Citrus Sinensis ID: 024432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MVLTKCLSITTTTTTVAATISKSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHcccccEEEEccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccc
ccHHHccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHccccccccHHHcccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHccccEEEEEEEEEccccccccHHHHHccccccEEEEEEEEccccccHHHHHHHHHHccccccccEEccEEcHHHcEEEccccHHHHHHHHHHHHHHHHHHHcccccEEcccccEEEccHHHccHHHHcccccccccccccccccEEEcc
MVLTKCLSITTTTTTVAATISKSPLLlissslsspknplslskpnpthfpltarpisthykppmnilnklgfgfrpspdpastensaiaqgpdddvpapgqqfsqfgagcfwGVELAFqrvpgvtktevgysqgylhnpsyedvcsgttnhnevvrvqydpkecsfdTLLDMFwarhdptmlnrqgndvgtqyrsgiyfytpeQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLakggrfgfkqstekgcndpircyg
mvltkclsittttttvaatiskSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTmlnrqgndvgTQYRSGIYFYTPEQEKAAKESLERQQKvlnrkivteilpakkfyrAEEYHQQYLakggrfgfkqstekgcndpircyg
MvltkclsittttttvaatisksplllissslsspknplslskpnpTHFPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
****************************************************************NILNKLGF******************************FSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYT****************VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFK***************
*******SITTTTTT****IS**PLLLISSSLSSPKNPLSLSKPNPT*******************LN**GF********************DDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
MVLTKCLSITTTTTTVAATISKSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKPPMNILNKLGFGFRPS**********IAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ**********QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
*V***C***TTTTTTVAATISKSPLLLISSSLSSPKNPLSLSKPNPTH***************MNILN**GFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLTKCLSITTTTTTVAATISKSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
P54151257 Peptide methionine sulfox N/A no 0.925 0.964 0.719 1e-106
P54150258 Peptide methionine sulfox yes no 0.906 0.941 0.705 1e-103
Q9SEC2259 Peptide methionine sulfox N/A no 0.828 0.857 0.764 1e-101
Q9FKF7202 Peptide methionine sulfox no no 0.753 1.0 0.770 1e-93
Q9LY14202 Peptide methionine sulfox no no 0.753 1.0 0.756 5e-91
Q336R9263 Peptide methionine sulfox yes no 0.667 0.680 0.832 3e-90
Q9LY15218 Peptide methionine sulfox no no 0.682 0.839 0.754 2e-82
P54153196 Peptide methionine sulfox N/A no 0.690 0.943 0.671 7e-71
P54152191 Peptide methionine sulfox N/A no 0.701 0.984 0.647 1e-68
Q7XUP7187 Peptide methionine sulfox no no 0.652 0.935 0.662 3e-68
>sp|P54151|MSRA_BRANA Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1 Back     alignment and function desciption
 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/257 (71%), Positives = 210/257 (81%), Gaps = 9/257 (3%)

Query: 19  TISKSPLLLISSSLSSP-----KNPLSLSK-PNPTH-FPLTARPISTHYKPPMNILNKLG 71
           +I  SP ++ + SLS P     K  LSLSK   PT  FP TAR IS +  P  N+  +LG
Sbjct: 3   SIVASPPVISAVSLSKPLQSLAKAALSLSKRAKPTSPFPKTARSISVYKSPMNNLFTRLG 62

Query: 72  FGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGY 131
           FG RP PDPA++  SAIAQGPDDDVP+PGQQF+QFGAGCFWG ELA+QRVPGVTKTEVGY
Sbjct: 63  FGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGY 120

Query: 132 SQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGT 191
           S G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPT LNRQGNDVGT
Sbjct: 121 SHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGT 180

Query: 192 QYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFG 251
           +YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G
Sbjct: 181 RYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMG 240

Query: 252 FKQSTEKGCNDPIRCYG 268
             QS EKGCNDPIRCYG
Sbjct: 241 LSQSAEKGCNDPIRCYG 257
Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
Brassica napus (taxid: 3708)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1
>sp|P54150|MSRA4_ARATH Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana GN=MSR4 PE=1 SV=2 Back     alignment and function description
>sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1 Back     alignment and function description
>sp|Q9FKF7|MSRA1_ARATH Peptide methionine sulfoxide reductase A1 OS=Arabidopsis thaliana GN=MSRA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY14|MSRA3_ARATH Peptide methionine sulfoxide reductase A3 OS=Arabidopsis thaliana GN=MSRA3 PE=1 SV=1 Back     alignment and function description
>sp|Q336R9|MSRA4_ORYSJ Peptide methionine sulfoxide reductase A4, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRA4 PE=2 SV=2 Back     alignment and function description
>sp|Q9LY15|MSRA2_ARATH Peptide methionine sulfoxide reductase A2 OS=Arabidopsis thaliana GN=MRSA2 PE=1 SV=1 Back     alignment and function description
>sp|P54153|MSRA_SOLLC Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1 Back     alignment and function description
>sp|P54152|MSRA_FRAAN Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2 Back     alignment and function description
>sp|Q7XUP7|MSR21_ORYSJ Peptide methionine sulfoxide reductase A2-1 OS=Oryza sativa subsp. japonica GN=MSRA2-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255539919261 methionine sulfoxide reductase, putative 0.970 0.996 0.758 1e-111
42795445261 methionine sulfoxide reductase A [Populu 0.865 0.888 0.834 1e-110
119390444261 Chain A, Functional And Structural Aspec 0.865 0.888 0.830 1e-109
118486884260 unknown [Populus trichocarpa] 0.865 0.892 0.821 1e-108
29469000255 peptide methionine sulfoxide reductase [ 0.850 0.894 0.804 1e-106
224136412203 methionine sulfoxide reductase type [Pop 0.757 1.0 0.897 1e-105
449521750263 PREDICTED: peptide methionine sulfoxide 0.794 0.809 0.823 1e-105
1136793257 PMSR protein [Brassica napus] 0.925 0.964 0.715 1e-104
1709690257 RecName: Full=Peptide methionine sulfoxi 0.925 0.964 0.719 1e-104
344227185257 methionine sulfoxide reductase A4 [Solan 0.955 0.996 0.710 1e-104
>gi|255539919|ref|XP_002511024.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223550139|gb|EEF51626.1| methionine sulfoxide reductase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/269 (75%), Positives = 223/269 (82%), Gaps = 9/269 (3%)

Query: 1   MVLTKCLSITTTTTTVAATISKSPLLLISSSLSSPKN-PLSLSKPNPTHFPLTARPISTH 59
           M+ T   S TTT  T    IS S L     SLS  KN   SLSKP    +P  ++PIS +
Sbjct: 1   MLQTLAASSTTTANTGLILISSSSLTKPFVSLS--KNFQSSLSKP--FTYPQNSKPIS-Y 55

Query: 60  YKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQ 119
           Y+PPMNILNKLGFG +P P   ST +  I QGPDDDVPAPGQQFSQFGAGCFWGVELAFQ
Sbjct: 56  YRPPMNILNKLGFGTKPDP---STMDPTIPQGPDDDVPAPGQQFSQFGAGCFWGVELAFQ 112

Query: 120 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 179
           RVPGVTKTEVGY+QG +HNPSYEDVC+GTT HNEVVRVQYDPKECS+D LLD+FWARHDP
Sbjct: 113 RVPGVTKTEVGYTQGLMHNPSYEDVCTGTTKHNEVVRVQYDPKECSYDALLDIFWARHDP 172

Query: 180 TMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEY 239
           T LNRQGNDVGTQYRSGIY+YTPEQEKAA+ES+ER Q ++ RKIVTEILPAKKFYRAEEY
Sbjct: 173 TTLNRQGNDVGTQYRSGIYYYTPEQEKAAQESMERHQDLMGRKIVTEILPAKKFYRAEEY 232

Query: 240 HQQYLAKGGRFGFKQSTEKGCNDPIRCYG 268
           HQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct: 233 HQQYLAKGGRFGFRQSTEKGCNDPIRCYG 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|42795445|gb|AAS46232.1| methionine sulfoxide reductase A [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|119390444|pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Back     alignment and taxonomy information
>gi|118486884|gb|ABK95276.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|29469000|gb|AAO43182.1| peptide methionine sulfoxide reductase [Gossypium barbadense] Back     alignment and taxonomy information
>gi|224136412|ref|XP_002322323.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222869319|gb|EEF06450.1| methionine sulfoxide reductase type [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449521750|ref|XP_004167892.1| PREDICTED: peptide methionine sulfoxide reductase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|1136793|emb|CAA62760.1| PMSR protein [Brassica napus] Back     alignment and taxonomy information
>gi|1709690|sp|P54151.1|MSRA_BRANA RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase gi|853739|emb|CAA88538.1| peptide methionine sulfoxide reductase [Brassica napus] gi|1143406|emb|CAA63919.1| methionine sulfoxide reductase [Brassica napus] Back     alignment and taxonomy information
>gi|344227185|gb|AEN03272.1| methionine sulfoxide reductase A4 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2117313258 PMSR4 "AT4G25130" [Arabidopsis 0.813 0.844 0.761 9e-93
UNIPROTKB|Q336R9263 MSRA4 "Peptide methionine sulf 0.764 0.779 0.775 2.9e-87
TAIR|locus:2151646202 PMSR1 "AT5G61640" [Arabidopsis 0.753 1.0 0.770 6e-87
TAIR|locus:2183419202 PMSR3 "AT5G07470" [Arabidopsis 0.753 1.0 0.756 1.7e-84
TAIR|locus:2183409218 PMSR2 "AT5G07460" [Arabidopsis 0.682 0.839 0.754 1.5e-76
DICTYBASE|DDB_G0276579147 msrA "peptide methionine sulfo 0.518 0.945 0.589 1.4e-41
TIGR_CMR|GSU_3161162 GSU_3161 "peptide methionine s 0.533 0.882 0.572 3.6e-41
ZFIN|ZDB-GENE-041014-344235 si:dkey-221h15.1 "si:dkey-221h 0.559 0.638 0.554 8.7e-40
UNIPROTKB|P0A744212 msrA "methionine sulfoxide red 0.652 0.825 0.486 2.9e-39
ZFIN|ZDB-GENE-050309-123238 im:7149628 "im:7149628" [Danio 0.589 0.663 0.503 1.3e-38
TAIR|locus:2117313 PMSR4 "AT4G25130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 169/222 (76%), Positives = 192/222 (86%)

Query:    49 FPLTAR-PISTHYKPPMN-ILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQF 106
             FP T+R PIS  YK PMN + N+LGFG RP    A   ++AIAQGPDDDVP+ GQQF+QF
Sbjct:    39 FPQTSRRPISV-YKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQF 96

Query:   107 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSF 166
             GAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF
Sbjct:    97 GAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSF 156

Query:   167 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTE 226
             ++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTE
Sbjct:   157 ESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTE 216

Query:   227 ILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 268
             ILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:   217 ILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258
GO:0006464 "cellular protein modification process" evidence=ISS
GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010114 "response to red light" evidence=TAS
GO:0010218 "response to far red light" evidence=TAS
GO:0034599 "cellular response to oxidative stress" evidence=IEP;IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0005739 "mitochondrion" evidence=IDA
UNIPROTKB|Q336R9 MSRA4 "Peptide methionine sulfoxide reductase A4, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183419 PMSR3 "AT5G07470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183409 PMSR2 "AT5G07460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3161 GSU_3161 "peptide methionine sulfoxide reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-344 si:dkey-221h15.1 "si:dkey-221h15.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P0A744 msrA "methionine sulfoxide reductase A" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050309-123 im:7149628 "im:7149628" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54151MSRA_BRANA1, ., 8, ., 4, ., 1, 10.71980.92530.9649N/Ano
P54150MSRA4_ARATH1, ., 8, ., 4, ., 1, 10.70580.90670.9418yesno
B5Y2Y3MSRA_KLEP31, ., 8, ., 4, ., 1, 10.51970.63430.8056yesno
Q9SEC2MSRA_LACSA1, ., 8, ., 4, ., 1, 10.76410.82830.8571N/Ano
Q336R9MSRA4_ORYSJ1, ., 8, ., 4, ., 1, 10.83240.66790.6806yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.40.691
4th Layer1.8.4.110.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrcMsrA3
methionine sulfoxide reductase type (204 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PtrMsrB2
SubName- Full=Putative uncharacterized protein; (147 aa)
•••   • 0.523
PtrMsrB4
methionine sulfoxide reductase type (136 aa)
•••   • 0.520
PtrMsrB1
methionine sulfoxide reductase type (136 aa)
•••   • 0.518
PtrMsrB3
methionine sulfoxide reductase type (134 aa)
• •   • 0.483
MsrB1
Methionine sulfoxide reductase type b (137 aa)
• •   • 0.479
MsrB3
methionine sulfoxide reductase type (155 aa)
• •   • 0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
COG0225174 COG0225, MsrA, Peptide methionine sulfoxide reduct 8e-84
pfam01625147 pfam01625, PMSR, Peptide methionine sulfoxide redu 5e-82
PRK14054172 PRK14054, PRK14054, methionine sulfoxide reductase 3e-80
PRK00058213 PRK00058, PRK00058, methionine sulfoxide reductase 8e-76
TIGR00401149 TIGR00401, msrA, methionine-S-sulfoxide reductase 6e-74
PRK05550283 PRK05550, PRK05550, bifunctional methionine sulfox 1e-71
PRK13014186 PRK13014, PRK13014, methionine sulfoxide reductase 1e-68
PRK14018 521 PRK14018, PRK14018, trifunctional thioredoxin/meth 5e-45
PRK05528156 PRK05528, PRK05528, methionine sulfoxide reductase 7e-26
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  247 bits (634), Expect = 8e-84
 Identities = 84/152 (55%), Positives = 103/152 (67%), Gaps = 2/152 (1%)

Query: 97  PAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVR 156
           P  G + + F  GCFWGVE  F+++PGV  T  GY+ G+  NP+YE+VCSGTT H E V 
Sbjct: 2   PPAGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVE 61

Query: 157 VQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQ 216
           V YDPK  S++ LL++F+  HDPT LNRQGND GTQYRS IY+   EQ+  A+ S+E  Q
Sbjct: 62  VTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQ 121

Query: 217 K--VLNRKIVTEILPAKKFYRAEEYHQQYLAK 246
                 + IVTEI PAK FY AEEYHQ YL K
Sbjct: 122 ASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKK 153

Length = 174
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase Back     alignment and domain information
>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase Back     alignment and domain information
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG1635191 consensus Peptide methionine sulfoxide reductase [ 100.0
COG0225174 MsrA Peptide methionine sulfoxide reductase [Postt 100.0
PRK13014186 methionine sulfoxide reductase A; Provisional 100.0
PRK00058213 methionine sulfoxide reductase A; Provisional 100.0
PRK14054172 methionine sulfoxide reductase A; Provisional 100.0
TIGR00401149 msrA methionine-S-sulfoxide reductase. This model 100.0
PF01625155 PMSR: Peptide methionine sulfoxide reductase; Inte 100.0
PRK05528156 methionine sulfoxide reductase A; Provisional 100.0
PRK05550283 bifunctional methionine sulfoxide reductase B/A pr 100.0
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 100.0
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 94.8
COG260871 CopZ Copper chaperone [Inorganic ion transport and 85.79
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-81  Score=546.28  Aligned_cols=187  Identities=74%  Similarity=1.208  Sum_probs=183.7

Q ss_pred             CccccccCCCCCCCCCCCCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcC
Q 024432           82 STENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDP  161 (268)
Q Consensus        82 ~~~~~~~~~~p~~~~~~~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp  161 (268)
                      +++++.+++.++.+++.++++.|+||+|||||+|++|+++|||++|+|||+||.++||||++||+|+|||+|+|+|+|||
T Consensus         5 ~~~~s~i~~~~d~d~~~~g~q~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydp   84 (191)
T KOG1635|consen    5 TMDPSNIAQVIDVDVPAPGLQFATFGAGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDP   84 (191)
T ss_pred             ccccccccCCCcCCCCCCccceeeeeccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCc
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHH
Q 024432          162 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQ  241 (268)
Q Consensus       162 ~~ISye~LL~~F~~~hDPT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ  241 (268)
                      ++|||++|||+||++||||++||||+|+|+||||+||++++||+++|++++++.|++++++|+|+|+|+++||.||||||
T Consensus        85 k~~sy~~Lld~Fw~~HdPtt~n~QG~D~GtQYRS~I~~~s~eq~k~A~~s~e~~Q~k~~~kI~T~I~p~~kFY~AE~yHQ  164 (191)
T KOG1635|consen   85 KVISYEELLDFFWSRHDPTTLNRQGNDVGTQYRSGIYTYSPEQEKLARESKEREQKKWNGKIVTEILPAKKFYRAEEYHQ  164 (191)
T ss_pred             ccccHHHHHHHHHHcCCchhhhccCCcccceeeeeeeeCCHHHHHHHHHHHHHHHhccCCcceEEEeeccchhhchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCccccccCCCCCcceeeC
Q 024432          242 QYLAKGGRFGFKQSTEKGCNDPIRCYG  268 (268)
Q Consensus       242 ~Yl~Knp~~g~~~s~~kg~~~~ircyg  268 (268)
                      +||.|||++||+||..+||+|||||||
T Consensus       165 qYl~K~~~~Gy~~s~~~~~~~pi~c~g  191 (191)
T KOG1635|consen  165 QYLSKNPRNGYAQSTHKGRKDPIRCYG  191 (191)
T ss_pred             HHHhhCCCCccccccCCcccCcccccC
Confidence            999999999999999999999999998

>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13014 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK00058 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK14054 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>TIGR00401 msrA methionine-S-sulfoxide reductase Back     alignment and domain information
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] Back     alignment and domain information
>PRK05528 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2j89_A261 Functional And Structural Aspects Of Poplar Cytosol 1e-110
2gt3_A212 Solution Structure And Dynamics Of The Reduced Form 5e-41
2iem_A211 Solution Structure Of An Oxidized Form (Cys51-Cys19 4e-40
1ff3_A211 Structure Of The Peptide Methionine Sulfoxide Reduc 8e-40
1fva_A217 Crystal Structure Of Bovine Methionine Sulfoxide Re 5e-38
2l90_A212 Solution Structure Of Murine Myristoylated Msra Len 7e-38
1fvg_A199 Crystal Structure Of Bovine Peptide Methionine Sulf 7e-38
3bqe_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-34
3bqh_A193 Structure Of The Central Domain (Msra) Of Neisseria 2e-34
3bqf_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-33
3bqg_A194 Structure Of The Central Domain (msra) Of Neisseria 2e-33
4gwb_A168 Crystal Structure Of Putative Peptide Methionine Su 5e-26
3e0m_A 313 Crystal Structure Of Fusion Protein Of Msra And Msr 2e-25
1nwa_A203 Structure Of Mycobacterium Tuberculosis Methionine 8e-25
3pil_A184 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 2e-23
3pim_A187 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 2e-23
3pin_B183 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 1e-21
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/222 (86%), Positives = 205/222 (92%), Gaps = 4/222 (1%)
Query: 48  HFPLTARPISTHYKPPM-NILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQF 106
           +FP T +PIS +YKPPM NIL+KLGFG R SPDP ST +  I QGPDDD+PAPGQQF+QF
Sbjct: 43  NFPRTLKPIS-YYKPPMANILSKLGFGTR-SPDP-STMDPTIPQGPDDDLPAPGQQFAQF 99
Query: 107 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSF 166
           GAGCFWGVELAFQRVPGVTKTEVGY+QG LHNP+YEDV +GTTNHNEVVRVQYDPKECSF
Sbjct: 100 GAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPKECSF 159
Query: 167 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTE 226
           DTL+D+ WARHDPT LNRQGNDVGTQYRSGIY+YTPEQEKAAKESLERQQK+LNRKIVTE
Sbjct: 160 DTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTE 219
Query: 227 ILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 268
           ILPAKKFYRAEEYHQQYLAKGGRFGF QS EKGCNDPIRCYG
Sbjct: 220 ILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 Back     alignment and structure
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 Back     alignment and structure
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 Back     alignment and structure
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 Back     alignment and structure
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 Back     alignment and structure
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 Back     alignment and structure
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 Back     alignment and structure
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 Back     alignment and structure
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 Back     alignment and structure
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 Back     alignment and structure
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 Back     alignment and structure
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 Back     alignment and structure
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 Back     alignment and structure
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 Back     alignment and structure
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 Back     alignment and structure
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 1e-132
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 1e-100
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 2e-95
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 5e-94
3pim_A187 Peptide methionine sulfoxide reductase; methionine 7e-92
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 1e-81
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 1e-79
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 Back     alignment and structure
 Score =  374 bits (962), Expect = e-132
 Identities = 203/266 (76%), Positives = 223/266 (83%), Gaps = 9/266 (3%)

Query: 3   LTKCLSITTTTTTVAATISKSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKP 62
           L+  LS T+T+TT       +PLLL+S    SP     LS   P +FP T +PIS +  P
Sbjct: 5   LSTHLSSTSTSTT-------TPLLLLSKPFLSPSAKSQLSHSKPFNFPRTLKPISYYKPP 57

Query: 63  PMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVP 122
             NIL+KLGFG   SPDP+ T +  I QGPDDD+PAPGQQF+QFGAGCFWGVELAFQRVP
Sbjct: 58  MANILSKLGFG-TRSPDPS-TMDPTIPQGPDDDLPAPGQQFAQFGAGCFWGVELAFQRVP 115

Query: 123 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTML 182
           GVTKTEVGY+QG LHNP+YEDVC+GTTNHNEVVRVQYDPKECSFDTL+D+ WARHDPT L
Sbjct: 116 GVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTL 175

Query: 183 NRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQ 242
           NRQGNDVGTQYRSGIY+YTPEQEKAAKESLERQQK+LNRKIVTEILPAKKFYRAEEYHQQ
Sbjct: 176 NRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTEILPAKKFYRAEEYHQQ 235

Query: 243 YLAKGGRFGFKQSTEKGCNDPIRCYG 268
           YLAKGGRFGF QS EKGCNDPIRCYG
Sbjct: 236 YLAKGGRFGFMQSAEKGCNDPIRCYG 261
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 100.0
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 100.0
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 100.0
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 100.0
3pim_A187 Peptide methionine sulfoxide reductase; methionine 100.0
4gwb_A168 Peptide methionine sulfoxide reductase MSRA 3; str 100.0
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 100.0
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 100.0
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 95.87
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 95.32
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 95.21
2l3m_A71 Copper-ION-binding protein; structural genomics, c 95.1
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 95.09
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 94.79
1opz_A76 Potential copper-transporting ATPase; mutation, fo 94.68
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 94.65
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 94.38
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 94.36
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 94.36
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 94.33
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 94.3
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 94.29
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 94.13
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 93.96
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 93.95
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 93.83
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 93.51
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 93.08
1yg0_A66 COP associated protein; open-faced beta-sandwich, 92.97
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 92.41
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 90.96
2kkh_A95 Putative heavy metal transporter; zinc transport, 90.84
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 90.78
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 90.01
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 88.88
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 87.13
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 83.42
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 80.56
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Back     alignment and structure
Probab=100.00  E-value=2.3e-94  Score=655.51  Aligned_cols=246  Identities=79%  Similarity=1.293  Sum_probs=176.0

Q ss_pred             cCcceeehccccCCCCCCCCcCCCCCCCCCCCCCCcccccCCchhhhhhccCCCCCCCCCCCccccccCCCCCCCCCCCC
Q 024432           21 SKSPLLLISSSLSSPKNPLSLSKPNPTHFPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPG  100 (268)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~m~~l~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  100 (268)
                      +.++|+.++|++..+...++||++.+++||+|+|+|+++.+|||.+++|+++++.  ..++.-...-..++++.+.|.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mm~~~~k~~~~~~--~~alpgr~~h~v~g~~~~~p~~~   93 (261)
T 2j89_A           16 TTTPLLLLSKPFLSPSAKSQLSHSKPFNFPRTLKPISYYKPPMANILSKLGFGTR--SPDPSTMDPTIPQGPDDDLPAPG   93 (261)
T ss_dssp             -----------------------------------------------------------------CCTTTSCCCCCCSTT
T ss_pred             CCccceeeccccccchhhhcccCCCccccCccCCceeeecchhhhhhccCCCCCh--hhcCCCcccccCCCCCCCCCCCC
Confidence            4557777899944455566999999999999999999988888899999998876  33221112334566666666578


Q ss_pred             CeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCCC
Q 024432          101 QQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPT  180 (268)
Q Consensus       101 ~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDPT  180 (268)
                      +++|+||||||||+|+.|++++||++|+|||+||+++||||++||+|+|||+|||+|+|||++|||++||++||++||||
T Consensus        94 ~e~a~fAgGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw~~hDPT  173 (261)
T 2j89_A           94 QQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPT  173 (261)
T ss_dssp             CEEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHHHHSCTT
T ss_pred             CeEEEEecCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHHHHHHhCCCCCccccccCCC
Q 024432          181 MLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGC  260 (268)
Q Consensus       181 ~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~s~~kg~  260 (268)
                      +.||||+|+|+||||+|||+|++|+++|++++++++++++++|+|||+|+.+||+||||||+||+|||++||.||++|||
T Consensus       174 ~~nrQG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~~~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~qsa~kgC  253 (261)
T 2j89_A          174 TLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGC  253 (261)
T ss_dssp             STTEETTEESGGGCEEEEESSHHHHHHHHHHHHHHHTTCSSCCCCEEEECCCEEECCGGGTTTTTTTTTTSCCCCCCTTC
T ss_pred             ccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCeeECHHHHHHHHHHCCCCCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeC
Q 024432          261 NDPIRCYG  268 (268)
Q Consensus       261 ~~~ircyg  268 (268)
                      +|||||||
T Consensus       254 ~~~ir~~g  261 (261)
T 2j89_A          254 NDPIRCYG  261 (261)
T ss_dssp             CSCCCSCC
T ss_pred             CCchhhcC
Confidence            99999998
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Back     alignment and structure
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1ff3a_211 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 4e-47
d1fvga_192 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 3e-46
d1nwaa_168 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-44
d1cpza_68 d.58.17.1 (A:) Copper chaperone {Enterococcus hira 1e-04
d1p6ta172 d.58.17.1 (A:1-72) Potential copper-translocating 0.002
d1osda_72 d.58.17.1 (A:) Mercuric ion binding protein MerP { 0.004
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score =  154 bits (390), Expect = 4e-47
 Identities = 88/177 (49%), Positives = 109/177 (61%), Gaps = 7/177 (3%)

Query: 75  RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQG 134
           R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ G
Sbjct: 18  RNTPMPVATLH-AVNGHSMTNVPD-GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGG 75

Query: 135 YLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYR 194
           Y  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYR
Sbjct: 76  YTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYR 135

Query: 195 SGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 246
           S IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct: 136 SAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 192
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 Back     information, alignment and structure
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68 Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72 Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1ff3a_211 Peptide methionine sulfoxide reductase {Escherichi 100.0
d1fvga_192 Peptide methionine sulfoxide reductase {Cow (Bos t 100.0
d1nwaa_168 Peptide methionine sulfoxide reductase {Mycobacter 100.0
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 97.28
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 97.1
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 97.03
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 96.97
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 96.82
d1p6ta172 Potential copper-translocating P-type ATPase CopA 96.81
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 96.8
d1p6ta279 Potential copper-translocating P-type ATPase CopA 96.75
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 96.13
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 90.17
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 88.64
d2phcb284 Uncharacterized protein PH0987 {Pyrococcus horikos 88.34
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 85.86
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-71  Score=490.18  Aligned_cols=164  Identities=51%  Similarity=0.884  Sum_probs=157.0

Q ss_pred             CCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCC
Q 024432           99 PGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD  178 (268)
Q Consensus        99 ~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hD  178 (268)
                      .++++|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||
T Consensus        40 ~~~e~a~fagGCFWg~E~~f~~l~GV~~t~~GYaGG~~~nPtY~~VcsG~TgH~E~V~V~yDp~~isy~~Ll~~F~~~hD  119 (211)
T d1ff3a_          40 DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHD  119 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHSSC
T ss_pred             CCCeEEEEeccchhhhhHHHhcCCCEEEEeceecCCCCCCCCccccccCCCCCceeEEEEeccccCCHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhc-----CCceEEEEEeCCCcccCchhHHHHHHhCCCCCcc
Q 024432          179 PTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFK  253 (268)
Q Consensus       179 PT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~-----~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~  253 (268)
                      ||+.||||+|+|+||||+|||+|++|+++|+++++++++.+     +++|+|+|+|+.+||+||+||||||+||| .+||
T Consensus       120 PT~~n~Qg~D~G~QYRSaIf~~~~eQ~~~A~~~i~~~q~~~~~~~~~~~IvTeI~~~~~Fy~AEeyHQ~Yl~KNP-~~YC  198 (211)
T d1ff3a_         120 PAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNP-YGYC  198 (211)
T ss_dssp             TTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHHHSC-CCCC
T ss_pred             ccccccccccCCccccceeeechhHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCCCeeeCHHHHHHHHHhCC-CCCC
Confidence            99999999999999999999999999999999999988653     67999999999999999999999999999 5899


Q ss_pred             ccccCCCCCc
Q 024432          254 QSTEKGCNDP  263 (268)
Q Consensus       254 ~s~~kg~~~~  263 (268)
                      +-.-.|-..|
T Consensus       199 ~~~~~gv~~~  208 (211)
T d1ff3a_         199 GIGGIGVCLP  208 (211)
T ss_dssp             CCCCCSCCCC
T ss_pred             CCCCCCccCC
Confidence            9887776665
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure