...+. . .+ ..-++.||.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~---~~~~~~~~~~~~-~-----l~-~~giVltk~D~~ 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK---YEDMKHIVKRFS-S-----VP-VNQYIFTKIDET 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC---HHHHHHHTTTTS-S-----SC-CCEEEEECTTTC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---HHHHHHHHHHHh-c-----CC-CCEEEEeCCCcc
Confidence 57899999997754321 122333 36778999998764 333333322111 0 12 234667999976
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 ~ 253 (296)
T 2px0_A 253 T 253 (296)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.045 Score=46.64 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++..-++|.|++|+|||+|...+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3556789999999999999988753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999988764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.016 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.02 Score=44.24 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999997654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.02 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=23.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-+++++|++|||||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567789999999999999999988753
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.026 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+|++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45667999999999999999998753
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.045 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+++.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.022 Score=46.50 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|+|||||+..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566899999999999999998764
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.026 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4568999999999999999988764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.019 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++.|++|+|||+|+..+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.025 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.025 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45679999999999999999998643
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.021 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999988653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.017 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-.++++|++|||||||++.+.+-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.05 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.022 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
-++|+|+.|+|||||++.++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999975
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.026 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.2 Score=39.55 Aligned_cols=72 Identities=15% Similarity=-0.021 Sum_probs=50.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+.+.|+|+|+... ......+..+|.+|+++..+.. ++......+..+.... .....+-+|+|+.|.......
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--~~~~~~~~~~~l~~~~---~~~~~~~~v~N~~~~~~~~~~ 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQ--SLRRAGQLLKLCKEFE---KPISRIEIILNRADTNSRITS 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHH--HHHHHHHHHHHHHTCS---SCCSCEEEEEESTTSCTTSCH
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHH--HHHHHHHHHHHHHHhC---CCccceEEEEecCCCCCCCCH
Confidence 6789999998653 3455667889999999988763 4666666665554432 134568899999997654443
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.034 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-+++.||||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.034 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999998763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.031 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+..-++++|++|+|||||+.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556789999999999999877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.024 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+.-.++++|+.|||||||++.+.+-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44568999999999999999988743
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.03 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||++++.+..
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.06 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+|++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.028 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.018 Score=41.99 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....|++.|++|+|||++...+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35567999999999999999877653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.026 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999998865
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.036 Score=47.69 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-+++.||||+|||+|++.+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45677999999999999999998763
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.015 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.029 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|+|++|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 345889999999999999999754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998866
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.029 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|+|||||++.+.+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 355679999999999999999987643
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.034 Score=49.05 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
......++++|++|+|||+++..+..
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999988754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.032 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.03 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.024 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998875
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.034 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...|+|+|++|||||+|...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.031 Score=46.67 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.034 Score=50.00 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.02 E-value=0.019 Score=46.35 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|++.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988653
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.99 E-value=0.035 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|+..+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999999865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.053 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++++|++|+||||+...|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 445799999999999999987643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.032 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.038 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-+++.|++|+||||+...|....
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 45579999999999999999987654
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.035 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999998653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.039 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|+|||||++.+.+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.032 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.035 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999987653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.033 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++...+.++|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998764
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.038 Score=45.79 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345889999999999999998653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.034 Score=47.17 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.038 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567799999999999999998754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.026 Score=50.81 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|||||||.+.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 35678999999999999999998753
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.28 Score=38.34 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.1
Q ss_pred EEEEeCCCCCCCHH-HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
++.+|=... |. ++...+..+.. .++|+++.+=..|=..
T Consensus 104 vV~IDEaQF---f~~~~v~~l~~la~------~gi~Vi~~GLd~DF~~ 142 (219)
T 3e2i_A 104 VIGIDEVQF---FDDEIVSIVEKLSA------DGHRVIVAGLDMDFRG 142 (219)
T ss_dssp EEEECCGGG---SCTHHHHHHHHHHH------TTCEEEEEEESBCTTS
T ss_pred EEEEechhc---CCHHHHHHHHHHHH------CCCEEEEeeccccccc
Confidence 555665554 33 45666666653 6899999999999654
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.022 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345599999999999999999865
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.06 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 45678999999999999999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.044 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
+.-.++++|+.|||||||++.+.++..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455789999999999999999986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 268 | ||||
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-29 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 6e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-07 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-07 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 9e-07 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-06 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 6e-06 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 8e-06 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 9e-06 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-06 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-05 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 4e-05 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 7e-05 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 8e-05 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 1e-04 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 3e-04 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 3e-04 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 5e-04 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 5e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-04 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 0.001 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 0.001 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 0.002 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 0.003 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 0.004 |
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (269), Expect = 2e-29
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 15/206 (7%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ GL SGKT+LF +L G ++ T TS+ + + +++ + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLP----GH 57
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
S LD F A +VFVVD+ F +E+LY +L +S +K +LI CNK
Sbjct: 58 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 117
Query: 187 TDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKV 243
D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F FSQ KV
Sbjct: 118 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKV 177
Query: 244 SVAEASGLTGE-------ISQVEQFI 262
E S G I +E+++
Sbjct: 178 EFLECSAKGGRGDTGSADIQDLEKWL 203
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.6 bits (239), Expect = 6e-25
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 24/215 (11%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
+I++AG SGKT L L + + TV S EP V LVD P
Sbjct: 5 SIIIAGPQNSGKTSLLTLLT-TDSVRPTVVSQEPLS---------AADYDGSGVTLVDFP 54
Query: 126 GHSRLRPKLDEFLPQAAGIV----FVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPV 180
GH +LR KL ++L A V F+VD+ + +E+L DIL+ + + I +
Sbjct: 55 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 114
Query: 181 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR---------SAVSEADVTNDFTLGIPG 231
LI CNK++ TA I+ +E EI K+ R E N +
Sbjct: 115 LIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174
Query: 232 QAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266
F F+ V E S +ISQ ++I E++
Sbjct: 175 DGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L G SG GK+ L + + + +T++ + F + + K+K + + D G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVK-LQIWDTAG 60
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDA 150
R R + A GI+ V D
Sbjct: 61 QERFRTITTAYYRGAMGIILVYDI 84
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 46.9 bits (110), Expect = 3e-07
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 17/156 (10%)
Query: 55 LLQVFRRKKSTT-----IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
LL + R+ KS I+L GL +GKT L QL T T +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK-------- 53
Query: 110 STKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 169
+ + + +++ D+ G ++RP + +++V+D+ +
Sbjct: 54 -SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTEL 109
Query: 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205
+PVLI NK D +TA I + +
Sbjct: 110 LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++L G SG GKT + ++ + + + ++++ + + + GK + + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD----GKRIKLQIWDTAG 64
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDA 150
R R + A GI+ V D
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDI 88
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 9e-07
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G SG GK+ L + + + +++ T + + GK + D G
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD----GKTIKAQIWDTAG 62
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R R + A G + V D + +L ++ ++ I +++ NK
Sbjct: 63 QERYRRITSAYYRGAVGALLVYD-IAKHLTYENVERWLKELRDHA---DSNIVIMLVGNK 118
Query: 187 TD 188
+D
Sbjct: 119 SD 120
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ G S GKT ++ D S V+++ + ++ K + + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND----KRIKLQIWDTAG 63
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDA 150
R R + A G + + D
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDI 87
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ G +G+GK+ L +Q + + ++ + +++ K + + D G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG----KYVKLQIWDTAG 63
Query: 127 HSRLRPKLDEFLPQAAGIVFVVD 149
R R + AAG + V D
Sbjct: 64 QERFRSVTRSYYRGAAGALLVYD 86
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (101), Expect = 8e-06
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++L G SG GK+ L + D + ++++ F + + +K + + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTI---GVDFKIKTVELDGKTVK-LQIWDTAG 64
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R R + + GI+ V D + + + + + + L+ NK
Sbjct: 65 QERFRTITSSYYRGSHGIIIVYD----VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 9e-06
Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 7/160 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
IVL G +G GKT L + G G ++ F++ + K+K + + D G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEINGEKVK-LQIWDTAG 63
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R R + A ++ D S V I VL+
Sbjct: 64 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV---ITVLVGNKI 120
Query: 187 TDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226
+ ++ + D SA +V F
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 160
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 42.6 bits (99), Expect = 9e-06
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 12/151 (7%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG 114
+L K I++ GL +GKT + Y+L+ G + V + T
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS---------VTTIPTVGFNVETVTY 53
Query: 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174
K ++ DV G ++RP + G++FVVD + A E I
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-- 111
Query: 175 KKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205
+ +LI NK D A I++++
Sbjct: 112 -RDAIILIFANKQDLPDAMKPHEIQEKLGLT 141
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ G SG GK+ L + D + ++ + + + K + + D G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK----AKLAIWDTAG 65
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDA 150
R R + A G++ V D
Sbjct: 66 QERFRTLTPSYYRGAQGVILVYDV 89
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-05
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ G G GK+ L +Q + ++ T ++ G+ + + D G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS----GQKIKLQIWDTAG 62
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R R + AAG + V + S + + + +++ NK
Sbjct: 63 QERFRAVTRSYYRGAAGALMVY----DITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 118
Query: 187 TD 188
D
Sbjct: 119 AD 120
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 7e-05
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 8/147 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFV---LHSESTKKGKIKPVH 120
++ G SG GKT Y+ D TV + + S+ K +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 121 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 180
L D G R R F A G + + D + + + V
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC--ENPDIV 125
Query: 181 LICCNKTDKVTAHTKEFIRKQMEKEID 207
LI E +++ +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYG 152
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 40.0 bits (92), Expect = 8e-05
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK 113
+ +++ K I++ GL G+GKT + Y+L+ G T T
Sbjct: 7 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPT----IGFNVE-----TLS 57
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 173
K +++ D+ G + +RP + A ++FVVD+ + + AS+ L+ +L +
Sbjct: 58 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEEL 116
Query: 174 VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205
+ +L+ NK D+ A + + K++
Sbjct: 117 --QDAALLVFANKQDQPGALSASEVSKELNLV 146
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 1e-04
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++L G SG GKT L + +DG+ GT S F K+K + + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV--GIDFRNKVLDVDGVKVK-LQMWDTAG 65
Query: 127 HSRLRPKLDEFLPQAAGIVFVVD 149
R R + A ++ + D
Sbjct: 66 QERFRSVTHAYYRDAHALLLLYD 88
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
+ + ++L G SGK+ + Q+R V + E F + H+
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKF--------QVDKVNFHM 51
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA---------ASEYLYDILTNST 172
DV G R K + I+FVV + + A I N
Sbjct: 52 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 111
Query: 173 VVKKKIPVLICCNKTDKVTA 192
+ + I V++ NK D +
Sbjct: 112 L--RTISVILFLNKQDLLAE 129
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 12/144 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK+ +V GL +GKT L + L+D Q T +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH---------PTSEELTIAGMTFTT 61
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E + + +P+L
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI---ANVPIL 118
Query: 182 ICCNKTDKVTAHTKEFIRKQMEKE 205
I NK D+ A ++E +R+
Sbjct: 119 ILGNKIDRPEAISEERLREMFGLY 142
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G T E T + K + DV G
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---------TVEYKNISFTVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD+ + A E + + + + +L+ NK
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANK 110
Query: 187 TDKVTAHTKEFIRKQMEKE 205
D A I ++
Sbjct: 111 QDLPNAMNAAEITDKLGLH 129
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (85), Expect = 5e-04
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ GL +GKT L + L++ T + D+ G
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPT---------WHPTSEELAIGNIKFTTFDLGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
H + R ++ P+ GIVF+VDA + A E K +P +I NK
Sbjct: 54 HIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL---KDVPFVILGNK 110
Query: 187 TDKVTAHTKEFIRKQMEKE 205
D A ++ +R +
Sbjct: 111 IDAPNAVSEAELRSALGLL 129
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 15/151 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+ + G +GSGK+ LR + E T H V D+PG
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP--NVVFWDLPG 116
Query: 127 HSRLRPKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
D +L F++ + DI + K
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKN--------DIDIAKAISMMKKEFYFV 168
Query: 184 CNKTDKVTAHTKEFIRKQMEKE--IDKLRAS 212
K D + + + +KE + +R +
Sbjct: 169 RTKVDSDITNEADGEPQTFDKEKVLQDIRLN 199
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 37.0 bits (84), Expect = 9e-04
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+++ GL +GKT + + + T + + +++ DV G
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH---------RGFKLNIWDVGG 55
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
LR + G+++VVD+ + +LI NK
Sbjct: 56 QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANK 112
Query: 187 TDKVTAHTKEFIRKQME 203
D A + I++ +E
Sbjct: 113 QDLPGALSCNAIQEALE 129
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G GKT L + + + L + GK + + D G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFND----KHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 127 HSRLRPKLDEFLPQAAGIVFVVD 149
R + + G + V D
Sbjct: 62 QERFHALGPIYYRDSNGAILVYD 84
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ G +G GK+ L Q D ++ +++ + K + + D G
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG----KQIKLQIWDTAG 61
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R + AAG + V D + + + +L D +S+ + +++ NK
Sbjct: 62 QESFRSITRSYYRGAAGALLVYD-ITRRETFNHLTSWLEDARQHSS---SNMVIMLIGNK 117
Query: 187 TD 188
+D
Sbjct: 118 SD 119
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.002
Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 19/164 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ G S GKT L Y+ G T ++ + ++ KI+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA-VDIDGERIKIQLWDTAGQER 63
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
+ + A V+ + + + A E L IP ++ NK
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-----NDIPRILVGNK 118
Query: 187 TDKVTAHTKEFIRKQMEKEIDKLRASR-------SAVSEADVTN 223
+ K + SA + D +
Sbjct: 119 ------CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 156
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.6 bits (81), Expect = 0.003
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L G SGK+ Q+R T E + K P +VDV G
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKGI-----------HEYDFEIKNVPFKMVDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVV 148
R + E I+F+V
Sbjct: 54 QRSERKRWFECFDSVTSILFLV 75
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (82), Expect = 0.004
Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 25/217 (11%)
Query: 48 LTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH 107
LT +L+ + K AG + T Q R + ++ D V
Sbjct: 33 LTDSLVQRAGIISAAK------AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKE 86
Query: 108 SESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDI 167
+ G ++L+D PGH ++ L G + VVD +E + +
Sbjct: 87 IKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL- 145
Query: 168 LTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 227
++I ++ NK D+ + ++ + + + + N
Sbjct: 146 -------GERIKPVVVINKVDRALLELQV-SKEDLYQTFART---------VESVNVIVS 188
Query: 228 GIPGQAFSFSQCH-NKVSVAEASGLTGEISQVEQFIR 263
+ Q + + +VA SGL G + QF
Sbjct: 189 TYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFAT 225
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.96 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.96 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.95 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.95 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.95 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.95 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.94 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.94 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.94 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.93 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.89 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.87 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.86 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.86 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.85 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.85 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.84 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.8 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.79 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.78 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.78 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.77 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.71 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.71 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.64 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.49 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.48 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.41 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.2 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.03 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.99 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.99 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.56 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.52 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.39 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.37 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.32 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.31 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.21 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.16 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.0 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.93 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.91 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.9 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.42 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.4 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.3 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.24 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.24 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.2 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.08 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.04 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.91 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.89 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.84 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.83 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.72 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.68 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.65 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.59 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.59 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.58 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.57 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.57 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.55 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.55 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.53 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.52 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.5 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.47 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.46 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.45 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.45 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.43 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.42 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.4 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.38 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.37 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.35 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.33 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.32 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.29 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.28 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.27 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.24 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.21 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.2 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.16 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.16 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.16 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.14 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.07 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.06 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.04 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.03 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.01 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 95.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.9 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.9 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.81 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.79 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.77 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.73 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.71 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.66 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.62 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.58 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.57 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.53 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.44 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.4 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.39 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.38 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.28 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.12 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.06 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.98 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 94.92 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.74 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.67 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.64 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.59 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.59 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.54 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.43 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.34 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.33 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.29 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.27 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 94.22 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.14 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.98 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.76 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 93.73 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.62 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.5 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.44 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.44 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.38 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.27 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 93.17 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.16 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.15 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.12 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.11 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 93.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.07 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 92.91 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.91 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.8 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.75 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.72 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.61 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.53 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 92.47 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.34 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.22 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.14 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.12 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.52 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.11 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 91.03 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.72 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.63 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 90.62 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.32 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.97 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.92 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.53 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.28 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.05 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.73 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.3 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.1 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.43 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 86.96 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 85.12 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.2 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.84 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 81.63 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.27 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.02 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.38 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 80.21 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.96 E-value=7.8e-30 Score=194.60 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=127.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.||+++|++|||||||++++..+.+...+.+|.... ... +..++ +.+.+||+||++.+...+..++..+++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~----~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ 73 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN----MRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSA 73 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE----EEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceee----eee--eeeee--EEEEEeeccccccccccccccccccch
Confidence 4689999999999999999999998865554443322 111 12223 789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++.....++..++.+... .++|+++|+||+|+.......++.+.+...
T Consensus 74 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~------------------ 132 (164)
T d1zd9a1 74 IVYMVDAADQ-EKIEASKNELHNLLDKPQL--QGIPVLVLGNKRDLPGALDEKELIEKMNLS------------------ 132 (164)
T ss_dssp EEEEEETTCG-GGHHHHHHHHHHHHTCGGG--TTCCEEEEEECTTSTTCCCHHHHHHHTTGG------------------
T ss_pred hhcccccccc-cccchhhhhhhhhhhhhcc--cCCcEEEEEeccccchhhhHHHHHHHHHHH------------------
Confidence 9999999997 7899999999988876542 789999999999998776665544332210
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....++++++||++|+ ++++++||.+++|
T Consensus 133 ------------~~-~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~k 164 (164)
T d1zd9a1 133 ------------AI-QDREICCYSISCKEKDNIDITLQWLIQHSK 164 (164)
T ss_dssp ------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ------------HH-HhCCCEEEEEeCcCCcCHHHHHHHHHHccC
Confidence 00 0335789999999999 9999999999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-29 Score=192.74 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=127.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|.+|||||||+++++++++...+.++ .+..........++..+.+.+||++|++++...+..+++.+|++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 76 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT----IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAA 76 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC----CSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccc----eeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceE
Confidence 58999999999999999999998875544433 33333444455567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+...... ++..+ +.+
T Consensus 77 ilv~d~~~~-~s~~~i~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~~~~~~~~~-~~~------------------ 133 (164)
T d1yzqa1 77 VVVYDITNV-NSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLADKRQVSIEEGER-KAK------------------ 133 (164)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCGGGCCSCHHHHHH-HHH------------------
T ss_pred EEeeccccc-cchhhhHhhHHHHHHhcC---CCceEEEEecccchhhhhhhhHHHHHH-HHH------------------
Confidence 999999998 889999999998876543 68999999999999754332 22221 111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |++++++|.+.+|
T Consensus 134 -----------------~~~~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 134 -----------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred -----------------HcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence 234589999999999 9999999999876
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-30 Score=198.91 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=123.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||+++++.+.+...+.+|+ +..........++..+.+.+|||+|+..+...+..+++.+|+
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti----~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 78 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL----GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 78 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEET----TEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccce----eccccccccccccccccccccccccccccceecchhcccccc
Confidence 3689999999999999999999998765544443 333334445567777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|||+++. ++++.+..|+..+.... .++|+++|+||+|+......++...
T Consensus 79 ~ilv~d~~~~-~Sf~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~----------------------- 130 (170)
T d1i2ma_ 79 AIIMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV----------------------- 130 (170)
T ss_dssp EEEEEETTSG-GGGTTHHHHHHHHHHHH----CSCCEEEEEECCCCSCSCCTTTSHH-----------------------
T ss_pred hhhccccccc-cccchhHHHHHHHhhcc----CCCceeeecchhhhhhhhhhhHHHH-----------------------
Confidence 9999999998 88999999998887653 6899999999999976554322111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ..+++|++|||++|. |++++++|.+.+
T Consensus 131 ------------~~~-~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 131 ------------FHR-KKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp ------------HHS-SCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ------------HHH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 011 345689999999999 999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-29 Score=194.53 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.+..+... . ++. ...+...+.+++..+.+.+|||||+++++..+..+++.+|++
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~----~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ 75 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-A----EAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 75 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-C----Cee-eeeecceeeccccccceeeeecccccccceecccchhhhhhh
Confidence 6899999999999999999998765321 1 111 122334456678889999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|||+++. .++..+..|+..+..... ...+|+++|+||+|+..... ..+.. .+.+
T Consensus 76 ilv~d~t~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~v~~~~~~-~~~~------------------ 133 (168)
T d2gjsa1 76 VIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGR-ACAV------------------ 133 (168)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCGGGCCSCHHHHH-HHHH------------------
T ss_pred ceecccccc-ccccccccccchhhcccc--cccceEEEeecccchhhhcchhHHHHH-HHHH------------------
Confidence 999999998 889999999988876532 26789999999999976543 22221 1111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. +++++++|.+.+
T Consensus 134 -----------------~~~~~~~e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 134 -----------------VFDCKFIETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp -----------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------hcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 224589999999998 999999987654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.96 E-value=5.5e-29 Score=191.48 Aligned_cols=164 Identities=23% Similarity=0.353 Sum_probs=127.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..||+++|++|||||||++++..+.+.. .. ++.+..... ..... +.+.+||+||+..++..+..+++.
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~----~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~ 79 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TI----PTVGFNVET--VTYKN--VKFNVWDVGGQDKIRPLWRHYYTG 79 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EE----EETTEEEEE--EEETT--EEEEEEEESCCGGGHHHHGGGTTT
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-cc----ceeeeeEEE--eeccc--eeeEEecCCCcchhhhHHHhhhcc
Confidence 4678999999999999999999999887532 11 222222111 11222 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++++|+|+++. +++..+..|+...+.... ..+.|+++|+||+|+.......++.+.+.. +
T Consensus 80 ~~~ii~v~D~s~~-~~~~~~~~~l~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~--~------------- 141 (173)
T d1e0sa_ 80 TQGLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLGL--T------------- 141 (173)
T ss_dssp CCEEEEEEETTCG-GGHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G-------------
T ss_pred cceEEEEEecccc-hhHHHHHHHHHHHhhhcc--cccceeeeeeecccccccccHHHHHHHHHH--H-------------
Confidence 9999999999997 789999999988887543 278999999999999877666655443320 0
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ...++.+++|||++|+ |+++++||.+.+|
T Consensus 142 ---------------~~-~~~~~~~~e~SA~tg~gv~e~~~~l~~~~k 173 (173)
T d1e0sa_ 142 ---------------RI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173 (173)
T ss_dssp ---------------GC-CSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred ---------------HH-HhCCCEEEEeeCCCCcCHHHHHHHHHHhcC
Confidence 00 0335789999999999 9999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.6e-29 Score=192.25 Aligned_cols=162 Identities=14% Similarity=0.197 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+||+++|++|||||||++++..+.|...+.++. + ..+...+..++..+.+.+||++|++.+...+..|++.+|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~----~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 76 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI----E-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS----E-EEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc----c-cccceeEEeeeeEEEeccccccCcccccccccccccccc
Confidence 56799999999999999999999999865444332 2 223334556777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .+++.+..|+..+.+... ..++|+++|+||+|+...... ++..+...+
T Consensus 77 ~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~--~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~---------------- 137 (167)
T d1c1ya_ 77 GFALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---------------- 137 (167)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------------
T ss_pred eeEEeeeccch-hhhHhHHHHHHHHHHhcC--CCCCeEEEEEEecCcccccccchhHHHHHHHH----------------
Confidence 99999999998 899999999998876432 268999999999999765432 222211111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. +++++++|.+.+.
T Consensus 138 -------------------~~~~~~~e~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 138 -------------------WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp -------------------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred -------------------hCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence 345689999999999 9999999988654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.1e-29 Score=193.63 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=123.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
++||+++|++|||||||++++..+.+...+.++. + .........++..+.+.+||++|++.+...+..|++.+|+
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~----~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 76 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 76 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----E-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCce----e-eeccccccccccceeeeccccCccchhcccchhhcccchh
Confidence 3689999999999999999999998865444432 2 2222334456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||++++ ++++....|+.....+.. ++.|+++|+||+|+.......+...... ...++.++.
T Consensus 77 ~ilv~d~~~~-~Sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~---------~~~v~~~e~-- 141 (177)
T d1kmqa_ 77 ILMCFSIDSP-DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMK---------QEPVKPEEG-- 141 (177)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTCHHHHHHHHHTT---------CCCCCHHHH--
T ss_pred hhhhcccchh-HHHHHHHHHHHHHHHHhC---CCCceEEeeecccccchhhHHHHHHHhh---------cccccHHHH--
Confidence 9999999997 889988888877776543 6899999999999975432211100000 000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..|....+.++|+||||++|. |+++++.+.+.
T Consensus 142 ----------~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 142 ----------RDMANRIGAFGYMECSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp ----------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 001221334689999999999 99999988765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.96 E-value=7.6e-29 Score=191.11 Aligned_cols=162 Identities=22% Similarity=0.361 Sum_probs=125.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..||+++|++|||||||++++.++.+... .++.+.... .+...+ +.+.+||++|++.++..+..+++.+
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-----~~~~~~~~~--~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 84 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIK--SVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT 84 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEE--EEEETT--EEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-----eeeeeeeEE--EeccCC--eeEeEeeccccccchhHHHHHhhcc
Confidence 4678999999999999999999999887321 122221111 122233 7899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|||+++. .++.....++..+..+.. ..++|+++|+||+|+........+.+.+...
T Consensus 85 ~~ii~v~d~~d~-~s~~~~~~~~~~~~~~~~--~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (176)
T d1fzqa_ 85 DILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNLH---------------- 145 (176)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTGG----------------
T ss_pred ceeEEeeccccc-cchhhhhhhhhhhhhhhc--cCCCeEEEEEEeccccccccHHHHHHHHHHH----------------
Confidence 999999999997 789999999888876543 2689999999999998877665544333210
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ....+++++|||++|+ ++++++||.+.+
T Consensus 146 --------------~~-~~~~~~~~~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 146 --------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred --------------HH-HhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 00 1345789999999999 999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.96 E-value=3.6e-29 Score=194.12 Aligned_cols=165 Identities=24% Similarity=0.358 Sum_probs=122.7
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
...+..||+++|++|||||||++++.++.+.. ..|+.+..... ....+ +.+.+||+||++.++..+..+++
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-----~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~ 83 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-----TKPTIGFNVET--LSYKN--LKLNVWDLGGQTSIRPYWRCYYA 83 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-----ECSSTTCCEEE--EEETT--EEEEEEEEC----CCTTGGGTTT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-----cccccceEEEE--EeeCC--EEEEEEecccccccchhHHhhhc
Confidence 35778999999999999999999998876532 22222222111 11223 78999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|++++|+|+++. .++.....|+...+.... ..+.|++||+||+|+....+.+++.+.+..
T Consensus 84 ~~~~ii~v~d~~d~-~s~~~~~~~l~~~~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~~~~--------------- 145 (182)
T d1moza_ 84 DTAAVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL--------------- 145 (182)
T ss_dssp TEEEEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT---------------
T ss_pred cceeEEEEeeeccc-ccchhHHHHHHHHHHhhc--cCCcceEEEEEeeccccccCHHHHHHHHHH---------------
Confidence 99999999999998 789999999988776543 268999999999999877666554443220
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. + ....+++|++|||++|+ ++++++||.+.++
T Consensus 146 --------~-------~-~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~ 178 (182)
T d1moza_ 146 --------V-------E-LKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178 (182)
T ss_dssp --------T-------T-CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred --------H-------H-HhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 0 01345789999999999 9999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.8e-29 Score=193.19 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=126.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+||+++|++|||||||+++++.+.+.....+ +.. ......+..++..+.+.+|||+|++++...+..+++.+
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~----t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 78 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP----TIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 78 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCT----TCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccc----ccc-cceeeEeccCCeeeeeeccccccccccccccchhhccc
Confidence 4567999999999999999999999887554332 222 22334456678888999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|||+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 79 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~---------------- 139 (173)
T d2fn4a1 79 HGFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASAFGA---------------- 139 (173)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred eeeeeecccccc-cccchhhhhhHHHHHHhc--cCCCceEEEEEeechhhccccchhhhhHHHH----------------
Confidence 999999999997 889999999888876432 26889999999999975432 222221111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 140 --------------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 140 --------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp --------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------hcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 234689999999999 999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.4e-29 Score=190.39 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=124.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||+++|.++.+...+.++.... .........+..+.+.+|||+|+.++......+++.+|++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 78 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD----FLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS----EEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc----cceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceE
Confidence 589999999999999999999988765554444332 2233344567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. .+++.+..|+..+.... .++|+++|+||+|+...+. .++..+ +.+
T Consensus 79 i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~iilVgnK~Dl~~~~~v~~~~~~~-~~~------------------ 134 (164)
T d1z2aa1 79 VLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEG-LAK------------------ 134 (164)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHH-HHH------------------
T ss_pred EEEEeccch-hhhhhcccccccccccC----CCceEEEeeccCCcccceeeeehhhHH-HHH------------------
Confidence 999999998 88999999998887653 6899999999999976542 232222 211
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 135 -----------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 135 -----------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp -----------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence 223589999999999 999999998753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.96 E-value=3.2e-29 Score=191.90 Aligned_cols=160 Identities=17% Similarity=0.268 Sum_probs=123.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+-+||+++|++|||||||+++++.+.|...+.++. +. .+...+..++..+.+.+||++|++++......+++.+|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~----~~-~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~ 77 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK----AD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC----CE-EEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcc----cc-ccccccccccccccccccccccccchhhhhhhcccccc
Confidence 34699999999999999999999988865444332 22 22334556788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .+++.+..|+.++.+... ..++|+++|+||+|+..... .++..+...
T Consensus 78 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~----------------- 137 (168)
T d1u8za_ 78 GFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----------------- 137 (168)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred eeEEEeeccch-hhhhhHHHHHHHHHHhhC--CCCCcEEEEeccccccccccccHHHHHHHHH-----------------
Confidence 99999999997 889999999988876432 26899999999999976432 233322211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 138 -------------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 138 -------------------QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp -------------------HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 224589999999999 999999998765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=7.7e-29 Score=189.58 Aligned_cols=161 Identities=15% Similarity=0.220 Sum_probs=127.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+||+++|.+|||||||+++|..+.|...+.++. +..........++....+.+||++|++++...+..+++.+|
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 78 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI----GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSA 78 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccc----ccccccccccccccccceeeeecCCchhhhHHHHHHHhhcc
Confidence 56799999999999999999999998865444433 22333333444565678899999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. +++..+..|+..+..... .+.|+++|+||+|+..... .++..+ +.+
T Consensus 79 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~v~~~~~~~-~~~---------------- 137 (167)
T d1z0ja1 79 AAIIVYDITKE-ETFSTLKNWVRELRQHGP---PSIVVAIAGNKCDLTDVREVMERDAKD-YAD---------------- 137 (167)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTSEEEEEEECTTCGGGCCSCHHHHHH-HHH----------------
T ss_pred ceEEEeeechh-hhhhhHHHhhhhhhhccC---CcceEEEecccchhccccchhHHHHHH-HHH----------------
Confidence 99999999997 889999999887766543 7899999999999975433 222221 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |++++.+|.+.+|
T Consensus 138 -------------------~~~~~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 138 -------------------SIHAIFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred -------------------HcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence 234689999999999 9999999999987
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-29 Score=191.75 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=123.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++..+.+.....++. +.......+...+..+.+.+|||||++++...+..+++.+++
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~ 80 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI----GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 80 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccc----cceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence 3689999999999999999999988755443332 222333345556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|.++. .++.....|+..+.+... ...|+++|+||+|+..... .++..+ +.+
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~~~ilvgnK~D~~~~~~v~~~~~~~-~~~----------------- 138 (171)
T d2ew1a1 81 LILTYDITCE-ESFRCLPEWLREIEQYAS---NKVITVLVGNKIDLAERREVSQQRAEE-FSE----------------- 138 (171)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCSSCHHHHHH-HHH-----------------
T ss_pred EEEeeecccc-hhhhhhhhhhhhhccccc---ccccEEEEEeecccccccchhhhHHHH-HHH-----------------
Confidence 9999999997 789999999888876532 6789999999999876443 222221 111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++++++|||++|+ |++++.+|.+.
T Consensus 139 ------------------~~~~~~~~~SAktg~gV~e~f~~l~~~ 165 (171)
T d2ew1a1 139 ------------------AQDMYYLETSAKESDNVEKLFLDLACR 165 (171)
T ss_dssp ------------------HHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------------hCCCEEEEEccCCCCCHHHHHHHHHHH
Confidence 223579999999999 99998887764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.2e-29 Score=192.28 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=123.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....||+++|.+|||||||+++++.+.|...+.++.... ........+..+.+.+|||+|++.+...+..+++.+
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-----~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a 81 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-----YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 81 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-----EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-----eeEEEeeCCceEEeecccccccchhhhhhhhccccc
Confidence 345799999999999999999999998866555444322 223345567778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|||+++. ++++....|+....+... .+.|+++|+||+|+.............. ...++.++.
T Consensus 82 ~~~ilv~d~t~~-~Sf~~~~~~~~~~~~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~---------~r~v~~~~~ 148 (185)
T d2atxa1 82 DVFLICFSVVNP-ASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMK---------EKPICVEQG 148 (185)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTT---------CCCCCHHHH
T ss_pred ceeeeccccchH-HHHHHHHHHHHHHHHhcC---CCCCeeEeeeccccccchhhhhhhhhcc---------cccccHHHH
Confidence 999999999998 788888777777766432 7899999999999975322211100000 000000000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++...+.+.|+||||++|. |+++++.+.+.
T Consensus 149 ------------~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 149 ------------QKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp ------------HHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------HHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence 001111234689999999999 99998877654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=7.7e-29 Score=189.98 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++.++.+.....++ .+.......+...+..+.+.+|||||++++...+..+++.+|+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~ 80 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVST----VGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC----CSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccc----cccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 368999999999999999999998875543333 2222333334455666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. +++.....|+..+..... ...|+++|+||+|+..... .++.. .+.+
T Consensus 81 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~v~~~~~~-~~~~----------------- 138 (169)
T d3raba_ 81 FILMYDITNE-ESFNAVQDWSTQIKTYSW---DNAQVLLVGNKCDMEDERVVSSERGR-QLAD----------------- 138 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHCC---SCCEEEEEEECTTCGGGCCSCHHHHH-HHHH-----------------
T ss_pred EEEEEECccc-hhhhhhhhhhhhhhcccC---CcceEEEEEeecccccccccchhhhH-HHHH-----------------
Confidence 9999999997 778888888877655432 6889999999999876543 23322 2221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ |++++++|.+.+
T Consensus 139 ------------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 139 ------------------HLGFEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.96 E-value=1.5e-28 Score=187.46 Aligned_cols=160 Identities=19% Similarity=0.331 Sum_probs=123.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..||+++|++|||||||+++|.++.+. +..|+.+..... +...+ +.+.+|||||++.++..+..+++.++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~ 71 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKT--LEHRG--FKLNIWDVGGQKSLRSYWRNYFESTD 71 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEE--EEETT--EEEEEEEECCSHHHHTTGGGGCTTCS
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeee--ccccc--cceeeeecCcchhhhhHHHhhhhhhh
Confidence 4579999999999999999999887653 223333322211 22233 78999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++.....++...+.+.. ..+.|+++|+||+|+......++..+.+..
T Consensus 72 ~~i~v~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------------ 130 (165)
T d1ksha_ 72 GLIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL------------------ 130 (165)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG------------------
T ss_pred cceeeeecccc-hhHHHHHHhhhhhhhhcc--cCCCceEEEEeccccccccCHHHHHHHHHh------------------
Confidence 99999999997 788888888888776543 278999999999999877776654433221
Q ss_pred CcccCCCCCCCeeecc-CCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ...++++++|||++|+ ++++++||.+.+
T Consensus 131 --------------~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 131 --------------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp --------------GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------hhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 0335789999999999 999999998765
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.4e-29 Score=189.68 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++..+.|.....++. +..........++..+.+.+||++|+.++...+..+++++|+
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 78 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL----GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 78 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC----SCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCccccccc----ccchheeeeccCCccceeeeeccCCcceecccchhhccCCce
Confidence 3689999999999999999999998865444433 333334445567777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. ++++.+..|+..+..... ...|+++|+||+|+...+. .++..+...
T Consensus 79 ~i~v~d~~~~-~Sf~~~~~~~~~~~~~~~---~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~------------------ 136 (167)
T d1z08a1 79 AILVYDITDE-DSFQKVKNWVKELRKMLG---NEICLCIVGNKIDLEKERHVSIQEAESYAE------------------ 136 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHG---GGSEEEEEEECGGGGGGCCSCHHHHHHHHH------------------
T ss_pred eEEEEeCCch-hHHHhhhhhhhhcccccc---cccceeeeccccccccccccchHHHHHHHH------------------
Confidence 9999999998 889999999987765432 6889999999999976543 333322211
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 137 ------------------~~~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 137 ------------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp ------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence 224589999999999 999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.9e-29 Score=189.82 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+||+++|++|||||||+++++++.+...+.++. +. .+...+.+++..+.+.+|||+|.+++......+++.+|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~----~~-~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d 77 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI----EN-TFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN 77 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSC----CE-EEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCC
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcce----ec-ccceEEecCcEEEEeeecccccccccccccchhhhhhh
Confidence 45799999999999999999999988755443332 22 22344566788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||++++ +++..+..|+..+.+... ..++|+++|+||+|+...+. .++.. .+.+
T Consensus 78 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~r~v~~~~~~-~~a~---------------- 137 (167)
T d1xtqa1 78 GYILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGK-ALAE---------------- 137 (167)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--SSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH----------------
T ss_pred hhhhhcccchh-hhhhhhhhhhhhhhhccc--ccccceeeeccccccccccchhHHHHH-HHHH----------------
Confidence 99999999998 889999999988876532 26899999999999976543 33322 2221
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |+++++.|...+
T Consensus 138 -------------------~~~~~~~e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 138 -------------------SWNAAFLESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp -------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEecCCCCCHHHHHHHHHHHh
Confidence 223589999999999 999988877653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-28 Score=187.55 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=124.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....++... .........++..+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ 80 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV----EFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 80 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCC----CEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccc----cceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence 68999999999999999999999876544433322 22333345567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|+|+++. +++.....|+..+..... ...|+++++||+|+...... ++..+...
T Consensus 81 ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~------------------- 137 (166)
T d1z0fa1 81 LMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIILIGNKADLEAQRDVTYEEAKQFAE------------------- 137 (166)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------------------
T ss_pred EEEeccCch-HHHHHHHHHHHHHHhhcc---ccceEEEEcccccchhhcccHHHHHHHHHH-------------------
Confidence 999999997 889999999888766433 78899999999998654432 22222111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ |++++++|.+.+
T Consensus 138 -----------------~~~~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 138 -----------------ENGLLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 224589999999999 999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.5e-29 Score=189.34 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=125.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+++||+++|++|||||||+++++++.+.....+ +.+.. +......++..+.+.+||++|++.+......+++.+|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~----t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~ 76 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP----TIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 76 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT----TCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCC----ceeee-eeeeeecCcceEeeccccCCCccccccchHHHhhccc
Confidence 568999999999999999999999987554333 33322 2334455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... ..++|+++|+||+|+...... ++.. .+.+
T Consensus 77 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~-~~~~---------------- 136 (167)
T d1kaoa_ 77 GFILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGR-ALAE---------------- 136 (167)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHH-HHHH----------------
T ss_pred ceeeeeeecch-hhhhhhhchhhhhhhhcc--CCCCCEEEEEEccchhhcccchHHHHH-HHHH----------------
Confidence 99999999998 889999999988876432 268999999999999764432 2211 1111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 137 -------------------~~~~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 137 -------------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -------------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence 223579999999999 999999988754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-28 Score=188.86 Aligned_cols=161 Identities=13% Similarity=0.181 Sum_probs=123.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||+++++++.+...+.++. + ..+......++..+.+.+||++|++.+......+++.+|+
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~----~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~ 76 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV----E-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 76 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS----C-EEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcce----e-eccccceeeccccceeccccccccccccccccccccceeE
Confidence 5799999999999999999999998765444433 2 2223334556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|||+++. +++..+..|+..+..... ...++|+++|+||+|+...+. .++.. .+.+
T Consensus 77 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilVgnK~Dl~~~~~v~~~e~~-~~~~----------------- 136 (171)
T d2erxa1 77 FILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAE-ALAR----------------- 136 (171)
T ss_dssp EEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHH-HHHH-----------------
T ss_pred EEEEeecccc-cchhcccchhhhhhhhhc-cCCCCcEEEEeecccccccccccHHHHH-HHHH-----------------
Confidence 9999999997 789999998887765321 126889999999999976443 22222 2221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |+++++.|.+.++
T Consensus 137 ------------------~~~~~~~e~Sak~~~~v~e~f~~l~~~~~ 165 (171)
T d2erxa1 137 ------------------TWKCAFMETSAKLNHNVKELFQELLNLEK 165 (171)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------------HcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 224589999999999 9999999987653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-28 Score=186.38 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=127.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||+++++.+.+.....++. +...........+..+.+.+||++|++++...+..+++.+|
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 80 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI----GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS----SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCccccccc----ccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcc
Confidence 35799999999999999999999998865544433 22333333445666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|.++. .++.....|+..+.+... ++.|+++|+||+|+....... +..+.+.+
T Consensus 81 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~----------------- 139 (170)
T d1r2qa_ 81 AAIVVYDITNE-ESFARAKNWVKELQRQAS---PNIVIALSGNKADLANKRAVDFQEAQSYAD----------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred eEEEEeccchh-hHHHHHHHHhhhhhhccC---CCceEEeecccccccccccccHHHHHHHHH-----------------
Confidence 99999999997 789999998888876533 789999999999987654321 11111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |++++++|.+.++
T Consensus 140 ------------------~~~~~~~e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 140 ------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------------hcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 234689999999999 9999999998775
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.3e-29 Score=189.23 Aligned_cols=161 Identities=14% Similarity=0.226 Sum_probs=125.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+++||+++|++|||||||+++|+++.+.....++ .+. .+.......+..+.+.+||++|++.+......+++.++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 76 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 76 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCC----SEE-EEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCc----cce-eeccceeeeceeeeeeeeeccCccccccchhhhhhccc
Confidence 4579999999999999999999999875543333 222 22233445677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .+++.+..|+..+..... ..++|+++|+||+|+.......+..+.+.+
T Consensus 77 ~~iiv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------------------ 135 (166)
T d1ctqa_ 77 GFLCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKCDLAARTVESRQAQDLAR------------------ 135 (166)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHT--CSSCCEEEEEECTTCSCCCSCHHHHHHHHH------------------
T ss_pred ccceeeccccc-ccHHHHHHHHHHHHHhcC--CCCCeEEEEecccccccccccHHHHHHHHH------------------
Confidence 99999999997 889999999988876532 267899999999999754432222222222
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ |++++++|.+.+
T Consensus 136 -----------------~~~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 136 -----------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp -----------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 223579999999999 999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-28 Score=187.87 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=123.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|.+|||||||++++..+++.....++.... .....+..++....+.+|||||++++...+..+++.+|++
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE----FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 81 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE----EEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc----eeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence 689999999999999999999988765444443332 2223334456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|.++. +++..+..|+..+..... .+.|+++|+||+|+........ ....+.+
T Consensus 82 i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------------- 138 (174)
T d2bmea1 82 LLVYDITSR-ETYNALTNWLTDARMLAS---QNIVIILCGNKKDLDADREVTFLEASRFAQ------------------- 138 (174)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------------------
T ss_pred EEEEecccc-hhHHHHhhhhcccccccC---CceEEEEEEecccccchhchhhhHHHHHHH-------------------
Confidence 999999997 788999999988876543 6899999999999865443211 1112211
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. +++++++|.+.+
T Consensus 139 ----------------~~~~~~~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 139 ----------------ENELMFLETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp ----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------hCCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence 234689999999999 999999987753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.8e-28 Score=187.83 Aligned_cols=160 Identities=12% Similarity=0.201 Sum_probs=125.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+||+++|++|||||||++++.++.+.....++ .+. .+......++..+.+.+||++|++.+......+++.+|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t----~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 77 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPT----IED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 77 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTT----CCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcc----eee-ccccccccccccccccccccccccccccchhhhhhhcc
Confidence 4589999999999999999999998875544333 222 22333456777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|||+++. +++..+..|+..+.+... ..+.|+++++||+|+..... .+++.+...
T Consensus 78 ~~llv~d~~d~-~Sf~~~~~~~~~i~~~~~--~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~----------------- 137 (169)
T d1x1ra1 78 GFLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMAT----------------- 137 (169)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----------------
T ss_pred EEEEecccccc-hhhhccchhhHHHHhhcc--ccCccEEEEecccchhhhceeehhhHHHHHH-----------------
Confidence 99999999998 889999999998876532 26899999999999987643 333322221
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
..+++|++||||+|+ |++++++|.+.+
T Consensus 138 -------------------~~~~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 138 -------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp -------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 223579999999975 999999888754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3e-28 Score=186.97 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||+++++.+.+.....+ +.+ ......+..++..+.+.+||++|++++......+++.+|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~----t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 78 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDP----TIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGE 78 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCT----TCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCc----ccc-cceeeeeeecccccccccccccccccccccccccccccc
Confidence 457999999999999999999999887554333 222 223344566777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|.+++ .++..+..|+..+..... ....|+++|+||+|+.... ..++..+...
T Consensus 79 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~----------------- 138 (171)
T d2erya1 79 GFLLVFSVTDR-GSFEEIYKFQRQILRVKD--RDEFPMILIGNKADLDHQRQVTQEEGQQLAR----------------- 138 (171)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----------------
T ss_pred eEEEeeccccc-cchhhHHHHhHHHHhhcc--cCCCCEEEEEeccchhhhccchHHHHHHHHH-----------------
Confidence 99999999998 889999999988776533 2688999999999997653 3333222211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 139 -------------------~~~~~~~e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 139 -------------------QLKVTYMEASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence 224589999999998 999999988754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4e-28 Score=186.99 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=122.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++.++.+.....++. +.......+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~ 79 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI----GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 79 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC----SCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccc----cceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCe
Confidence 3689999999999999999999988755443332 222333344557777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|+|.+++ +++.....|+..+..... .++|+++|+||+|+....... +......+
T Consensus 80 ~i~v~d~~~~-~S~~~~~~~~~~i~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~------------------ 137 (175)
T d2f9la1 80 ALLVYDIAKH-LTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTDEARAFAE------------------ 137 (175)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCc-ccchhHHHHHHHHHHhcC---CCCcEEEEEeeecccccccchHHHHHHhhc------------------
Confidence 9999999998 889999999988877643 679999999999997643221 11111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+.++++|||++|+ ++++++++.+.
T Consensus 138 -----------------~~~~~~~e~Sa~~g~~i~e~f~~l~~~ 164 (175)
T d2f9la1 138 -----------------KNNLSFIETSALDSTNVEEAFKNILTE 164 (175)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------ccCceEEEEecCCCcCHHHHHHHHHHH
Confidence 234589999999999 99998887765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.7e-28 Score=185.72 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=117.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||+++++++++..... .++.+.......+...+..+.+.+|||||++++...+..+++.+|+
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~ 82 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF---ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC---CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccc---cceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence 4689999999999999999999988743222 2222333334445567777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|.++. .++.....++........ ...|+++|+||+|+...... ++..+. .+
T Consensus 83 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~~k~d~~~~~~v~~~~~~~~-~~----------------- 140 (170)
T d2g6ba1 83 LLLLYDVTNK-ASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHERVVKREDGEKL-AK----------------- 140 (170)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSCCCSCHHHHHHH-HH-----------------
T ss_pred eEEEecCCcc-cchhhhhhhhhhhhhccC---CCceEEEEEeeechhhcccccHHHHHHH-HH-----------------
Confidence 9999999997 788888888888776543 68899999999999875432 222221 11
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |++++++|.+.++
T Consensus 141 ------------------~~~~~~~e~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 141 ------------------EYGLPFMETSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp ------------------HHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence 224589999999999 9999999987653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.7e-27 Score=188.29 Aligned_cols=195 Identities=34% Similarity=0.577 Sum_probs=141.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~d~ 143 (268)
.+|+++|++|||||||+++|+++.+... .++..++.....+ ..+..+.+.+||+||++.++ ..+..+++.+++
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 74 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-----NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 74 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-----SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-----eeeeeeeeeeeeccccccccchhhhhhhhhccc
Confidence 4799999999999999999999887442 2333322222211 13334689999999998876 456788899999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc-c--c
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE-A--D 220 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~--~ 220 (268)
+++|+|+++....+.....++..++........++|++||+||+|+..+.+.+++.+.+++++............ . .
T Consensus 75 ~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~ 154 (207)
T d2fh5b1 75 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 154 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred cceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehh
Confidence 999999998623355666777777654333346789999999999999999999999999888877665443221 1 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-------chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-------i~~l~~~l~~~ 265 (268)
......++.....|.|+.+..++.++++||++|. ++++.+||.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 155 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 2233345666778899999999999999999874 88999999875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-27 Score=187.21 Aligned_cols=160 Identities=21% Similarity=0.329 Sum_probs=124.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+|+|++|||||||+++++.+.+...+.++.+.. .....+...+..+.+.+|||||++++...+..+++.+|+
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~----~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 81 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD----FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 81 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC----EEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCcccee----EEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3689999999999999999999988765554443332 222334456667899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|+|+++. +++.....++..+..... .+.|+++|+||+|+........ ......+
T Consensus 82 ~i~v~d~t~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------------------ 139 (194)
T d2bcgy1 82 IIIVYDVTDQ-ESFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLKDKRVVEYDVAKEFAD------------------ 139 (194)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH------------------
T ss_pred EEEEEeCcch-hhhhhHhhhhhhhhhccc---CCceEEEEEeccccccccchhHHHHhhhhh------------------
Confidence 9999999997 788888888877765432 7899999999999987543221 1111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.|++|||++|. |++++++|.+.+
T Consensus 140 -----------------~~~~~~~e~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 140 -----------------ANKMPFLETSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp -----------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------ccCcceEEEecCcCccHHHHHHHHHHHH
Confidence 234579999999999 999999988754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.9e-28 Score=187.34 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=123.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++..||+++|++|||||||+++|+.+.|...+.++.. .. ....+..++..+.+.+||++|++.+...+..+++.+
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~----~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 77 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF----DN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC----CE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee----ec-eeeeeeccCcceEEEeecccccccchhhhhhccccc
Confidence 4568999999999999999999999988665554432 22 223345567778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~ 220 (268)
|++++|||+++. ++++.+..|+........ .++|+++|+||+|+.......+ .... ... ....
T Consensus 78 ~~~ilv~d~~~~-~sf~~i~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~---~~~~-------~~~~~~~~-- 141 (183)
T d1mh1a_ 78 DVSLICFSLVSP-ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIE---KLKE-------KKLTPITY-- 141 (183)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHH---HHHH-------TTCCCCCH--
T ss_pred ceeeeeeccchH-HHHHHHHHHHHHHHHHhC---CCCcEEEEeecccchhhhhhhh---hhhh-------ccccchhh--
Confidence 999999999997 889888876666665432 6899999999999865422110 0000 000 0000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....++.-.+.++|+||||++|. ++++++.|.+.
T Consensus 142 ----------~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 142 ----------PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp ----------HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHH
Confidence 000001111345789999999999 99998888764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.8e-28 Score=188.28 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=123.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..||+++|++|||||||++++..+.|...+.++. +.. .......++..+.+.+|||+|++++...+..+++.+|+
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 77 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----FDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 77 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCce----eee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccce
Confidence 4699999999999999999999998865444333 322 23334456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|||+++. ++++.+..|+........ .+.|+++|+||+|+.......+. +.. .....+..++.
T Consensus 78 ~ilv~d~~~~-~Sf~~~~~~~~~~~~~~~---~~~~i~lvgnK~Dl~~~~~~~~~---~~~------~~~~~v~~~~~-- 142 (191)
T d2ngra_ 78 FLVCFSVVSP-SSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEK---LAK------NKQKPITPETA-- 142 (191)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHC---TTCCEEEEEECGGGGGCHHHHHH---HHT------TTCCCCCHHHH--
T ss_pred eecccccchH-HHHHHHHHHHHHHHhhcC---CCCceEEEeccccccccchhhhh---hhh------cccccccHHHH--
Confidence 9999999998 889999887777766532 78999999999999754221110 000 00000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..|....+.++|+||||++|. |+++++.+.+.
T Consensus 143 ----------~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 143 ----------EKLARDLKAVKYVECSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp ----------HHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------HHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 002221344689999999998 99998877654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=3.8e-28 Score=186.77 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|.+|||||||+++|.++.+.....++. +.......+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~ 81 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI----GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 81 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHH----CEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccc----cceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence 4689999999999999999999988754443332 222233345556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|||++++ .++..+..|+..+..... .+.|+++|+||.|+...... ++..+. ..
T Consensus 82 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~~k~D~~~~~~~~~~~~~~~-~~----------------- 139 (173)
T d2fu5c1 82 IMLVYDITNE-KSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVNDKRQVSKERGEKL-AL----------------- 139 (173)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CCSCCCSCHHHHHHH-HH-----------------
T ss_pred EEEEEECCCh-hhHHHHHHHHHHhhhhcc---CCceEEEEEecccchhhcccHHHHHHHH-HH-----------------
Confidence 9999999997 788999898888765543 78999999999999875433 222211 11
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ |+++++||.+.+
T Consensus 140 ------------------~~~~~~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 140 ------------------DYGIKFMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp ------------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ------------------hcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224589999999999 999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.9e-28 Score=185.13 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.|...+.++. +.......+...+..+.+.+|||+|++++...+..+++.+|++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~----~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ 79 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI----GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS----SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccc----cceeeccccccccccccccccccCCchhHHHHHHHHHhccceE
Confidence 589999999999999999999998865444333 3222333455677778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-----CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-----TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
++|||.++. .++..+..|+........ ...|+++++||+|+.... ..++..+...
T Consensus 80 ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~---------------- 139 (170)
T d1ek0a_ 80 LVVYDVTKP-QSFIKARHWVKELHEQAS---KDIIIALVGNKIDMLQEGGERKVAREEGEKLAE---------------- 139 (170)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH----------------
T ss_pred EEEEeCCcc-cchhhhhhhhhhhccccc---cccceeeeecccccccccchhhhhHHHHHHHHH----------------
Confidence 999999997 889999999887766533 688999999999986543 2222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|. |++++++|.+.+|
T Consensus 140 --------------------~~~~~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 140 --------------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp --------------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred --------------------HcCCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence 234689999999999 9999999998876
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9e-28 Score=184.63 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=120.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++++...+.++..... ........+..+.+.+||++|++.+...+..+++.+|++
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 79 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----GARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 79 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE----EEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeecc----ceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEE
Confidence 5899999999999999999999987654443333222 222233355567999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|+|+++. .++..+..|+..+..... .++|+++|+||+|+....... +....+.+
T Consensus 80 ilv~d~~~~-~sf~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~a~------------------- 136 (173)
T d2a5ja1 80 LLVYDITRR-ETFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLESRRDVKREEGEAFAR------------------- 136 (173)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------------------
T ss_pred EEEEeecCh-HHHHhHHHHHHHHHHhCC---CCCeEEEEecCCchhhhhhhHHHHHHHHHH-------------------
Confidence 999999998 889999999988876543 789999999999986543221 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. |++++.+|.+.
T Consensus 137 ----------------~~~~~~~e~Sa~tg~~V~e~f~~i~~~ 163 (173)
T d2a5ja1 137 ----------------EHGLIFMETSAKTACNVEEAFINTAKE 163 (173)
T ss_dssp ----------------HHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----------------HcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 224589999999999 99998888765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-27 Score=183.09 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=109.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||+++++++.+.....++....... ......++....+.+|||+|++++...+..+++.++++
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT---KEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 79 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEE---EEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceee---eeeeecCcccccceeeccCCchhhhhHHHHHhhccceE
Confidence 589999999999999999999988765444333222211 11122233446789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+++. .++..+..|+.++..... ....++|+++|+||+|+..... ..+..+.+.+
T Consensus 80 ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~----------------- 141 (175)
T d1ky3a_ 80 VLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----------------- 141 (175)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEeecccc-cccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH-----------------
Confidence 999999997 788999999888765322 1235889999999999975432 1111112211
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.++|++|||++|. |++++++|.+.+
T Consensus 142 -----------------~~~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 142 -----------------SLGDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp -----------------HTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------HcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 1334679999999998 999999987643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.8e-27 Score=183.60 Aligned_cols=162 Identities=19% Similarity=0.265 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...||+++|++|||||||++++.++.+.....++.. .......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG----VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 81 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS----EEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCcccccee----ecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCC
Confidence 346899999999999999999999887554433322 2222233455666789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++.....|+..+..... ....|+++++||.|........+....+.+
T Consensus 82 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~------------------ 140 (177)
T d1x3sa1 82 GVILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFAR------------------ 140 (177)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHHH------------------
T ss_pred EEEEEEECCCc-cccccchhhhhhhccccc--ccceeeEEEeeccccccccccHHHHHHHHH------------------
Confidence 99999999997 788999999988876543 267899999999998764432221122221
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 141 -----------------~~~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 141 -----------------KHSMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234689999999999 999999887653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.1e-27 Score=182.88 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=122.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||+++++.+.+.....++.... .....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~----~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 78 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID----FKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 78 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CC----EEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCcccee----EEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 589999999999999999999998765544444333 2233345567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|.++. +++..+..|+........ ...|+++++||.|+.......+..+.+.+
T Consensus 79 i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~~i~~~~k~d~~~~~~~~~~~~~~~~-------------------- 134 (166)
T d1g16a_ 79 ILVYDITDE-RTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAK-------------------- 134 (166)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTCCSCHHHHHHHHH--------------------
T ss_pred EEEEECCCc-cCHHHHHhhhhhhhcccc---CcceeeeecchhhhhhhhhhHHHHHHHHH--------------------
Confidence 999999998 788888888777766543 67899999999999876544333222222
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 135 ---------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp ---------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------hcCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence 224689999999999 999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.7e-27 Score=182.29 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=118.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.||+++|++|||||||+++++.+.|...+.+|+ + ..+......++..+.+.+||++|+..+. ....+++.+|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi----~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~ 75 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL----E-STYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEG 75 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC----C-EEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce----e-ccccccccccccceEEEEeecccccccc-cchhhhccccc
Confidence 4699999999999999999999998865544433 2 2233344557777899999999998864 56678899999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. .++..+..|......... ..+.|+++|+||+|+.... +.++..+. .+
T Consensus 76 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~r~V~~~e~~~~-a~----------------- 134 (168)
T d2atva1 76 FVLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKL-AT----------------- 134 (168)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHH-HH-----------------
T ss_pred ceeecccCCc-cchhhhhhhccccccccc--ccCcceeeeccchhhhhhccCcHHHHHHH-HH-----------------
Confidence 9999999998 788888877655444322 2689999999999997643 33333222 21
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ |++++..|.+.+
T Consensus 135 ------------------~~~~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 135 ------------------ELACAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp ------------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ------------------HhCCeEEEEccccCCcCHHHHHHHHHHHH
Confidence 223589999999974 899988887653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.7e-27 Score=182.96 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=121.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.|...+.++. ... .......++..+.+.+||++|++.+...+..+++.+|++
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~----~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 77 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 77 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCce----eec-ccccccccceEEeeccccccccccccccccchhhhhhhh
Confidence 589999999999999999999999866544433 222 223345577789999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|||+++. ++|+.+..|+........ .+.|+++||||+|+......... +.. .....++.++...
T Consensus 78 ilv~d~~~~-~Sf~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~---~~~------~~~~~V~~~e~~~- 143 (179)
T d1m7ba_ 78 LICFDISRP-ETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVE---LSN------HRQTPVSYDQGAN- 143 (179)
T ss_dssp EEEEETTCH-HHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHH---HHT------TTCCCCCHHHHHH-
T ss_pred heeeecccC-CCHHHHHHHHHHHHhccC---CcceEEEEEecccccccchhhHH---Hhh------hhcCcchHHHHHH-
Confidence 999999998 889998888777665432 68999999999998643211100 000 0000000000000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhh
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 265 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 265 (268)
+....+...|+||||++|+ ++++++.+.+.
T Consensus 144 -----------~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 144 -----------MAKQIGAATYIECSALQSENSVRDIFHVATLA 175 (179)
T ss_dssp -----------HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred -----------HHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 1111234589999999995 99999887764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-27 Score=185.74 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecc------cccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE------STKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
+||+++|++|||||||+++|.++.+.....++............. ....+..+.+.+|||||+++++..+..++
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~ 85 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF 85 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHH
Confidence 689999999999999999999998866554443322211111110 11123336899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++|++|+|||+++. .+++.+..|+..+..+.. ....|+++|+||+|+..... .++..+. .+
T Consensus 86 ~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~v~~~e~~~~-~~------------ 149 (186)
T d2f7sa1 86 RDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQAREL-AD------------ 149 (186)
T ss_dssp TTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHH-HH------------
T ss_pred hcCCEEEEEEecccc-ccceeeeeccchhhhhcc--CCCceEEEEeeeccchhhhcchHHHHHHH-HH------------
Confidence 999999999999997 788888888877665533 36789999999999976543 2222211 11
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ |++++++|.+.+
T Consensus 150 -----------------------~~~~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 150 -----------------------KYGIPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp -----------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999988753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.8e-27 Score=178.92 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=123.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+||+++|++|||||||+++++++.+...+.++ .+...........+..+.+.+||++|..+.......++..+|
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 80 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHT----IGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 80 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----C----CSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccc----eeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccc
Confidence 4579999999999999999999998875544433 222333334455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++++|.++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+...+
T Consensus 81 ~~i~~~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~---------------- 143 (174)
T d1wmsa_ 81 CCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---------------- 143 (174)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------
T ss_pred eEEEEEeeecc-cccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH----------------
Confidence 99999999997 788888888877765322 113578999999999996533 33333222111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|+||||++|. |++++++|.+.+
T Consensus 144 -------------------~~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 144 -------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp -------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------cCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 334679999999999 999999887653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=5.3e-27 Score=182.05 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=123.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||+++++++.+...+.++.. ...........+..+.+.+|||+|+..+...+..++..+|++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 78 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG----ADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 78 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS----EEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccc----eeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEE
Confidence 4899999999999999999999988655444433 333333445566668999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|.++. .++..+..|+..+..... ....++|+++|+||+|+.......+..+.+..
T Consensus 79 i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~------------------- 138 (184)
T d1vg8a_ 79 VLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY------------------- 138 (184)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-------------------
T ss_pred EEeecccch-hhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH-------------------
Confidence 999999987 778888888887766432 11257899999999998765433322222111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....++|++|||++|. |++++++|.+.
T Consensus 139 ---------------~~~~~~~~e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 139 ---------------SKNNIPYFETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp ---------------HTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---------------HhcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence 0335689999999999 99999998765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.8e-27 Score=180.34 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=116.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-hhhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-RPKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-~~~~~~~~~~~d 142 (268)
-+||+++|++|||||||++++.+..+... +..++++...+...+..++..+.+.+||++|.... +.....+++.+|
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~ 79 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMD---SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTC---CC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCcc---ccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccc
Confidence 47999999999999999999998765321 11222222333344556777788899997753211 224667899999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||+++. .++..+..|+..+..... ..++|+++|+||+|+...+. .++.. .+.+
T Consensus 80 ~~ilvfd~t~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~v~~~~~~-~~a~---------------- 139 (172)
T d2g3ya1 80 AYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGR-ACAV---------------- 139 (172)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH----------------
T ss_pred eeeeeeccccc-chhhhhhhhhhhhhhccc--cCCceEEEEeccccccccccccHHHHH-HHHH----------------
Confidence 99999999997 889999999888876532 26899999999999976542 33222 2221
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |++++++|.+.+
T Consensus 140 -------------------~~~~~~~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 140 -------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp -------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 224589999999998 999999988764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-26 Score=177.91 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..||+++|++|||||||++++.++.+.... ++.. ..+...+.++|..+.+.+|||+|+.++ .|++.+
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-----~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~a 71 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLE-----KTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWA 71 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-----CSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-----Cccc-eeEEEEeecCceEEEEEEeeccccccc-----cccccc
Confidence 35789999999999999999999999874321 2222 223444566888899999999998864 478899
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. ++++.+..|...+.........+.|+++|+||.|+..........+..+.
T Consensus 72 d~~ilVfd~~~~-~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~----------------- 133 (175)
T d2bmja1 72 DAVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA----------------- 133 (175)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHH-----------------
T ss_pred ceeEEEeecccc-hhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHH-----------------
Confidence 999999999997 88999988887775433323477899999999998553321100111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+..-..+++|++|||++|. +++++..|.+.
T Consensus 134 --------------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 164 (175)
T d2bmja1 134 --------------LCADMKRCSYYETCATYGLNVDRVFQEVAQK 164 (175)
T ss_dssp --------------HHHTSTTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred --------------HHHHhCCCeEEEeCCCCCcCHHHHHHHHHHH
Confidence 1001345789999999998 99998877764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.1e-26 Score=175.41 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=116.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-hHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~d 142 (268)
.+||+++|++|||||||++++..+.+.....++..... ........+....+.+||++|...+.. .+..|++.+|
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 77 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF----RERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 77 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE----EEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccccc----ceeeeeeeccceEEEEEeccCchhhccccceeeecCCC
Confidence 46899999999999999999999988654444333222 122233455557899999999877654 4678999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||+++. ++++.+..|+..+..+.. ..++|++||+||+|+.... +.++..+ +.+
T Consensus 78 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~~~---------------- 137 (165)
T d1z06a1 78 AVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQK-FAD---------------- 137 (165)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH----------------
T ss_pred ceEEEEEeehh-hhhhhhhhhhHHHHhhcc--CCCCeEEEEeccccchhccchhHHHHHH-HHH----------------
Confidence 99999999998 889999999998877543 2689999999999997653 2333222 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC----chhHHHHHH
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFIR 263 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~----i~~l~~~l~ 263 (268)
..+++|++|||++|. |++++++|+
T Consensus 138 -------------------~~~~~~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 138 -------------------THSMPLFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp -------------------HTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred -------------------HCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence 223579999999853 788887763
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.93 E-value=4.9e-26 Score=172.01 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=121.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++++....... ...... .....+.+.+||+||...+......++..++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 71 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI---GFNVET------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS---SCCEEE------EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccce---eeEEEE------EeeeeEEEEEecCCCcccchhhhhhhhccceeE
Confidence 48999999999999999999988874322211 111111 123337899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++++|..+. .++.....++.++...... ...|+++++||.|+.......++.......
T Consensus 72 i~~~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~------------------- 129 (160)
T d1r8sa_ 72 IFVVDSNDR-ERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLH------------------- 129 (160)
T ss_dssp EEEEETTCG-GGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTCCCHHHHHHHTTGG-------------------
T ss_pred EEEEEecCh-HHHHHHHHHHHHHHHhhcc--cCceEEEEeecccccccccHHHHHHHHHHH-------------------
Confidence 999999997 7788888898888876542 788999999999998776655433221100
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ..++++++|||++|+ ++++++||.+.+
T Consensus 130 -----------~~~-~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 130 -----------SLR-HRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp -----------GCS-SCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred -----------HHh-hCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 011 345789999999999 999999998864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.93 E-value=5.3e-25 Score=169.31 Aligned_cols=166 Identities=21% Similarity=0.319 Sum_probs=122.2
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
+..++++||+++|.+|||||||++++.++++... ........... ...+ ..+.+||++|++..+..+..++
T Consensus 10 ~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~---~~~~~~~~~~~----~~~~--~~~~~~d~~~~~~~~~~~~~~~ 80 (177)
T d1zj6a1 10 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT---SPTIGSNVEEI----VINN--TRFLMWDIGGQESLRSSWNTYY 80 (177)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEE---ECCSCSSCEEE----EETT--EEEEEEECCC----CGGGHHHH
T ss_pred HhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCcc---ccccceeEEEE----eecc--eEEEEeccccccccccchhhhh
Confidence 3357889999999999999999999999886321 11111111111 1122 6899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
..++++++|+|.++. .++.....+......... ..+.|+++|+||+|+.......++.+.+...
T Consensus 81 ~~~~~~i~v~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~------------- 144 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT------------- 144 (177)
T ss_dssp TTCCEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG-------------
T ss_pred ccceeeeeecccccc-cchhhhhhhhhhhhhccc--ccceEEEEEEEcccccccCcHHHHHHHHHHH-------------
Confidence 999999999999997 778877777666665543 3799999999999998777765554443210
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.....++++++|||++|+ ++++++||.++++
T Consensus 145 ------------------~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 145 ------------------SIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp ------------------GCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ------------------hhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 001356799999999999 9999999999876
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.2e-25 Score=177.49 Aligned_cols=194 Identities=30% Similarity=0.413 Sum_probs=138.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh----c
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF----L 138 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~----~ 138 (268)
.+++|+++|++|||||||+|+|+++++... +++......+..++ ..+.+|||||+..++..+..+ .
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~--------tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~ 71 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------VVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRA 71 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB--------CCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe--------EEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHh
Confidence 467999999999999999999999876321 11111222233344 578999999999877666554 4
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNS-TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV- 216 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~- 216 (268)
..++.+++++|+.+...++.....++.++.... .....++|+++|+||+|+......+.+.+.++++++.+.......
T Consensus 72 ~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 151 (209)
T d1nrjb_ 72 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 151 (209)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556899999998876567888888876654321 112378999999999999988888888888888887776654421
Q ss_pred --------ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhc
Q 024385 217 --------SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266 (268)
Q Consensus 217 --------~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 266 (268)
........+........|.|+.+...+.+++.|++.++++++.+||.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~ekl 209 (209)
T d1nrjb_ 152 NEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209 (209)
T ss_dssp HC--------------CTTC----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred ceeeeccchhhhHHHHHHhhccccccchhhCcCCceEEEEeeccccHHHHHHHHHHhC
Confidence 11122333445555677889999999999999999999999999999875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=3.3e-25 Score=170.87 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
.+|+++|.+|||||||+|+|++.+... .+..+.++...........+ ..+.+|||||+...... ...
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 80 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAP---ISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 80 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC---CCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee---ecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence 479999999999999999999876421 11122222111221222233 58899999998654333 335
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++|+|+|++++ +.....++...++... .+.|+++|+||+|+... .++..+.+.+
T Consensus 81 ~~~~ad~il~v~D~~~~---~~~~~~~i~~~l~~~~---~~~piilv~NK~Dl~~~--~~~~~~~~~~------------ 140 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHP---PTPEDELVARALKPLV---GKVPILLVGNKLDAAKY--PEEAMKAYHE------------ 140 (178)
T ss_dssp HTSSCSEEEEEEETTSC---CCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS--HHHHHHHHHH------------
T ss_pred ccccccceeeeechhhh---hcccccchhhheeccc---cchhhhhhhcccccccC--HHHHHHHHHh------------
Confidence 57889999999999886 2334455555555432 67899999999999653 2222222111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
......++++||++|+ +++|+++|.+.+|
T Consensus 141 ----------------------~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 141 ----------------------LLPEAEPRMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp ----------------------TSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred ----------------------hcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 1122367889999999 9999999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.3e-24 Score=161.15 Aligned_cols=164 Identities=21% Similarity=0.276 Sum_probs=121.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||+|++.++.+.. ..|+.+..... ....+ ....+||++|...+......++..+++++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEE--LAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 72 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEE--ECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEE--eccCC--eeEEEEeeccchhhhhhHhhhhhheeeee
Confidence 79999999999999999999987642 22333322222 12222 57899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+++|.++. .++.....++........ ..+.|+++++||.|+.......++.+.+.. ..
T Consensus 73 ~~~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~--------------~~----- 130 (166)
T d2qtvb1 73 FLVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL--------------LN----- 130 (166)
T ss_dssp EEEETTCG-GGHHHHHHHHHHHHTCTT--TTTCCEEEEEECTTSSSCCCHHHHHHHHTC--------------SS-----
T ss_pred eeccccch-hhhhhhhHHHHhhhhhhc--cCCceEEEEeccccccccCCHHHHHHHhhh--------------hh-----
Confidence 99999997 777888888777766543 378899999999999877776665443321 00
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
............+++++|||++|+ ++++++||.++
T Consensus 131 -----~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~ 166 (166)
T d2qtvb1 131 -----TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166 (166)
T ss_dssp -----CCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred -----hhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence 000001112446789999999999 99999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=2.3e-24 Score=166.25 Aligned_cols=167 Identities=20% Similarity=0.202 Sum_probs=107.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccc-eeeccccc--eEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV-TSMEPNED--TFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
+..+|+++|++|+|||||+|+|++........ .+.+...+ ...........+ ..+.++|+||+.++.......+.
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence 45689999999999999999998654211110 00000001 111111122233 67899999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|++++|+|+.++. . .+....+ ..+.. .++|+++|+||+|+..........+.+...++.
T Consensus 82 ~~d~~ilv~d~~~g~-~-~~~~~~~-~~~~~-----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~----------- 142 (179)
T d1wb1a4 82 IIDLALIVVDAKEGP-K-TQTGEHM-LILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS----------- 142 (179)
T ss_dssp SCCEEEEEEETTTCS-C-HHHHHHH-HHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH-----------
T ss_pred hcccccccccccccc-c-hhhhhhh-hhhhh-----cCCcceeccccccccCHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999972 2 2222333 33332 688999999999997653333222222222221
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.. ...++++++||++|+ +++|+++|.+.++
T Consensus 143 ----------------~~~-~~~~~iv~iSA~~g~gi~eL~~~I~~~l~ 174 (179)
T d1wb1a4 143 ----------------THN-LKNSSIIPISAKTGFGVDELKNLIITTLN 174 (179)
T ss_dssp ----------------SSS-GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------hhc-CCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence 000 234689999999999 9999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=2.9e-23 Score=165.90 Aligned_cols=123 Identities=17% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEee------------cccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH------------SESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+.+.|+|+|++|+|||||+|+|++.........+........... ...........+.++|||||.+|
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 445699999999999999999986432110111111111111110 01112222357899999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
.......+..+|++|+|+|+.++. ......+...+.. .++|+++|+||+|+....
T Consensus 84 ~~~~~~~~~~~D~~ilVvda~~g~---~~~~~~~~~~~~~-----~~~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 84 TTLRKRGGALADLAILIVDINEGF---KPQTQEALNILRM-----YRTPFVVAANKIDRIHGW 138 (227)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCC---CHHHHHHHHHHHH-----TTCCEEEEEECGGGSTTC
T ss_pred cccchhcccccceEEEEEecccCc---ccchhHHHHHhhc-----CCCeEEEEEECccCCCch
Confidence 888888999999999999999872 3333333333332 688999999999997644
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.90 E-value=6.6e-23 Score=155.76 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=122.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.++.||+++|++|||||||+++++++.+... .++.+..... ...++ +.+.+||.+|...+......++..+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVET--VTYKN--LKFQVWDLGGLTSIRPYWRCYYSNT 73 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEE--EEETT--EEEEEEEECCCGGGGGGGGGGCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeee--eccCc--eEEEEeeccccccccccchhhhhhh
Confidence 3568999999999999999999999887431 1222211111 12223 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++++++|+.+. .+......++........ ....|+++++||.|+.......++.+.+...
T Consensus 74 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~---------------- 134 (169)
T d1upta_ 74 DAVIYVVDSCDR-DRIGISKSELVAMLEEEE--LRKAILVVFANKQDMEQAMTSSEMANSLGLP---------------- 134 (169)
T ss_dssp SEEEEEEETTCC-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG----------------
T ss_pred hhhhhhhhhhhc-chhhhccchhhhhhhhhc--cccceEEEEEeeccccccccHHHHHHHHHHH----------------
Confidence 999999999987 667777777666665433 3788999999999998877766554433210
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ...+++|++|||++|+ ++++++||.+.++
T Consensus 135 --------------~~-~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 135 --------------AL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp --------------GC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --------------HH-hcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 1356799999999999 9999999988753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.90 E-value=6.8e-23 Score=158.13 Aligned_cols=174 Identities=26% Similarity=0.362 Sum_probs=117.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++..||+++|++|||||||+++|+++.+... .++...+.... ...+ ..+..||++|+..+...+..+.+..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEEL------TIAG--MTFTTFDLGGHIQARRVWKNYLPAI 81 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE------EETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeEE------Eecc--cccccccccchhhhhhHHhhhhccc
Confidence 6789999999999999999999999876432 22222222211 1223 5789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++++++|+++. ........++........ ..+.|+++++||.|+.......++.+.+... ..
T Consensus 82 ~~~~~~~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~--------------~~ 144 (186)
T d1f6ba_ 82 NGIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGLY--------------GQ 144 (186)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTCT--------------TT
T ss_pred ceeeeeeeccCc-cchHHHHHHHHHhhcccc--cCCCceEEEEeccCccccCCHHHHHHHHhhc--------------cc
Confidence 999999999997 667777776666665443 2789999999999998877766554443210 00
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....... . . -.....++++++|||++|+ |+++++||.+++
T Consensus 145 ~~~~~~~-~---~-~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 145 TTGKGSV-S---L-KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CCCSSCC-C---T-TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred chhhhhh-h---H-HHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 0000000 0 0 0001345789999999999 999999999875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.5e-23 Score=158.68 Aligned_cols=151 Identities=21% Similarity=0.298 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
.+|+++|++|||||||+|+|++.+.. ..+..+++............+ ..+.++|+||..+.... ...
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAA---IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ 76 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS---CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---EeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHH
Confidence 58999999999999999999987652 222223333233333334445 57899999997654332 234
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
++..+|++++++|+.+. ........+...+... ..+.|+++|+||+|+......
T Consensus 77 ~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~----~~~~~iilv~NK~Dl~~~~~~--------------------- 130 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL----PAKLPITVVRNKADITGETLG--------------------- 130 (161)
T ss_dssp HHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHS----CTTCCEEEEEECHHHHCCCCE---------------------
T ss_pred HHHhccccceeeccccc-cchhhhhhhhhhhhhc----ccccceeeccchhhhhhhHHH---------------------
Confidence 57889999999999987 5454444443333322 257999999999997542110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+ ....+++++||++|+ |++|+++|.+.+
T Consensus 131 -------------------~~~-~~~~~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 131 -------------------MSE-VNGHALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp -------------------EEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred -------------------HHH-hCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence 111 234689999999999 999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.8e-23 Score=161.27 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=98.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhHhhhc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKLDEFL 138 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~~ 138 (268)
.|+++|.+|||||||+|+|++.... ..+....+....+.......+ ..+.+|||||.... ......++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~---~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~ 77 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPK---IAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHI 77 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE---ECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc---eeccCCCceeeeeceeeecCC--CeEEEcCCCeeecCchHHHHHHHHHHHHH
Confidence 5999999999999999999987642 222222222222222222223 57899999996432 22344567
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
..++++++++|+... .......+...+... .....++|+++|+||+|+......++ +.+.+.
T Consensus 78 ~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~-~~~~~~~p~iiv~NK~D~~~~~~~~~----~~~~~~----------- 139 (180)
T d1udxa2 78 ARTRVLLYVLDAADE--PLKTLETLRKEVGAY-DPALLRRPSLVALNKVDLLEEEAVKA----LADALA----------- 139 (180)
T ss_dssp TSSSEEEEEEETTSC--HHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCTTSCHHHHHH----HHHHHH-----------
T ss_pred Hhhhhhhhhcccccc--cccchhhhhhhhhcc-ccccchhhhhhhhhhhhhhhHHHHHH----HHHHHH-----------
Confidence 889999999999774 223333332222111 00114689999999999976432222 222111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++|+ +++|++.|.+.+
T Consensus 140 ---------------------~~~~~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 140 ---------------------REGLAVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp ---------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------------hcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999997765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.88 E-value=5.7e-23 Score=159.94 Aligned_cols=171 Identities=16% Similarity=0.113 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC-----C--cccc-----cceeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG-----S--THQG-----TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~-----~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+..+|+++|+.++|||||+++|++. . +... .....+.+.+.......+...+ ..++++|||||.+|
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f 79 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY 79 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence 3468999999999999999999741 0 0000 0001111111111111122233 68999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
.......++.+|++|+|+|+.++. ..+..+.+..+... ...|+|+++||+|+.... +..+.+.++++.+.
T Consensus 80 ~~~~~~~~~~aD~allVVda~~G~--~~QT~~~~~~a~~~-----~~~~iIv~iNK~D~~~~~---~~~~~i~~~i~~~l 149 (196)
T d1d2ea3 80 VKNMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQI-----GVEHVVVYVNKADAVQDS---EMVELVELEIRELL 149 (196)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHHT-----TCCCEEEEEECGGGCSCH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCeEEEEEEcCCCC--chhHHHHHHHHHHh-----cCCcEEEEEecccccccH---HHHHHHHHHHHHHH
Confidence 999999999999999999999982 34444444444432 446899999999997532 22233333333321
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~p 268 (268)
... ......++++++||++| .+.+|++.|.+++||
T Consensus 150 ~~~-----------------------~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 150 TEF-----------------------GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp HHT-----------------------TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHh-----------------------CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 110 00123468999999998 489999999999986
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.88 E-value=1.2e-22 Score=158.61 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccc---ce--e-----------eccccceEEeeccccc----CCceeeEEEE
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT---VT--S-----------MEPNEDTFVLHSESTK----KGKIKPVHLV 122 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~---~~--~-----------~~~~~~~~~~~~~~~~----~~~~~~~~i~ 122 (268)
...+|+++|+.++|||||+++|++....... .. + ..+............. ......+.++
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence 4568999999999999999999864321100 00 0 0001111111111111 1112568999
Q ss_pred eCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 123 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
|||||.+|.......+..+|++++|+|+.++ .......+.+..+... ...+++++.||+|+.+.....+..+.+
T Consensus 84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g-~~~~~t~e~~~~~~~~-----~~~~iiv~inK~D~~d~~~~~~~~~~~ 157 (195)
T d1kk1a3 84 DAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYRQI 157 (195)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ccchhhhhhHHhhcccccccccccccchhhh-hhhhhhHHHHHHHHHh-----cCccceeeeecccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999997 2223333433333321 334588899999997643222222222
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.+.. .....++++++||++|+ |++|++.|.+++|
T Consensus 158 ~~~~~~-----------------------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 158 KEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcc-----------------------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 221110 01235689999999999 9999999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.5e-23 Score=158.32 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=92.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------hhHhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------PKLDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~~~~~ 136 (268)
+|+++|++|||||||+|+|++.... ..+..+..+...........+ ..+.++|+||..... .....
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKA---IVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcc---eecccCceeeccccccccccc--cccccccccceeeeecccccccccccccc
Confidence 6899999999999999999986542 112222222111111122223 678999999964322 22345
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
++..+|++++++|+++. . ......+...+.. .++|+++|+||+|+... ....+.+++.+
T Consensus 77 ~~~~ad~i~~~~~~~~~-~--~~~~~~~~~~l~~-----~~~pviiv~NK~Dl~~~-----~~~~~~~~~~~-------- 135 (171)
T d1mkya1 77 MIREADLVLFVVDGKRG-I--TKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREVKPELYS-------- 135 (171)
T ss_dssp HHTTCSEEEEEEETTTC-C--CHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHTHHHHGG--------
T ss_pred ccccCcEEEEeeccccc-c--ccccccccccccc-----ccccccccchhhhhhhh-----hhhHHHHHHHh--------
Confidence 57889999999999886 2 2233334444432 57899999999998532 11111111110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++|. |++|+++|.++++
T Consensus 136 -----------------------~~~~~~i~iSAk~g~gid~L~~~i~~~l~ 164 (171)
T d1mkya1 136 -----------------------LGFGEPIPVSAEHNINLDTMLETIIKKLE 164 (171)
T ss_dssp -----------------------GSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------------cCCCCeEEEecCCCCCHHHHHHHHHHhCC
Confidence 011246889999999 9999999998765
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.88 E-value=3.5e-22 Score=157.18 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=106.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cceeeccccceEEe--------------ecc---c---ccCCce
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVTSMEPNEDTFVL--------------HSE---S---TKKGKI 116 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~~~~~~~~~~~~--------------~~~---~---~~~~~~ 116 (268)
++..+|+++|+.++|||||+++|++..-... .............. ... . ......
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 4557999999999999999999986321100 00000000000000 000 0 001112
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
..++++|||||.+|.......+..+|++|+|+|+.++. ......+.+..+... .-.|+||++||+|+.......
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi-~~~~t~e~~~~~~~~-----~i~~iIV~vNK~Dl~~~~~~~ 159 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-PQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEAL 159 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCS-SCHHHHHHHHHHHHT-----TCCCEEEEEECGGGSCHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccc-cchhHHHHHHHHHHc-----CCceeeeccccCCCccchHHH
Confidence 46899999999999999999999999999999999972 122333333322221 335899999999997643322
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....+.+.+.. ....+++++++||++|. |++|++.|.+++|+
T Consensus 160 ~~~~~~~~~l~~-----------------------------~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 160 SQYRQIKQFTKG-----------------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcc-----------------------------ccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 222222221110 01235689999999999 99999999999885
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=2.4e-22 Score=156.37 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
++.||+++|+.|||||||++++..+.++.....+. .+. ...+.+.+|||+|++.++..+..|++.++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~-----------~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~ 67 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVET-----------HFT--FKDLHFKMFDVGGQRSERKKWIHCFEGVT 67 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEEE-----------EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCccEEEE-----------EEE--eeeeeeeeeccccccccccchhhcccCCc
Confidence 35799999999999999999998876643222111 111 22278999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCH----------HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC-----------------CCH
Q 024385 143 GIVFVVDALEFLPNC----------SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA-----------------HTK 195 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~-----------------~~~ 195 (268)
++++|+|.++. .++ .+...++..++.... ..+.|+++++||+|+... ...
T Consensus 68 ~~i~v~d~~~~-~~~~~~~~~~~~~~e~~~~~~~i~~~~~--~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
T d1svsa1 68 AIIFCVALSDY-DLVLAEDEEMNRMHESMKLFDSICNNKW--FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTY 144 (195)
T ss_dssp EEEEEEEGGGG-GCBCSSCTTSBHHHHHHHHHHHHHTCGG--GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSH
T ss_pred eeeeEEeeccc-chHHHHhhhhHHHHHHHHHHHHHhcccc--cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccH
Confidence 99999999876 322 344555566655443 378999999999997321 111
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+....+...+... . .......+.+++|||++|+ |+++++.+.+.
T Consensus 145 ~~~~~~~~~~f~~~------------~-------------~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 145 EEAAAYIQCQFEDL------------N-------------KRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp HHHHHHHHHHHHTT------------C-------------SCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------h-------------cccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence 22222222111110 0 0111356788899999999 99999888764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.2e-22 Score=152.00 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------hhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------PKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~~~~ 135 (268)
.||+++|.+|||||||+|+|++.+.. ..+..+..+...........+ ..+.+|||||..... ....
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 75 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRA---IVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTL 75 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC---CCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHH
Confidence 37999999999999999999986542 222222222222222233344 688999999953211 2233
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+..+|++++|+|++++ .... ... +.... ...++++++||+|+......+++.+.+
T Consensus 76 ~~~~~ad~ii~v~d~~~~-~~~~-~~~-~~~~~-------~~~~~i~~~~k~d~~~~~~~~~~~~~~------------- 132 (160)
T d1xzpa2 76 QEIEKADIVLFVLDASSP-LDEE-DRK-ILERI-------KNKRYLVVINKVDVVEKINEEEIKNKL------------- 132 (160)
T ss_dssp HHHHHCSEEEEEEETTSC-CCHH-HHH-HHHHH-------TTSSEEEEEEECSSCCCCCHHHHHHHH-------------
T ss_pred HHHHhCCEEEEEEeCCCC-cchh-hhh-hhhhc-------ccccceeeeeeccccchhhhHHHHHHh-------------
Confidence 446789999999999997 3322 222 22222 567899999999999877655443322
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....+++++||++|+ |++|+++|.+.
T Consensus 133 ------------------------~~~~~~~~vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 133 ------------------------GTDRHMVKISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp ------------------------TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred ------------------------CCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence 112368999999999 99999999764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=8.2e-22 Score=152.54 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=100.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-----------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----------- 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----------- 130 (268)
....+|+++|++|||||||+|+|++.+.. ..+..+.++..........++ ..+.++|+||....
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~---~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~ 80 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERA---LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY 80 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE---EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcc---eeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence 34689999999999999999999987641 111112222222222233444 57889999996532
Q ss_pred -hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHH
Q 024385 131 -RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEID 207 (268)
Q Consensus 131 -~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~ 207 (268)
......+++.+|++++|+|++.+. ......+ ...+.. .+.|+++|+||+|+..... .+++.+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~dvii~v~d~~~~~--~~~~~~~-~~~~~~-----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T d1mkya2 81 SNYRVVDSIEKADVVVIVLDATQGI--TRQDQRM-AGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY 152 (186)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTCC--CHHHHHH-HHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred hhHHHHHHHhcCCEEEEeecccccc--hhhHHHH-HHHHHH-----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhc
Confidence 233445677899999999998862 2333333 333332 6789999999999875432 2222222221100
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ....+++++||++|. +++|+++|.+.+
T Consensus 153 ------------------------------~-~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 153 ------------------------------F-IDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp ------------------------------G-GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------------------c-cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 123478999999999 999999998754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=1.9e-21 Score=151.86 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
++.||+++|+.|||||||++++..+.+. +.+|+ +..... + ....+.+.+||++|++.++..+..+++.++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTi----G~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 70 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTT----GIIEYP--F--DLQSVIFRMVDVGGQRSERRKWIHCFENVT 70 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCC----SCEEEE--E--ECSSCEEEEEECCCSTTGGGGGGGGCSSCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCcee----eEEEEE--E--eccceeeeeccccccccccccccccccccc
Confidence 3579999999999999999999988763 33333 322211 1 122368999999999999999999999999
Q ss_pred EEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 143 GIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 143 ~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
++++|+|.++.. ..+.+....+..++.... ..+.|+++++||+|+..
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~~~v~NK~Dl~~ 126 (200)
T d2bcjq2 71 SIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW--FQNSSVILFLNKKDLLE 126 (200)
T ss_dssp EEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG--GSSSEEEEEEECHHHHH
T ss_pred eeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh--ccCccEEEecchhhhhh
Confidence 999999998741 224455566666665433 27899999999999853
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=8.3e-22 Score=154.51 Aligned_cols=119 Identities=21% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--------Ccccccceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+..+|+++|++++|||||+++|+.. ........+..+ +.+.......+.+++ ..++++|||||.+
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d 79 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD 79 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence 3468999999999999999999632 111001111100 111111112233444 6899999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCC
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 191 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 191 (268)
|.......++.+|++|+|+|+.++. ..+..+.+..+.. .++| +++++||+|+.+
T Consensus 80 f~~~~~~~~~~aD~avlVvda~~Gv--~~qt~~~~~~~~~------~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 80 YIKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHH------TTCCCEEEEEECGGGCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEEecccCC
Confidence 9999999999999999999999982 2333444444433 5665 788899999975
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=7.6e-22 Score=152.37 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=94.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--------------
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------------- 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------------- 131 (268)
.|+++|.+|||||||+|+|++.+...+ ..|+++...... .. ..+.++||||.....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~----~~~g~T~~~~~~----~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~ 71 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRG----KRPGVTRKIIEI----EW--KNHKIIDMPGFGFMMGLPKEVQERIKDEI 71 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSS----SSTTCTTSCEEE----EE--TTEEEEECCCBSCCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee----CCCCEeeccccc----cc--ccceecccCCceeccccccccccccchhh
Confidence 689999999999999999998765322 122222111111 11 246899999963221
Q ss_pred -hhHhhhccCCCEEEEEEeCCCCCC--------CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 132 -PKLDEFLPQAAGIVFVVDALEFLP--------NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 132 -~~~~~~~~~~d~ii~v~d~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
......++.+|++++|+|+..... ........+...+.. .+.|+++|+||+|+... .+...+.+
T Consensus 72 ~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-----~~~p~iiv~NK~D~~~~--~~~~~~~~ 144 (184)
T d2cxxa1 72 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--VQEVINFL 144 (184)
T ss_dssp HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--HHHHHHHH
T ss_pred hhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-----cCCCEEEEEeeeehhhh--HHHHHHHH
Confidence 112345678999999999974300 001111122222322 58899999999998643 33333333
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.++. . +. .....++++||++|+ |++|+++|.+.+|
T Consensus 145 ~~~~~~---~-----------------------~~--~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 145 AEKFEV---P-----------------------LS--EIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp HHHHTC---C-----------------------GG--GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcc---c-----------------------cc--ccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 221110 0 01 223358899999999 9999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=2.7e-21 Score=150.81 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=98.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch----------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------- 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------- 131 (268)
...++|+++|++|||||||+|+|++.+.. ...+..++.+........ . ..+.+.|++|.....
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~--~~~~~~~~~t~~~~~~~~---~--~~~~~~d~~~~~~~~~~~~~~~~~~ 93 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNL--ARTSSKPGKTQTLNFYII---N--DELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEE---T--TTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCce--EEeecccceeeecccccc---c--ccceEEEEEeeccccccccccchhh
Confidence 34568999999999999999999986531 111111111111111111 1 245678887743221
Q ss_pred ---hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 ---PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ---~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
......+..+|++++|+|++.+ +......+...+.. .++|+++|+||+|+......++..+.+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~vi~viD~~~~---~~~~~~~~~~~l~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~- 164 (195)
T d1svia_ 94 RMIETYITTREELKAVVQIVDLRHA---PSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN- 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-
T ss_pred hHHhhhhccccchhhhhhhhhcccc---cccccccccccccc-----ccCcceechhhccccCHHHHHHHHHHHHHHhc-
Confidence 1122445678999999999876 22333334444443 67899999999999766555554444443222
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.....+++++||++|. +++|+++|.+.+.
T Consensus 165 ------------------------------~~~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 165 ------------------------------IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ------------------------------CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ------------------------------ccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 1344589999999999 9999999998764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.3e-21 Score=151.41 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=95.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----chh---hHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----LRP---KLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----~~~---~~~~~ 137 (268)
..|+++|++|||||||+|+|++.+.. +.+..+++...........++ ..+.+|||||+.+ ... .....
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~---~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~ 76 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPK---IADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRH 76 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE---ESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc---eecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHH
Confidence 36999999999999999999886541 222222222221211112233 3689999999521 111 22344
Q ss_pred ccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 138 LPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+..++.++++++...... .....................++|+++|+||+|+.... +..+.+. +.
T Consensus 77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~---~~~~~~~---~~-------- 142 (185)
T d1lnza2 77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAFK---EK-------- 142 (185)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHHH---HH--------
T ss_pred HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH---HHHHHHH---HH--------
Confidence 567899999988765421 12222222222222211122578999999999997531 1111111 11
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+.+++++||++|+ |++|+++|.++++
T Consensus 143 ----------------------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 143 ----------------------LTDDYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp ----------------------CCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ----------------------hccCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence 1234578899999999 9999999998874
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=1.5e-21 Score=152.64 Aligned_cols=115 Identities=24% Similarity=0.365 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..||+++|++|||||||++++. +...+.+| .+..... +...+ ..+.+||++|++.++..+..+++.++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pT----iG~~~~~--~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~ 69 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPT----KGIHEYD--FEIKN--VPFKMVDVGGQRSERKRWFECFDSVT 69 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCC----SSEEEEE--EEETT--EEEEEEEECC-------CTTSCTTCC
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCe----eeeEEEE--Eeeee--eeeeeecccceeeecccccccccccc
Confidence 35699999999999999999994 32223333 3322111 22223 78999999999999999999999999
Q ss_pred EEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 143 GIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 143 ~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
++++++|.++.. ..+.....++..++.... ..++|+++++||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 70 SILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV--FSNVSIILFLNKTDLL 124 (200)
T ss_dssp EEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEECHHHH
T ss_pred eeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChh--hcCceEEEEeccchhh
Confidence 999999998852 224566677777776543 3789999999999985
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.80 E-value=2.1e-19 Score=142.11 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=95.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccc-----eeecc----------------------ccceEEeeccccc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTV-----TSMEP----------------------NEDTFVLHSESTK 112 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~-----~~~~~----------------------~~~~~~~~~~~~~ 112 (268)
+...+|+++|+.++|||||+++|+... ...... .+... +.+...-......
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 345689999999999999999996321 100000 00000 0000000000111
Q ss_pred CCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCC
Q 024385 113 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 191 (268)
Q Consensus 113 ~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 191 (268)
.+ ..+.++|||||.+|.......+..+|++|+|+|+.++. ..+..+.+.-+.. .++| ++++.||+|+..
T Consensus 87 ~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~--~~Qt~e~~~~~~~------~gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 87 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--QTQTRRHSYIASL------LGIKHIVVAINKMDLNG 156 (222)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEEECTTTTT
T ss_pred cc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCc--ccchHHHHHHHHH------cCCCEEEEEEEcccccc
Confidence 22 57999999999999999999999999999999999982 2334444333332 4544 889999999975
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 192 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.. ++..+....++..+.... ..-..+++|+|+||++|+
T Consensus 157 ~~--~~~~~~~~~~l~~~~~~~-----------------------~~~~~~i~~IPiSA~~G~ 194 (222)
T d1zunb3 157 FD--ERVFESIKADYLKFAEGI-----------------------AFKPTTMAFVPMSALKGD 194 (222)
T ss_dssp SC--HHHHHHHHHHHHHHHHTT-----------------------TCCCSEEEEEECCTTTCT
T ss_pred cc--ceehhhhHHHHhhhhHhh-----------------------ccCCCceEEEEEEcccCc
Confidence 43 222233333333221110 001356899999999997
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=2e-19 Score=142.80 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=90.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
+..+||+++|+.|||||||++++..+.+ .+|++..... +..++ +.+.+||++|+..++..+..+++.+
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~------~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~ 71 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK------FQVDK--VNFHMFDVGGQRDERRKWIQCFNDV 71 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEE------EEETT--EEEEEEECCCSTTTTTGGGGGCTTC
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEE------EEECc--EEEEEEecCccceeccchhhhcccc
Confidence 3568999999999999999999976653 2333322111 22334 7899999999999999999999999
Q ss_pred CEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+++++|+|.++.. ..+.+...++..++.+... .++|++|++||+|+..
T Consensus 72 ~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~--~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 72 TAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL--RTISVILFLNKQDLLA 128 (221)
T ss_dssp SEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGG--SSCEEEEEEECHHHHH
T ss_pred cceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhh--CCCcEEEEechhhhhh
Confidence 9999999997531 3356677778888876543 7899999999999854
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.78 E-value=4.9e-19 Score=140.70 Aligned_cols=162 Identities=19% Similarity=0.142 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--ccccc--------------------cee-----eccccceEEeecccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTS-----MEPNEDTFVLHSESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~~~ 115 (268)
+..+|+++|+.++|||||+.+|+... ..... ... ...+............++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~- 80 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 80 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence 35689999999999999999985311 00000 000 000000001111122233
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC-----CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP-----NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.++++|||||.+|.......++.+|++|+|+|+.++.. ...+..+.+.-.... ...++|++.||+|+.
T Consensus 81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-----~~~~iIv~iNK~D~~ 154 (224)
T d1jnya3 81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-----GLDQLIVAVNKMDLT 154 (224)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-----TCTTCEEEEECGGGS
T ss_pred -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-----CCCceEEEEEcccCC
Confidence 689999999999999999999999999999999998611 011222222222221 345689999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.....+...+.+...+..+..... .....++|+++||.+|+
T Consensus 155 ~~~~~~~~~~~v~~~i~~~~~~~~-----------------------~~~~~i~~IPISA~~G~ 195 (224)
T d1jnya3 155 EPPYDEKRYKEIVDQVSKFMRSYG-----------------------FNTNKVRFVPVVAPSGD 195 (224)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTT-----------------------CCCTTCEEEECBTTTTB
T ss_pred CccccHHHHHHHHHHHHhHHHhcC-----------------------CCcccCeEEEEEccCCC
Confidence 654333444444444444322211 11345789999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.5e-18 Score=132.93 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=96.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------Hhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---------LDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---------~~~ 136 (268)
.|+++|.+|||||||+|+|++.+.. ..+..+.+.+........... ..+..+|++|....... ...
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~---~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 81 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---eeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence 5899999999999999999987652 222222222222222222222 35677898886532211 112
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
....+++++++.|..+. ......+...+.. ...|.++|+||+|.... ...+....+...+
T Consensus 82 ~~~~~~~~l~~~d~~~~---~~~~~~~~~~l~~------~~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~--------- 141 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRW---TPDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLAS--------- 141 (179)
T ss_dssp CCCCEEEEEEEEETTCC---CHHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHT---------
T ss_pred chhhcceeEEEEecCcc---chhHHHHHHHhhh------ccCceeeeeeeeeccch--hhhhhhHhhhhhh---------
Confidence 23457788899998875 2333333333332 57789999999998754 2222222221111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+..+++++||++|+ |++|+++|.+++|
T Consensus 142 ----------------------~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 142 ----------------------QMNFLDIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ----------------------TSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ----------------------hcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 1234578999999999 9999999999986
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.77 E-value=9.7e-19 Score=140.46 Aligned_cols=168 Identities=20% Similarity=0.148 Sum_probs=86.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccc---------------------ee--ecc--ccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTV---------------------TS--MEP--NEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~---------------------~~--~~~--~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|+.++|||||+.+|+... ...... .. .+. ..............+
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 101 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 101 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence 345689999999999999999995311 100000 00 000 000000011112222
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC-----CCHHHHHHHHHHHHhcCCccCCCC-cEEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~-piivv~nK~D 188 (268)
..+.++|||||.+|..........+|++++|+|+.++. ....+..+.+.-+.. .++ ++++++||+|
T Consensus 102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~------~~i~~iiv~iNKmD 173 (245)
T d1r5ba3 102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMD 173 (245)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTT
T ss_pred --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH------cCCCeEEEEEEcCC
Confidence 68999999999999999999999999999999999861 000123333322222 344 4889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhH
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l 258 (268)
+......+...+.+..+++......... .....++|+|+||++|+ |.++
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~---------------------~~~~~v~~VPiSA~~G~nI~~~ 223 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGY---------------------NSKTDVKYMPVSAYTGQNVKDR 223 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCC---------------------CHHHHEEEEECBTTTTBTTSSC
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCc---------------------CcccCCEEEEeeccCCCCcccc
Confidence 9865433332222322232221111000 00235799999999998 7654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=2.6e-18 Score=137.28 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc--CCccc--------------------ccce-----eeccccceEEeecccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ--------------------GTVT-----SMEPNEDTFVLHSESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~--------------------~~~~-----~~~~~~~~~~~~~~~~~~~~ 115 (268)
...+|+++|+.++|||||+.+|+. +.... .... ..+.+.+...-...+.+.+
T Consensus 5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~- 83 (239)
T d1f60a3 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 83 (239)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence 346999999999999999999853 11100 0000 0000111110011122233
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC-----CCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
++++++|||||.+|...+...+..+|++|+|+|+.++. ....+..+.+..... .++| +|+++||+|+
T Consensus 84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~------~gv~~iiv~iNKmD~ 156 (239)
T d1f60a3 84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMDS 156 (239)
T ss_dssp -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGGG
T ss_pred -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH------cCCCeEEEEEECCCC
Confidence 68999999999999999999999999999999998751 000123333333322 4555 8889999999
Q ss_pred CCCC
Q 024385 190 VTAH 193 (268)
Q Consensus 190 ~~~~ 193 (268)
....
T Consensus 157 ~~~d 160 (239)
T d1f60a3 157 VKWD 160 (239)
T ss_dssp GTTC
T ss_pred CCCC
Confidence 8644
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.5e-18 Score=140.63 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Cccc-------ccceeeccc-----cceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQ-------GTVTSMEPN-----EDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+.++|+++|+.++|||||+.+++.. .... .+.....+. .+.......+.+++ ..++++|||||.
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~ 82 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV 82 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence 4568999999999999999998532 1100 001111110 00000111233445 689999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+|.......++.+|++|+|+|+.++.+ ......+..... .++|.++++||+|....+ ...+.+.++
T Consensus 83 dF~~e~~~~l~~~D~avlVvda~~Gv~--~~T~~~w~~a~~------~~lP~i~fINKmDr~~ad-~~~~l~ei~ 148 (276)
T d2bv3a2 83 DFTIEVERSMRVLDGAIVVFDSSQGVE--PQSETVWRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQ 148 (276)
T ss_dssp SCSTTHHHHHHHCCEEEEEEETTTSSC--HHHHHHHHHHHT------TTCCEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hhHHHHHHHHHhhhheEEeccccCCcc--hhHHHHHHHHHH------cCCCEEEEEecccccccc-cchhHHHHH
Confidence 999999999999999999999999832 233333443333 799999999999997643 333433333
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.73 E-value=6.6e-18 Score=136.57 Aligned_cols=116 Identities=24% Similarity=0.252 Sum_probs=78.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC--cc------cc-cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS--TH------QG-TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~--~~------~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
++|+++|+.++|||||+.+|+... .. .. +.....+ ..+...-...+.+++ ++++++|||||.+|
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF 80 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF 80 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence 579999999999999999985321 10 00 0000000 000000111233445 68999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.......++.+|++|+|+|+.++. .......+....+ .++|.++++||+|..
T Consensus 81 ~~e~~~al~~~D~avlvvda~~Gv--~~~t~~~~~~~~~------~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 81 VGEIRGALEAADAALVAVSAEAGV--QVGTERAWTVAER------LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEECGGGC
T ss_pred hhhhhhhhcccCceEEEeeccCCc--cchhHHHHHhhhh------ccccccccccccccc
Confidence 999999999999999999999982 2333344444433 689999999999973
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3.6e-17 Score=136.48 Aligned_cols=173 Identities=18% Similarity=0.277 Sum_probs=112.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Ccccc------c----------ceeeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQG------T----------VTSMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~------~----------~~~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
...++|+++|+.++|||||+.+|+.. ..... . -.|+......+.+... ...+++
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 34567999999999999999998621 11000 0 0011111111111110 112344
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~ 192 (268)
.+.++++|||||.+|.......++.+|++|+|+|+.++. ..+....+..... .++|+++|+||+|... .
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv--~~qT~~~~~~a~~------~~~p~i~viNKiDr~~~el~ 166 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV--CVQTETVLRQALG------ERIKPVVVINKVDRALLELQ 166 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS--CHHHHHHHHHHHH------TTCEEEEEEECHHHHHHTSC
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCc--chhHHHHHHHHHH------cCCCeEEEEECcccccccHH
Confidence 578999999999999999999999999999999999982 2344444555544 6899999999999754 4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
..++++.+.+...+..++............. ..|+...+ .++.+||+.|-
T Consensus 167 ~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~----------~~~~P~~g--nV~FaSa~~g~ 216 (341)
T d1n0ua2 167 VSKEDLYQTFARTVESVNVIVSTYADEVLGD----------VQVYPARG--TVAFGSGLHGW 216 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCGGGCC----------CCCCGGGT--CEEEEETTTTE
T ss_pred hhHHHHHHHHcCccccccceeeecccccccc----------cccCcccC--ceEecccccCe
Confidence 5788888888888887765554332211111 11222233 46668999986
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.3e-17 Score=128.19 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=86.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC-CCCchh-------
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG-HSRLRP------- 132 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG-~~~~~~------- 132 (268)
....++|+++|.+|||||||+|+|++.+..... .................+ ......+.++ ......
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLART---SKTPGRTQLINLFEVADG--KRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEETT--EEEEECCCCC------CCHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEee---cccccceeeccceecccc--cceeeeecccccchhhhhhhhhhh
Confidence 356789999999999999999999887642211 111111111111111112 1222222222 111110
Q ss_pred h---HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 133 K---LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 133 ~---~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
. ........+.++.+.|.... .......++..... ...++++++||+|+..........+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~-- 157 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHP--LKDLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVL-- 157 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--
T ss_pred hhhhhhhhhhheeEEEEeeccccc--chhHHHHHHHHhhh------ccccccchhhhhhccCHHHHHHHHHHHHHHHH--
Confidence 0 11122334556666777664 23334444444443 57789999999999764333333323222221
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
......+++++||++|. |++|+++|.+++
T Consensus 158 ----------------------------~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 158 ----------------------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ----------------------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------------------hhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11334689999999999 999999998875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=6.7e-15 Score=126.05 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=69.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc--eeeccccc-eEEeecccccCCceeeEEEEeCCCCCCchhhHhh--
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--TSMEPNED-TFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDE-- 136 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~-- 136 (268)
....+|+++|.+|+|||||+|.|++........ ++..+++. ...+. ..++ ..+.+|||||..........
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~---~~~~--~~~~l~DtPG~~~~~~~~~~~~ 128 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK---HPNI--PNVVFWDLPGIGSTNFPPDTYL 128 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE---CSSC--TTEEEEECCCGGGSSCCHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee---ccCC--CeEEEEeCCCcccccccHHHHH
Confidence 467899999999999999999999854322111 11111111 11111 1122 36889999997654333332
Q ss_pred ---hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 137 ---FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 137 ---~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.+..+|.++++.|..-. ......+..+.. .++|+++|.||+|..
T Consensus 129 ~~~~~~~~d~~l~~~~~~~~----~~d~~l~~~l~~------~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 129 EKMKFYEYDFFIIISATRFK----KNDIDIAKAISM------MKKEFYFVRTKVDSD 175 (400)
T ss_dssp HHTTGGGCSEEEEEESSCCC----HHHHHHHHHHHH------TTCEEEEEECCHHHH
T ss_pred HHhhhhcceEEEEecCCCCC----HHHHHHHHHHHH------cCCCEEEEEeCcccc
Confidence 34568888888764432 222333333333 688999999999964
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.57 E-value=1.1e-15 Score=122.28 Aligned_cols=138 Identities=19% Similarity=0.168 Sum_probs=73.3
Q ss_pred eeEEEEeCCCCCCchhhHhh---hc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDE---FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+.++|+||+.++...... .. ...+++++++|+.............+....... ....|.++|+||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeecccccc
Confidence 46899999999765333221 11 246689999999876332222222222211111 14789999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcccc--ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 192 AHTKEFIRKQMEKEIDKLRASRSAVSE--ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...........+. ++.+......... .+..... ..........++++++||++|+ +++|+++|.++
T Consensus 172 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKM-------CSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHH-------HHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHH-------HHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6544433322211 1111000000000 0000000 0000111345789999999999 99999999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.49 E-value=1.4e-13 Score=111.03 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=74.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-------hH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-------KL 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------~~ 134 (268)
....+|+++|.+|+|||||+|.+++..... .+..+.+++.........+| ..+.++||||..+... ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~---vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i 104 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVS---ISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNII 104 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC---CCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCcee---ecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHH
Confidence 567899999999999999999999876422 11122222222223334455 5799999999753211 11
Q ss_pred hhh--ccCCCEEEEEEeCCCCCCC---HHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 135 DEF--LPQAAGIVFVVDALEFLPN---CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 135 ~~~--~~~~d~ii~v~d~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
..+ ....++++||++.+.. .- .......+..+... ....++++|+||+|....
T Consensus 105 ~~~~~~~~~~~il~v~~~~~~-r~~~~~~~~l~~l~~~fg~----~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 105 KSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK----GIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp HHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECCSCCCG
T ss_pred HHHHhcCCCCeEEEEEECCCC-CCCHHHHHHHHHHHHHcch----hhhhCEEEEEECcccCCc
Confidence 122 2356889999988764 21 12223333333321 124589999999998763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.4e-13 Score=114.27 Aligned_cols=197 Identities=17% Similarity=0.166 Sum_probs=102.4
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCccc---ccceee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSM 97 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~ 97 (268)
.+.+.|+++++....+...-.... ++..+ .....+.++|.|.|+||||||||+++|...-... -.+...
T Consensus 19 ~~~la~~it~vE~~~~~~~~~~~~--ll~~~------~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlav 90 (327)
T d2p67a1 19 RATLAQAMTLVESRHPRHQALSTQ--LLDAI------MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 90 (327)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHH--HHHHH------GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccHHHHHH--HHHHh------hhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecC
Confidence 466777777777665543322111 11111 0113568899999999999999999986321100 012222
Q ss_pred ccccce---------------------EEee--cccccCC--------------ceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 98 EPNEDT---------------------FVLH--SESTKKG--------------KIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 98 ~~~~~~---------------------~~~~--~~~~~~~--------------~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
+|.... +... ..-...+ ..+.+.++.|.|... .-......
T Consensus 91 Dpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq---~e~~i~~~ 167 (327)
T d2p67a1 91 DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ---SETEVARM 167 (327)
T ss_dssp CCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTT---HHHHHHTT
T ss_pred CCceeeeccccccchhHHHHhcccccccccccccccccccchhhhhHHHHHHHhcCCCeEEEeeccccc---cchhhhhc
Confidence 222111 0000 0000000 003456666766532 11245567
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|.+++|.++..+ +..+.....+.++ +=++|+||+|+..........+.+...+..+ ..
T Consensus 168 aD~~l~v~~P~~G-d~iq~~k~gi~e~-----------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~---~~------ 226 (327)
T d2p67a1 168 VDCFISLQIAGGG-DDLQGIKKGLMEV-----------ADLIVINKDDGDNHTNVAIARHMYESALHIL---RR------ 226 (327)
T ss_dssp CSEEEEEECC-------CCCCHHHHHH-----------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHS---CC------
T ss_pred cceEEEEecCCCc-hhhhhhchhhhcc-----------ccEEEEEeecccchHHHHHHHHHHHHHhhhc---cc------
Confidence 8999999998877 4444444444332 3378999999876433333333333222211 00
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..-.-..+++.|||++|+ |++|.+.|.++
T Consensus 227 ----------------~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 227 ----------------KYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp ----------------SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred ----------------CCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 000123489999999999 99999999875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.41 E-value=3.1e-12 Score=105.88 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=104.0
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccccee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGTVTS 96 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~~~~ 96 (268)
.+.+.|+++++....+...-.... ++..+ .....+.++|.|.|+||+|||||+++|... .... .+..
T Consensus 16 ~~~lar~it~~E~~~~~~~~~~~~--~~~~~------~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~v-aVia 86 (323)
T d2qm8a1 16 RAALARAITLAESRRADHRAAVRD--LIDAV------LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV-AVLA 86 (323)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH--HHHHH------GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred HHHHHHHHHHHhCCCchhHHHHHH--HHHHh------hhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCce-eeee
Confidence 467788888887665543322111 11110 112356789999999999999999998642 1100 1111
Q ss_pred eccccc---------------------eEEeecc------------------cccCCceeeEEEEeCCCCCCchhhHhhh
Q 024385 97 MEPNED---------------------TFVLHSE------------------STKKGKIKPVHLVDVPGHSRLRPKLDEF 137 (268)
Q Consensus 97 ~~~~~~---------------------~~~~~~~------------------~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 137 (268)
.+|... .+..... ....| +.+.++.|.|...-.. ..
T Consensus 87 vDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g--~d~iiiETVG~gq~e~---~~ 161 (323)
T d2qm8a1 87 VDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAG--FDVILVETVGVGQSET---AV 161 (323)
T ss_dssp ECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTT--CCEEEEEECSSSSCHH---HH
T ss_pred cccccHHHHhccccchhhHHHHhcccceeeccccccccccchhHHHHHHHHhhccCC--CCeEEEeehhhhhhhh---hh
Confidence 222111 0000000 01112 5677888888654222 23
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
...+|..++|..+..+ +..+..+.-+. ..+=++|+||+|+...... ...+........ ....
T Consensus 162 ~~~~D~~v~v~~p~~G-D~iQ~~k~gil-----------E~aDi~vvNKaD~~~~~~~---~~~~~~~~~~~l---~~~~ 223 (323)
T d2qm8a1 162 ADLTDFFLVLMLPGAG-DELQGIKKGIF-----------ELADMIAVNKADDGDGERR---ASAAASEYRAAL---HILT 223 (323)
T ss_dssp HTTSSEEEEEECSCC-------CCTTHH-----------HHCSEEEEECCSTTCCHHH---HHHHHHHHHHHH---TTBC
T ss_pred hcccceEEEEeeccch-hhhhhhhhhHh-----------hhhheeeEeccccccchHH---HHHHHHHHHHHh---hccc
Confidence 3558999999999987 43443333332 2244899999998654322 122221111100 0000
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
-..-....+++.|||++|+ +++|.++|.++
T Consensus 224 ------------------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 224 ------------------PPSATWTPPVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp ------------------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ------------------ccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 0001223579999999999 99999999876
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.20 E-value=2.5e-11 Score=99.58 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=64.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc---ccccceeeccccceEEeeccc--------ccCC-ceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSES--------TKKG-KIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~i~DtpG~~~ 129 (268)
....+|.++|.||||||||+|++++... .....+|+.|+.+...++... ...+ ....+.++|.||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4678999999999999999999997643 223466778887766544210 0000 014689999998543
Q ss_pred c-------hhhHhhhccCCCEEEEEEeCCC
Q 024385 130 L-------RPKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 ~-------~~~~~~~~~~~d~ii~v~d~~~ 152 (268)
- .......++.||+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2 2456678899999999999976
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.10 E-value=3.7e-10 Score=92.87 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=43.9
Q ss_pred eeEEEEeCCCCCCc-------------hhhHhhhccCCCEEEEEE-eCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEE
Q 024385 117 KPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVV-DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piiv 182 (268)
..+.++||||.... ......|+..++.+++++ ++... ..-.....+...+. ....++++
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~-~~~~~~~~~~~~~~------~~~~r~i~ 203 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD-LANSDALQLAKEVD------PEGKRTIG 203 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC-STTCSHHHHHHHHC------SSCSSEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc-ccccHHHHHHHHhC------cCCCeEEE
Confidence 36889999997532 234567889999866655 54433 22223333333332 14568999
Q ss_pred EeecCCCCCCC
Q 024385 183 CCNKTDKVTAH 193 (268)
Q Consensus 183 v~nK~Dl~~~~ 193 (268)
|+||+|.....
T Consensus 204 Vitk~D~~~~~ 214 (306)
T d1jwyb_ 204 VITKLDLMDKG 214 (306)
T ss_dssp EEECTTSSCSS
T ss_pred EEeccccccch
Confidence 99999997654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.1e-09 Score=89.70 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc-ccccceee-ccccceEEeecc-----cc------------------------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSM-EPNEDTFVLHSE-----ST------------------------ 111 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~-----~~------------------------ 111 (268)
.-++|+|+|.-++|||||+|+|++..+ +.+..++. .++.-.+..... ..
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999875 33221111 111000000000 00
Q ss_pred --------------c-CCceeeEEEEeCCCCCCc-------------hhhHhhhccCCCEEE-EEEeCCCCCCCHHHHHH
Q 024385 112 --------------K-KGKIKPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIV-FVVDALEFLPNCSAASE 162 (268)
Q Consensus 112 --------------~-~~~~~~~~i~DtpG~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~ 162 (268)
. ......+.++||||.... ......|+...+.++ +|.++... -.-.....
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~-~~~~~~~~ 183 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccc-hhhhHHHH
Confidence 0 000135889999996432 133556777787655 55555544 22333444
Q ss_pred HHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 163 YLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 163 ~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
+...+. ....++++|+||+|.....
T Consensus 184 ~~~~~~------~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 184 IAKEVD------PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHC------TTCSSEEEEEECGGGSCTT
T ss_pred HHHHhC------cCCCceeeEEeccccccch
Confidence 444432 2567899999999998653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=3.5e-10 Score=93.61 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=48.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecc---------cccC-------CceeeEEEEeCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE---------STKK-------GKIKPVHLVDVPG 126 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~i~DtpG 126 (268)
.+|.++|.||||||||+|+|++.+...+ ..+|+.|+.+....... .... .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 3799999999999999999998764322 23456665553321110 0000 1114699999999
Q ss_pred CCCch-------hhHhhhccCCCEEEEEEeCCC
Q 024385 127 HSRLR-------PKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 127 ~~~~~-------~~~~~~~~~~d~ii~v~d~~~ 152 (268)
..... ......++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 64321 122345678999999999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.99 E-value=6.4e-10 Score=90.17 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeeccc------ccCCce---eeEEEEeCCCCCCchh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSES------TKKGKI---KPVHLVDVPGHSRLRP 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~i~DtpG~~~~~~ 132 (268)
..+|.++|.||||||||+|++++.+... ...+|+.|+.+...++... .++++. ..+.++|.||...-.+
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 4689999999999999999999776432 2357788888876554210 011111 2588999999764332
Q ss_pred -------hHhhhccCCCEEEEEEeCCC
Q 024385 133 -------KLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 133 -------~~~~~~~~~d~ii~v~d~~~ 152 (268)
..-+.+++||+++.|+|+..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cCCCccHHHHHHHHhccceEEEeeccC
Confidence 35577899999999999854
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=5.5e-08 Score=78.22 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=36.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
....+++++|.||||||||+|+|.+.+. ..++..|++++.... +.. + -.+.++||||..
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~---~~~~~~pG~Tr~~~~--i~~-~--~~~~l~DTPGi~ 168 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI---AKTGDRPGITTSQQW--VKV-G--KELELLDTPGIL 168 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC---C------------CC--EEE-T--TTEEEEECCCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccce---EEECCcccccccceE--EEC-C--CCeEEecCCCcc
Confidence 3568899999999999999999998765 233444444432211 111 2 268999999975
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=4.6e-08 Score=75.66 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+....+++|++|||||||+|+|.++.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 46788999999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.39 E-value=4.2e-08 Score=76.17 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+....+++|++|||||||+|+|.++.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 45678999999999999999998764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=1.1e-06 Score=68.27 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=38.4
Q ss_pred eEEEEeCCCCCCchhhHhhh--------ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 118 PVHLVDVPGHSRLRPKLDEF--------LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
...++.+.|..+........ .-..+++|.|+|+..... .......+...+..+. +|++||+|+
T Consensus 91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~-~~~~~~~~~~Qi~~AD--------~ivlNK~Dl 161 (222)
T d1nija1 91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QMNQFTIAQSQVGYAD--------RILLTKTDV 161 (222)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH-HHHHCHHHHHHHHTCS--------EEEEECTTT
T ss_pred ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhh-hhhhhHHHHHHHHhCC--------ccccccccc
Confidence 45788888876655443221 113578999999988611 1111122333333332 688999999
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
.+.
T Consensus 162 ~~~ 164 (222)
T d1nija1 162 AGE 164 (222)
T ss_dssp CSC
T ss_pred ccH
Confidence 753
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.32 E-value=3.1e-07 Score=73.74 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=57.7
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
......+..+|++|+|+|+..+..+.. ..+..++ .++|+++|+||+|+.+....+.+.+.++
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~---~~l~~~~-------~~Kp~IlVlNK~DLv~~~~~~~w~~~f~-------- 68 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN---PMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFE-------- 68 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC---HHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC---HHHHHHH-------cCCCeEEEEECccCCchHHHHHHHHHHH--------
Confidence 345678899999999999998844332 2333333 4679999999999986533333322222
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.....++.+||+++. +..+.+++.+
T Consensus 69 ----------------------------~~~~~~i~isa~~~~~~~~~~~~~~~ 94 (273)
T d1puja_ 69 ----------------------------NQGIRSLSINSVNGQGLNQIVPASKE 94 (273)
T ss_dssp ----------------------------TTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred ----------------------------hcCCccceeecccCCCccccchhhhh
Confidence 123467889999987 6666665544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=8.7e-07 Score=68.34 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=61.2
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..+.|.+++|+++.++.-+...+..++..... .++|.+||+||+||......+.+. ...+..
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~~~~~----~~~~~~-------- 69 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK------NELETVMVINKMDLYDEDDLRKVR----ELEEIY-------- 69 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHHHHHH----HHHHHH--------
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------cCCCEEEEEeCcccCCHHHHHHHH----Hhhccc--------
Confidence 46789999999988764567777777766654 789999999999997543222221 111111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...++++.+||++|+ +++|.+++..
T Consensus 70 ----------------------~~~~~v~~vSa~~~~g~~~L~~~l~~ 95 (225)
T d1u0la2 70 ----------------------SGLYPIVKTSAKTGMGIEELKEYLKG 95 (225)
T ss_dssp ----------------------TTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred ----------------------ccceeEEEeccccchhHhhHHHHhcC
Confidence 122468899999999 9999988854
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=9.3e-07 Score=68.40 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=59.0
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..+.|.+++|+++.++.-+...+..++..... .+++.+||+||+||..........+.+.+....
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~--------- 72 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN--------- 72 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---------
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH------cCCCEEEEEecccccccHHHHHHHHHHHHHHhh---------
Confidence 46789999999998764567778877766554 788999999999998653322222222211111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
..++++.+||++++ +++|.++|.
T Consensus 73 -----------------------~g~~v~~~Sa~~~~gl~~L~~~l~ 96 (231)
T d1t9ha2 73 -----------------------IGYDVYLTSSKDQDSLADIIPHFQ 96 (231)
T ss_dssp -----------------------HTCCEEECCHHHHTTCTTTGGGGT
T ss_pred -----------------------ccccceeeecCChhHHHHHHHhhc
Confidence 13467888888877 777776654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.16 E-value=1.5e-06 Score=66.40 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.++||||...+... +..+. ...+-+++|+|++...+....+......+ + +--+++
T Consensus 89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~---------~-~~~lI~ 158 (207)
T d1okkd2 89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV---------G-LTGVIV 158 (207)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH---------C-CSEEEE
T ss_pred CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc---------C-CceEEE
Confidence 57899999996554332 11111 23567899999998733333343333222 1 225688
Q ss_pred ecCCCCCC
Q 024385 185 NKTDKVTA 192 (268)
Q Consensus 185 nK~Dl~~~ 192 (268)
+|.|-...
T Consensus 159 TKlDet~~ 166 (207)
T d1okkd2 159 TKLDGTAK 166 (207)
T ss_dssp ECTTSSCC
T ss_pred eccCCCCC
Confidence 99997644
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=2.1e-06 Score=65.76 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.++..|+++|++||||||.+-+|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456678999999999999877763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.93 E-value=7.8e-06 Score=62.32 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCCCchhhHh----hh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||+|......... .+ ....+-+++|+|++.+.+.. ......... -+ .-=++++|.|-.
T Consensus 93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~----~~~~~f~~~-----~~-~~~~I~TKlDe~ 162 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL----SVARAFDEK-----VG-VTGLVLTKLDGD 162 (207)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH----HHHHHHHHH-----TC-CCEEEEECGGGC
T ss_pred CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH----HHHHHHHhh-----CC-CCeeEEeecCcc
Confidence 5789999999665433222 22 23568899999998872222 222222221 11 123788999975
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 163 ~~ 164 (207)
T d1ls1a2 163 AR 164 (207)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=8.6e-06 Score=62.11 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+..|+++|++||||||.+-+|.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999988774
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.90 E-value=5.4e-06 Score=63.32 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=37.4
Q ss_pred eeEEEEeCCCCCCchh------hHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRP------KLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+.+.++||||...+.. ...... -..+-+++|+|++...+......... .. .+. --+++||.|
T Consensus 95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~----~~-----~~~-~~lI~TKlD 164 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN----QA-----SKI-GTIIITKMD 164 (211)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH----HH-----CTT-EEEEEECTT
T ss_pred CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh----cc-----cCc-ceEEEeccc
Confidence 5789999999643321 112221 23567899999998723222222222 11 222 246799999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
....
T Consensus 165 et~~ 168 (211)
T d1j8yf2 165 GTAK 168 (211)
T ss_dssp SCSC
T ss_pred CCCc
Confidence 8543
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=3.7e-05 Score=61.20 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeecc-ccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP-NEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+..-|.++|+.++|||+|+|+|.+..+.-....+..+ +.|.+.... ....+....+.++||.|...
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~-~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCV-PHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEE-ECSSSTTCEEEEEEECCBCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEe-eccCCCCceEEEEecccccc
Confidence 3457899999999999999999987642212222222 234333322 22344446889999999754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.42 E-value=3.5e-05 Score=56.76 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.||+++|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 3799999999999999999876
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.40 E-value=2e-05 Score=59.88 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=29.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+...++.++++|+... ......++..+... .+.+++++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~---~~~~r~~~~~~~~~-----~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNT---TRERRAMIFNFGEQ-----NGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCC---SHHHHHHHHHHHHH-----HTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCc---cHHHHHHHHHHHHh-----cCCeEEEEEeecc
Confidence 3445666788999886 45666666666554 5667788878775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.30 E-value=6.3e-05 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+|+|.|++|||||||+++|..
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.5e-05 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+-++|+|++|||||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.24 E-value=7.5e-05 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++..+|++.|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 35778999999999999999999865
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.20 E-value=8e-05 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++|+++|++||||||+.++|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.08 E-value=0.0051 Score=46.71 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=47.1
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAH 193 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~ 193 (268)
+.+.++|+|+... ......+..+|.++++..... .++....+.+..+.+ .+.|++ +|.||.|.....
T Consensus 112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~--~s~~~~~~~~~~~~~------~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI--SCLTDTMKVGIVLKK------AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH--HHHHHHHHHHHHHHH------TTCEEEEEEEEEETSCTTC
T ss_pred CCEEEEccccccc--ccchhhhhhhhcccccccccc--eecchhhHHHHHHhh------hhhhhhhhhhcccccccch
Confidence 6889999998653 344556778999999998765 345666655544433 567766 899999865443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.04 E-value=0.00016 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-|+++|+|||||||++++|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3788999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.02 E-value=0.00019 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++..+|+++|+|||||||....|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.91 E-value=0.00021 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++..|+++|+|||||||+..+|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.89 E-value=0.00021 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..++..|.++|.+||||||+...|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999888753
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.86 E-value=0.00033 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.+..+|+++|+|||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 357789999999999999999998753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.84 E-value=0.00031 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.+|++.|++||||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.83 E-value=0.00027 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-|++.|++||||||+.++|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00032 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00036 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-+.|+|.+|||||||+++|..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.79 E-value=0.0011 Score=53.72 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+++|+|++|||||||++.|...-.+...+.+++.. .++..... ..+.-+...+...+.......++..-
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~-------~El~l~~~-~~~~~~~~~~~~~~~~ll~~~lR~~p 236 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT-------EEIVFKHH-KNYTQLFFGGNITSADCLKSCLRMRP 236 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS-------CCCCCSSC-SSEEEEECBTTBCHHHHHHHHTTSCC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhcccccceeeccch-------hhhhcccc-cccceeccccchhHHHHHHHHhccCC
Confidence 45579999999999999999998643333333333221 12222221 12334445555566666777776543
Q ss_pred EEEEEEeCCC
Q 024385 143 GIVFVVDALE 152 (268)
Q Consensus 143 ~ii~v~d~~~ 152 (268)
-.|+|=-..+
T Consensus 237 d~iivgEiR~ 246 (323)
T d1g6oa_ 237 DRIILGELRS 246 (323)
T ss_dssp SEEEESCCCS
T ss_pred CcccCCccCc
Confidence 3455544443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00033 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|++|+|||||+..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.00048 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-|+++|.+||||||+..++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999998864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.68 E-value=0.00048 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|+++|+|||||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00049 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-+++|+|++|||||||++.+.+-
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998774
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.00044 Score=50.17 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
++|+++|++||||||+.+.|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999999988774
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.59 E-value=0.0006 Score=50.26 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|+++|+|||||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.00045 Score=51.23 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=21.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+.-|+|.|++|||||||.++|..
T Consensus 19 ~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555688999999999999999853
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.58 E-value=0.00062 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|++|||||||++.+.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcc
Confidence 45668999999999999999988764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.57 E-value=0.00065 Score=49.76 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.-|+|.|++||||||++++|.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.57 E-value=0.00065 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|+|||||||+...|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.0006 Score=50.59 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+++||+||||+||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.55 E-value=0.0006 Score=52.86 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|++|||||||++.+.+-
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999998764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.53 E-value=0.00066 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 355678999999999999999998743
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.00072 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|++|||||||++.+.+-
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 45678999999999999999988764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00084 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|++|||||||++.+.+-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 355679999999999999999887643
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.0007 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|+|||||||...+|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988853
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.50 E-value=0.00066 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-|+++||+|||||||++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999998754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.00086 Score=53.15 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|++|||||||++.+.+--
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 457789999999999999999988643
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.00083 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+|+++|+|||||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.45 E-value=0.00094 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|++.|++||||||+.+.|...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345777899999999999998753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.45 E-value=0.00087 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|++|||||||++.+.+-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCcchhhHhccCC
Confidence 34567999999999999999977764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.43 E-value=0.00079 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.0008 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-|+++||+|+||+||+++|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.42 E-value=0.00088 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|++.|++||||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999988654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.40 E-value=0.0011 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|++|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345679999999999999999988753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00087 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+-++++|++||||||+.+.|..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344578899999999999999865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00087 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|+|||||||...+|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00087 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-|+++||+|||||||+++|...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999999764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.37 E-value=0.00089 Score=48.34 Aligned_cols=20 Identities=45% Similarity=0.659 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
+|+++|++||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999988874
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.00049 Score=50.97 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|.++|.+||||||+.+.|..
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998854
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.019 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+||||++..+..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.00087 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+++|+|||||||+...|..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.31 E-value=0.00071 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|++|||||||++.+.+-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345579999999999999999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0016 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...+++++|++|+|||+++..|..
T Consensus 40 r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 40 RRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCCeEEEecCCcccHHHHHHHHH
Confidence 45677999999999999999988764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.28 E-value=0.0012 Score=49.07 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++...|+++|+|||||||+..+|...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35566899999999999999998653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.27 E-value=0.0013 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.+.++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 355679999999999999999988753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.0011 Score=49.30 Aligned_cols=20 Identities=45% Similarity=0.737 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 024385 67 IVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~ 86 (268)
|+++||+|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.26 E-value=0.0021 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+.+++.||||+||||+++.+..
T Consensus 33 ~~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 33 EVLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHh
Confidence 3456799999999999999998865
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.24 E-value=0.0019 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....++|.|++|+|||||+.++..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCEEEEEcCCCCcHHHHHHHHHH
Confidence 3556789999999999999998864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.22 E-value=0.0008 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-+++++|++|||||||++.+.+-
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhc
Confidence 45678999999999999999987653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.21 E-value=0.001 Score=51.89 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-|++.|+||+|||||+..+...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0014 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.+.++|++|||||||++.+.+-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999998764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.16 E-value=0.0013 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.||||+||||+++.+.+
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0019 Score=50.61 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...+++++|++|+|||+++..|..
T Consensus 36 r~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 36 RRRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCccCCcEEECCCCCcHHHHHHHHHH
Confidence 45678999999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.011 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+.++-|+|.|++||||||+.+.|.
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHH
Confidence 456789999999999999988874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.14 E-value=0.0032 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...+++.|++|+||||+++.+..
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556799999999999999998865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.07 E-value=0.0017 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456679999999999999999998754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.06 E-value=0.0021 Score=48.46 Aligned_cols=28 Identities=43% Similarity=0.628 Sum_probs=23.7
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+..+...|.+.|.|||||||+.+.|..
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456778899999999999999998864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.002 Score=49.70 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.+.++|+.|||||||++.+.+-.
T Consensus 26 ~~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 26 EEGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.03 E-value=0.0016 Score=47.71 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
-|+|.|.+||||||+++.|.
T Consensus 3 iivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999884
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.01 E-value=0.0019 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
..|+++|++||||||+.+.|.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998874
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.97 E-value=0.0012 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 345689999999999999999988743
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0015 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|+.|||||||++.+.+-
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45667999999999999999999873
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0021 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++-|+|.|++|||||||.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998853
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.90 E-value=0.0023 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...++++||||||||.|.+.+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 457799999999999999999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.90 E-value=0.0024 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 35567999999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.81 E-value=0.0019 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++.-|+|-|..||||||+++.|...
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.79 E-value=0.0019 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|+||+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345699999999999999999865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.77 E-value=0.0028 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 345578999999999999999998753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.003 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+++.||+|+||||++..+...
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0055 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+||||+++.+..
T Consensus 34 ~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 34 GNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCchhhHHHHHH
Confidence 4556799999999999999988764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.0041 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||++++.+.+.
T Consensus 40 ~~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 40 RIPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCChhHHHHHHHHH
Confidence 34556999999999999999999853
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0064 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+||||++..+...
T Consensus 33 ~~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 33 GKLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHH
Confidence 34556999999999999999998753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.58 E-value=0.0037 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||++++.+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.57 E-value=0.0039 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+|-||+||||||....|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446788889999999999998854
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.004 Score=47.40 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...+++.|++|+||||+++.+...
T Consensus 31 ~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 31 ANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp TTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHH
Confidence 34456999999999999999988653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.44 E-value=0.015 Score=48.28 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHhhcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 58 ~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...+.--|++.|++||||||.++.++..
T Consensus 152 ~l~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 152 RLIKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 334456777999999999999999998763
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0049 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.||||+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHH
Confidence 456799999999999999999875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.39 E-value=0.0085 Score=42.76 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+..-|++-|+-|+|||||++.+...
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHhh
Confidence 4456889999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.005 Score=47.93 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.||||+|||++++.+...
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceeEEecCCCCCchHHHHHHHHH
Confidence 34567999999999999999998763
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.28 E-value=0.006 Score=44.89 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
.+.-|++.|.+||||||+.+.|....+
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~g~ 28 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSWGY 28 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 356688999999999999998865433
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.12 E-value=0.0074 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.110 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+++.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998653
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.0064 Score=50.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
++...++++||++|||||+++..|.
T Consensus 40 r~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 40 RRTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred cCCCCCCeEECCCCCCHHHHHHHHH
Confidence 4577789999999999999986654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.0069 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+-|+|.|||||||+|+...|..
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999988854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=94.92 E-value=0.042 Score=40.54 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...+++.|++++|||.+++.|..
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 5667899999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.74 E-value=0.0076 Score=44.82 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.67 E-value=0.0085 Score=46.76 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....|++.|++|+|||+|++.+...
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 34567999999999999999998764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.64 E-value=0.0085 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+|+++||+|||||-|.++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999854
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.59 E-value=0.01 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...+++.||||+|||++.+.+.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.012 Score=43.96 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.-|+|-|..||||||+++.|..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588889999999999988753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.013 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+..-|+|-|..||||||++..|.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHH
Confidence 34558888999999999887764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.34 E-value=0.013 Score=42.52 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...-|++.|++|+||||+.-.|.....
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 345699999999999999999876654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0073 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+|-|+.||||||+++.|..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998765
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.015 Score=43.06 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++..-+.+.|++|+|||+|...+...
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.27 E-value=0.015 Score=42.32 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...-|++.|++|+||||+...|.....
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 345689999999999999999887654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=94.22 E-value=0.01 Score=41.47 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=25.0
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+|+ +.+|=... |.....++...+.. .++++++.|=..|-..
T Consensus 78 ~~~dv--I~IDE~QF---f~d~i~~~~~~~~~-----~g~~Viv~GLd~Df~~ 120 (139)
T d2b8ta1 78 DETKV--IGIDEVQF---FDDRICEVANILAE-----NGFVVIISGLDKNFKG 120 (139)
T ss_dssp TTCCE--EEECSGGG---SCTHHHHHHHHHHH-----TTCEEEEECCSBCTTS
T ss_pred cCcCE--EEechhhh---cchhHHHHHHHHHh-----cCceEEEEEecccccc
Confidence 34553 44554443 44433344444432 6889999999988654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.16 E-value=0.0072 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+.+-|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45579999999999999998864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.014 Score=45.94 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=19.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
++++-|.|.|.+|||||||...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 345678899999999999987763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.017 Score=43.69 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++..-+++.|++|+|||+|...+...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46778999999999999999998754
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.76 E-value=0.019 Score=46.91 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+..+++++||+|||||-|.++|.
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHH
Confidence 356789999999999999999875
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.73 E-value=0.13 Score=38.21 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
+.+.++|+|+... ......+..+|.+++|.+.... ++......+..... .+.+ +-+++||.+-
T Consensus 110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~--~~~~~~~~~~~~~~------~~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEIS--SITDGLKTKIVAER------LGTKVLGVVVNRITT 173 (232)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHH--HHHHHHHHHHHHHH------HTCEEEEEEEEEECT
T ss_pred cceeeeccccccc--chhHHHhhhhheeeeecccccc--chhhhhhhhhhhhh------ccccccccccccccc
Confidence 5678999998653 3444556679999999887653 34444444333322 2334 4478999864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.62 E-value=0.022 Score=41.10 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...-|++.|++|+||||+.-.+.....
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 455699999999999999988876543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.022 Score=42.49 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
+-|+++|..||||||..+.|....+
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G~ 28 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLGI 28 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEECCCcCCHHHHHHHHHHCCC
Confidence 4688999999999999998865544
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.44 E-value=0.026 Score=41.93 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+-|++.|..||||||+.+.|....
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~G 26 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDLG 26 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
Confidence 458899999999999999886543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.44 E-value=0.021 Score=43.48 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-++|.|+||+|||+|..++...
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.38 E-value=0.011 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
....++++|++|+|||+|++++.
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHH
T ss_pred CCCeEEEECCCCccHHHHHHHHH
Confidence 34689999999999999999885
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.053 Score=40.28 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++.|++|+||||++..+..
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45599999999999999997654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.0051 Score=45.27 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 024385 67 IVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~ 85 (268)
.+|+|+.||||||++.++.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999999973
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.15 E-value=0.031 Score=43.64 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+|.|.+|+|||||+..+.+
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999998764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.025 Score=45.17 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++||+|||||.|...|..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 699999999999999998753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.06 Score=40.85 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++.|++|+||||++..+..
T Consensus 34 ~~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 34 HHAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeeEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999988653
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.1 Score=35.73 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=27.5
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.+...|+ +.+|=... +.++..+...+.. .+++|++.|=..|=..
T Consensus 70 ~~~~~d~--I~IDEaQF---f~dl~~~~~~~~~------~~~~Viv~GLd~Df~~ 113 (133)
T d1xbta1 70 EALGVAV--IGIDEGQF---FPDIVEFCEAMAN------AGKTVIVAALDGTFQR 113 (133)
T ss_dssp HHHTCSE--EEESSGGG---CTTHHHHHHHHHH------TTCEEEEECCSBCTTS
T ss_pred hhcccce--EEeehhHH---HHHHHHHHHHHHh------cCCcEEEEEecccccc
Confidence 4455663 44555444 5556555555544 6889999998888643
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.07 E-value=0.031 Score=42.34 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++..-+++.|+||+|||+|+.++...
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46678999999999999999888654
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.91 E-value=0.2 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.-=+++|+-.|||||-+-+..
T Consensus 8 ~l~lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 8 WVEVIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeccccHHHHHHHHHH
Confidence 334779999999999665543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.031 Score=42.40 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.-|+|=|..||||||+++.|..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999874
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.012 Score=45.80 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-+.+.|++++|||+|.-.+...
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHH
Confidence 45678999999999999999887653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.037 Score=41.39 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++.-|++-|..||||||+++.|..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHH
Confidence 455689999999999999988753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.61 E-value=0.092 Score=40.68 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-..+.|++++|||+|...+..
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCceEEEEecCCccchHHHHHHHHH
Confidence 4566789999999999999988754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.53 E-value=0.033 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+++.|+||+|||.|.+.+..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 355579999999999999865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.47 E-value=0.022 Score=44.89 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.0
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l 84 (268)
--+++|+.||||||++.++
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4589999999999999887
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.041 Score=41.75 Aligned_cols=26 Identities=23% Similarity=0.041 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++..-++|.|++|+|||+|..++...
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998753
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.04 Score=37.05 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.1
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+.+..+.|.+.|.+|+|||++.+.|.
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CCccceEEEEeCCCCCCHHHHHHHHH
Confidence 45678999999999999999999885
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.14 E-value=0.049 Score=40.71 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
++..-++|.|++|+|||+|...+.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 467789999999999999987764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.12 E-value=0.042 Score=41.40 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+...-++|.|++|+|||+|...+...-
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999987543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.52 E-value=0.049 Score=40.75 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.+.|++|+|||-|++.+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999998764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.11 E-value=0.045 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-..+.|++++|||+|+-.+..
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred ccceeEEEecCCCcHHHHHHHHHHH
Confidence 4567789999999999999877654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.052 Score=44.51 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 024385 67 IVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~ 85 (268)
-+|+|+.|+|||+++.++.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999973
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.72 E-value=0.068 Score=40.38 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|..||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999854
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.63 E-value=0.088 Score=40.65 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+.--+++.|+||+|||+|+..+.
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45568999999999999987765
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=90.62 E-value=0.15 Score=36.86 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeecc
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP 99 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~ 99 (268)
++|+|...||||.+..++....-...++.|..+
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~~ 34 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEccCC
Confidence 689999999999999998765444444554433
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.32 E-value=0.093 Score=40.62 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999998765
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.97 E-value=0.093 Score=42.01 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+|.|=|.-|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 458999999999999999998753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.085 Score=40.58 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
..-.++.|++|+|||+|+-.+.
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4567899999999999998764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.087 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++|+|.+|+|||+++..++.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHH
Confidence 345799999999999999877654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.28 E-value=0.079 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+|.|=|.-|+||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.05 E-value=0.091 Score=41.95 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+|.|=|.-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.73 E-value=0.076 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLF 81 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi 81 (268)
...++|.|.+|+||||.+
T Consensus 14 ~~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SSEEEECCCTTSCHHHHH
T ss_pred CCCEEEEeeCCccHHHHH
Confidence 345899999999999754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.30 E-value=0.11 Score=41.17 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++|+|||.+.+.|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578999999999999988753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.10 E-value=0.16 Score=39.79 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLF 81 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi 81 (268)
.-.++|.|.+|+||||.+
T Consensus 24 ~g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEecCCccHHHHH
Confidence 345899999999999754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.43 E-value=0.19 Score=39.19 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-+++|+|++|+|||+|+..+..+
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 57889999999999999999888753
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.2 Score=40.46 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQ 83 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~ 83 (268)
...-++|.|++|+|||+++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 345789999999999998754
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=85.12 E-value=0.25 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.057 Sum_probs=40.1
Q ss_pred eeEEEEeCCCCCCchh-hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRP-KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~nK~Dl~~ 191 (268)
+.+.++|||+...... ........+|.+++++++.. .++......+..+..... ..+.++ -++.|+.+...
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~--~sl~~~~~~~~~i~~~~~--~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM--MALYAANNISKGIQKYAK--SGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH--HHHHHHHHHHHHHHHHBT--TBBCEEEEEEEECCSSSC
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccchhh--hHHHHHHHHHHHHHhhcc--ccceeccceEEeeecCCC
Confidence 6789999987543222 22233455888888887754 345544444443332211 133333 37889988654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.20 E-value=0.49 Score=34.52 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
......+++.|++|+|||++...+..
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999988764
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.84 E-value=0.48 Score=35.89 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+|.|++|+||+.+.+.+-.
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHH
Confidence 3455699999999999999988754
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.63 E-value=0.53 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l 84 (268)
..-+++.|+..+||||+++.+
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHH
Confidence 345789999999999999986
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.27 E-value=0.5 Score=36.30 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l 84 (268)
...+-+++.|-.|+||||+.-.+
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCcChHHHHHHHH
Confidence 34556788999999999976554
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.02 E-value=0.65 Score=35.40 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=16.4
Q ss_pred cCCCe-EEEEcCCCCcHHHHHHHH
Q 024385 62 KKSTT-IVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 62 ~~~~~-i~ivG~~~~GKSsLi~~l 84 (268)
+..++ |++.|-.|+||||+.-.|
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHH
Confidence 34555 555699999999975544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.38 E-value=0.37 Score=32.47 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++.+++|+|||+++-.+..
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4568899999999998866543
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=80.21 E-value=0.49 Score=36.47 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=37.2
Q ss_pred eeEEEEeCCCCCCchhhH-hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~-~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~ 190 (268)
+.+.++|||+........ ......++.++++..... .++......+..+..... ..+.++. +|.|+.+..
T Consensus 119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~~--~s~~~~~~~~~~i~~~~~--~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEM--MAMYAANNISKGIVKYAN--SGSVRLGGLICNSRNTD 190 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSH--HHHHHHHHHHHHHHHHHT--TSCCEEEEEEEECCCCT
T ss_pred CCeEeeccCCccCHHHHHHHHHhhccceeecccchhH--HHHHHHHHHHHHHHhhhh--cccccccceeehhhcch
Confidence 678899998765322222 222345677777765544 234444444444332211 1344543 788987743
|