Citrus Sinensis ID: 024389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEcccccccccccEEEcccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MPRSFASLfsrkksqtlAFKDYYTNWFNTLQKTLLPLIhkslsssssqtLLYSHVDLLLHHFLSYYDaldsaatqgnlpellypswrnslevpflflgdlhpylFTNLVRSfldeeseeeeeeddddsldnrpWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRdrevlgelnrskipis
Flexible Loop (DISEMBL)
mprsfaslfsrkksqtlaFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEeeeeeddddsldnrPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAedwvaferqsDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRdrevlgelnrskipis
Low Complexity Region (SEG)
MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTllplihkslsssssqtllysHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFldeeseeeeeeddddsldNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS
Disordered region (IsUnstruct)
***************TLAFKDYYTNWFNTLQKTLLPLIHKSLS***SQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSF********************PWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSD*ELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLG**********
Disordered Region (DISOPRED)
********************DYYTNWFNTLQKTL*******************HVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLD********************************************************************************************MDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREV************
Disordered Region (DISEMBL)
*********SRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFL****************DNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS
Disordered Region (DISPRO)
****FASLFS*KKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDE**********DDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSD*ELKGVIGE***EEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
255577837	274	conserved hypothetical protein [Ricinus	0.985	0.963	0.6	9e-82
147819737	338	hypothetical protein VITISV_000736 [Viti	0.958	0.760	0.547	5e-75
359496014	361	PREDICTED: uncharacterized protein LOC10	0.951	0.706	0.543	3e-74
224125160	282	predicted protein [Populus trichocarpa]	0.981	0.932	0.6	9e-71
15235715	273	uncharacterized protein [Arabidopsis tha	0.977	0.959	0.5	1e-66
116830599	274	unknown [Arabidopsis thaliana]	0.977	0.956	0.5	1e-66
297799748	272	hypothetical protein ARALYDRAFT_914352 [	0.973	0.959	0.503	7e-66
356558451	486	PREDICTED: uncharacterized protein LOC10	0.981	0.541	0.475	2e-62
115447733	232	Os02g0661300 [Oryza sativa Japonica Grou	0.589	0.681	0.317	4e-20
125540574	212	hypothetical protein OsI_08361 [Oryza sa	0.589	0.745	0.317	5e-20

>gi|255577837|ref|XP_002529792.1| conserved hypothetical protein [Ricinus communis] gi|223530736|gb|EEF32606.1| conserved hypothetical protein [Ricinus communis]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 162/270 (60%), Positives = 211/270 (78%), Gaps = 6/270 (2%)

Query: 1   MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLH 60
           MP  F+     K+  T+ FK+YYT+WFNTL+  LLPL+H++L S SS  LL SH +LLLH
Sbjct: 1   MPNPFSIFSISKRPSTIPFKEYYTDWFNTLKNPLLPLLHQTLCSPSSPALLSSHFNLLLH 60

Query: 61  HFLSYYDALDSAATQ--GNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESE 118
           H LSYYD+LD A T    NLP LL+PSW+NSLE PFLFLGDLHPY FTNL+RSFLD+E+ 
Sbjct: 61  HLLSYYDSLDLAVTTDPNNLPYLLFPSWKNSLEKPFLFLGDLHPYTFTNLIRSFLDQENN 120

Query: 119 EEEEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
            ++E   D   D RPW V+MAW++  +NL+++IEQIECGLRL+VPAL+ R K+ Q+GFVG
Sbjct: 121 SDDENIRDVVFD-RPWPVIMAWKDPSRNLINKIEQIECGLRLIVPALMDRYKRAQAGFVG 179

Query: 179 RIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAA 238
           R+AEDWVAF+ + +   K  I EAMK EM+++VSVF+DANRLR+SVI++IVGAL++YQ A
Sbjct: 180 RLAEDWVAFDGKKE---KVEIREAMKVEMEELVSVFIDANRLRRSVISDIVGALNLYQGA 236

Query: 239 LFLEGLAQFLVGLRDREVLGELNRSKIPIS 268
           +F+EGLAQFLVG ++ ++L E  + KIPIS
Sbjct: 237 VFVEGLAQFLVGFKEPDLLREFEKCKIPIS 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819737|emb|CAN67303.1| hypothetical protein VITISV_000736 [Vitis vinifera]

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/265 (54%), Positives = 192/265 (72%), Gaps = 8/265 (3%)

Query: 8   LFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYD 67
           LFSRKK+    FKDYY  W + L  TLLPL+ +++ SSS   L  +HV+++ HHF +YY+
Sbjct: 78  LFSRKKA-CRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSNL-STHVEMVHHHFQAYYE 135

Query: 68  ALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE----EEE 123
           ALD AA+  ++ +LLYP WRNSLE PFL+LGD HPYLFTNL+RSFLD+  +++     E 
Sbjct: 136 ALDLAASN-DVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEV 194

Query: 124 DDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAED 183
            +  S  + PWQ+LMAW+N  + LM++IEQIEC LRLMVPAL+ R++  Q G   R+A D
Sbjct: 195 GETCSFCDTPWQILMAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVATD 254

Query: 184 WVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEG 243
           W  F+ +  E  K VIG+A+  +MD+M+ VF+DANRLRKSV+AEI+G  +VYQAALFLEG
Sbjct: 255 WGLFQGKR-EGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEG 313

Query: 244 LAQFLVGLRDREVLGELNRSKIPIS 268
           LAQF VG RD E+L E  R  +PI+
Sbjct: 314 LAQFFVGFRDHELLSEFERCTVPIN 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496014|ref|XP_002264730.2| PREDICTED: uncharacterized protein LOC100250621 [Vitis vinifera]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 143/263 (54%), Positives = 190/263 (72%), Gaps = 8/263 (3%)

Query: 10  SRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDAL 69
           SRKK+    FKDYY  W + L  TLLPL+ +++ SSS   L  +HV+++ HHF +YY+AL
Sbjct: 103 SRKKA-CRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSNL-STHVEMVHHHFQAYYEAL 160

Query: 70  DSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE----EEEDD 125
           D AA+  ++ +LLYP WRNSLE PFL+LGD HPYLFTNL+RSFLD+  +++     E  +
Sbjct: 161 DLAASN-DVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEVGE 219

Query: 126 DDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWV 185
             S  + PWQ+LMAW+N  + LM++IEQIEC LRLMVPAL+ R++  Q G   R+A DW 
Sbjct: 220 TCSFCDTPWQILMAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVATDWG 279

Query: 186 AFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLA 245
            F+ +  E  K VIG+A+  +MD+M+ VF+DANRLRKSV+AEI+G  +VYQAALFLEGLA
Sbjct: 280 LFQGKR-EGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEGLA 338

Query: 246 QFLVGLRDREVLGELNRSKIPIS 268
           QF VG RD E+L E  R  +PI+
Sbjct: 339 QFFVGFRDHELLSEFERCTVPIN 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125160|ref|XP_002329908.1| predicted protein [Populus trichocarpa] gi|222871145|gb|EEF08276.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 165/275 (60%), Positives = 202/275 (73%), Gaps = 12/275 (4%)

Query: 1   MPRSFASLFSRK---KSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDL 57
           MP  F S+FSR    K   + FKDYYTNWFNTL+ TLLPL+H SLSSS S   L S    
Sbjct: 1   MPSPF-SIFSRSNTTKQTPIPFKDYYTNWFNTLKNTLLPLLHHSLSSSPSSPTLLSSHLH 59

Query: 58  LLHHFLS-YYDALDSAATQG--NLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLD 114
           L+ H L  YY++LD AAT    NLP LLYPSWRN LE PFLFLGDLHPY+FTNL+RSFLD
Sbjct: 60  LILHHLLSYYESLDLAATTNTKNLPYLLYPSWRNPLETPFLFLGDLHPYVFTNLLRSFLD 119

Query: 115 E-ESEEEEEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQ 173
           E +S+E+ E D    + +RP  V+MAW++  K+LM +IEQIE GLRLMVPAL+ R+K  Q
Sbjct: 120 EADSDEDTENDRKIFVFDRPCHVVMAWKDPSKHLMIKIEQIERGLRLMVPALLDRVKTAQ 179

Query: 174 SGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALS 233
           SGF G+IAE+WV  ER+     K  + EAMK EM+++V+VF+ ANRLR+SVI++IV AL+
Sbjct: 180 SGFAGKIAEEWVNCERKE----KMDVSEAMKAEMEELVTVFLHANRLRRSVISDIVAALN 235

Query: 234 VYQAALFLEGLAQFLVGLRDREVLGELNRSKIPIS 268
           VYQ ALFLEGLAQFLVG +D+ +L E  R K PIS
Sbjct: 236 VYQGALFLEGLAQFLVGFQDKNLLREFERCKTPIS 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235715|ref|NP_193991.1| uncharacterized protein [Arabidopsis thaliana] gi|3892715|emb|CAA22165.1| hypothetical protein [Arabidopsis thaliana] gi|7269106|emb|CAB79215.1| hypothetical protein [Arabidopsis thaliana] gi|93007376|gb|ABE97191.1| hypothetical protein At4g22600 [Arabidopsis thaliana] gi|332659229|gb|AEE84629.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/276 (50%), Positives = 195/276 (70%), Gaps = 14/276 (5%)

Query: 1   MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLH 60
           MP SF   FSRKK  +  F D+Y +W  TL +  LPL+ +SLSS++S ++L S+VDL+L 
Sbjct: 1   MPFSF---FSRKKP-SRRFNDFYEDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLR 56

Query: 61  HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           H + YY+ LD AA    +P LL+PSWRNSLE PFLFLGD+HPYL TNL+RSF+D E+++ 
Sbjct: 57  HLVLYYETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDS 116

Query: 121 EEEDDDDSLD--NRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
           ++ED++ SLD  N+P ++ MAW++    L+ +I+QIEC +RLMVP L+ R++K Q  FV 
Sbjct: 117 DDEDEETSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVA 176

Query: 179 RIAEDWV-AFERQSDEELKGVIG-------EAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
           R++E WV +++    ++L   +        EA K EM+++VS+FVDANRLRKSVI +IVG
Sbjct: 177 RVSESWVSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVG 236

Query: 231 ALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP 266
           A S +QAALFLEGL QFL G +D+ +L +     +P
Sbjct: 237 ATSEHQAALFLEGLCQFLAGFKDQILLQDFEILSLP 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830599|gb|ABK28257.1| unknown [Arabidopsis thaliana]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/276 (50%), Positives = 195/276 (70%), Gaps = 14/276 (5%)

Query: 1   MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLH 60
           MP SF   FSRKK  +  F D+Y +W  TL +  LPL+ +SLSS++S ++L S+VDL+L 
Sbjct: 1   MPFSF---FSRKKP-SRRFNDFYEDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLR 56

Query: 61  HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           H + YY+ LD AA    +P LL+PSWRNSLE PFLFLGD+HPYL TNL+RSF+D E+++ 
Sbjct: 57  HLVLYYETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDS 116

Query: 121 EEEDDDDSLD--NRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
           ++ED++ SLD  N+P ++ MAW++    L+ +I+QIEC +RLMVP L+ R++K Q  FV 
Sbjct: 117 DDEDEETSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVA 176

Query: 179 RIAEDWV-AFERQSDEELKGVIG-------EAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
           R++E WV +++    ++L   +        EA K EM+++VS+FVDANRLRKSVI +IVG
Sbjct: 177 RVSESWVSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVG 236

Query: 231 ALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP 266
           A S +QAALFLEGL QFL G +D+ +L +     +P
Sbjct: 237 ATSEHQAALFLEGLCQFLAGFKDQILLQDFEILSLP 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799748|ref|XP_002867758.1| hypothetical protein ARALYDRAFT_914352 [Arabidopsis lyrata subsp. lyrata] gi|297313594|gb|EFH44017.1| hypothetical protein ARALYDRAFT_914352 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 139/276 (50%), Positives = 195/276 (70%), Gaps = 15/276 (5%)

Query: 1   MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLH 60
           MP SF   FSRKK  +  F D+Y +W  TL +  LPL+ +SLSS++S ++L S+VDL+L 
Sbjct: 1   MPFSF---FSRKKP-SRRFNDFYDDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLR 56

Query: 61  HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           H + YY+ LD AA    +P LL+PSWRNSLE PFLFLGD+HPYL TNL+RSF+D E+ ++
Sbjct: 57  HLVLYYETLDLAADPNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDREN-QD 115

Query: 121 EEEDDDDSLD--NRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
            +EDD+ SLD  N+P ++  AW++    L+ +I+QIEC +RLMVP L+ R++K Q  FV 
Sbjct: 116 SDEDDETSLDLMNQPLKMTTAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKAQRSFVA 175

Query: 179 RIAEDWV-AFERQSDEELKGV-------IGEAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
           R++E+WV +++    ++L          + EA KEEM+++VS+FVDANRLRKSVI +IVG
Sbjct: 176 RVSENWVLSYQAGKKKKLPATAVVASTSVDEAAKEEMEELVSIFVDANRLRKSVIMDIVG 235

Query: 231 ALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP 266
           A S +QAALFLEGL QFL G +D+ +L +     +P
Sbjct: 236 ATSEHQAALFLEGLCQFLAGFKDQVLLQDFEILALP 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558451|ref|XP_003547520.1| PREDICTED: uncharacterized protein LOC100799625 [Glycine max]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/290 (47%), Positives = 188/290 (64%), Gaps = 27/290 (9%)

Query: 1   MPRSFASLFSR-KKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLL 59
           M ++ A LFSR  K Q+ +FK+YY  WFNTL+   LPL+  S+S  S  T+L +HV++L 
Sbjct: 1   MLKAVAPLFSRSHKQQSRSFKEYYAEWFNTLKNNHLPLLRHSISGDS-LTILSTHVEMLH 59

Query: 60  HHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEE 119
            HF SYY ALD+AAT  +  +LL   WRNSLE P L+LGDLHP LFTNL RSFL +E   
Sbjct: 60  QHFQSYYHALDAAAT-SDASQLLSQEWRNSLEKPLLWLGDLHPSLFTNLARSFLQDEHSP 118

Query: 120 EEEEDDDD-------------SLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALI 166
           +  +D+DD              L  RPWQV MAWRN  + L ++++QIECGLR++VPAL 
Sbjct: 119 DHTDDEDDSDPHHHHHHHHHFPLPERPWQVAMAWRNPSEALTARMDQIECGLRVIVPALS 178

Query: 167 GRIKKVQSGFVGRIAEDWVAFERQSDEELKG-------VIGEAMKEEMDDMVSVFVDANR 219
            R+K  +  FVGR+  +W    R  D   KG        +G  +K  M+++VSVF+ ANR
Sbjct: 179 DRLKHAEDAFVGRVMGNWF---RCRDHHHKGSGASSKVAVGADVKAHMEELVSVFLYANR 235

Query: 220 LRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSK-IPIS 268
           LR++V+ +I+ A +VYQAALFLEGLAQFL+G RD E++  +   K +P++
Sbjct: 236 LRRNVLVDILSATTVYQAALFLEGLAQFLIGFRDHELVNAVEHCKALPLA 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115447733|ref|NP_001047646.1| Os02g0661300 [Oryza sativa Japonica Group] gi|49388500|dbj|BAD25624.1| unknown protein [Oryza sativa Japonica Group] gi|49388642|dbj|BAD25755.1| unknown protein [Oryza sativa Japonica Group] gi|113537177|dbj|BAF09560.1| Os02g0661300 [Oryza sativa Japonica Group] gi|215741247|dbj|BAG97742.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 47/205 (22%)

Query: 61  HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           HF +++ ALD+AA Q     +    WR+ LE+PFL++GDLHP L T+L+RS         
Sbjct: 69  HFQAHWSALDAAARQDPAQAVSAGDWRSPLELPFLWVGDLHPSLVTSLLRSL-------- 120

Query: 121 EEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRI 180
                                +    L++  ++++  +R  VP++  R+++VQ  F+   
Sbjct: 121 ---------------------SPSPRLLAATDRVDRRIRAAVPSISDRLRRVQEAFIS-- 157

Query: 181 AEDWVAFERQSDEELKGVIG-EAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAAL 239
                        E+ G    EA  EE+ D   V +DANRLR+ V++E+V A   YQAAL
Sbjct: 158 ------------AEVSGAADVEAFLEELKD---VALDANRLRRGVLSELVAAAGGYQAAL 202

Query: 240 FLEGLAQFLVGLRDREVLGELNRSK 264
           FLE L++F++ + D EVL   ++ +
Sbjct: 203 FLEALSRFVLSMHDPEVLRRFDQCR 227

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125540574|gb|EAY86969.1| hypothetical protein OsI_08361 [Oryza sativa Indica Group]

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 47/205 (22%)

Query: 61  HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           HF +++ ALD+AA Q     +    WR+ LE+PFL++GDLHP L T+L+RS         
Sbjct: 49  HFQAHWSALDAAARQDPAQAVSAGDWRSPLELPFLWVGDLHPSLVTSLLRSL-------- 100

Query: 121 EEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRI 180
                                +    L++  ++++  +R  VP++  R+++VQ  F+   
Sbjct: 101 ---------------------SPSPRLLAATDRVDRRIRAAVPSISDRLRRVQEAFIS-- 137

Query: 181 AEDWVAFERQSDEELKGVIG-EAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAAL 239
                        E+ G    EA  EE+ D   V +DANRLR+ V++E+V A   YQAAL
Sbjct: 138 ------------AEVSGAADVEAFLEELKD---VALDANRLRRGVLSELVAAAGGYQAAL 182

Query: 240 FLEGLAQFLVGLRDREVLGELNRSK 264
           FLE L++F++ + D EVL   ++ +
Sbjct: 183 FLEALSRFVLSMHDPEVLRRFDQCR 207

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2127525	273	INP1 "AT4G22600" [Arabidopsis	0.977	0.959	0.438	9.9e-55

TAIR|locus:2127525 INP1 "AT4G22600" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 121/276 (43%), Positives = 163/276 (59%)

Query:     1 MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTXXXXXXXXXXXXXXXXXXXXHVDLLLH 60
             MP SF   FSRKK     F D+Y +W  TL +                     +VDL+L 
Sbjct:     1 MPFSF---FSRKKPSR-RFNDFYEDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLR 56

Query:    61 HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFXXXXXXXX 120
             H + YY+ LD AA    +P LL+PSWRNSLE PFLFLGD+HPYL TNL+RSF        
Sbjct:    57 HLVLYYETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDS 116

Query:   121 XXXXXXXXXX--NRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
                         N+P ++ MAW++    L+ +I+QIEC +RLMVP L+ R++K Q  FV 
Sbjct:   117 DDEDEETSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVA 176

Query:   179 RIAEDWVA-FERQSDEELKGVIG-------EAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
             R++E WV+ ++    ++L   +        EA K EM+++VS+FVDANRLRKSVI +IVG
Sbjct:   177 RVSESWVSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVG 236

Query:   231 ALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP 266
             A S +QAALFLEGL QFL G +D+ +L +     +P
Sbjct:   237 ATSEHQAALFLEGLCQFLAGFKDQILLQDFEILSLP 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      268       230   0.00083  113 3  11 22  0.49    32
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  181 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.05u 0.20s 19.25t   Elapsed:  00:00:01
  Total cpu time:  19.05u 0.20s 19.25t   Elapsed:  00:00:01
  Start:  Fri May 10 04:04:25 2013   End:  Fri May 10 04:04:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010584 "pollen exine formation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01270053 hypothetical protein (282 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam14144	79	pfam14144, DOG1, Seed dormancy control	2e-18

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score = 77.2 bits (191), Expect = 2e-18
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 33  TLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEV 92
            LL  +  +L++ +S   L S VD +L H+  Y+    +AA   ++  LL   W+   E 
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKA-DVFHLLSGMWKTPAER 59

Query: 93  PFLFLGDLHPYLFTNLVRSF 112
            FL++G   P     L+ S 
Sbjct: 60  CFLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF14144	80	DOG1: Seed dormancy control	100.0
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	97.02
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	96.95
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.23
PRK10455	161	periplasmic protein; Reviewed	95.0
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	94.03
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	93.45
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	93.08

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=1e-34  Score=223.14  Aligned_cols=80  Identities=33%  Similarity=0.472  Sum_probs=76.5

Q ss_pred             hchhhHHhccccCCCChhhHHHHHHHHHHhHHHHHHhhhhhhhcCCcccccCCCCCCchhhHHHhhcCCCchhHHHHHHh
Q 024389           32 KTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRS  111 (268)
Q Consensus        32 ~~l~eLr~a~~~~~~sd~~L~~LV~~~l~Hy~~yy~~K~~aA~~~DV~~l~sp~W~splEr~fLWiGG~RPS~ll~Ll~s  111 (268)
                      |++.|||++++++..+|.+|+.||+++++||++||+.|+.||+ +|||++|+|+|+||+||||+||||||||++|+|||+
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~-~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s   79 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAK-ADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYS   79 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence            5789999999888558999999999999999999999999999 999999999999999999999999999999999997


Q ss_pred             h
Q 024389          112 F  112 (268)
Q Consensus       112 ~  112 (268)
                      +
T Consensus        80 ~   80 (80)
T PF14144_consen   80 Q   80 (80)
T ss_pred             C
Confidence            4

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=97.02  E-value=0.0088  Score=46.59  Aligned_cols=84  Identities=14%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLR  221 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~LR  221 (268)
                      +||++|..+|..+.......-..+-+.+......+......+        +...     .++...++++...-.+....|
T Consensus        41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~--------~~D~-----~~i~a~~~~~~~~~~~l~~~~  107 (125)
T PF13801_consen   41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAP--------PPDE-----AAIEALLEEIREAQAELRQER  107 (125)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS--------SS-H-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999998876542        1111     455566778888888889999


Q ss_pred             HHHHHHHHhhcCHHHHH
Q 024389          222 KSVIAEIVGALSVYQAA  238 (268)
Q Consensus       222 ~~TL~~v~~iLTp~QAA  238 (268)
                      .+++.++..+|||.|=+
T Consensus       108 ~~~~~~~~~~LtpeQR~  124 (125)
T PF13801_consen  108 LEHLLEIRAVLTPEQRA  124 (125)
T ss_dssp             HHHHHHHHHTT-GGGHH
T ss_pred             HHHHHHHHHcCCHHHhC
Confidence            99999999999999855

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=96.95  E-value=0.035  Score=48.43  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPA--------LIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSV  213 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~a--------Ls~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~  213 (268)
                      +||++|...|..|+...+.+=.+        ..+.|....+.+.+.+.++     .+..        +++....+.+...
T Consensus        52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~-----~FDe--------aavral~~~~~~~  118 (170)
T PRK12750         52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLAD-----DFDE--------AAANDLAKQMVEK  118 (170)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcC-----CCCH--------HHHHHHHHHHHHH
Confidence            59999999999999887765444        3444554554444444321     0111        1222222222222


Q ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 024389          214 FVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP  266 (268)
Q Consensus       214 l~qAD~LR~~TL~~v~~iLTp~QAA~fL~A~~e~~~~lr~~~~~~~~~~~~~~  266 (268)
                      -.+.---|.++.++++.||||-|=+.|-.-..+......+.+  +..++++.|
T Consensus       119 ~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~--~~~~~~~~~  169 (170)
T PRK12750        119 QVERRVKMLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM--HKRMKKHAS  169 (170)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCC
Confidence            223333467789999999999999999988777777666665  444444443

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.068  Score=46.37  Aligned_cols=89  Identities=19%  Similarity=0.160  Sum_probs=62.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLR  221 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~LR  221 (268)
                      +||++|..+|..+...-+   .+..+-+..-...+-+.+.++        ..+     ++++....+.++..-.+.+.+|
T Consensus        57 ~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~--------~~D-----~aka~a~~~~m~~~~~~~~~~r  120 (160)
T COG3678          57 DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAAD--------QFD-----EAKARAQAEKMENQRQALRELR  120 (160)
T ss_pred             cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC--------CcC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999988776   444444444444444433221        111     1355677888888899999999


Q ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHH
Q 024389          222 KSVIAEIVGALSVYQAALFLEGLAQ  246 (268)
Q Consensus       222 ~~TL~~v~~iLTp~QAA~fL~A~~e  246 (268)
                      .++-.++..||||.|.+.|=--.++
T Consensus       121 ~k~~~~m~~vLTPEQr~~l~~~~~~  145 (160)
T COG3678         121 VKSDNQMYQVLTPEQRAKLQELLAQ  145 (160)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999876554443

>PRK10455 periplasmic protein; Reviewed

Probab=95.00  E-value=0.36  Score=41.83  Aligned_cols=85  Identities=14%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALI-GRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRL  220 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~L  220 (268)
                      +||++|..+|..|-+..+..-...+ ++.+.++.-    +.+        ++-     -++++...++.+...-.+.-..
T Consensus        56 ~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~~l----i~a--------d~F-----Deaavra~~~k~~~~~~~~~~~  118 (161)
T PRK10455         56 NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMHDI----IAS--------DTF-----DKAKAEAQITKMEAQRKARMLA  118 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH----Hcc--------Ccc-----CHHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999877665533322 222222211    111        110     0133444455555555555567


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHH
Q 024389          221 RKSVIAEIVGALSVYQAALFLEG  243 (268)
Q Consensus       221 R~~TL~~v~~iLTp~QAA~fL~A  243 (268)
                      |.++-.+|+.||||-|-+.|=.-
T Consensus       119 ~~~~~~qiy~vLTPEQr~q~~~~  141 (161)
T PRK10455        119 HMETQNKIYNVLTPEQKKQFNAN  141 (161)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHH
Confidence            88999999999999999987643

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=94.03  E-value=1.3  Score=38.52  Aligned_cols=95  Identities=12%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPAL-IGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRL  220 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aL-s~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~L  220 (268)
                      +||++|...|-.+-...+...+.. -.+++.++.    .+.+     ..+..        +++...++.+...-.+----
T Consensus        56 ~LTd~QR~qmr~im~~~r~~~~~~~~~~~~~m~~----Li~A-----d~FDe--------aAvra~~~kma~~~~e~~v~  118 (162)
T PRK12751         56 NLTEQQRQQMRDLMRQSHQSQPRLDLEDREAMHK----LITA-----DKFDE--------AAVRAQAEKMSQNQIERHVE  118 (162)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccchhHHHHHHHHH----HHhc-----CCCCH--------HHHHHHHHHHHHHHHHHHHH
Confidence            599999999999988877753211 112222222    2211     10111        33333444444444444457


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhh
Q 024389          221 RKSVIAEIVGALSVYQAALFLEGLAQFLVGLRD  253 (268)
Q Consensus       221 R~~TL~~v~~iLTp~QAA~fL~A~~e~~~~lr~  253 (268)
                      +.++..+++.+|||-|-+.|=.-.-+-...+|.
T Consensus       119 ~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~  151 (162)
T PRK12751        119 MAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ  151 (162)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            788999999999999999987766665555543

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=93.45  E-value=0.7  Score=40.47  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIG-RIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRL  220 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~-~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~L  220 (268)
                      +||++|...|-+|.+.-+.+.+.++. +++.++    +.+.++     .+ +   .    +++....+.+...=.+.-=-
T Consensus        50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad-----~F-D---E----aavra~a~kma~~~~e~~Ve  112 (166)
T PRK10363         50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAE-----NF-D---E----NAVRAQAEKMAQEQVARQVE  112 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcC-----CC-C---H----HHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999888876555542 233333    111111     01 1   1    22333333333333333335


Q ss_pred             HHHHHHHHHhhcCHHHHHHHH
Q 024389          221 RKSVIAEIVGALSVYQAALFL  241 (268)
Q Consensus       221 R~~TL~~v~~iLTp~QAA~fL  241 (268)
                      |.++=++|+.||||-|-+.|=
T Consensus       113 m~k~~nqmy~lLTPEQKaq~~  133 (166)
T PRK10363        113 MAKVRNQMYRLLTPEQQAVLN  133 (166)
T ss_pred             HHHHHHHHHHhCCHHHHHHHH
Confidence            778889999999999999983

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=93.08  E-value=0.71  Score=35.11  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPAL---IGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDAN  218 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aL---s~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD  218 (268)
                      +||++|...+..|....+..-..+   .+.+.++..   +..           +  . ..+ ..+ ..++.+...-.+.-
T Consensus        14 ~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~--~-~~~-~~~-~~~~~~~~~~~~~~   74 (100)
T PF07813_consen   14 NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD---PSF-----------D--E-AAP-EAL-AAMAEMMELRAEMM   74 (100)
T ss_dssp             --THHHHHHHHHHHHHHCTTS------HHHHHHHHH---SS---------------H-HHH-HHH-H--HHCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc---ccC-----------C--h-hHH-HHH-HHHHHHHHHHHHHH
Confidence            499999999999999888877777   222222222   000           0  0 011 111 12244455555566


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHH
Q 024389          219 RLRKSVIAEIVGALSVYQAALF  240 (268)
Q Consensus       219 ~LR~~TL~~v~~iLTp~QAA~f  240 (268)
                      ..|..+...+..||||-|=+.|
T Consensus        75 ~~~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   75 EERAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHH
Confidence            6788999999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 22/175 (12%), Positives = 67/175 (38%), Gaps = 21/175 (12%)

Query: 101 HPYLFTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRL 160
           H Y + +++  F D   +  + +D  D   +    +L   +    +++   + +  G   
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILS--KEEIDHIIMSKDAVS-GTLR 66

Query: 161 MVPALIGRIKKVQSGFVGRIAE---DWVAFERQSDEELKGVIGEAMKEEMDDM---VSVF 214
           +   L+ + +++   FV  +      ++    ++++    ++     E+ D +     VF
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 215 VDANRLRKSVIAEIVGALSVYQAA--LFLEGLA----QFLVG--LRDREVLGELN 261
              N  R     ++  AL   + A  + ++G+      ++        +V  +++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.19
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	95.52
3o39_A	108	Periplasmic protein related to spheroblast format;	93.64
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	93.5
3lay_A	175	Zinc resistance-associated protein; salmonella typ	87.92

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.19  E-value=0.0063  Score=49.18  Aligned_cols=91  Identities=15%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLR  221 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~LR  221 (268)
                      +||++|-..|+.|+..-.....+|..+|...-..+++.+..+      .   +.++.|.+++...-.       ..-.|+
T Consensus        20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~------~---~~~p~V~aaid~~h~-------~mG~LQ   83 (118)
T 2y39_A           20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN------P---AWSPEVEAATQEVER-------AAGDLQ   83 (118)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C---SCCHHHHHHHHHHHH-------HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c---ccCHHHHHHHHHHHH-------HHHHHH
Confidence            699999999999999999999999999999999999887532      1   122445455533322       444589


Q ss_pred             HHHH---HHHHhhcCHHHHHHHHHHHHHHH
Q 024389          222 KSVI---AEIVGALSVYQAALFLEGLAQFL  248 (268)
Q Consensus       222 ~~TL---~~v~~iLTp~QAA~fL~A~~e~~  248 (268)
                      ..||   -+|..||||-|+..|=-.+.+-+
T Consensus        84 keTi~HvfeMR~VLtPeQ~~~fd~~vv~al  113 (118)
T 2y39_A           84 RATLVHVFEMRAGLKPEHRPAYDRVLIDAL  113 (118)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9994   45668999999999976665543

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=95.52  E-value=0.11  Score=43.13  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIG-RIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRL  220 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~-~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~L  220 (268)
                      +||++|..+|..|....+.+.+.+.. ....    +-..+.     .   ++..     ++++...++.+...-.+.--.
T Consensus        45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~----l~~Li~-----a---d~fD-----eaa~ral~~~~~~~~~e~~v~  107 (145)
T 3itf_A           45 SLTEHQRQQMRDLMQQARHEQPPVNVSELET----MHRLVT-----A---ENFD-----ENAVRAQAEKMANEQIARQVE  107 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHT-----C---SSCC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHc-----c---CCCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999888876544321 1121    111111     1   1111     145556666666666777778


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 024389          221 RKSVIAEIVGALSVYQAALFLEGLAQFLVGL  251 (268)
Q Consensus       221 R~~TL~~v~~iLTp~QAA~fL~A~~e~~~~l  251 (268)
                      |.++-.+|..||||-|-+.|-.-..+-...+
T Consensus       108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~  138 (145)
T 3itf_A          108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL  138 (145)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999877555444333

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=93.64  E-value=0.12  Score=40.78  Aligned_cols=84  Identities=15%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALI-GRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRL  220 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~L  220 (268)
                      +||++|...|-.|....+..-+... .+...+    -+.+.+        ++-.     ++++...++.+...-.+.---
T Consensus        17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m----~~Li~a--------d~FD-----Eaaar~l~~~~~~~~~e~~v~   79 (108)
T 3o39_A           17 NLTDAQKQQIREIMKGQRDQMKRPPLEERRAM----HDIIAS--------DTFD-----KAKAEAQIAKMEEQRKANMLA   79 (108)
T ss_dssp             CCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHH----HHHHSS--------SSCC-----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccHHHHHHH----HHHhcc--------CCCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999988776643322 111111    111111        1111     133444444444444444457


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHH
Q 024389          221 RKSVIAEIVGALSVYQAALFLE  242 (268)
Q Consensus       221 R~~TL~~v~~iLTp~QAA~fL~  242 (268)
                      |.++=.+|..||||-|-+.|-.
T Consensus        80 ~~r~~~qmy~lLTPEQk~q~~~  101 (108)
T 3o39_A           80 HMETQNKIYNILTPEQKKQFNA  101 (108)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHH
Confidence            7888899999999999998743

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=93.50  E-value=0.032  Score=45.74  Aligned_cols=94  Identities=14%  Similarity=0.040  Sum_probs=55.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLR  221 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~g~~~~~~~~~~a~~~kl~~L~~~l~qAD~LR  221 (268)
                      +||++|..+|..|....+..-...   +....+.+.+.+.+        ++..     ++++...++.+...-.+.--.|
T Consensus        33 ~LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~a--------~~fD-----eaav~al~~~~~~~~~e~~~~~   96 (138)
T 3oeo_A           33 NLTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIITS--------DTFD-----KVKAEAQIAKMEEQRKANMLAH   96 (138)
T ss_dssp             CCCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHTC--------SSCC-----HHHHHHHHGGGSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc--------CCCC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999988876643211   11111222221111        1110     1344455556666666666788


Q ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 024389          222 KSVIAEIVGALSVYQAALFLEGLAQFLVGL  251 (268)
Q Consensus       222 ~~TL~~v~~iLTp~QAA~fL~A~~e~~~~l  251 (268)
                      .++..+|..||||-|-+.|-.-..+-...+
T Consensus        97 ~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~  126 (138)
T 3oeo_A           97 METQNKIYNILTPEQKKQFNANFEKRLTER  126 (138)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999877655544333

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=87.92  E-value=4.2  Score=34.53  Aligned_cols=40  Identities=8%  Similarity=0.034  Sum_probs=34.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 024389          142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIA  181 (268)
Q Consensus       142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~  181 (268)
                      +||++|..++..|.++.+..-.+|.+.|...++.+...+.
T Consensus        67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~  106 (175)
T 3lay_A           67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT  106 (175)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999999999999998888888776554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00