Citrus Sinensis ID: 024440

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGKSRR
cccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccc
cccHHHHHHcHHHHccccccccccccccccccccccccEEEEEEEccccEEEEccccccHHHHHHHHHHHcHHHHHHHHHccccHHHcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEEcHHHHHHHHHHHHHccHHHccccccEccccEcccccEEEEEccHHHcccccHHHccccccEEEEEEEccccHHHHHHHHHHHcccEcccccccEEEEHHHHHHccccccccccccc
macpsllhssassfhgrfpalssssyvrptypnpinvngVVSVKAAAGGIVLVEKseaektgrlkTTYLEKIVPLLREefsytnihqvpkiEKIVVNCGIGDAAQNAKGLEAAMNDLALitgqrpvktraRNSIAtfkiregeplgiAVTLRGNMMYSFLDRLInlglprtrdfqgvnpnsfdghgnysigvkeqsvfpeirydalgkpkgidVCITTTAKTDKEGQRLLALMgmpfregggpanlIRKKKLkahhfdskskgksrr
macpsllhssassfhgrfPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLvekseaektgrlkttylEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLAlitgqrpvktrarnsiatfkiregeplgIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYdalgkpkgidVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRkkklkahhfdskskgksrr
MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGKSRR
*************************YVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMP*******************************
**********A**FHGRFP******************NGVVSVKA**************KTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPF******************************
MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKL***************
**************HGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLK**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGKSRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
O04603262 50S ribosomal protein L5, yes no 0.970 0.988 0.740 1e-113
P82192220 50S ribosomal protein L5, N/A no 0.820 0.995 0.752 4e-97
Q9ZST0279 50S ribosomal protein L5, yes no 0.808 0.774 0.666 3e-83
B8HMR6180 50S ribosomal protein L5 yes no 0.662 0.983 0.644 1e-65
P73308180 50S ribosomal protein L5 N/A no 0.666 0.988 0.629 5e-65
B7KHZ9180 50S ribosomal protein L5 yes no 0.670 0.994 0.625 1e-64
B0JHZ1179 50S ribosomal protein L5 yes no 0.659 0.983 0.636 4e-64
Q9MUU5184 50S ribosomal protein L5, N/A no 0.662 0.961 0.621 7e-64
Q8YPJ1182 50S ribosomal protein L5 yes no 0.670 0.983 0.614 1e-63
B0C1E5181 50S ribosomal protein L5 yes no 0.670 0.988 0.597 1e-63
>sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1 Back     alignment and function desciption
 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 228/266 (85%), Gaps = 7/266 (2%)

Query: 1   MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEK 60
           MA PSLL SSASSFHGRF  L++ S  R   P   NV     VK +A G VLVEKSEAEK
Sbjct: 1   MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEK 55

Query: 61  TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 120
           T RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALI
Sbjct: 56  TQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALI 115

Query: 121 TGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPN 180
           TGQ+P+KTRAR SIATFKIRE +PLGIAVTLRG++MYSFLDRLINL LPRTRDFQGV+P+
Sbjct: 116 TGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPS 175

Query: 181 SFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREG 240
           SFDG+GNYSIGVK+Q VFPEIR+DA+GK +G+DVCI+TTAK+D+EGQ+LLALMGMPFREG
Sbjct: 176 SFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFREG 235

Query: 241 GGPAN--LIRKKKLKAHHFDSKSKGK 264
           GG +   ++RKKKLK+HHFD+K KGK
Sbjct: 236 GGGSTGAIVRKKKLKSHHFDAKGKGK 261
Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
Arabidopsis thaliana (taxid: 3702)
>sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZST0|RK5_ORYSJ 50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2 Back     alignment and function description
>sp|B8HMR6|RL5_CYAP4 50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1 Back     alignment and function description
>sp|P73308|RL5_SYNY3 50S ribosomal protein L5 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplE PE=3 SV=2 Back     alignment and function description
>sp|B7KHZ9|RL5_CYAP7 50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1 Back     alignment and function description
>sp|B0JHZ1|RL5_MICAN 50S ribosomal protein L5 OS=Microcystis aeruginosa (strain NIES-843) GN=rplE PE=3 SV=1 Back     alignment and function description
>sp|Q9MUU5|RK5_MESVI 50S ribosomal protein L5, chloroplastic OS=Mesostigma viride GN=rpl5 PE=3 SV=1 Back     alignment and function description
>sp|Q8YPJ1|RL5_NOSS1 50S ribosomal protein L5 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplE PE=3 SV=1 Back     alignment and function description
>sp|B0C1E5|RL5_ACAM1 50S ribosomal protein L5 OS=Acaryochloris marina (strain MBIC 11017) GN=rplE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
255541698265 50S ribosomal protein L5, putative [Rici 0.985 0.992 0.807 1e-120
225454373265 PREDICTED: 50S ribosomal protein L5, chl 0.992 1.0 0.805 1e-119
255647208267 unknown [Glycine max] 0.988 0.988 0.762 1e-114
356568435267 PREDICTED: 50S ribosomal protein L5, chl 0.988 0.988 0.773 1e-111
297810025264 ribosomal protein L5 family protein [Ara 0.981 0.992 0.732 1e-111
15234136262 50S ribosomal protein L5 [Arabidopsis th 0.970 0.988 0.740 1e-111
356531959267 PREDICTED: 50S ribosomal protein L5, chl 0.988 0.988 0.754 1e-110
118489599267 unknown [Populus trichocarpa x Populus d 0.936 0.936 0.782 1e-110
224067846266 predicted protein [Populus trichocarpa] 0.936 0.939 0.778 1e-109
198400335221 50S ribosomal protein L5 [Camellia sinen 0.820 0.990 0.840 1e-108
>gi|255541698|ref|XP_002511913.1| 50S ribosomal protein L5, putative [Ricinus communis] gi|223549093|gb|EEF50582.1| 50S ribosomal protein L5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/265 (80%), Positives = 237/265 (89%), Gaps = 2/265 (0%)

Query: 1   MACPSLLHSSAS-SFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAE 59
           M+ PSLL SSA+ SF G+FP +SS   V+  Y NP N NGVVSV+A  G IVLVEKSEAE
Sbjct: 1   MSSPSLLQSSAAASFRGQFPIISSHPSVKVPYGNPRNGNGVVSVRAT-GEIVLVEKSEAE 59

Query: 60  KTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLAL 119
           KT RLKTTYL+KIVPLL EEFSY+NIHQVPKIEK+VVNCGIG+AAQNAKGLEAAMNDLAL
Sbjct: 60  KTYRLKTTYLQKIVPLLMEEFSYSNIHQVPKIEKVVVNCGIGEAAQNAKGLEAAMNDLAL 119

Query: 120 ITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNP 179
           ITGQRP+KTRARNSIATFKIREG+PLGIAVTLRGN+MYSFLDRLINLGLPRTRDFQGV+ 
Sbjct: 120 ITGQRPIKTRARNSIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVSQ 179

Query: 180 NSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
           NSFDGHGNYSIG+++QSVFPEIR+DALGK KG+DVCITTTAK D+EGQ+LLALMGMPFRE
Sbjct: 180 NSFDGHGNYSIGIRDQSVFPEIRFDALGKAKGMDVCITTTAKNDQEGQKLLALMGMPFRE 239

Query: 240 GGGPANLIRKKKLKAHHFDSKSKGK 264
             G   L RKKKLK HHFDSKS+G+
Sbjct: 240 SSGTTVLQRKKKLKKHHFDSKSRGR 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454373|ref|XP_002278820.1| PREDICTED: 50S ribosomal protein L5, chloroplastic [Vitis vinifera] gi|297745362|emb|CBI40442.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255647208|gb|ACU24072.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356568435|ref|XP_003552416.1| PREDICTED: 50S ribosomal protein L5, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297810025|ref|XP_002872896.1| ribosomal protein L5 family protein [Arabidopsis lyrata subsp. lyrata] gi|297318733|gb|EFH49155.1| ribosomal protein L5 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15234136|ref|NP_192040.1| 50S ribosomal protein L5 [Arabidopsis thaliana] gi|50400725|sp|O04603.1|RK5_ARATH RecName: Full=50S ribosomal protein L5, chloroplastic; Flags: Precursor gi|2191128|gb|AAB61015.1| belongs to the L5P family of ribosomal proteins [Arabidopsis thaliana] gi|7267628|emb|CAB80940.1| putative L5 ribosomal protein [Arabidopsis thaliana] gi|15810311|gb|AAL07043.1| putative L5 ribosomal protein [Arabidopsis thaliana] gi|21281101|gb|AAM45056.1| putative L5 ribosomal protein [Arabidopsis thaliana] gi|21592367|gb|AAM64318.1| putative L5 ribosomal protein [Arabidopsis thaliana] gi|332656607|gb|AEE82007.1| 50S ribosomal protein L5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356531959|ref|XP_003534543.1| PREDICTED: 50S ribosomal protein L5, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|118489599|gb|ABK96601.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224067846|ref|XP_002302562.1| predicted protein [Populus trichocarpa] gi|118485785|gb|ABK94741.1| unknown [Populus trichocarpa] gi|222844288|gb|EEE81835.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|198400335|gb|ACH87176.1| 50S ribosomal protein L5 [Camellia sinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2124978262 AT4G01310 [Arabidopsis thalian 0.970 0.988 0.740 6.2e-101
UNIPROTKB|Q3A9S8179 rplE "50S ribosomal protein L5 0.655 0.977 0.548 3.5e-52
TIGR_CMR|CHY_2297179 CHY_2297 "ribosomal protein L5 0.655 0.977 0.548 3.5e-52
TIGR_CMR|BA_0122179 BA_0122 "ribosomal protein L5" 0.662 0.988 0.553 1.9e-51
TIGR_CMR|GSU_2845179 GSU_2845 "ribosomal protein L5 0.659 0.983 0.579 4e-51
UNIPROTKB|Q9KNZ6179 rplE "50S ribosomal protein L5 0.662 0.988 0.548 1.2e-49
TIGR_CMR|VC_2584179 VC_2584 "ribosomal protein L5" 0.662 0.988 0.548 1.2e-49
TIGR_CMR|CPS_0613181 CPS_0613 "ribosomal protein L5 0.662 0.977 0.519 6e-48
TIGR_CMR|DET_0486179 DET_0486 "ribosomal protein L5 0.617 0.921 0.551 6e-48
UNIPROTKB|P62403187 rplE "50S ribosomal protein L5 0.662 0.946 0.519 1.2e-47
TAIR|locus:2124978 AT4G01310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 197/266 (74%), Positives = 228/266 (85%)

Query:     1 MACPSLLHSSASSFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEK 60
             MA PSLL SSASSFHGRF  L++ S  R   P   NV     VK +A G VLVEKSEAEK
Sbjct:     1 MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEK 55

Query:    61 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALI 120
             T RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALI
Sbjct:    56 TQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALI 115

Query:   121 TGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPN 180
             TGQ+P+KTRAR SIATFKIRE +PLGIAVTLRG++MYSFLDRLINL LPRTRDFQGV+P+
Sbjct:   116 TGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPS 175

Query:   181 SFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREG 240
             SFDG+GNYSIGVK+Q VFPEIR+DA+GK +G+DVCI+TTAK+D+EGQ+LLALMGMPFREG
Sbjct:   176 SFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFREG 235

Query:   241 GGPAN--LIRKKKLKAHHFDSKSKGK 264
             GG +   ++RKKKLK+HHFD+K KGK
Sbjct:   236 GGGSTGAIVRKKKLKSHHFDAKGKGK 261
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
UNIPROTKB|Q3A9S8 rplE "50S ribosomal protein L5" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2297 CHY_2297 "ribosomal protein L5" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0122 BA_0122 "ribosomal protein L5" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2845 GSU_2845 "ribosomal protein L5" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNZ6 rplE "50S ribosomal protein L5" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2584 VC_2584 "ribosomal protein L5" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0613 CPS_0613 "ribosomal protein L5" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0486 DET_0486 "ribosomal protein L5" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P62403 rplE "50S ribosomal protein L5" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B7GJ79RL5_ANOFWNo assigned EC number0.58750.66290.9888yesno
B0K5Q5RL5_THEPXNo assigned EC number0.59420.65540.9776yesno
B8G6R3RL5_CHLADNo assigned EC number0.57540.67040.9944yesno
Q110B9RL5_TRIEINo assigned EC number0.60.65540.9668yesno
C5D3S9RL5_GEOSWNo assigned EC number0.57620.66290.9888yesno
A4IJK0RL5_GEOTNNo assigned EC number0.57060.66290.9888yesno
Q7NEG4RL5_GLOVINo assigned EC number0.56490.66290.9725yesno
A2CC40RL5_PROM3No assigned EC number0.60.65540.9776yesno
Q927L9RL5_LISMONo assigned EC number0.57060.66290.9888yesno
B1XJS7RL5_SYNP2No assigned EC number0.60450.66290.9779yesno
B8G1X8RL5_DESHDNo assigned EC number0.54490.66660.9944yesno
Q5L411RL5_GEOKANo assigned EC number0.58750.66290.9888yesno
Q8R7W6RL5_THETNNo assigned EC number0.60.65540.9776yesno
B0C1E5RL5_ACAM1No assigned EC number0.59770.67040.9889yesno
A5GIT3RL5_SYNPWNo assigned EC number0.60.65540.9776yesno
Q9ZST0RK5_ORYSJNo assigned EC number0.66660.80890.7741yesno
A0ALV6RL5_LISW6No assigned EC number0.57060.66290.9888yesno
Q0AUJ2RL5_SYNWWNo assigned EC number0.61010.66290.9943yesno
Q8DMM0RL5_THEEBNo assigned EC number0.62140.66290.9779yesno
C0ZIJ2RL5_BREBNNo assigned EC number0.55930.66290.9833yesno
Q7ANU7RL5_LISINNo assigned EC number0.57060.66290.9888yesno
B5YDV5RL5_DICT6No assigned EC number0.59090.65910.9832yesno
A8MLF2RL5_ALKOONo assigned EC number0.57950.65910.9832yesno
Q2JQN2RL5_SYNJANo assigned EC number0.59420.65540.9722yesno
B2ITP3RL5_NOSP7No assigned EC number0.59210.67040.9835yesno
Q250M0RL5_DESHYNo assigned EC number0.54490.66660.9944yesno
P82192RK5_SPIOLNo assigned EC number0.75220.82020.9954N/Ano
Q71WF8RL5_LISMFNo assigned EC number0.57060.66290.9888yesno
Q8YPJ1RL5_NOSS1No assigned EC number0.61450.67040.9835yesno
B0KCL2RL5_THEP3No assigned EC number0.59420.65540.9776yesno
Q3MFA9RL5_ANAVTNo assigned EC number0.60890.67040.9835yesno
Q2JIL5RL5_SYNJBNo assigned EC number0.58850.65540.9722yesno
C1KZG8RL5_LISMCNo assigned EC number0.57060.66290.9888yesno
B0JHZ1RL5_MICANNo assigned EC number0.63630.65910.9832yesno
B7K236RL5_CYAP8No assigned EC number0.60220.65910.9777yesno
A5GVX2RL5_SYNR3No assigned EC number0.58850.65540.9776yesno
B7KHZ9RL5_CYAP7No assigned EC number0.62560.67040.9944yesno
O04603RK5_ARATHNo assigned EC number0.74060.97000.9885yesno
Q7V533RL5_PROMMNo assigned EC number0.60570.65540.9776yesno
B8FES3RL5_DESAANo assigned EC number0.55110.65910.9832yesno
B8HMR6RL5_CYAP4No assigned EC number0.64400.66290.9833yesno
B8DB20RL5_LISMHNo assigned EC number0.57060.66290.9888yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026943001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
•  •• • 0.996
GSVIVG00026031001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)
•  •• • 0.996
GSVIVG00023012001
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)
• ••• • 0.995
GSVIVG00035271001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)
•  •• • 0.995
GSVIVG00035173001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)
•  •• • 0.992
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
• ••• • 0.992
GSVIVG00028331001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (166 aa)
• ••• • 0.991
GSVIVG00011509001
SubName- Full=Chromosome chr10 scaffold_312, whole genome shotgun sequence; (129 aa)
•  •• • 0.991
GSVIVG00024151001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (278 aa)
• ••• • 0.991
GSVIVG00030345001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (262 aa)
•  •• • 0.990

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
PRK00010179 PRK00010, rplE, 50S ribosomal protein L5; Validate 1e-112
CHL00078181 CHL00078, rpl5, ribosomal protein L5 1e-107
COG0094180 COG0094, RplE, Ribosomal protein L5 [Translation, 2e-92
pfam0067395 pfam00673, Ribosomal_L5_C, ribosomal L5P family C- 3e-50
PRK04219177 PRK04219, rpl5p, 50S ribosomal protein L5P; Review 2e-29
pfam0028156 pfam00281, Ribosomal_L5, Ribosomal protein L5 4e-19
PTZ00156172 PTZ00156, PTZ00156, 60S ribosomal protein L11; Pro 2e-09
>gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated Back     alignment and domain information 
 Score =  319 bits (821), Expect = e-112
 Identities = 106/177 (59%), Positives = 135/177 (76%)

Query: 63  RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
           RLK  Y E+IVP L +EF Y N+ QVPK+EKIV+N G+G+A  + K LE A+ DL LITG
Sbjct: 3   RLKEKYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITG 62

Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
           Q+PV T+A+ SIA FK+REG P+G  VTLRG  MY FLDRLIN+ LPR RDF+G++P SF
Sbjct: 63  QKPVVTKAKKSIAGFKLREGMPIGCKVTLRGERMYEFLDRLINIALPRVRDFRGLSPKSF 122

Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
           DG GNY++G+KEQ +FPEI YD + K +G+D+ I TTAKTD+E + LL   G PFR+
Sbjct: 123 DGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTAKTDEEARALLKAFGFPFRK 179

Length = 179
>gnl|CDD|214356 CHL00078, rpl5, ribosomal protein L5 Back     alignment and domain information
>gnl|CDD|223172 COG0094, RplE, Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201383 pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus Back     alignment and domain information
>gnl|CDD|235259 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>gnl|CDD|109342 pfam00281, Ribosomal_L5, Ribosomal protein L5 Back     alignment and domain information
>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
COG0094180 RplE Ribosomal protein L5 [Translation, ribosomal 100.0
PRK00010179 rplE 50S ribosomal protein L5; Validated 100.0
CHL00078181 rpl5 ribosomal protein L5 100.0
KOG0398278 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PTZ00156172 60S ribosomal protein L11; Provisional 100.0
PRK04219177 rpl5p 50S ribosomal protein L5P; Reviewed 100.0
PF0067395 Ribosomal_L5_C: ribosomal L5P family C-terminus; I 100.0
KOG0397176 consensus 60S ribosomal protein L11 [Translation, 99.95
PF0028156 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR0 99.82
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-70  Score=473.94  Aligned_cols=179  Identities=58%  Similarity=0.987  Sum_probs=177.2

Q ss_pred             hhhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCcc
Q 024440           61 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIR  140 (267)
Q Consensus        61 ~~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiR  140 (267)
                      |+||+.+|.+.|.+.|+++|+|+|+|++|+|+|||||||+|++..|.+.|+.|..+|+.||||||++|+||+||++||||
T Consensus         1 ~~rlk~~y~~~i~~~l~~~~~y~n~M~~P~i~KVvvNmGvGEa~~d~~~l~~A~~~L~~ItGQKPv~tkAkksia~FkiR   80 (180)
T COG0094           1 MNRLKEKYKDEIVPALIKKFGYSNPMQVPRIEKVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITKAKKSIAGFKIR   80 (180)
T ss_pred             CchhhHHHHHHHhHHHHHhhccCCccccceeEEEEEEccchhhhhchHHHHHHHHHHHHHhCCCceeeehhccccccccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeec
Q 024440          141 EGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTA  220 (267)
Q Consensus       141 kG~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTta  220 (267)
                      +||||||||||||++||+||++|++++|||+|||+|++.+|||++|||+|||+||++||||+||+.++++||||+|+|+|
T Consensus        81 ~g~pIG~KVTLRg~rm~eFL~rl~~i~lPrvrdfrGls~~sFDg~GN~sfGI~E~i~FPei~yD~~~~i~GMdi~ivtta  160 (180)
T COG0094          81 EGMPIGVKVTLRGERMYEFLDRLLNIALPRVRDFRGLSPKSFDGRGNYSFGIKEQIIFPEIDYDPIIGIRGMDITIVTTA  160 (180)
T ss_pred             CCCeeeEEEEEchHHHHHHHHHHHHhhccccccccCCCccccCCCCceEecchheeecCccccCccCCccCceEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCcccc
Q 024440          221 KTDKEGQRLLALMGMPFRE  239 (267)
Q Consensus       221 kt~~ea~~LLs~~g~PF~~  239 (267)
                      ++|.|++.||+.++|||..
T Consensus       161 ~~d~e~R~ll~~~~~Pf~~  179 (180)
T COG0094         161 KGDVEARALLSAFGIPFRK  179 (180)
T ss_pred             CChHHHHHHHHhcCCCCCC
Confidence            9999999999999999975

>PRK00010 rplE 50S ribosomal protein L5; Validated Back     alignment and domain information
>CHL00078 rpl5 ribosomal protein L5 Back     alignment and domain information
>KOG0398 consensus Mitochondrial/chloroplast ribosomal protein L5/L7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00156 60S ribosomal protein L11; Provisional Back     alignment and domain information
>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3bbo_H220 Homology Model For The Spinach Chloroplast 50s Subu 3e-98
1iq4_A179 5s-Rrna Binding Ribosomal Protein L5 From Bacillus 4e-61
1nkw_D180 Crystal Structure Of The Large Ribosomal Subunit Fr 9e-58
1pnu_D178 Crystal Structure Of A Streptomycin Dependent Ribos 1e-57
2j01_G182 Structure Of The Thermus Thermophilus 70s Ribosome 9e-55
3fin_G181 T. Thermophilus 70s Ribosome In Complex With Mrna, 9e-55
1vsa_E182 Crystal Structure Of A 70s Ribosome-Trna Complex Re 1e-54
3mrz_F181 Recognition Of The Amber Stop Codon By Release Fact 1e-54
1mji_A182 Detailed Analysis Of Rna-Protein Interactions Withi 1e-53
1vs6_F179 Crystal Structure Of The Bacterial Ribosome From Es 1e-48
1p85_D178 Real Space Refined Coordinates Of The 50s Subunit F 1e-48
3ofr_F177 Crystal Structure Of The E. Coli Ribosome Bound To 1e-48
2gya_D177 Structure Of The 50s Subunit Of A Pre-Translocation 1e-48
1s72_D177 Refined Crystal Structure Of The Haloarcula Marismo 4e-19
1ffk_D176 Crystal Structure Of The Large Ribosomal Subunit Fr 5e-19
3ow2_D165 Crystal Structure Of Enhanced Macrolide Bound To 50 7e-19
3j21_E186 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-17
1s1i_J173 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-09
3izs_E174 Localization Of The Large Subunit Ribosomal Protein 3e-09
3jyw_J151 Structure Of The 60s Proteins For Eukaryotic Riboso 4e-09
2noq_H165 Structure Of Ribosome-Bound Cricket Paralysis Virus 4e-09
4a17_D172 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-08
2zkr_d178 Structure Of A Mammalian Ribosomal 60s Subunit With 5e-07
3izr_E180 Localization Of The Large Subunit Ribosomal Protein 7e-06
3zf7_L194 High-resolution Cryo-electron Microscopy Structure 5e-05
>pdb|3BBO|H Chain H, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 220 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (908), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 167/222 (75%), Positives = 196/222 (88%), Gaps = 3/222 (1%)
Query: 46  AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQ 105
           AAG  V V+K+EAE   RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+Q
Sbjct: 1   AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQ 60
Query: 106 NAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLIN 165
           NAKGL+AA+N+LALITGQRPVKT+A+ SIA FK+REG  LGIAVTLRGN+MYSFLDRLIN
Sbjct: 61  NAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLIN 120
Query: 166 LGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKE 225
           L LPRTRDFQGVNPNSFDGHGNYS+G +EQSVFPEI+ + +GK +G+DVCITTTAKTDKE
Sbjct: 121 LALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKE 180
Query: 226 GQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGKSRR 267
             +LL+LMGMPFREG GP+ L+RKKKLK+HHFD+K   K RR
Sbjct: 181 AYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK---KGRR 219
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus Stearothermophilus Length = 179 Back     alignment and structure
>pdb|1NKW|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 180 Back     alignment and structure
>pdb|1PNU|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 178 Back     alignment and structure
>pdb|2J01|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 182 Back     alignment and structure
>pdb|3FIN|G Chain G, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 181 Back     alignment and structure
>pdb|1VSA|E Chain E, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 182 Back     alignment and structure
>pdb|3MRZ|F Chain F, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 181 Back     alignment and structure
>pdb|1MJI|A Chain A, Detailed Analysis Of Rna-Protein Interactions Within The Bacterial Ribosomal Protein L55S RRNA COMPLEX Length = 182 Back     alignment and structure
>pdb|1VS6|F Chain F, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 Back     alignment and structure
>pdb|1P85|D Chain D, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 Back     alignment and structure
>pdb|3OFR|F Chain F, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. Length = 177 Back     alignment and structure
>pdb|2GYA|D Chain D, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 177 Back     alignment and structure
>pdb|1S72|D Chain D, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 176 Back     alignment and structure
>pdb|3OW2|D Chain D, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 165 Back     alignment and structure
>pdb|3J21|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 186 Back     alignment and structure
>pdb|1S1I|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 173 Back     alignment and structure
>pdb|3IZS|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 174 Back     alignment and structure
>pdb|3JYW|J Chain J, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 151 Back     alignment and structure
>pdb|2NOQ|H Chain H, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 165 Back     alignment and structure
>pdb|4A17|D Chain D, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 172 Back     alignment and structure
>pdb|2ZKR|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 178 Back     alignment and structure
>pdb|3IZR|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 180 Back     alignment and structure
>pdb|3ZF7|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 1e-133
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 1e-110
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 1e-110
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 1e-109
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 7e-67
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 6e-65
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 6e-64
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 7e-58
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 220 Back     alignment and structure
 Score =  373 bits (961), Expect = e-133
 Identities = 164/219 (74%), Positives = 194/219 (88%)

Query: 46  AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQ 105
           AAG  V V+K+EAE   RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+Q
Sbjct: 1   AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQ 60

Query: 106 NAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLIN 165
           NAKGL+AA+N+LALITGQRPVKT+A+ SIA FK+REG  LGIAVTLRGN+MYSFLDRLIN
Sbjct: 61  NAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLIN 120

Query: 166 LGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKE 225
           L LPRTRDFQGVNPNSFDGHGNYS+G +EQSVFPEI+ + +GK +G+DVCITTTAKTDKE
Sbjct: 121 LALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKE 180

Query: 226 GQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGK 264
             +LL+LMGMPFREG GP+ L+RKKKLK+HHFD+K   +
Sbjct: 181 AYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAKKGRR 219
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Length = 182 Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Length = 179 Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F 3orb_F* ... Length = 177 Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Length = 177 Back     alignment and structure
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Length = 172 Back     alignment and structure
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 178 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 100.0
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 100.0
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 100.0
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 100.0
3j21_E186 50S ribosomal protein L5P; archaea, archaeal, KINK 100.0
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 100.0
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 100.0
3iz5_E180 60S ribosomal protein L11 (L5P); eukaryotic riboso 100.0
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 100.0
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
Probab=100.00  E-value=3.8e-82  Score=564.38  Aligned_cols=214  Identities=76%  Similarity=1.218  Sum_probs=174.5

Q ss_pred             cceeEEeeCCchhhhhhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcE
Q 024440           47 AGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPV  126 (267)
Q Consensus        47 ~~~~~~~~~~~~~~~~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv  126 (267)
                      +|++|||+++|+++|+||+++|+++|+|+|+++|+|+|+|++|+|+||+||+|+|++.+|++.|+.|+.+|++||||+|+
T Consensus         2 ~~~~~~~~~~~~~~m~rLk~~Y~~~v~~~L~~k~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv   81 (220)
T 3bbo_H            2 AGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPV   81 (220)
T ss_dssp             ----------------CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCC
T ss_pred             CcceEEecccchhhHHHHHHHHHHHHHHHHHHHhcCCCcccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecccCCCCccCCceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCC
Q 024440          127 KTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL  206 (267)
Q Consensus       127 ~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~  206 (267)
                      +|+||++|++||||+||||||+|||||++||+|||||+++||||+|||+|++.++||++|||+|||+||++||||+||++
T Consensus        82 ~tkAKksIa~FkiRkg~pIG~kVTLRG~~MyeFLdrll~iaLPRirdf~Gl~~~sFD~~GN~sfGi~e~~~FPEI~yD~~  161 (220)
T 3bbo_H           82 KTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIV  161 (220)
T ss_dssp             CCBCCSCCCSSCCCTTCBCCCCCEECTHHHHHHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSC
T ss_pred             EeecccccccccccCCCeeEEEEEEccHHHHHHHHHHHHHhccccccccccCccccCCCceEEEeccccccCCCcccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEeecCChHHHHHHHHhcCCccccCCCCchhHhHHhHhhccCCCc
Q 024440          207 GKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSK  260 (267)
Q Consensus       207 ~~i~GmdItivTtakt~~ea~~LLs~~g~PF~~~~~~~~~~~~~~~~~~~~~~~  260 (267)
                      ++++||||+|+|+|+||+||++||++|||||.+..+++++.+|||+|+||||+|
T Consensus       162 ~~i~GmdItivTtA~td~ea~~LL~~~g~PF~~~~~~~~~~~~~~~~~~~~~~~  215 (220)
T 3bbo_H          162 GKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK  215 (220)
T ss_dssp             SSCCCEEEEEEESCSSGGGTHHHHHTTTCCC-----------------------
T ss_pred             CCcccceEEEEeccCCHHHHHHHHHHCCCCEecCCccccchhhcccccCCcchh
Confidence            999999999999999999999999999999999877778889999999999999
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ... Back     alignment and structure
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1mjia_180 d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermo 8e-74
d1iq4a_179 d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stear 3e-73
d2zjrd1177 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococc 2e-71
d2gycd1177 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherich 1e-68
d1vqod1165 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon 6e-47
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Thermus thermophilus [TaxId: 274]

 Score =  221 bits (564), Expect = 8e-74
 Identities = 91/177 (51%), Positives = 135/177 (76%)

Query: 63  RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
            LK  Y E++ P L   F Y N+ +VP++EK+V+N G+G+A ++A+ LE A  +LALITG
Sbjct: 4   ALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITG 63

Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
           Q+P  TRA+ SI+ FK+R+G P+G+ VTLR + M+ FL++L+N+ LPR RDF+G+NPNSF
Sbjct: 64  QKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSF 123

Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
           DG GNY++G++EQ +FPEI YD +   +G+D+ + TTA+TD+E + LL L+G PFR+
Sbjct: 124 DGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK 180
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Length = 179 Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Length = 177 Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Length = 177 Back     information, alignment and structure
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1mjia_180 Ribosomal protein L5 {Thermus thermophilus [TaxId: 100.0
d1iq4a_179 Ribosomal protein L5 {Bacillus stearothermophilus 100.0
d2zjrd1177 Ribosomal protein L5 {Deinococcus radiodurans [Tax 100.0
d2gycd1177 Ribosomal protein L5 {Escherichia coli [TaxId: 562 100.0
d1vqod1165 Ribosomal protein L5 {Archaeon Haloarcula marismor 100.0
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-69  Score=469.07  Aligned_cols=178  Identities=51%  Similarity=0.950  Sum_probs=176.0

Q ss_pred             hhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccC
Q 024440           62 GRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIRE  141 (267)
Q Consensus        62 ~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRk  141 (267)
                      .||+.+|+++|+++|+++++|+|+|++|+|+||+||+|+|++.+|++.++.|..+|++||||+|++|+||++|++||+|+
T Consensus         3 ~rLk~~Y~~~i~~~L~~k~~~~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksia~FklRk   82 (180)
T d1mjia_           3 VALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRK   82 (180)
T ss_dssp             CHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCccccceeeEEEEECCCCccccchHHHHHHHHHHHhhccceEEEEecccccccceeec
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecC
Q 024440          142 GEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAK  221 (267)
Q Consensus       142 G~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtak  221 (267)
                      |+|+||+|||||++||+||++|+++||||||||+|++.++||++|||+|||+|+++||||+||.+++++||||||||+|+
T Consensus        83 g~piG~kvTLRg~~m~~FL~rli~i~lprirdf~g~~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTta~  162 (180)
T d1mjia_          83 GMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAE  162 (180)
T ss_dssp             CSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEESCS
T ss_pred             CCceeEEEeecHHHHHHHHHHHHHHHhhheeccccCCcccccCceeEEecchheeeccccccccccCcCcceEEEEeCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCcccc
Q 024440          222 TDKEGQRLLALMGMPFRE  239 (267)
Q Consensus       222 t~~ea~~LLs~~g~PF~~  239 (267)
                      +++||++||++|||||.+
T Consensus       163 ~~~ea~~Lls~~g~Pf~~  180 (180)
T d1mjia_         163 TDEEARALLELLGFPFRK  180 (180)
T ss_dssp             SHHHHHHHHHHHTCCBCC
T ss_pred             CHHHHHHHHHHcCCCccC
Confidence            999999999999999974
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure