Citrus Sinensis ID: 024448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEVKSYQSQAESLLKEYiladplvpytsIVGSIFACKMVYDLAQLISAVhfksyssfsniqrvewsnrAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITfrsafpstftLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISEtttpginlRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Flexible Loop (DISEMBL)
MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISetttpginlRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Low Complexity Region (SEG)
MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Disordered region (IsUnstruct)
************LLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL****
Disordered Region (DISOPRED)
**********ESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA***
Disordered Region (DISEMBL)
*********AESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Disordered Region (DISPRO)
MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q8CGF5	276	Transmembrane protein 56	yes	no	0.786	0.760	0.263	2e-17
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.786	0.801	0.261	5e-16
Q96MV1	263	Transmembrane protein 56	yes	no	0.771	0.783	0.254	1e-14
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.898	0.930	0.258	3e-14
Q6P4N1	259	Transmembrane protein 56	no	no	0.883	0.911	0.254	8e-14
Q5XIY2	264	Transmembrane protein 56-	no	no	0.816	0.825	0.226	4e-12
Q550S9	257	Transmembrane protein 56	yes	no	0.599	0.622	0.298	3e-10
Q550T0	258	Transmembrane protein 56	no	no	0.760	0.786	0.230	5e-09
Q1LXV8	242	Transmembrane protein 136	no	no	0.524	0.578	0.285	2e-05
Q6ZRR5	245	Transmembrane protein 136	no	no	0.520	0.567	0.275	2e-05

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 10/220 (4%)

Query: 53  SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
            Y+S S  +++EW++R +ST H++ +    LY  F+ +  + + L    T+ +       
Sbjct: 50  GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPLWGDPTYVN-----IN 104

Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETT 172
           +  + GY ++DL +I++ +  +G   ++IHH   + A    + T    +     L++E +
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164

Query: 173 TPGINLRWYLDKAGMKR-SRAYLINGILMFLAWLVVRILFF--MYIFYHIYLHVDQVKQC 229
           +P +N RW+ +     + S+A +INGILM + + +VRI+    MY F +     +   + 
Sbjct: 165 SPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGTEPYIRF 224

Query: 230 RTCVQILVFSVPVVLFIMNAVWFSKIVKGLVK--TLAKQQ 267
              +Q +     V+L +MN +W  KI KG +K  +L +Q+
Sbjct: 225 GFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVISLIRQE 264

Mus musculus (taxid: 10090)

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 53  SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
            +   S  Q++EW++R +S+ HA+ +    LY      L  D+ + +   +   F     
Sbjct: 37  GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYI-----LVYDDAVNADPVWGDPFMVKLN 91

Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETT 172
           + V+ GY ++DL +II+++  +G   +V HHL ++ A    +      ++    LI+E +
Sbjct: 92  VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAEFS 151

Query: 173 TPGINLRWYLDKAGM-KRSRAYLINGILMFLAWLVVRILFFMYIFYHIY--LHVDQVKQC 229
           TP +N RW+ +  G  K S   ++NG+LM +++ +VRI      +  ++     +   + 
Sbjct: 152 TPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFHRL 211

Query: 230 RTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
               Q       V L IMN +W  KI KG  K L  + 
Sbjct: 212 GLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVLYHRD 249

Xenopus laevis (taxid: 8355)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 10/216 (4%)

Query: 53  SYSSFSNIQRVEWSNRAISTVHAIFITAMSLY-FVFWSDLFLDNQLASLITFRSAFPSTF 111
            ++S S  +++EW++R +ST H++ +    LY F+F      D    +   +     +  
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLF------DEATKADPLWGGPSLANV 90

Query: 112 TLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISET 171
            + ++ GY ++DL +II ++  +G   +++HH  S+ A    +      +     L++E 
Sbjct: 91  NIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAEL 150

Query: 172 TTPGINLRWYLDKAGMKR-SRAYLINGILMFLAWLVVRILFFM--YIFYHIYLHVDQVKQ 228
           ++P +N RW+ +     + S+A +INGILM + + +VRI   +  Y F +     +   +
Sbjct: 151 SSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIR 210

Query: 229 CRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264
               +Q+      VVL +MN +W  KI KG +K ++
Sbjct: 211 LGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVIS 246

Homo sapiens (taxid: 9606)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 19  LADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSS----FSNIQRVEWSNRAISTVH 74
           + D L+ Y  + GS    ++++     IS   F  YSS     S  ++ EW +R +ST H
Sbjct: 1   MDDVLISYCVVTGSFLGFQLLF---SAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNH 57

Query: 75  AIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPAL 134
           A+ + +  LY      L  D+ + +   +   F     + ++ GY + DL ++  F+  +
Sbjct: 58  ALIVGSACLYI-----LAYDDAVNADPIWGDPFWVKMNVAITCGYLVQDLLLLARFWKVM 112

Query: 135 GGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSR-AY 193
                V HHL    +    +      ++    LISE +TP +N RW+ D  G  RS    
Sbjct: 113 RDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPV 172

Query: 194 LINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCV--QILVFSVPVVLFIMNAVW 251
           L+NG+ M L + +VRI      +  ++         R  +  Q+      VVL I+N  W
Sbjct: 173 LLNGLAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFW 232

Query: 252 FSKIVKGLVKTLAKQ 266
             KI +G  K +  +
Sbjct: 233 MYKIARGFYKVVKAK 247

Xenopus laevis (taxid: 8355)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 109/251 (43%), Gaps = 15/251 (5%)

Query: 23  LVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSS----FSNIQRVEWSNRAISTVHAIFI 78
            + Y  + GS    ++++    +IS   F  YSS     S  ++ EW +R +ST HA+ +
Sbjct: 6   FISYCVVTGSFLGFQLLF---SIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVV 62

Query: 79  TAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGME 138
            +  LY      L  D  + +   +   F     + ++ GY + DL ++  F+  +    
Sbjct: 63  GSGCLYI-----LAYDEAVNADPIWGDPFWVKMNVAITCGYLVHDLLLLARFWKVMRDPY 117

Query: 139 YVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSR-AYLING 197
            V HHL    +    +      ++    LISE +TP +N RW+ D  G  RS    L+NG
Sbjct: 118 MVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNG 177

Query: 198 ILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCV--QILVFSVPVVLFIMNAVWFSKI 255
           + M L + +VRI      +  ++         R  +  Q+      VVL I+N  W  KI
Sbjct: 178 LAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKI 237

Query: 256 VKGLVKTLAKQ 266
            +G  K +  +
Sbjct: 238 ARGFYKVVKAK 248

Xenopus tropicalis (taxid: 8364)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 42  LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
           ++ ++S+   + Y      +  +W++R +STVHA+ +    LY +++ D   ++ +    
Sbjct: 23  VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNEDPVW--- 79

Query: 102 TFRSAFPSTFTLGVSV--GYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREA 159
                 P+   L V++  GY   DL ++   +  +G + +V HHL ++ A    +     
Sbjct: 80  ----GDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVL 135

Query: 160 QFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLI-NGILMFLAWLVVRILFFMYIFYH 218
            ++    LISE +TP +N RW+ +     R+   ++ NGI M + + +VRI      +  
Sbjct: 136 PYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAK 195

Query: 219 IY--LHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQ 266
           ++  ++    ++    +Q+      V L I+N +W  KI +G  K +  +
Sbjct: 196 VFGIIYSPTFEKLGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGK 245

Danio rerio (taxid: 7955)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 42  LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
           L ++I  +  K+   F   +R+EW NR ISTV+AI  +A+S+Y +++++ ++ N L S  
Sbjct: 26  LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCLYYNE-WIVNSLRS-- 82

Query: 102 TFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHH---LLSIAATACAMLTRE 158
              ++  S F       YF+ D  +  ++   L     ++HH   LLS        L   
Sbjct: 83  ---TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGLAHH 139

Query: 159 AQF-YTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILF 211
               YT+    +E TTP INLR++L    +K    Y+ING+L+F+ +++ R+ +
Sbjct: 140 LLLSYTF----TEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRVFY 189

Dictyostelium discoideum (taxid: 44689)

>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum GN=tmem56a PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 104/217 (47%), Gaps = 14/217 (6%)

Query: 53  SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
           SYSS     ++EW+N+ ++T+ +I   ++S Y ++    ++ N++ S         S F 
Sbjct: 44  SYSS-----KIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTSTCAL-----SDFI 93

Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLS--IAATACAMLTREAQFYTYMVLISE 170
           L     YFL D   +I +Y  L     +IHHL+   ++     +  ++        L+ E
Sbjct: 94  LKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKVHLTLLYFLLFE 153

Query: 171 TTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCR 230
            T P I+++W+L    ++    Y ING +M   ++ +R ++       IY  ++   +  
Sbjct: 154 ITNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRDIYVPIKVVKIY--INGYTELN 211

Query: 231 TCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           +    ++F    ++ I+N  W   ++KG++K L++ +
Sbjct: 212 SIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTK 248

Dictyostelium discoideum (taxid: 44689)

>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 64  EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLAD 123
           EW+ R ++  H I I  ++ Y  F +  +      +     + +    TL +S+GYFL D
Sbjct: 32  EWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGT----ENTYFQILTLVLSLGYFLFD 87

Query: 124 LGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLI-SETTTPGINLRWYL 182
           +   ++F     G   + HH +SI     A+   E+   T  VL  SE T P +  RW+L
Sbjct: 88  MAWCVYFRTE--GPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFL 145

Query: 183 DKAGMKRSRAYLINGILMFLAWLVVRI 209
            + G   S A  +  +L  L +  VRI
Sbjct: 146 KRMGCYDSLAGDVVDLLFILLFASVRI 172

Danio rerio (taxid: 7955)

>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 21/160 (13%)

Query: 36  CKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDN 95
           C +   L+  IS  H   + S+      EWS R ++  H +    +S Y  F    +   
Sbjct: 11  CSLCGWLSLYISFCHLNKHRSY------EWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFT 64

Query: 96  QLASLITFRSAFPST----FTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATA 151
              S        P+T      L +++GYF+ DLG  ++F     G   + HH LSI    
Sbjct: 65  HPGS--------PNTPLQVHVLCLTLGYFIFDLGWCVYFQSE--GALMLAHHTLSILGII 114

Query: 152 CAMLTREAQFYTYMVLI-SETTTPGINLRWYLDKAGMKRS 190
            A++  E+      VL  SE T P + +RW+L + G   S
Sbjct: 115 MALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHS 154

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
363814384	274	uncharacterized protein LOC100817391 [Gl	1.0	0.974	0.696	1e-108
356501437	268	PREDICTED: transmembrane protein 56-B-li	1.0	0.996	0.700	1e-108
225446785	267	PREDICTED: transmembrane protein 56-B [V	1.0	1.0	0.726	1e-108
359484042	275	PREDICTED: transmembrane protein 56-like	1.0	0.970	0.666	1e-104
357494103	274	Transmembrane protein 56 [Medicago trunc	1.0	0.974	0.700	1e-104
296085343	267	unnamed protein product [Vitis vinifera]	1.0	1.0	0.666	1e-104
388490528	274	unknown [Medicago truncatula]	1.0	0.974	0.692	1e-102
356526956	274	PREDICTED: transmembrane protein 56-B-li	0.988	0.963	0.674	1e-102
255558686	266	conserved hypothetical protein [Ricinus	0.996	1.0	0.685	1e-101
224085397	267	predicted protein [Populus trichocarpa]	1.0	1.0	0.689	1e-100

>gi|363814384|ref|NP_001242831.1| uncharacterized protein LOC100817391 [Glycine max] gi|255636574|gb|ACU18625.1| unknown [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 225/267 (84%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M+ KSYQ++A   +KEY+LADPL+PYTSI+G IFACKMVYDL QL S VHFKSYSS + I
Sbjct: 8   MKFKSYQNRANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTVHFKSYSSLTRI 67

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QRVEW+NR++ST+HAIFIT MSLY VF S+L+ DNQ + LITFRS+  STF LGVSVGYF
Sbjct: 68  QRVEWNNRSMSTIHAIFITTMSLYLVFCSNLYSDNQSSELITFRSSSSSTFALGVSVGYF 127

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +ADLGMI WF+P+LGG EYVIHHLLS+ A A +ML+ E Q YTYMVLISETTTPGINLRW
Sbjct: 128 IADLGMIFWFFPSLGGHEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETTTPGINLRW 187

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMK+S+AYLING+++F+AWLV RIL F+Y+FYH+YLH DQ++Q     Q+LV  V
Sbjct: 188 YLDAAGMKKSKAYLINGVVIFIAWLVARILLFVYMFYHVYLHFDQIEQMHAFGQVLVIVV 247

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P+ L +MN +WFSKI+KGL KTLAK+Q
Sbjct: 248 PLALSVMNLIWFSKIIKGLRKTLAKRQ 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501437|ref|XP_003519531.1| PREDICTED: transmembrane protein 56-B-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 225/267 (84%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           ++ KSYQ+QA   LKEY+LADPL+PYTSI+G IFACKMVYDL QL S VHFKSYSS + I
Sbjct: 2   VKFKSYQNQANLFLKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTVHFKSYSSLTRI 61

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QRVEW+NR++ST+HAIFIT +SLY VF S+L+ DNQL+ LITFRS+  STF LGVSVGYF
Sbjct: 62  QRVEWNNRSMSTIHAIFITTISLYLVFCSNLYSDNQLSELITFRSSSSSTFALGVSVGYF 121

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +ADLGMI WF+P+LGG EYVIHHLLS+ A + +MLT E Q YTYMVLISETTTPGINLRW
Sbjct: 122 IADLGMIFWFFPSLGGYEYVIHHLLSLVAVSFSMLTGEGQLYTYMVLISETTTPGINLRW 181

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMK+S AYLING+++F+AWLV RIL F+Y+FYH+YLH DQ++Q     Q+LV  V
Sbjct: 182 YLDAAGMKKSNAYLINGVVIFIAWLVARILLFVYMFYHVYLHFDQIEQMHVFGQMLVIVV 241

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P+ L +MN +WFSKI+KGL KTLAK+Q
Sbjct: 242 PLALSVMNLIWFSKIIKGLRKTLAKRQ 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446785|ref|XP_002283175.1| PREDICTED: transmembrane protein 56-B [Vitis vinifera] gi|302143515|emb|CBI22076.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/267 (72%), Positives = 223/267 (83%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           ME+KSYQ+QAE+LLKEY+LAD  +PY SI+G + ACKMVYDL QLISAVHFKS+SS S +
Sbjct: 1   MEIKSYQNQAEALLKEYVLADSFIPYASIIGGLVACKMVYDLTQLISAVHFKSFSSLSKV 60

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR EW+NR+IST HAIFIT MSLYFVFWSDL+ D  LA  +TFRS+  STF+LGVSVGYF
Sbjct: 61  QRNEWNNRSISTFHAIFITVMSLYFVFWSDLYSDELLAGFVTFRSSSLSTFSLGVSVGYF 120

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           LADLGMI WFYP+LGGMEYV+HHLLSIAA A AMLT E Q YTYMVLISETTTPGINLRW
Sbjct: 121 LADLGMICWFYPSLGGMEYVVHHLLSIAAVAYAMLTGEGQLYTYMVLISETTTPGINLRW 180

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMKRS AY++NG+++F AWLV RIL F+Y+FYHIYLH DQVKQ       LV  V
Sbjct: 181 YLDVAGMKRSGAYVMNGVVIFFAWLVARILLFIYLFYHIYLHYDQVKQMHNIGLFLVVVV 240

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P VL +MN +WF+KI+KGL KTL K+Q
Sbjct: 241 PSVLAVMNLMWFAKIIKGLKKTLTKRQ 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484042|ref|XP_002263050.2| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 216/267 (80%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M +K+YQ+QAE L+K+Y+LADP +PYTSI+  +FACKMVYDL QLIS  +FKSY+  + I
Sbjct: 9   MAIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFKSYAGLTKI 68

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NR++STVHA FI A+SLYFVFWSDLF D++LA L+TFRS+  STF LGVSVGYF
Sbjct: 69  QRIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFGLGVSVGYF 128

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           LAD+GMI W YP+LGG+EY++HH LS  A A AM++ E Q YTYMVLISE TTP IN+RW
Sbjct: 129 LADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVTTPEINMRW 188

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMKRS AYLINGI++F  WLV R+L F+Y+FYH+YLH DQVKQ       LVF V
Sbjct: 189 YLDTAGMKRSSAYLINGIVIFFGWLVARVLLFVYMFYHVYLHYDQVKQMHIFGFFLVFMV 248

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P VL IMN +WF KI+KGL KTL K+Q
Sbjct: 249 PAVLGIMNLMWFGKIIKGLKKTLTKRQ 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494103|ref|XP_003617340.1| Transmembrane protein 56 [Medicago truncatula] gi|355518675|gb|AET00299.1| Transmembrane protein 56 [Medicago truncatula]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 224/267 (83%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M+ KSYQ+QA   +KEY+LADPL+PYTSI+G IFACKMVYDL QL S +HFKSYSS + I
Sbjct: 8   MKFKSYQNQANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTIHFKSYSSLTRI 67

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NRA+ST+H+IFIT MSLY VF S+L+ D++ A L+T RS+  STF LGVSVGYF
Sbjct: 68  QRIEWNNRAMSTIHSIFITTMSLYLVFCSNLYSDSESAELLTERSSALSTFALGVSVGYF 127

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +ADLGMI WF+PALGG EYVIHHL S+ A A +ML+ E Q YTYMVLISETTTPGINLRW
Sbjct: 128 MADLGMIFWFFPALGGYEYVIHHLFSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRW 187

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMKRS+AYLING+++F+AWLV RIL F+Y+FYH YLH DQV+Q     QILV  V
Sbjct: 188 YLDVAGMKRSKAYLINGVVIFIAWLVARILLFVYMFYHAYLHFDQVQQMHPFGQILVVVV 247

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           PVVL +MN +WFSKI+KGL+KTLAK+Q
Sbjct: 248 PVVLSVMNLIWFSKIIKGLMKTLAKRQ 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085343|emb|CBI29075.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 216/267 (80%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M +K+YQ+QAE L+K+Y+LADP +PYTSI+  +FACKMVYDL QLIS  +FKSY+  + I
Sbjct: 1   MAIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFKSYAGLTKI 60

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NR++STVHA FI A+SLYFVFWSDLF D++LA L+TFRS+  STF LGVSVGYF
Sbjct: 61  QRIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFGLGVSVGYF 120

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           LAD+GMI W YP+LGG+EY++HH LS  A A AM++ E Q YTYMVLISE TTP IN+RW
Sbjct: 121 LADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVTTPEINMRW 180

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMKRS AYLINGI++F  WLV R+L F+Y+FYH+YLH DQVKQ       LVF V
Sbjct: 181 YLDTAGMKRSSAYLINGIVIFFGWLVARVLLFVYMFYHVYLHYDQVKQMHIFGFFLVFMV 240

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P VL IMN +WF KI+KGL KTL K+Q
Sbjct: 241 PAVLGIMNLMWFGKIIKGLKKTLTKRQ 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490528|gb|AFK33330.1| unknown [Medicago truncatula]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 222/267 (83%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M+ KSYQ+QA   +KEY+LADPL+PYTSI+G IFACKMVYDL QL S +HFKSYSS + I
Sbjct: 8   MKFKSYQNQANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTIHFKSYSSLTRI 67

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NRA+ST+H+IFIT MSLY VF S+L+ D++ A L+T RS+  STF LGVSVGYF
Sbjct: 68  QRIEWNNRAMSTIHSIFITTMSLYLVFCSNLYSDSESAELLTERSSALSTFALGVSVGYF 127

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +ADLGMI WF+PALGG EYVIHHL S+ A A +ML+ E Q YTYMVLISETTTPGINLRW
Sbjct: 128 MADLGMIFWFFPALGGYEYVIHHLFSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRW 187

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMK S+AY ING+++F+AWLV RIL F+Y+FYH YLH DQV+Q     QILV  V
Sbjct: 188 YLDVAGMKGSKAYPINGVVIFIAWLVARILLFVYMFYHAYLHFDQVQQMHPFGQILVVVV 247

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           PVVL +MN +WFSKI+KGL+KTLAK+Q
Sbjct: 248 PVVLSVMNLIWFSKIIKGLMKTLAKRQ 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526956|ref|XP_003532081.1| PREDICTED: transmembrane protein 56-B-like [Glycine max]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/264 (67%), Positives = 218/264 (82%)

Query: 4   KSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRV 63
           KSYQ++A   +KEY+LAD L+PYTS++  + ACKMVY+L Q I + +FK YS+FS IQR+
Sbjct: 11  KSYQNRANLFVKEYLLADSLIPYTSVISGMLACKMVYELTQHIGSNYFKIYSNFSKIQRI 70

Query: 64  EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLAD 123
           EW+NRAIST+HAIFIT+MSLY VF S+LF D Q   LIT RS+  STF LGVSVGYF+AD
Sbjct: 71  EWNNRAISTIHAIFITSMSLYMVFCSNLFSDYQSTELITERSSSLSTFALGVSVGYFIAD 130

Query: 124 LGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLD 183
           LG I+WF+PALGG EYVIHHL S+ A A AMLT E Q YT+MVLISETTTPGINLRWYLD
Sbjct: 131 LGTILWFFPALGGYEYVIHHLFSLVAVAYAMLTGEGQLYTFMVLISETTTPGINLRWYLD 190

Query: 184 KAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVV 243
            AGMK+S+AYLING+++F++WLV RIL F+Y+FYH+YLH D+V+Q  T  QILV  VP+V
Sbjct: 191 VAGMKKSKAYLINGVVIFISWLVARILLFIYMFYHVYLHFDEVEQMHTFGQILVIVVPLV 250

Query: 244 LFIMNAVWFSKIVKGLVKTLAKQQ 267
           L +MN VWF+KI+KGL KTLAK+Q
Sbjct: 251 LSVMNLVWFAKIIKGLRKTLAKRQ 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558686|ref|XP_002520367.1| conserved hypothetical protein [Ricinus communis] gi|223540414|gb|EEF41983.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 214/267 (80%), Gaps = 1/267 (0%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M  +SYQ+ AE LLKEY+L D  +PYTSI+  IFACK VYDL  L SAV+FK Y   +N+
Sbjct: 1   MGTRSYQNHAELLLKEYLLDDSFIPYTSIIAGIFACKTVYDLTDLFSAVYFKCYPKLANV 60

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NRAIST HAIFIT +SLY VF SDL+ D+  A +ITFRS+  S F LGVSVGYF
Sbjct: 61  QRIEWNNRAISTFHAIFITVISLYLVFGSDLYSDHS-ADVITFRSSSLSVFALGVSVGYF 119

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +AD+GMIIWFYP+LGGMEYVIHHLLS+ A A AMLT E Q YT++VLISETTTPGINLRW
Sbjct: 120 IADIGMIIWFYPSLGGMEYVIHHLLSMVAVAYAMLTSEGQLYTFIVLISETTTPGINLRW 179

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMKRSRAYLING+++FLAWLV RIL F+Y+F HIYLH DQVKQ      +LV  V
Sbjct: 180 YLDTAGMKRSRAYLINGVVIFLAWLVARILLFIYLFCHIYLHYDQVKQLHEFGILLVLIV 239

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           P +L IMN +WF KI+KGL KTLAK+Q
Sbjct: 240 PAMLSIMNLMWFWKIIKGLKKTLAKRQ 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085397|ref|XP_002307565.1| predicted protein [Populus trichocarpa] gi|222857014|gb|EEE94561.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/267 (68%), Positives = 217/267 (81%)

Query: 1   MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
           M +KSYQ  AE LLKEY+LA PL+PYTSI G IFACKMVYDL  L SAV+FKSYS+ +N+
Sbjct: 1   MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNL 60

Query: 61  QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYF 120
           QR+EW+NRAIST HA+FIT MSLYFVF SDLF D   A L+TFRS+  STF LGVS GYF
Sbjct: 61  QRIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGLVTFRSSALSTFALGVSAGYF 120

Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
           +ADLGMIIWFYP+LGGMEYVIHH LS+ A A +MLT E Q YTYMVLISETTTPGINLRW
Sbjct: 121 IADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTTPGINLRW 180

Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSV 240
           YLD AGMK+S+AYL+NG+++F AW V RIL F+Y+FYH++LH  QVKQ  +  ++L   V
Sbjct: 181 YLDTAGMKKSKAYLLNGVVIFFAWFVARILLFIYLFYHVFLHQYQVKQMHSFGRLLALVV 240

Query: 241 PVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
           PVVL +MN +WF KI KG+ KTLAK+ 
Sbjct: 241 PVVLSVMNLMWFWKIFKGMKKTLAKRH 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	1.0	0.996	0.615	2.8e-89
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.988	0.949	0.606	1.4e-87
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.932	0.936	0.449	5.7e-59
MGI|MGI:1923195	276	Tmem56 "transmembrane protein	0.767	0.742	0.274	5.5e-22
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.805	0.823	0.273	1.1e-21
RGD|1563041	263	Tmem56 "transmembrane protein	0.764	0.775	0.263	1.3e-20
UNIPROTKB|Q96MV1	263	TMEM56 "Transmembrane protein	0.876	0.889	0.271	1.7e-20
UNIPROTKB|E2RSK2	263	TMEM56 "Uncharacterized protei	0.865	0.878	0.262	3.5e-20
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.895	0.865	0.262	1.5e-19
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.887	0.901	0.256	4e-19

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 165/268 (61%), Positives = 209/268 (77%)

Query:     1 MEVKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI 60
             ME+KSYQ+QAE  ++ Y+LADP +PYTS++  I  CK+VYDL +L S++H KSYS+ + I
Sbjct:     1 MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query:    61 QRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQ-LASLITFRSAFPSTFTLGVSVGY 119
             +R+EW+NR ISTVHAIFI+ M+LYF F+SDLF D + L +L  FR++  STF LGVSVGY
Sbjct:    61 KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGY 120

Query:   120 FLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLR 179
             FLADLGMI W YP+LGG EY++HH LS  A A ++ + EAQ YTYMVLISE TTP INLR
Sbjct:   121 FLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLR 180

Query:   180 WYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFS 239
             WYLD AG+KRS+AYL+NG+ +F AWL  RIL F+Y+FYH+Y H DQV +  T   +LVF 
Sbjct:   181 WYLDIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYLLVFV 240

Query:   240 VPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
             VP+ L +MN +WF KIVKGL KTL K+Q
Sbjct:   241 VPISLSVMNLIWFGKIVKGLKKTLEKRQ 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 160/264 (60%), Positives = 201/264 (76%)

Query:     3 VKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQR 62
             +KSY  QA+ L+K Y+LADP +PYTS++  IF CK+VYDL   IS  H K+Y   + IQR
Sbjct:    12 IKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQR 71

Query:    63 VEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLA 122
             +EW+NR ISTVHAIFI+AMSLYFVFWSDLF D     L+ FRS+  S+  LG+S+GYFLA
Sbjct:    72 IEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLA 131

Query:   123 DLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYL 182
             DLGMI W YP+LGG+EY++HH LS  A A ++ + E Q YTYMVLISE TTP INLRWYL
Sbjct:   132 DLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPEINLRWYL 191

Query:   183 DKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPV 242
             D AGMK+S AY++NG+ +FLAWLV RIL F+Y+FYH+YLH +QV +      +LVF VP 
Sbjct:   192 DTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYVLVFGVPA 251

Query:   243 VLFIMNAVWFSKIVKGLVKTLAKQ 266
              L +MN +WF KIV+G+ KTLAK+
Sbjct:   252 ALGVMNLIWFGKIVRGVKKTLAKR 275

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 112/249 (44%), Positives = 160/249 (64%)

Query:    17 YILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAI 76
             ++ +  L+   SI      CK+VYDL + IS + F  Y    +  R+EW+NR  ST HA+
Sbjct:     9 FVSSRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAV 68

Query:    77 FITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGG 136
             F +  S+YF+  SD F +N     +   +   S   +G+S+GYFLADL MI W++P LGG
Sbjct:    69 FTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGG 128

Query:   137 MEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLIN 196
             +EYV HH LS+ A   ++ + ++QFY ++VL+SE TTP +NLRWYLD +G K S+AY +N
Sbjct:   129 IEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLN 188

Query:   197 GILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIV 256
             GI +FL WLV R+L F++ F H+YLH  QVKQ        + ++P  L +MN +WF KI 
Sbjct:   189 GIALFLGWLVARVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKIT 248

Query:   257 KGLVKTLAK 265
             KGL+KTL+K
Sbjct:   249 KGLIKTLSK 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1923195 Tmem56 "transmembrane protein 56" [Mus musculus (taxid:10090)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/215 (27%), Positives = 113/215 (52%)

Query:    54 YSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTL 113
             Y+S S  +++EW++R +ST H++ +    LY  F+ +  + + L    T+ +       +
Sbjct:    51 YNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPLWGDPTYVN-----INI 105

Query:   114 GVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTT 173
               + GY ++DL +I++ +  +G   ++IHH   + A    + T    +     L++E ++
Sbjct:   106 ATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELSS 165

Query:   174 PGINLRWYLDKAGM-KRSRAYLINGILMFLAWLVVRILFF--MYIF-YHIYLHVDQVKQC 229
             P +N RW+ +     K S+A +INGILM + + +VRI+    MY F Y +Y   +   + 
Sbjct:   166 PFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVY-GTEPYIRF 224

Query:   230 RTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264
                +Q +     V+L +MN +W  KI KG +K ++
Sbjct:   225 GFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVIS 259

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 62/227 (27%), Positives = 114/227 (50%)

Query:    42 LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
             L+  +S      +S+ S  +++EW++R +ST HA+ +    LY + + +    + L    
Sbjct:    25 LSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYDEAVNADHLWG-- 82

Query:   102 TFRSAFPSTFTLGVSV--GYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREA 159
                   PS   L +++  GY ++DL +II ++ A+G   +VIHHL ++ A    +     
Sbjct:    83 -----DPSIVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHHLAALYAYYFVLSKGLL 137

Query:   160 QFYTYMVLISETTTPGINLRWYLDKAGM-KRSRAYLINGILMFLAWLVVRILFFMYIFYH 218
              ++    L++E +TP +N RW+ +  G  K S+A +ING+LM + + VVRI      +  
Sbjct:   138 AYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFFVVRIAVMPMYYSR 197

Query:   219 IY--LHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL 263
             ++     +  ++     Q       +VL +MN +W  KI KG  K +
Sbjct:   198 VFSSFGTEGFQRLGFAAQSAWIISSIVLDVMNLMWMVKITKGCYKVI 244

GO:0016021 "integral to membrane" evidence=IEA

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 57/216 (26%), Positives = 111/216 (51%)

Query:    54 YSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTL 113
             Y+S S  +++EW++R +ST H++ +    LY  F+ +  + + L          PS   +
Sbjct:    38 YNSLSTEKKIEWNSRVVSTCHSMLVGIFGLYLFFFDEATIADPLWG-------DPSLVKI 90

Query:   114 GVSV--GYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISET 171
              +S   GY ++DL +I++ +  +G   ++IHH   + A    +      +     L++E 
Sbjct:    91 NISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIAYYFVLKIGVLAYIANFRLLAEL 150

Query:   172 TTPGINLRWYLDKAGM-KRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCR 230
             ++P +N RW+ +     K S+  +INGILM + + +VRI+    +++++Y         R
Sbjct:   151 SSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAIPPMYFYVYSVYGTEPYIR 210

Query:   231 --TCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264
               + V  +  S  +VL +MN +W  KI KG +K ++
Sbjct:   211 LGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVIS 246

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96MV1 TMEM56 "Transmembrane protein 56" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 67/247 (27%), Positives = 127/247 (51%)

Query:    23 LVPYTSIVGSIFACKMV-YDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAM 81
             L+  T I  S F  +++ Y ++   SA     ++S S  +++EW++R +ST H++ +   
Sbjct:     8 LISVTCI--SFFTFQLLFYFVSYWFSAKVSPGFNSLSFKKKIEWNSRVVSTCHSLVVGIF 65

Query:    82 SLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVI 141
              LY +F   LF +   A  +    +  +   + ++ GY ++DL +II ++  +G   +++
Sbjct:    66 GLY-IF---LFDEATKADPLWGGPSLANV-NIAIASGYLISDLSIIILYWKVIGDKFFIM 120

Query:   142 HHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGM-KRSRAYLINGILM 200
             HH  S+ A    +      +     L++E ++P +N RW+ +     K S+A +INGILM
Sbjct:   121 HHCASLYAYYLVLKNGVLAYIGNFRLLAELSSPFVNQRWFFEALKYPKFSKAIVINGILM 180

Query:   201 FLAWLVVRILFFM--YIF-YHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVK 257
              + + +VRI   +  Y F Y +Y   +   +    +Q+      VVL +MN +W  KI K
Sbjct:   181 TVVFFIVRIASMLPHYGFMYSVY-GTEPYIRLGVLIQLSWVISCVVLDVMNVMWMIKISK 239

Query:   258 GLVKTLA 264
             G +K ++
Sbjct:   240 GCIKVIS 246

GO:0016021 "integral to membrane" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RSK2 TMEM56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 64/244 (26%), Positives = 124/244 (50%)

Query:    27 TSIVGSIFACKMV-YDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYF 85
             +++  S F  +++ Y ++   SA     + S S  +++EW++R +ST H++ +    LY 
Sbjct:    10 STVFTSFFTFQLLFYFISFWFSAKVSPGFVSLSFEKKIEWNSRVVSTCHSLVVGLFGLYL 69

Query:    86 VFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLL 145
              F+ +  + + L       S+      + ++ GY ++DL ++I ++  +G   ++IHH  
Sbjct:    70 FFFDEATMADPLWG----DSSLVKV-NISIATGYLISDLLILILYWKVIGDKYFIIHHCA 124

Query:   146 SIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGM-KRSRAYLINGILMFLAW 204
             ++ A    +            L++E ++P +N RW+ +     K S+A +INGILM + +
Sbjct:   125 ALYAYYYVLRYGVLASIGNFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVF 184

Query:   205 LVVRIL----FFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLV 260
              +VRI     F+ Y+ Y + L  +   +    +Q    S  VVL IMN +W  KI KG +
Sbjct:   185 FIVRIAPIPPFYSYM-YSV-LGTEAYIRLGFLIQCSWISTCVVLDIMNVMWMIKITKGCI 242

Query:   261 KTLA 264
             K ++
Sbjct:   243 KVIS 246

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 67/255 (26%), Positives = 123/255 (48%)

Query:    18 ILADP---LVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVH 74
             +  DP   L+   S+V   F   + + ++   S+     +   ++ Q++EW++R +ST+H
Sbjct:    12 VAMDPFSQLILLISVVSFFFFQWLFHSVSPWASSRISPGFLKLTHKQKIEWNSRTVSTLH 71

Query:    75 AIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFL-ADLGMIIWFYPA 133
             A+ +    LY +F+ +    + +    T          + ++ GY + ADL +I +++ A
Sbjct:    72 ALLVGLFCLYILFFDEAVNQDPVWGDPTLVK-----INVSITTGYLISADLLLIFYYWRA 126

Query:   134 LGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGM-KRSRA 192
             +G   +VIHHL ++ A    +      ++    L++E +TP +N RW+ +  G  K SR 
Sbjct:   127 IGDKFFVIHHLAALYAYYYVLGQGMLPYFANFRLLAEFSTPCVNQRWFFEVLGYPKSSRP 186

Query:   193 YLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQC-RTCV---QILVFSVPVVLFIMN 248
              + NG+LM   + +VRI   M ++Y     V   +   R         +FS  + L IMN
Sbjct:   187 NMANGVLMAAVFFLVRIAV-MPVYYSRMCSVYGTEAFYRVSFGGRSAWIFS-SICLDIMN 244

Query:   249 AVWFSKIVKGLVKTL 263
              +W  KI +G  K L
Sbjct:   245 VMWMHKIFRGCYKVL 259

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 64/250 (25%), Positives = 115/250 (46%)

Query:    21 DPLVPYTSIV--GSIFACKMVYDLAQLISAVHF-KSYSSFSNIQRVEWSNRAISTVHAIF 77
             +PL P   +V  GS  + + ++         H    +   S  Q+ EW++RA+STVHA+ 
Sbjct:     2 EPLSPQVLVVVAGSFLSFQWLFHRVSPWVFQHLCGGFLRLSPTQKTEWNSRAVSTVHALV 61

Query:    78 ITAMSLY-FVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGG 136
             +    LY ++F      D  +     +  A      + V+ GY ++DL ++   + ++G 
Sbjct:    62 VGLFCLYIYIF------DESIQKDPVWGDATLVKLNVAVTSGYLMSDLLLMFTSWESIGE 115

Query:   137 MEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGM-KRSRAYLI 195
               +VIHH  ++ A    +      ++    L+SE +TP +N RW+    G  K S+  L+
Sbjct:   116 KYFVIHHFAALYAYYYVLSQGILPYFANFRLLSEFSTPFVNQRWFFHMLGYHKLSKPSLL 175

Query:   196 NGILMFLAWLVVRILFFMYIFYHIY--LHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFS 253
             NG+ M   + +VRI      + H+Y     D   +     +       V L +MN +W  
Sbjct:   176 NGVAMAFTFFLVRIAVIPGYYSHMYSVFGTDDFYRLPIGARCAWVISSVSLDVMNIMWMR 235

Query:   254 KIVKGLVKTL 263
             +I++G +K L
Sbjct:   236 RIIRGCLKVL 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018853001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (267 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	6e-26
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	9e-24

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score =  100 bits (252), Expect = 6e-26
 Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 8/206 (3%)

Query: 62  RVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFL 121
             E SNR +S +H++     +LY   W            ++  + F   F    S+GYF+
Sbjct: 3   FNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLF----SLGYFI 58

Query: 122 ADLGMIIWFYPALGGM--EYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLR 179
            DL  ++ F         E ++HH+ ++   + + +    +    ++L+ E + P ++LR
Sbjct: 59  HDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLR 118

Query: 180 WYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCV--QILV 237
             L+ AG K+S  Y +N +L  + + V R++ F ++   + +H  Q +         +L 
Sbjct: 119 KLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLFPPLLYLLF 178

Query: 238 FSVPVVLFIMNAVWFSKIVKGLVKTL 263
             + + L ++N  WF  I++   K L
Sbjct: 179 LLLLLCLQLLNIYWFFLILRMARKLL 204

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 94.6 bits (236), Expect = 9e-24
 Identities = 38/201 (18%), Positives = 91/201 (45%), Gaps = 10/201 (4%)

Query: 64  EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPST-----FTLGVSVG 118
           +++ R +S VH +    + LY +     F +               T     F   + +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 119 YFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINL 178
           YFL DL +++++       E ++HH++++   + +      +    ++L+ E + P ++L
Sbjct: 61  YFLHDLLVLLFYEKRRKW-EMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 179 RWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTC--VQIL 236
           R +L+  G K+S   L   +L  +++ +VR++   ++     L   ++        +  +
Sbjct: 120 RKFLNYLGKKKSCDVLF--VLFLVSFFLVRLVLGPFLILLSILDEARLDIPGGPFNLYYI 177

Query: 237 VFSVPVVLFIMNAVWFSKIVK 257
             ++ +VL ++N  WF  I++
Sbjct: 178 FLALLLVLQLLNIYWFYLIIR 198

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG4561	281	consensus Uncharacterized conserved protein, conta	100.0
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	100.0
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	100.0
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.95
KOG1607	318	consensus Protein transporter of the TRAM (translo	99.48
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	99.33
PF14018	75	DUF4234: Domain of unknown function (DUF4234)	81.97

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.5e-47  Score=328.22  Aligned_cols=258  Identities=33%  Similarity=0.587  Sum_probs=221.3

Q ss_pred             hhhHHHHHHHHhhhhccCCCCccHHHHHHHHHHHHHHHHHH---HHhHhhhhccccCCCccccccee-ehhhHHHHHHHH
Q 024448            3 VKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLA---QLISAVHFKSYSSFSNIQRVEWS-NRAISTVHAIFI   78 (267)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ls---~~ls~~~~k~y~~l~~~~~~~w~-~r~vS~vHa~v~   78 (267)
                      .+++..+.+.++.....+.+.++.+....++++|+.+|+++   +..|+...++|.++++++|++|| +|++|++|++++
T Consensus         6 ~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~   85 (281)
T KOG4561|consen    6 LPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVS   85 (281)
T ss_pred             CCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhh
Confidence            45666778889999999999999999999999999999999   88888888999999999999999 999999999998


Q ss_pred             HHHHHHHHhhccccc-ccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhhccc
Q 024448           79 TAMSLYFVFWSDLFL-DNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTR  157 (267)
Q Consensus        79 ~~~a~~~l~~~~l~~-~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~~~~l~HH~~~l~~~~~~~~~~  157 (267)
                      +  ++|+++.++.|. |++..+...++.+......    .|||++|+..+.++++..+|.+|++||+++++........|
T Consensus        86 ~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~  159 (281)
T KOG4561|consen   86 S--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRG  159 (281)
T ss_pred             c--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecC
Confidence            7  889888776665 5554443323333222222    55999999877777888999999999999844444445678


Q ss_pred             chhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccchhHH
Q 024448          158 EAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYL--HVDQVKQCRTCVQI  235 (267)
Q Consensus       158 ~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~~~~~--~~~~~~~~~~~~~~  235 (267)
                      .+++++..++++|+||||+|+||+++++|+|+|++|.+||++++++|+++||+..|++.++.+.  +..+.++.++..+.
T Consensus       160 ~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (281)
T KOG4561|consen  160 VGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPL  239 (281)
T ss_pred             ccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhH
Confidence            8999999999999999999999999999999999999999999999999999988999988873  33556778888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024448          236 LVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQ  266 (267)
Q Consensus       236 ~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k~  266 (267)
                      .+++++++++++|+|||.||+|+++|.++|+
T Consensus       240 ~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~  270 (281)
T KOG4561|consen  240 FLLGLNALLLVLNLYWFSKMVRGALKVLKKA  270 (281)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999775

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=100.00  E-value=2.8e-35  Score=249.87  Aligned_cols=200  Identities=24%  Similarity=0.366  Sum_probs=170.3

Q ss_pred             ccccceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccC--Cc
Q 024448           60 IQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALG--GM  137 (267)
Q Consensus        60 ~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~--~~  137 (267)
                      +|+.||++|++|.+||++++..+++....   ++|+..++|. .+.++..+...++++|||++|++++..+++..+  ++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~   76 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK   76 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            47899999999999999999888776542   1222223554 678899999999999999999999986554433  79


Q ss_pred             hHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448          138 EYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFY  217 (267)
Q Consensus       138 ~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~  217 (267)
                      +|++||+++++++..+...+..+.+...++++|+||||+|+||++++.|.++++.+..|+.+++++|+++|++.+|+..+
T Consensus        77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~  156 (205)
T smart00724       77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL  156 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024448          218 HIYLHVDQVK--QCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL  263 (267)
Q Consensus       218 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l  263 (267)
                      ..+.+.++..  ..++.....+.+++.++++||++||++|+|+++|.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~  204 (205)
T smart00724      157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL  204 (205)
T ss_pred             HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8876654322  134556677778889999999999999999999976

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=100.00  E-value=8.9e-35  Score=244.36  Aligned_cols=193  Identities=30%  Similarity=0.566  Sum_probs=159.8

Q ss_pred             ceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccCC-chHHHH
Q 024448           64 EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGG-MEYVIH  142 (267)
Q Consensus        64 ~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~-~~~l~H  142 (267)
                      ||++|++|++|+++++.+|++++..++.+.++.++++. .++++..+...++++|||++|++++....+..+| .+|++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            79999999999999999999999876311122222322 3445677779999999999999999976654444 899999


Q ss_pred             HHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHc-CC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024448          143 HLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKA-GM-KRSRAYLINGILMFLAWLVVRILFFMYIFYHIY  220 (267)
Q Consensus       143 H~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~-g~-~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~~~~  220 (267)
                      |++++.++..++..+.+++++..++++|+||||+|+||++++. |. ++++.+.+|+++++++|+++|++..|+..++.+
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~  159 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY  159 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888899999999999999999999999999999 77 688999999999999999999999999888776


Q ss_pred             hhhhc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448          221 LHVDQ--VKQCRTCVQILVFSVPVVLFIMNAVWFSKIVK  257 (267)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k  257 (267)
                      .+..+  .++.++.......++..++++||++||+||+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r  198 (198)
T PF03798_consen  160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR  198 (198)
T ss_pred             HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            65432  12223455667778888899999999999987

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=3.1e-28  Score=206.99  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=164.6

Q ss_pred             CCCcccccceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccC
Q 024448           56 SFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALG  135 (267)
Q Consensus        56 ~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~  135 (267)
                      .+++.+|.+|.|+.||++||++++.++.+++..+   + +.-.||+ ...++.+..+.++|+|||++|+++|..+.....
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~---~-~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD---P-EMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC---c-ccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            5677779999999999999999999999988754   2 3334555 345778889999999999999999997544445


Q ss_pred             CchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Q 024448          136 GMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRS-RAYLINGILMFLAWLVVRILFFMY  214 (267)
Q Consensus       136 ~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s-~~y~~n~~~~~~~Ff~~Ri~~~~~  214 (267)
                      .+|+++||++++.++..+++++.+..++.+.+++|+||||+|+|.+++.+|.+++ +.++++..++..+|+.+|++...|
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~  191 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY  191 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence            6899999999999999999999888899999999999999999999999998764 469999999999999999999888


Q ss_pred             HHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448          215 IFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLV  260 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~  260 (267)
                      +.+....+.   +..+.....+..++...+.+.|.+.+.++++.-.
T Consensus       192 l~~~~i~~~---~~~~~~~~~~~~gg~~~l~~~n~~l~~rll~sdg  234 (253)
T KOG4474|consen  192 LTYFLIANA---PFLHWYLKLFALGGLLCLAVINTVLTLRLLASDG  234 (253)
T ss_pred             EEEEEeeeC---CCcceehhHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence            777655543   3333444455667888999999999999998763

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=3.2e-12  Score=113.31  Aligned_cols=209  Identities=10%  Similarity=0.146  Sum_probs=145.7

Q ss_pred             ccCCCcccccceeehhhHHHHHHHHHHHHHHHHhhcccccccc---cccccccCCCchhhhHHHHHHHHHHHHHHHHHHh
Q 024448           54 YSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQ---LASLITFRSAFPSTFTLGVSVGYFLADLGMIIWF  130 (267)
Q Consensus        54 y~~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~---~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~  130 (267)
                      ++.-+++.+.+.....=..+-=.++.+.|+|++..++-|.|.-   .+-|. ....+.-.....+-+||...-+..+...
T Consensus        78 ~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~~d  156 (318)
T KOG1607|consen   78 LNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALFLD  156 (318)
T ss_pred             cCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            3433444444455544455555566777888776532222111   11111 2234445566778889988888888765


Q ss_pred             ccccCCchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Q 024448          131 YPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRIL  210 (267)
Q Consensus       131 ~~~~~~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~  210 (267)
                      ..+.+-.+|++||++++..+..+...+....+.....+++.|.+++.+.++++..+.+  .+-...-++++..|+..|+.
T Consensus       157 ~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL~  234 (318)
T KOG1607|consen  157 EKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRLI  234 (318)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence            5544457999999999998888877777777788888999999999999998776655  56667788899999999988


Q ss_pred             HHHHHHHHHhh--hhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024448          211 FFMYIFYHIYL--HVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAK  265 (267)
Q Consensus       211 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k  265 (267)
                      ..|....+.-.  +..+-...++..+++.+++...+++||+||++.|+|.+.|.+++
T Consensus       235 ~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~  291 (318)
T KOG1607|consen  235 YYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKR  291 (318)
T ss_pred             HHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87766543322  22221212345677788888999999999999999999999983

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=99.33  E-value=1.4e-11  Score=108.07  Aligned_cols=204  Identities=13%  Similarity=0.146  Sum_probs=139.3

Q ss_pred             CcccccceeehhhHHHHHHHHHHHHHHHHhhccccc---cccccc-ccccCCCchhhhHHHHHHHHHHHHHHHHH--Hhc
Q 024448           58 SNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFL---DNQLAS-LITFRSAFPSTFTLGVSVGYFLADLGMII--WFY  131 (267)
Q Consensus        58 ~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~---~~~~~d-~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~--~~~  131 (267)
                      ++++..++....-+..--.+.++.|+|++..++++.   ++..++ |+ +++++.-.....+-.||-+.......  ...
T Consensus       150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk  228 (395)
T COG5058         150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK  228 (395)
T ss_pred             CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence            444447788888888888888999999988776543   111122 33 55667777777888999988844433  345


Q ss_pred             cccCCchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 024448          132 PALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILF  211 (267)
Q Consensus       132 ~~~~~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~  211 (267)
                      |+.+-.+|+.||+++++.+..+...++..-.......+++|+|||.+.+.++..|-   .+......+|+..|+-.|-..
T Consensus       229 prkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~iF~iFv~~wIysRHyl  305 (395)
T COG5058         229 PRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATFIFGIFVFIWIYSRHYL  305 (395)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHHH
Confidence            65556899999999998877666555555455566799999999999999888755   555556677888999999544


Q ss_pred             HHHHHHHHhhhh---hc----cc--ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024448          212 FMYIFYHIYLHV---DQ----VK--QCR-TCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAK  265 (267)
Q Consensus       212 ~~~~~~~~~~~~---~~----~~--~~~-~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k  265 (267)
                      ..-..+..+...   +.    ++  +.. .....+..++...++.+|+||+..|+|.+.|.+..
T Consensus       306 n~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~  369 (395)
T COG5058         306 NLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE  369 (395)
T ss_pred             HHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            432222222211   11    11  111 12233455667789999999999999999998854

>PF14018 DUF4234: Domain of unknown function (DUF4234)

Probab=81.97  E-value=15  Score=25.59  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhhhhhccc-----c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024448          211 FFMYIFYHIYLHVDQVK-----Q-CRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA  264 (267)
Q Consensus       211 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~  264 (267)
                      .+.|..++++...++++     . .++......+...+...+.+++|++|+-+.+-+.+.
T Consensus        14 ~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~~   73 (75)
T PF14018_consen   14 CGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEAR   73 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666665543221     1 122233334444566789999999999998877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00